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{{f5samples
{{f5samples
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000465,UBERON:0000479,UBERON:0001062,UBERON:0002384
|DRA_sample_Accession=CAGE@SAMD00005494
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000037,CL:0000048,CL:0000051,CL:0000063,CL:0000084,CL:0000134,CL:0000144,CL:0000219,CL:0000255,CL:0000542,CL:0000548,CL:0000566,CL:0000624,CL:0000723,CL:0000738,CL:0000789,CL:0000790,CL:0000791,CL:0000827,CL:0000837,CL:0000838,CL:0000988,CL:0002031,CL:0002032,CL:0002087,CL:0002320,CL:0002371,CL:0002419,CL:0002420
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005494
|accession_numbers=CAGE;DRX008176;DRR009048;DRZ000473;DRZ001858;DRZ011823;DRZ013208
|accession_numbers_RNASeq=sRNA-Seq;DRX037129;DRR041495;DRZ007137
|ancestors_in_anatomy_facet=
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000542,CL:0000219,CL:0000738,CL:0002087,CL:0002242,CL:0000255,CL:0000791,CL:0000084,CL:0000789,CL:0002419,CL:0000624
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000031
|comment=
|comment=
|created_by=
|created_by=
|creation_date=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr5:133451294..133451310,+!p2@TCF7!2.19!152.25!TCF7;;chr3:63953435..63953499,+!p1@ATXN7!2.10!124.91!ATXN7;;chr5:133450365..133450444,+!p1@TCF7!1.96!392.63!TCF7;;chr1:25256756..25256774,-!p1@RUNX3!1.93!154.22!RUNX3;;chr4:109087445..109087463,-!p1@LEF1!1.93!83.80!LEF1;;chr2:192015701..192015743,-!p1@STAT4!1.92!110.75!STAT4;;chr7:50343634..50343717,+!p2@IKZF1!1.92!82.22!IKZF1;;chr3:71542615..71542644,-!p12@FOXP1!1.89!77.11!FOXP1;;chr10:8096772..8096787,+!p2@GATA3!1.88!87.93!GATA3;;chr2:157189180..157189290,-!p1@NR4A2!1.86!356.24!NR4A2;;chr19:54058073..54058088,+!p1@ZNF331!1.83!67.27!ZNF331;;chr19:45971246..45971265,+!p1@FOSB!1.80!1075.41!FOSB;;chr10:8096631..8096660,+!p1@GATA3!1.78!70.42!GATA3;;chr6:91006518..91006570,-!p1@BACH2!1.72!114.49!BACH2;;chr15:60884706..60884743,-!p1@RORA!1.69!237.63!RORA;;chr20:50159198..50159299,-!p1@NFATC2!1.69!69.64!NFATC2;;chr5:133451347..133451358,+!p3@TCF7!1.68!47.41!TCF7;;chr2:231090433..231090469,+!p1@SP140!1.68!47.01!SP140;;chr9:3525727..3525828,-!p2@RFX3!1.67!112.52!RFX3;;chr19:54041669..54041697,+!p2@ZNF331!1.67!45.24!ZNF331;;chrY:21906594..21906622,-!p1@KDM5D!1.65!44.06!KDM5D;;chr3:18486354..18486377,-!p2@SATB1!1.62!50.16!SATB1;;chr3:71542684..71542720,-!p18@FOXP1!1.62!40.92!FOXP1;;chr4:109090075..109090095,-!p2@LEF1!1.62!40.52!LEF1;;chrX:106960285..106960299,-!p1@TSC22D3!1.61!1013.45!TSC22D3;;chr14:75745523..75745537,+!p1@FOS!1.60!4410.82!FOS;;chr2:192015750..192015793,-!p2@STAT4!1.59!49.96!STAT4;;chr6:106546808..106546833,+!p3@PRDM1!1.57!45.64!PRDM1;;chr3:39195075..39195088,-!p1@CSRNP1!1.55!205.76!CSRNP1;;chr3:71355163..71355209,-!p5@FOXP1!1.54!45.83!FOXP1;;chr6:12009042..12009092,+!p6@HIVEP1!1.51!40.92!HIVEP1;;chr19:16435625..16435682,+!p1@KLF2!1.49!912.73!KLF2;;chr9:117150254..117150271,-!p1@AKNA!1.49!80.06!AKNA;;chr9:102584262..102584276,+!p1@NR4A3!1.49!65.90!NR4A3;;chr7:50343895..50343936,+!p5@IKZF1!1.49!30.10!IKZF1;;chr3:71542651..71542683,-!p22@FOXP1!1.49!29.90!FOXP1;;chr17:38020392..38020477,-!p1@IKZF3!1.48!29.51!IKZF3;;chr2:157189617..157189667,-!p4@NR4A2!1.47!28.52!NR4A2;;chr1:59249688..59249703,-!p3@JUN!1.46!161.30!JUN;;chr19:19729477..19729542,-!p1@PBX4!1.46!58.82!PBX4;;chr10:35484053..35484076,+!p1@CREM!1.45!66.09!CREM;;chr20:51588873..51588953,+!p1@TSHZ2!1.45!35.60!TSHZ2;;chr19:12902289..12902307,+!p1@JUNB!1.43!5631.41!JUNB;;chr1:25291475..25291511,-!p2@RUNX3!1.43!26.16!RUNX3;;chr6:106546834..106546850,+!p4@PRDM1!1.42!25.57!PRDM1;;chr6:391743..391759,+!p1@IRF4!1.42!25.57!IRF4;;chr7:50344251..50344288,+!p3@IKZF1!1.42!25.57!IKZF1;;chr1:59249707..59249727,-!p1@JUN!1.38!932.60!JUN;;chr11:67007548..67007610,+!p3@KDM2A!1.37!160.91!KDM2A;;chr8:123793988..123794016,+!p1@ZHX2!1.37!38.95!ZHX2;;chr6:91006575..91006602,-!p2@BACH2!1.37!33.24!BACH2;;chr5:131826457..131826514,-!p1@IRF1!1.36!822.25!IRF1;;chr21:36421535..36421610,-!p2@RUNX1!1.35!73.96!RUNX1;;chr2:231090471..231090504,+!p2@SP140!1.35!21.44!SP140;;chr13:74707894..74707947,-!p6@KLF12!1.34!23.21!KLF12;;chr3:18487057..18487105,-!p4@SATB1!1.34!20.65!SATB1;;chr4:103422499..103422632,+!p1@NFKB1!1.33!415.25!NFKB1;;chr9:102584241..102584261,+!p4@NR4A3!1.33!31.08!NR4A3;;chr14:99738138..99738163,-!p1@BCL11B!1.33!20.46!BCL11B;;chrX:106960221..106960236,-!p3@TSC22D3!1.32!54.10!TSC22D3;;chr7:104654690..104654704,+!p2@MLL5!1.32!38.95!MLL5;;chr20:51589835..51589848,+!p5@TSHZ2!1.32!20.06!TSHZ2;;chr12:72056800..72056834,+!p1@THAP2!1.31!25.77!THAP2;;chr17:37934365..37934387,-!p2@IKZF3!1.31!19.47!IKZF3;;chrX:106960180..106960197,-!p2@TSC22D3!1.30!70.82!TSC22D3;;chr10:3824332..3824425,-!p4@KLF6!1.28!28.92!KLF6;;chr8:81397820..81397836,+!p2@ZBTB10!1.27!22.03!ZBTB10;;chr19:16435423..16435484,+!p5@KLF2!1.27!17.70!KLF2;;chr7:104654718..104654741,+!p3@MLL5!1.26!24.98!MLL5;;chr8:81397846..81397860,+!p3@ZBTB10!1.26!21.64!ZBTB10;;chr2:43453734..43453751,-!p1@ZFP36L2!1.25!1729.47!ZFP36L2;;chr10:3827389..3827408,-!p1@KLF6!1.25!1260.52!KLF6;;chr11:128392273..128392308,-!p2@ETS1!1.25!70.62!ETS1;;chr19:12721790..12721810,+!p2@ZNF791!1.25!45.83!ZNF791;;chr14:64971288..64971316,-!p2@ZBTB25!1.24!50.36!ZBTB25;;chr3:23986824..23986848,+!p2@NR1D2!1.23!88.72!NR1D2;;chr14:64970670..64970712,-!p3@ZBTB25!1.21!32.85!ZBTB25;;chr4:38665769..38665801,+!p2@KLF3!1.20!133.17!KLF3;;chr10:35416142..35416169,+!p3@CREM!1.20!39.34!CREM;;chr10:35484090..35484104,+!p6@CREM!1.20!14.75!CREM;;chr19:54041645..54041661,+!p5@ZNF331!1.20!14.75!ZNF331;;chr13:41593425..41593480,-!p1@ELF1!1.19!90.09!ELF1;;chr4:109089573..109089585,-!p8@LEF1!1.19!14.36!LEF1;;chr14:99737850..99737852,-!p3@BCL11B!1.19!14.36!BCL11B;;chr7:50344289..50344323,+!p1@IKZF1!1.18!14.16!IKZF1;;chrX:49121165..49121179,-!p1@FOXP3!1.18!13.97!FOXP3;;chr3:71179699..71179744,-!p2@FOXP1!1.17!102.09!FOXP1;;chr14:65569101..65569119,-!p3@MAX!1.17!43.67!MAX;;chr4:87927888..87927912,+!p18@AFF1!1.17!13.77!AFF1;;chr15:60884747..60884774,-!p3@RORA!1.16!33.24!RORA;;chr5:142782823..142782854,-!p3@NR3C1!1.16!19.08!NR3C1;;chr18:46475696..46475713,-!p1@SMAD7!1.16!14.95!SMAD7;;chr14:35873947..3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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000084;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000542;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000624;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000789;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988
|ffid_belonging_in_development=CL:0000134,CL:0000051,CL:0000790
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 34: Line 44:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252b%2520T%2520Cells%252c%2520donor1.CNhs10853.11225-116C1.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252b%2520T%2520Cells%252c%2520donor1.CNhs10853.11225-116C1.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252b%2520T%2520Cells%252c%2520donor1.CNhs10853.11225-116C1.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD4%252b%2520T%2520Cells%252c%2520donor1.CNhs10853.11225-116C1.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD4%252b%2520T%2520Cells%252c%2520donor1.CNhs10853.11225-116C1.hg38.nobarcode.ctss.bed.gz
|id=FF:11225-116C1
|id=FF:11225-116C1
|is_a=EFO:0002091;;FF:0000002;;FF:0000031;;FF:0000210
|is_a=EFO:0002091;;FF:0000031;;FF:0000210
|is_obsolete=
|library_id=CNhs10853
|library_id_phase_based=2:CNhs10853
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11225
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10009.TTAGGC.11225
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11225
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10009.TTAGGC.11225
|name=CD4+ T Cells, donor1
|name=CD4+ T Cells, donor1
|namespace=FANTOM5
|namespace=FANTOM5
Line 41: Line 65:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs10853,LSID702,release008,COMPLETED
|profile_hcage=CNhs10853,LSID702,release008,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=SRhi10009,,,
|profile_srnaseq=SRhi10009,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|rna_box=116
|rna_box=116
|rna_catalog_number=3H100-23-10
|rna_catalog_number=3H100-23-10
Line 55: Line 82:
|rna_tube_id=116C1
|rna_tube_id=116C1
|rna_weight_ug=10
|rna_weight_ug=10
|rnaseq_library_id=SRhi10009.TTAGGC
|sample_age=53
|sample_age=53
|sample_category=primary cells
|sample_cell_catalog=N/A
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_line=
Line 68: Line 97:
|sample_ethnicity=C
|sample_ethnicity=C
|sample_experimental_condition=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;3.67830775436497e-234!GO:0043227;membrane-bound organelle;5.09328005709523e-204!GO:0043231;intracellular membrane-bound organelle;1.27731901046886e-203!GO:0043226;organelle;4.00781816345737e-195!GO:0043229;intracellular organelle;2.46126425004667e-194!GO:0005634;nucleus;6.45605171018702e-131!GO:0005737;cytoplasm;5.22657268350088e-120!GO:0043170;macromolecule metabolic process;8.75262203360311e-113!GO:0044422;organelle part;3.21620255651963e-109!GO:0044446;intracellular organelle part;1.50882168203723e-107!GO:0044237;cellular metabolic process;5.01605681765697e-105!GO:0044238;primary metabolic process;1.55974368333456e-102!GO:0043283;biopolymer metabolic process;1.41395234801858e-89!GO:0044428;nuclear part;4.86056534034216e-87!GO:0003723;RNA binding;9.40804860109554e-86!GO:0032991;macromolecular complex;1.05484117392753e-84!GO:0010467;gene expression;1.78829049087298e-76!GO:0030529;ribonucleoprotein complex;3.16321454525919e-76!GO:0044444;cytoplasmic part;8.41528825618312e-71!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.75828678776383e-70!GO:0043233;organelle lumen;3.83843209994817e-67!GO:0031974;membrane-enclosed lumen;3.83843209994817e-67!GO:0005515;protein binding;1.38067678126121e-61!GO:0003676;nucleic acid binding;1.12153382494647e-58!GO:0031981;nuclear lumen;1.69738438713332e-56!GO:0006396;RNA processing;3.26196000887381e-55!GO:0019538;protein metabolic process;8.66708011644941e-49!GO:0033036;macromolecule localization;2.25314156688117e-48!GO:0016070;RNA metabolic process;4.98866391998405e-48!GO:0016071;mRNA metabolic process;7.19969461150341e-48!GO:0044267;cellular protein metabolic process;1.89539004850588e-47!GO:0044260;cellular macromolecule metabolic process;1.61013633123805e-46!GO:0006412;translation;2.38897876656618e-46!GO:0015031;protein transport;9.71457037708077e-46!GO:0045184;establishment of protein localization;1.39627181629864e-43!GO:0008104;protein localization;1.45347112377142e-43!GO:0043234;protein complex;1.99623787756121e-41!GO:0008380;RNA splicing;4.91183192885101e-41!GO:0006397;mRNA processing;4.74715575289606e-40!GO:0005840;ribosome;2.20856332496756e-38!GO:0005739;mitochondrion;2.5349295036251e-36!GO:0005654;nucleoplasm;7.28926187442885e-36!GO:0006259;DNA metabolic process;2.16240875008728e-35!GO:0016043;cellular component organization and biogenesis;7.31469202014905e-34!GO:0046907;intracellular transport;8.94224916788347e-34!GO:0009059;macromolecule biosynthetic process;9.45908239341695e-34!GO:0003735;structural constituent of ribosome;3.73958449253914e-33!GO:0006886;intracellular protein transport;6.36869971215138e-32!GO:0000166;nucleotide binding;1.91605663007306e-31!GO:0031090;organelle membrane;2.19721956953234e-31!GO:0033279;ribosomal subunit;1.00914467198752e-30!GO:0005681;spliceosome;1.05270012151418e-30!GO:0006512;ubiquitin cycle;1.06689380504384e-29!GO:0031967;organelle envelope;1.61998369712296e-29!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.62558511975823e-29!GO:0065003;macromolecular complex assembly;2.69166094756072e-29!GO:0031975;envelope;3.21148224698459e-29!GO:0005829;cytosol;3.27175369402543e-29!GO:0044451;nucleoplasm part;4.55829087126381e-29!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.82063518767275e-28!GO:0006996;organelle organization and biogenesis;3.73053711740068e-27!GO:0022607;cellular component assembly;1.33429904336952e-26!GO:0044429;mitochondrial part;2.83562832265316e-26!GO:0043412;biopolymer modification;4.94537017941023e-25!GO:0044445;cytosolic part;2.57497728634595e-24!GO:0051641;cellular localization;5.71660294366515e-24!GO:0051649;establishment of cellular localization;1.30797667367666e-23!GO:0044249;cellular biosynthetic process;6.32923122210305e-23!GO:0050794;regulation of cellular process;6.59743057528658e-23!GO:0009058;biosynthetic process;1.09189743584991e-22!GO:0032553;ribonucleotide binding;3.36687911036353e-22!GO:0032555;purine ribonucleotide binding;3.36687911036353e-22!GO:0006464;protein modification process;5.45218056867346e-22!GO:0017111;nucleoside-triphosphatase activity;1.0702644825692e-21!GO:0016462;pyrophosphatase activity;1.66186302417315e-21!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.66686384006639e-21!GO:0043687;post-translational protein modification;1.90723930920268e-21!GO:0016817;hydrolase activity, acting on acid anhydrides;2.10952593801138e-21!GO:0005730;nucleolus;2.38078645824561e-21!GO:0051603;proteolysis involved in cellular protein catabolic process;2.72264892351773e-21!GO:0019941;modification-dependent protein catabolic process;2.72264892351773e-21!GO:0043632;modification-dependent macromolecule catabolic process;2.72264892351773e-21!GO:0008134;transcription factor binding;3.58347246349894e-21!GO:0006511;ubiquitin-dependent protein catabolic process;3.58347246349894e-21!GO:0017076;purine nucleotide binding;4.92399855623525e-21!GO:0016874;ligase activity;7.0156280562002e-21!GO:0019222;regulation of metabolic process;9.12001635114154e-21!GO:0044257;cellular protein catabolic process;9.15711822272879e-21!GO:0043228;non-membrane-bound organelle;1.63401094529854e-20!GO:0043232;intracellular non-membrane-bound organelle;1.63401094529854e-20!GO:0044265;cellular macromolecule catabolic process;2.92153775649755e-20!GO:0016604;nuclear body;4.40067732055227e-20!GO:0012501;programmed cell death;4.59738233041018e-20!GO:0006915;apoptosis;6.20775351632606e-20!GO:0051276;chromosome organization and biogenesis;1.15954676342857e-19!GO:0006325;establishment and/or maintenance of chromatin architecture;1.22897194475163e-19!GO:0008219;cell death;2.90576207303206e-19!GO:0016265;death;2.90576207303206e-19!GO:0022618;protein-RNA complex assembly;3.45745187018634e-19!GO:0006605;protein targeting;4.50040008597933e-19!GO:0005524;ATP binding;5.70252561896816e-19!GO:0006323;DNA packaging;8.10937749234713e-19!GO:0006913;nucleocytoplasmic transport;9.58058808569986e-19!GO:0051169;nuclear transport;1.92290807989378e-18!GO:0007049;cell cycle;2.41109846994778e-18!GO:0032559;adenyl ribonucleotide binding;2.44983332863458e-18!GO:0031323;regulation of cellular metabolic process;3.00868387418636e-18!GO:0043285;biopolymer catabolic process;5.20313547361927e-18!GO:0006350;transcription;9.22406765037236e-18!GO:0006974;response to DNA damage stimulus;1.18019688600705e-17!GO:0016607;nuclear speck;3.63001685039741e-17!GO:0008135;translation factor activity, nucleic acid binding;4.06938412493932e-17!GO:0030554;adenyl nucleotide binding;5.29807573009147e-17!GO:0005740;mitochondrial envelope;7.37848517001564e-17!GO:0031966;mitochondrial membrane;1.82921838312465e-16!GO:0050789;regulation of biological process;1.92640777795769e-16!GO:0010468;regulation of gene expression;2.57696913434377e-16!GO:0015935;small ribosomal subunit;4.27526336092505e-16!GO:0015934;large ribosomal subunit;1.29404229049635e-15!GO:0004386;helicase activity;1.47863317940093e-15!GO:0019866;organelle inner membrane;2.26365225785031e-15!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.10981043081534e-15!GO:0016568;chromatin modification;4.26434994909503e-15!GO:0006281;DNA repair;5.21930124013458e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);8.16193164908235e-15!GO:0009057;macromolecule catabolic process;9.92211103234989e-15!GO:0016887;ATPase activity;1.0393730600316e-14!GO:0032774;RNA biosynthetic process;1.5045591024259e-14!GO:0006351;transcription, DNA-dependent;1.74753770897939e-14!GO:0006119;oxidative phosphorylation;1.77120514384392e-14!GO:0042623;ATPase activity, coupled;1.9216217532343e-14!GO:0030163;protein catabolic process;2.57472898008813e-14!GO:0000398;nuclear mRNA splicing, via spliceosome;2.69580911277409e-14!GO:0000375;RNA splicing, via transesterification reactions;2.69580911277409e-14!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.69580911277409e-14!GO:0008270;zinc ion binding;3.69728047961099e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.86928066163169e-14!GO:0005635;nuclear envelope;7.18049143975186e-14!GO:0042981;regulation of apoptosis;9.45617123256085e-14!GO:0045449;regulation of transcription;1.29068727978996e-13!GO:0031965;nuclear membrane;1.48063612635442e-13!GO:0043067;regulation of programmed cell death;1.52379335207177e-13!GO:0008026;ATP-dependent helicase activity;2.70611778535812e-13!GO:0005743;mitochondrial inner membrane;2.71114641656292e-13!GO:0012505;endomembrane system;2.75401565417774e-13!GO:0044453;nuclear membrane part;4.66956023965824e-13!GO:0022402;cell cycle process;6.39318815860631e-13!GO:0003712;transcription cofactor activity;7.03402878792185e-13!GO:0017038;protein import;7.03402878792185e-13!GO:0005694;chromosome;9.03128409543383e-13!GO:0050657;nucleic acid transport;1.27290241608723e-12!GO:0051236;establishment of RNA localization;1.27290241608723e-12!GO:0050658;RNA transport;1.27290241608723e-12!GO:0006403;RNA localization;1.54442206734684e-12!GO:0006457;protein folding;1.59843122263882e-12!GO:0006413;translational initiation;2.2546075519636e-12!GO:0003743;translation initiation factor activity;2.31315079208892e-12!GO:0006366;transcription from RNA polymerase II promoter;2.79353015817583e-12!GO:0008639;small protein conjugating enzyme activity;2.79564944470231e-12!GO:0004842;ubiquitin-protein ligase activity;3.16645367632677e-12!GO:0006355;regulation of transcription, DNA-dependent;3.75996848790493e-12!GO:0051726;regulation of cell cycle;7.16237766637663e-12!GO:0005643;nuclear pore;8.50569965490866e-12!GO:0044455;mitochondrial membrane part;8.9961977946857e-12!GO:0065004;protein-DNA complex assembly;9.40271032374522e-12!GO:0000502;proteasome complex (sensu Eukaryota);1.07522829110019e-11!GO:0031980;mitochondrial lumen;1.22313346345458e-11!GO:0005759;mitochondrial matrix;1.22313346345458e-11!GO:0000074;regulation of progression through cell cycle;1.24427620066145e-11!GO:0019787;small conjugating protein ligase activity;1.54003595332311e-11!GO:0044248;cellular catabolic process;1.87396545667273e-11!GO:0006333;chromatin assembly or disassembly;2.08371540671245e-11!GO:0006446;regulation of translational initiation;2.71549719198983e-11!GO:0042254;ribosome biogenesis and assembly;3.37794402219643e-11!GO:0065007;biological regulation;7.8662978457508e-11!GO:0006793;phosphorus metabolic process;7.87811160099906e-11!GO:0006796;phosphate metabolic process;7.87811160099906e-11!GO:0009719;response to endogenous stimulus;9.19834094317759e-11!GO:0003677;DNA binding;1.17611338434762e-10!GO:0051028;mRNA transport;1.23408602646452e-10!GO:0044427;chromosomal part;1.40222795095747e-10!GO:0051170;nuclear import;2.62074096011114e-10!GO:0006606;protein import into nucleus;3.31063164219274e-10!GO:0048523;negative regulation of cellular process;5.02935232639198e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;6.42604905696974e-10!GO:0005746;mitochondrial respiratory chain;7.70552828311541e-10!GO:0048193;Golgi vesicle transport;9.30575825700895e-10!GO:0051082;unfolded protein binding;1.03407749124961e-09!GO:0016310;phosphorylation;1.57522039688635e-09!GO:0046914;transition metal ion binding;1.68661461676416e-09!GO:0043566;structure-specific DNA binding;1.68661461676416e-09!GO:0046930;pore complex;1.74353248356496e-09!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.93962457240856e-09!GO:0007243;protein kinase cascade;2.17812935891642e-09!GO:0016881;acid-amino acid ligase activity;2.47988326764338e-09!GO:0005794;Golgi apparatus;2.7673605323248e-09!GO:0003713;transcription coactivator activity;3.10339393378406e-09!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;3.15511375717297e-09!GO:0048770;pigment granule;4.56978557773825e-09!GO:0042470;melanosome;4.56978557773825e-09!GO:0050136;NADH dehydrogenase (quinone) activity;5.30040380259379e-09!GO:0003954;NADH dehydrogenase activity;5.30040380259379e-09!GO:0008137;NADH dehydrogenase (ubiquinone) activity;5.30040380259379e-09!GO:0016563;transcription activator activity;8.42790210171432e-09!GO:0000785;chromatin;9.08904432611474e-09!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.31146143683628e-08!GO:0003697;single-stranded DNA binding;1.49025682863555e-08!GO:0048519;negative regulation of biological process;1.57992656147129e-08!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.79807736393964e-08!GO:0065002;intracellular protein transport across a membrane;1.9649520636089e-08!GO:0045786;negative regulation of progression through cell cycle;2.07746834975511e-08!GO:0031324;negative regulation of cellular metabolic process;2.07975348202051e-08!GO:0016072;rRNA metabolic process;3.09034953538204e-08!GO:0032446;protein modification by small protein conjugation;3.51185295389421e-08!GO:0042775;organelle ATP synthesis coupled electron transport;3.62471012618023e-08!GO:0042773;ATP synthesis coupled electron transport;3.62471012618023e-08!GO:0016192;vesicle-mediated transport;3.77713337446696e-08!GO:0005768;endosome;3.98708340620588e-08!GO:0006364;rRNA processing;4.01071258010947e-08!GO:0016564;transcription repressor activity;5.93023353215647e-08!GO:0065009;regulation of a molecular function;6.02921707985973e-08!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;6.11613608716907e-08!GO:0016772;transferase activity, transferring phosphorus-containing groups;6.94116149252713e-08!GO:0016567;protein ubiquitination;9.71882845553726e-08!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.05538021930563e-07!GO:0051246;regulation of protein metabolic process;1.05538021930563e-07!GO:0008565;protein transporter activity;1.16081336838551e-07!GO:0000151;ubiquitin ligase complex;1.26330489554431e-07!GO:0030964;NADH dehydrogenase complex (quinone);1.26718581678416e-07!GO:0045271;respiratory chain complex I;1.26718581678416e-07!GO:0005747;mitochondrial respiratory chain complex I;1.26718581678416e-07!GO:0019829;cation-transporting ATPase activity;1.37546374547917e-07!GO:0006399;tRNA metabolic process;1.48496467911404e-07!GO:0051168;nuclear export;1.75385196209559e-07!GO:0016740;transferase activity;1.90840392953692e-07!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.08664469902247e-07!GO:0004674;protein serine/threonine kinase activity;2.23047158058672e-07!GO:0019899;enzyme binding;2.43934992930601e-07!GO:0009892;negative regulation of metabolic process;2.47433417741074e-07!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.96169484313772e-07!GO:0016481;negative regulation of transcription;2.97621548049117e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;3.23335394197984e-07!GO:0006260;DNA replication;3.29155374928494e-07!GO:0003724;RNA helicase activity;4.36556096126098e-07!GO:0016787;hydrolase activity;4.90377222080074e-07!GO:0007242;intracellular signaling cascade;5.08385530968098e-07!GO:0006916;anti-apoptosis;6.76872153591802e-07!GO:0031497;chromatin assembly;7.16170654494686e-07!GO:0043069;negative regulation of programmed cell death;7.42054455395069e-07!GO:0030532;small nuclear ribonucleoprotein complex;8.22410259269095e-07!GO:0006334;nucleosome assembly;8.99692840445259e-07!GO:0005761;mitochondrial ribosome;9.84322846470149e-07!GO:0000313;organellar ribosome;9.84322846470149e-07!GO:0043066;negative regulation of apoptosis;1.08335689948756e-06!GO:0000278;mitotic cell cycle;1.20029041869443e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.26981055545181e-06!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.27430889576567e-06!GO:0051186;cofactor metabolic process;1.86489091833904e-06!GO:0009259;ribonucleotide metabolic process;2.05835255057956e-06!GO:0006917;induction of apoptosis;2.25412806785038e-06!GO:0009260;ribonucleotide biosynthetic process;2.84684851807856e-06!GO:0043065;positive regulation of apoptosis;2.89290266497395e-06!GO:0006888;ER to Golgi vesicle-mediated transport;2.92063160810667e-06!GO:0000245;spliceosome assembly;3.01987551086739e-06!GO:0016363;nuclear matrix;3.47487605445539e-06!GO:0012502;induction of programmed cell death;3.55016432583859e-06!GO:0006401;RNA catabolic process;4.27776713558119e-06!GO:0043068;positive regulation of programmed cell death;4.43315900229704e-06!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;4.98631558629026e-06!GO:0006402;mRNA catabolic process;5.65834186195137e-06!GO:0006164;purine nucleotide biosynthetic process;5.85990933704649e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;5.89549979703295e-06!GO:0004812;aminoacyl-tRNA ligase activity;5.89549979703295e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;5.89549979703295e-06!GO:0009060;aerobic respiration;6.30570430202006e-06!GO:0015986;ATP synthesis coupled proton transport;6.45655479088543e-06!GO:0015985;energy coupled proton transport, down electrochemical gradient;6.45655479088543e-06!GO:0009152;purine ribonucleotide biosynthetic process;6.58395838660279e-06!GO:0003924;GTPase activity;7.02354191044224e-06!GO:0006357;regulation of transcription from RNA polymerase II promoter;7.22587319003612e-06!GO:0016779;nucleotidyltransferase activity;7.23909812611704e-06!GO:0044432;endoplasmic reticulum part;9.25127060304706e-06!GO:0006163;purine nucleotide metabolic process;1.09873126826753e-05!GO:0005525;GTP binding;1.11938288464577e-05!GO:0043038;amino acid activation;1.33058987114129e-05!GO:0006418;tRNA aminoacylation for protein translation;1.33058987114129e-05!GO:0043039;tRNA aminoacylation;1.33058987114129e-05!GO:0009150;purine ribonucleotide metabolic process;1.34921441455616e-05!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.43466414890869e-05!GO:0008186;RNA-dependent ATPase activity;1.62169409709738e-05!GO:0006461;protein complex assembly;1.63989564746045e-05!GO:0015078;hydrogen ion transmembrane transporter activity;1.65257802384803e-05!GO:0005813;centrosome;1.66161376928157e-05!GO:0006417;regulation of translation;1.69951583078348e-05!GO:0005839;proteasome core complex (sensu Eukaryota);1.74164681988423e-05!GO:0006352;transcription initiation;2.16031469171074e-05!GO:0005789;endoplasmic reticulum membrane;2.46517095081451e-05!GO:0009056;catabolic process;2.62703421335774e-05!GO:0008234;cysteine-type peptidase activity;2.71657587301013e-05!GO:0006732;coenzyme metabolic process;2.86339256021985e-05!GO:0045259;proton-transporting ATP synthase complex;3.60817826767577e-05!GO:0006754;ATP biosynthetic process;3.89068537814247e-05!GO:0006753;nucleoside phosphate metabolic process;3.89068537814247e-05!GO:0019783;small conjugating protein-specific protease activity;3.92176880553456e-05!GO:0003690;double-stranded DNA binding;4.02187384591202e-05!GO:0004298;threonine endopeptidase activity;4.32517975940089e-05!GO:0048475;coated membrane;4.79335253614258e-05!GO:0030117;membrane coat;4.79335253614258e-05!GO:0004004;ATP-dependent RNA helicase activity;5.13240398606985e-05!GO:0060090;molecular adaptor activity;5.14416830696795e-05!GO:0045333;cellular respiration;5.20919689242218e-05!GO:0006613;cotranslational protein targeting to membrane;5.20919689242218e-05!GO:0031326;regulation of cellular biosynthetic process;5.69334907571819e-05!GO:0003729;mRNA binding;5.9258335436308e-05!GO:0005783;endoplasmic reticulum;6.18353656191301e-05!GO:0016469;proton-transporting two-sector ATPase complex;6.3211278857073e-05!GO:0004843;ubiquitin-specific protease activity;6.3893422007837e-05!GO:0005815;microtubule organizing center;6.73682846894097e-05!GO:0006310;DNA recombination;6.92886556104619e-05!GO:0016251;general RNA polymerase II transcription factor activity;7.28807673341974e-05!GO:0005793;ER-Golgi intermediate compartment;7.92928250500187e-05!GO:0009142;nucleoside triphosphate biosynthetic process;7.98920751148574e-05!GO:0009201;ribonucleoside triphosphate biosynthetic process;7.98920751148574e-05!GO:0046034;ATP metabolic process;8.20761639022357e-05!GO:0048522;positive regulation of cellular process;8.31140475847902e-05!GO:0030120;vesicle coat;8.33224818987023e-05!GO:0030662;coated vesicle membrane;8.33224818987023e-05!GO:0007264;small GTPase mediated signal transduction;8.76139144362783e-05!GO:0051427;hormone receptor binding;9.78161913705919e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;9.82128929129904e-05!GO:0015399;primary active transmembrane transporter activity;9.82128929129904e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;9.86705522945993e-05!GO:0009199;ribonucleoside triphosphate metabolic process;0.000110243945062022!GO:0009615;response to virus;0.000113816964656768!GO:0044440;endosomal part;0.000114595963706633!GO:0010008;endosome membrane;0.000114595963706633!GO:0022403;cell cycle phase;0.000114962425171141!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;0.000127696094269132!GO:0009145;purine nucleoside triphosphate biosynthetic process;0.000127696094269132!GO:0045892;negative regulation of transcription, DNA-dependent;0.000130505399106175!GO:0004221;ubiquitin thiolesterase activity;0.000141902119903864!GO:0030695;GTPase regulator activity;0.00014420257014549!GO:0007005;mitochondrion organization and biogenesis;0.000146033254675897!GO:0032561;guanyl ribonucleotide binding;0.000147618378928026!GO:0019001;guanyl nucleotide binding;0.000147618378928026!GO:0007265;Ras protein signal transduction;0.000153040099016795!GO:0015630;microtubule cytoskeleton;0.000154396538104805!GO:0050790;regulation of catalytic activity;0.000155199615239289!GO:0043623;cellular protein complex assembly;0.000157244214718981!GO:0051188;cofactor biosynthetic process;0.000160394945003537!GO:0005769;early endosome;0.000161759024526376!GO:0003714;transcription corepressor activity;0.000166639961004141!GO:0044431;Golgi apparatus part;0.000167322363105599!GO:0009205;purine ribonucleoside triphosphate metabolic process;0.000170951580853833!GO:0009144;purine nucleoside triphosphate metabolic process;0.000170951580853833!GO:0035257;nuclear hormone receptor binding;0.000172237672314239!GO:0009141;nucleoside triphosphate metabolic process;0.000183795202400141!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000192182426364968!GO:0005667;transcription factor complex;0.000202082106200367!GO:0006607;NLS-bearing substrate import into nucleus;0.000204513032397894!GO:0006261;DNA-dependent DNA replication;0.000243671162473413!GO:0005083;small GTPase regulator activity;0.000304548812763225!GO:0015631;tubulin binding;0.000317409440513201!GO:0006612;protein targeting to membrane;0.000347176483471188!GO:0006099;tricarboxylic acid cycle;0.0003549105460355!GO:0046356;acetyl-CoA catabolic process;0.0003549105460355!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000371988649372293!GO:0005770;late endosome;0.000375770662516821!GO:0006338;chromatin remodeling;0.000499484627209393!GO:0009889;regulation of biosynthetic process;0.000509126254332592!GO:0006611;protein export from nucleus;0.000532387783729664!GO:0009108;coenzyme biosynthetic process;0.000542260780644924!GO:0003725;double-stranded RNA binding;0.00054586437741947!GO:0043492;ATPase activity, coupled to movement of substances;0.000571223587042193!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000577578197918484!GO:0042110;T cell activation;0.000602406168947999!GO:0008017;microtubule binding;0.000602406168947999!GO:0008654;phospholipid biosynthetic process;0.000604504593456379!GO:0006084;acetyl-CoA metabolic process;0.000614744985425141!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000627346537003014!GO:0006405;RNA export from nucleus;0.000652293620273578!GO:0030384;phosphoinositide metabolic process;0.000682234040944537!GO:0031072;heat shock protein binding;0.000684320970004698!GO:0000087;M phase of mitotic cell cycle;0.000684462829319738!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000702842611052228!GO:0051301;cell division;0.000722829619514218!GO:0048471;perinuclear region of cytoplasm;0.000761293111164951!GO:0009966;regulation of signal transduction;0.000766563134724861!GO:0016301;kinase activity;0.000771176761835677!GO:0006891;intra-Golgi vesicle-mediated transport;0.00078060603140682!GO:0007050;cell cycle arrest;0.000784180734264486!GO:0005773;vacuole;0.000802782586836252!GO:0003682;chromatin binding;0.000855588849829595!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.00085854665295305!GO:0009967;positive regulation of signal transduction;0.000913730052611309!GO:0008047;enzyme activator activity;0.000928281822956402!GO:0046966;thyroid hormone receptor binding;0.000966006934939139!GO:0008632;apoptotic program;0.000974793625081649!GO:0016197;endosome transport;0.00101003591917447!GO:0008022;protein C-terminus binding;0.00101263786037845!GO:0007067;mitosis;0.00104286727526087!GO:0044452;nucleolar part;0.00108545322463631!GO:0003746;translation elongation factor activity;0.00111464973465037!GO:0031625;ubiquitin protein ligase binding;0.00121193864859205!GO:0006752;group transfer coenzyme metabolic process;0.00123435280497467!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.00131184921786324!GO:0005885;Arp2/3 protein complex;0.00132062475647201!GO:0051090;regulation of transcription factor activity;0.00134431185383305!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00134872170705601!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00137313764726809!GO:0008168;methyltransferase activity;0.0014441907688736!GO:0043021;ribonucleoprotein binding;0.00144610618673335!GO:0016741;transferase activity, transferring one-carbon groups;0.00148987213654574!GO:0048518;positive regulation of biological process;0.00153252948566296!GO:0009055;electron carrier activity;0.00155811759600434!GO:0006414;translational elongation;0.0016022082593616!GO:0009109;coenzyme catabolic process;0.00162428459918197!GO:0016790;thiolester hydrolase activity;0.00163309938292994!GO:0051252;regulation of RNA metabolic process;0.0016551745903301!GO:0003899;DNA-directed RNA polymerase activity;0.00176497519465144!GO:0006383;transcription from RNA polymerase III promoter;0.00179068081018006!GO:0045941;positive regulation of transcription;0.00190228620749098!GO:0000139;Golgi membrane;0.00190345269990314!GO:0051251;positive regulation of lymphocyte activation;0.00196566009227193!GO:0005669;transcription factor TFIID complex;0.00198515357261212!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00206059394545796!GO:0046822;regulation of nucleocytoplasmic transport;0.00207737376203663!GO:0003678;DNA helicase activity;0.00207906376135116!GO:0004527;exonuclease activity;0.00215102749517553!GO:0006650;glycerophospholipid metabolic process;0.0021933596085735!GO:0005070;SH3/SH2 adaptor activity;0.00222196269265817!GO:0030518;steroid hormone receptor signaling pathway;0.00245157082016676!GO:0019843;rRNA binding;0.00249995124748987!GO:0016584;nucleosome positioning;0.00254132984211732!GO:0003684;damaged DNA binding;0.00258695876973906!GO:0000323;lytic vacuole;0.00262856643620448!GO:0005764;lysosome;0.00262856643620448!GO:0051223;regulation of protein transport;0.00263338582036146!GO:0006302;double-strand break repair;0.00266336238447486!GO:0022415;viral reproductive process;0.00266668318380997!GO:0045893;positive regulation of transcription, DNA-dependent;0.00272909045926483!GO:0006367;transcription initiation from RNA polymerase II promoter;0.00284333220762764!GO:0046489;phosphoinositide biosynthetic process;0.0033187071820282!GO:0005637;nuclear inner membrane;0.00332232249042395!GO:0042802;identical protein binding;0.00335442097087987!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00336908224975475!GO:0051187;cofactor catabolic process;0.00342006857251889!GO:0042101;T cell receptor complex;0.00363150015477611!GO:0016585;chromatin remodeling complex;0.00370590037885121!GO:0032259;methylation;0.00370590037885121!GO:0000279;M phase;0.00372655978361523!GO:0051789;response to protein stimulus;0.00372655978361523!GO:0006986;response to unfolded protein;0.00372655978361523!GO:0008276;protein methyltransferase activity;0.00378682328431626!GO:0019867;outer membrane;0.00380075020941962!GO:0003711;transcription elongation regulator activity;0.00395325364286932!GO:0030258;lipid modification;0.00400403258851881!GO:0043414;biopolymer methylation;0.0040453333923383!GO:0005741;mitochondrial outer membrane;0.00404695554080937!GO:0005684;U2-dependent spliceosome;0.00407436395894373!GO:0008139;nuclear localization sequence binding;0.00410007566140134!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00416308914998525!GO:0005048;signal sequence binding;0.00433235000588533!GO:0032200;telomere organization and biogenesis;0.00438307048882225!GO:0000723;telomere maintenance;0.00438307048882225!GO:0043488;regulation of mRNA stability;0.0046184098836968!GO:0043487;regulation of RNA stability;0.0046184098836968!GO:0031968;organelle outer membrane;0.00465235630423624!GO:0005798;Golgi-associated vesicle;0.00484344763885366!GO:0006468;protein amino acid phosphorylation;0.00490320499292524!GO:0040029;regulation of gene expression, epigenetic;0.00500482283078914!GO:0019901;protein kinase binding;0.00500482283078914!GO:0030521;androgen receptor signaling pathway;0.00502339199644329!GO:0043087;regulation of GTPase activity;0.00509268828259078!GO:0031252;leading edge;0.00525899520232495!GO:0005096;GTPase activator activity;0.00528673371312715!GO:0051059;NF-kappaB binding;0.00531745556802488!GO:0004518;nuclease activity;0.00534611217777765!GO:0005774;vacuolar membrane;0.00536771582777735!GO:0008033;tRNA processing;0.00554465675533911!GO:0048500;signal recognition particle;0.00558036147740193!GO:0005819;spindle;0.00610583090319621!GO:0046649;lymphocyte activation;0.00613463443717465!GO:0051336;regulation of hydrolase activity;0.00628048806968333!GO:0051539;4 iron, 4 sulfur cluster binding;0.00635691490503856!GO:0003702;RNA polymerase II transcription factor activity;0.00646483380050134!GO:0000786;nucleosome;0.00649333064572491!GO:0051329;interphase of mitotic cell cycle;0.00649333064572491!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.00671577256168732!GO:0006818;hydrogen transport;0.0068379702451199!GO:0048468;cell development;0.0069835899923044!GO:0017091;AU-rich element binding;0.0069835899923044!GO:0050779;RNA destabilization;0.0069835899923044!GO:0000289;poly(A) tail shortening;0.0069835899923044!GO:0051052;regulation of DNA metabolic process;0.00704796677954559!GO:0046474;glycerophospholipid biosynthetic process;0.00722112984402133!GO:0030658;transport vesicle membrane;0.00760478531024569!GO:0005657;replication fork;0.00774952947966317!GO:0030522;intracellular receptor-mediated signaling pathway;0.00775775260233215!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.00775775260233215!GO:0015992;proton transport;0.00779684080861656!GO:0019904;protein domain specific binding;0.00784517460672026!GO:0007004;telomere maintenance via telomerase;0.00785127797649044!GO:0000049;tRNA binding;0.00815232571824015!GO:0045603;positive regulation of endothelial cell differentiation;0.00815232571824015!GO:0006376;mRNA splice site selection;0.00815232571824015!GO:0000389;nuclear mRNA 3'-splice site recognition;0.00815232571824015!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00820632404622007!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00820632404622007!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00820632404622007!GO:0000209;protein polyubiquitination;0.00837529523526602!GO:0051092;activation of NF-kappaB transcription factor;0.00875853682518531!GO:0004722;protein serine/threonine phosphatase activity;0.00889052686529822!GO:0005765;lysosomal membrane;0.00905303667349507!GO:0008287;protein serine/threonine phosphatase complex;0.00907454739959426!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.00921954956711326!GO:0043621;protein self-association;0.00922064151113612!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00969852232589846!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.00971754696443783!GO:0016279;protein-lysine N-methyltransferase activity;0.00996108484489493!GO:0018024;histone-lysine N-methyltransferase activity;0.00996108484489493!GO:0016278;lysine N-methyltransferase activity;0.00996108484489493!GO:0019900;kinase binding;0.010356724103491!GO:0050852;T cell receptor signaling pathway;0.0107081233455186!GO:0051098;regulation of binding;0.0108418601422254!GO:0000119;mediator complex;0.0111903600036896!GO:0050870;positive regulation of T cell activation;0.0112198772243954!GO:0006289;nucleotide-excision repair;0.0112964531318367!GO:0051325;interphase;0.0113695384480514!GO:0019210;kinase inhibitor activity;0.0115132073798652!GO:0044437;vacuolar part;0.0116951141013071!GO:0046854;phosphoinositide phosphorylation;0.0117642062375721!GO:0043681;protein import into mitochondrion;0.0119591286024857!GO:0030118;clathrin coat;0.0120140064398081!GO:0016311;dephosphorylation;0.0122058443683481!GO:0008312;7S RNA binding;0.0122163186280105!GO:0048487;beta-tubulin binding;0.0122442106572696!GO:0032508;DNA duplex unwinding;0.0122601598878378!GO:0032392;DNA geometric change;0.0122601598878378!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0122601598878378!GO:0045047;protein targeting to ER;0.0122601598878378!GO:0000781;chromosome, telomeric region;0.0124118615502812!GO:0022406;membrane docking;0.012630127139377!GO:0048278;vesicle docking;0.012630127139377!GO:0016569;covalent chromatin modification;0.0128153788441704!GO:0051235;maintenance of localization;0.0129731622258906!GO:0005762;mitochondrial large ribosomal subunit;0.0129833520737888!GO:0000315;organellar large ribosomal subunit;0.0129833520737888!GO:0000314;organellar small ribosomal subunit;0.0134918176162076!GO:0005763;mitochondrial small ribosomal subunit;0.0134918176162076!GO:0009893;positive regulation of metabolic process;0.0137407293707886!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0141858302307918!GO:0000059;protein import into nucleus, docking;0.0141913446641955!GO:0047485;protein N-terminus binding;0.0143586696231268!GO:0006904;vesicle docking during exocytosis;0.0145653754617892!GO:0004402;histone acetyltransferase activity;0.0145822276845986!GO:0004468;lysine N-acetyltransferase activity;0.0145822276845986!GO:0033673;negative regulation of kinase activity;0.0145822276845986!GO:0006469;negative regulation of protein kinase activity;0.0145822276845986!GO:0015923;mannosidase activity;0.0146190777063935!GO:0031461;cullin-RING ubiquitin ligase complex;0.0146500973607502!GO:0031902;late endosome membrane;0.0148127222411724!GO:0043549;regulation of kinase activity;0.0148134565742139!GO:0004860;protein kinase inhibitor activity;0.0149995423204674!GO:0051338;regulation of transferase activity;0.015095593935978!GO:0008624;induction of apoptosis by extracellular signals;0.0152347958673838!GO:0030880;RNA polymerase complex;0.0153577433887445!GO:0008097;5S rRNA binding;0.015657799312146!GO:0051087;chaperone binding;0.0156675537019643!GO:0000287;magnesium ion binding;0.015756173752505!GO:0016788;hydrolase activity, acting on ester bonds;0.015756173752505!GO:0046834;lipid phosphorylation;0.0162914939453769!GO:0050811;GABA receptor binding;0.0166490127067236!GO:0030660;Golgi-associated vesicle membrane;0.0169694456698116!GO:0000118;histone deacetylase complex;0.0171030714777493!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0171141870988965!GO:0006406;mRNA export from nucleus;0.0176646988329096!GO:0030127;COPII vesicle coat;0.0176646988329096!GO:0012507;ER to Golgi transport vesicle membrane;0.0176646988329096!GO:0043433;negative regulation of transcription factor activity;0.018060635925149!GO:0016570;histone modification;0.0181062001809499!GO:0033549;MAP kinase phosphatase activity;0.0181860335969899!GO:0017017;MAP kinase tyrosine/serine/threonine phosphatase activity;0.0181860335969899!GO:0030374;ligand-dependent nuclear receptor transcription coactivator activity;0.0182586180325558!GO:0042054;histone methyltransferase activity;0.0188536859711581!GO:0000776;kinetochore;0.0188732880876455!GO:0001772;immunological synapse;0.0188732880876455!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0189261008287519!GO:0007034;vacuolar transport;0.0192920009277305!GO:0003950;NAD+ ADP-ribosyltransferase activity;0.0192920009277305!GO:0006354;RNA elongation;0.0196730304511982!GO:0016791;phosphoric monoester hydrolase activity;0.0197220802579!GO:0033116;ER-Golgi intermediate compartment membrane;0.0200507980959672!GO:0031098;stress-activated protein kinase signaling pathway;0.0205457910475066!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0206432427473019!GO:0000428;DNA-directed RNA polymerase complex;0.0206432427473019!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.0206432427473019!GO:0032318;regulation of Ras GTPase activity;0.0213332099518277!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0214012877289876!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0214012877289876!GO:0005869;dynactin complex;0.0214521750000978!GO:0030134;ER to Golgi transport vesicle;0.0214521750000978!GO:0008094;DNA-dependent ATPase activity;0.0222691108819767!GO:0000082;G1/S transition of mitotic cell cycle;0.0224216712004808!GO:0033157;regulation of intracellular protein transport;0.0226555698718931!GO:0042306;regulation of protein import into nucleus;0.0226555698718931!GO:0006595;polyamine metabolic process;0.0235541373659037!GO:0007006;mitochondrial membrane organization and biogenesis;0.0238336469997828!GO:0005521;lamin binding;0.0243126691244497!GO:0016605;PML body;0.0248311167637808!GO:0046983;protein dimerization activity;0.025062155000116!GO:0015980;energy derivation by oxidation of organic compounds;0.0254506662992957!GO:0006497;protein amino acid lipidation;0.0255464468952656!GO:0016859;cis-trans isomerase activity;0.026676111712994!GO:0046578;regulation of Ras protein signal transduction;0.0267536172897594!GO:0043022;ribosome binding;0.0276781057389574!GO:0022890;inorganic cation transmembrane transporter activity;0.0278553568810101!GO:0006984;ER-nuclear signaling pathway;0.0279222276992654!GO:0046467;membrane lipid biosynthetic process;0.0280818977582024!GO:0045859;regulation of protein kinase activity;0.0281732399223531!GO:0045815;positive regulation of gene expression, epigenetic;0.0283907574227685!GO:0051540;metal cluster binding;0.028769415539974!GO:0051536;iron-sulfur cluster binding;0.028769415539974!GO:0045321;leukocyte activation;0.0293641348979662!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.0293641348979662!GO:0006839;mitochondrial transport;0.0298789035325418!GO:0051348;negative regulation of transferase activity;0.0300551494850714!GO:0016272;prefoldin complex;0.0304752948681986!GO:0004672;protein kinase activity;0.0304841185405208!GO:0001667;ameboidal cell migration;0.0310785029351317!GO:0032027;myosin light chain binding;0.0310785029351317!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0315683741407233!GO:0031647;regulation of protein stability;0.0316122955647677!GO:0042608;T cell receptor binding;0.0316793103007178!GO:0006626;protein targeting to mitochondrion;0.0318153411524976!GO:0004532;exoribonuclease activity;0.0319855791349009!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0319855791349009!GO:0009117;nucleotide metabolic process;0.0322711034310709!GO:0031325;positive regulation of cellular metabolic process;0.0323123809899758!GO:0042393;histone binding;0.0335670752192241!GO:0045185;maintenance of protein localization;0.0335949638693987!GO:0051249;regulation of lymphocyte activation;0.0336123554077714!GO:0005099;Ras GTPase activator activity;0.0336329786675962!GO:0006919;caspase activation;0.0337740883543127!GO:0051091;positive regulation of transcription factor activity;0.0342743396132007!GO:0008536;Ran GTPase binding;0.0342771031006599!GO:0050865;regulation of cell activation;0.034613354294229!GO:0005062;hematopoietin/interferon-class (D200-domain) cytokine receptor signal transducer activity;0.0349809418383292!GO:0032940;secretion by cell;0.0352321744497091!GO:0050863;regulation of T cell activation;0.0353878305825147!GO:0046426;negative regulation of JAK-STAT cascade;0.0365167953708021!GO:0004428;inositol or phosphatidylinositol kinase activity;0.0367177807167609!GO:0030968;unfolded protein response;0.0368433357408141!GO:0007254;JNK cascade;0.0375616901375587!GO:0031901;early endosome membrane;0.0375649444952577!GO:0006661;phosphatidylinositol biosynthetic process;0.037602036855529!GO:0031124;mRNA 3'-end processing;0.0376752057959812!GO:0006268;DNA unwinding during replication;0.038774513106474!GO:0000303;response to superoxide;0.040219656605609!GO:0030867;rough endoplasmic reticulum membrane;0.0405174049514474!GO:0045045;secretory pathway;0.0405174049514474!GO:0008637;apoptotic mitochondrial changes;0.0406452789855809!GO:0006278;RNA-dependent DNA replication;0.0406452789855809!GO:0051457;maintenance of protein localization in nucleus;0.041322783083653!GO:0005874;microtubule;0.0422965428328375!GO:0016455;RNA polymerase II transcription mediator activity;0.0422965428328375!GO:0000738;DNA catabolic process, exonucleolytic;0.0426971616628219!GO:0008408;3'-5' exonuclease activity;0.0427012597253736!GO:0006470;protein amino acid dephosphorylation;0.0427548534320007!GO:0019058;viral infectious cycle;0.0428171743715054!GO:0035258;steroid hormone receptor binding;0.0431712361869453!GO:0051056;regulation of small GTPase mediated signal transduction;0.0431712361869453!GO:0035026;leading edge cell differentiation;0.043315487203913!GO:0006301;postreplication repair;0.0438902450936925!GO:0030217;T cell differentiation;0.0453326411924434!GO:0008180;signalosome;0.0453851868318719!GO:0042147;retrograde transport, endosome to Golgi;0.0453851868318719!GO:0032507;maintenance of cellular protein localization;0.0453851868318719!GO:0046588;negative regulation of calcium-dependent cell-cell adhesion;0.0459595411858962!GO:0046586;regulation of calcium-dependent cell-cell adhesion;0.0459595411858962!GO:0046979;TAP2 binding;0.046476091398774!GO:0046977;TAP binding;0.046476091398774!GO:0046978;TAP1 binding;0.046476091398774!GO:0016407;acetyltransferase activity;0.0466246459896542!GO:0043281;regulation of caspase activity;0.046760098692699!GO:0016763;transferase activity, transferring pentosyl groups;0.0470275561477631!GO:0030041;actin filament polymerization;0.0470275561477631!GO:0030145;manganese ion binding;0.0483503893059245!GO:0000339;RNA cap binding;0.0488936693410565!GO:0004003;ATP-dependent DNA helicase activity;0.0496413614446246!GO:0030119;AP-type membrane coat adaptor complex;0.0498838505677954
|sample_id=11225
|sample_id=11225
|sample_note=
|sample_note=
Line 75: Line 105:
|sample_tissue=blood
|sample_tissue=blood
|top_motifs=PAX3,7:4.27376749486;FOXO1,3,4:3.57329905055;CREB1:3.40375886779;FOX{D1,D2}:3.33936645163;ATF4:3.17249672585;BPTF:3.06973216962;ATF5_CREB3:2.89674226251;RUNX1..3:2.79423052859;PITX1..3:2.70129129203;RFX2..5_RFXANK_RFXAP:2.52246214858;FOX{F1,F2,J1}:2.51981393367;FOXN1:2.49834628194;FOXP1:2.33318387029;CDX1,2,4:2.21803554574;ELF1,2,4:2.21118657184;DMAP1_NCOR{1,2}_SMARC:2.21103656783;ZBTB16:2.18096259982;RORA:2.13761589202;RFX1:1.89821617299;NKX6-1,2:1.83756541056;PAX4:1.81704307041;HMX1:1.81249355495;PAX2:1.8036186981;NFKB1_REL_RELA:1.74202420173;BREu{core}:1.71253729211;ETS1,2:1.70975291758;LEF1_TCF7_TCF7L1,2:1.62121780324;JUN:1.60122427962;IKZF2:1.57234728363;TGIF1:1.57060910515;FOX{I1,J2}:1.55383810968;ATF2:1.52191070654;PDX1:1.519047198;SPI1:1.35560781192;TOPORS:1.3218557876;NKX2-1,4:1.31135699926;IRF1,2:1.18037760723;SPIB:1.07680075537;GATA6:1.02258659165;HBP1_HMGB_SSRP1_UBTF:0.958505614433;AHR_ARNT_ARNT2:0.936332749297;T:0.907850754093;HIF1A:0.887015682263;PAX6:0.872064117079;TLX2:0.808026846304;CUX2:0.769109521166;NFATC1..3:0.747721657723;NFIL3:0.690381029629;HOX{A6,A7,B6,B7}:0.654558152095;SOX2:0.634529932148;ATF6:0.570974829933;ELK1,4_GABP{A,B1}:0.553786659092;EGR1..3:0.538789026004;ZEB1:0.527642491614;FOXA2:0.475141529606;AIRE:0.472658163154;MAFB:0.443954317671;PBX1:0.427985558147;SREBF1,2:0.425266348906;IRF7:0.41475810897;CRX:0.381735005222;HMGA1,2:0.375985762275;NKX3-1:0.357336954051;MYB:0.33790838644;SOX5:0.318644642577;TBX4,5:0.314823953866;SNAI1..3:0.311928825542;NFIX:0.294558079911;RREB1:0.265564258909;NANOG{mouse}:0.20218222661;STAT5{A,B}:0.148276335767;NKX2-2,8:0.139805844318;ZNF384:0.121591473764;NRF1:0.0990339668894;FOS_FOS{B,L1}_JUN{B,D}:0.0535433329556;YY1:0.0520267414185;FOSL2:0.0113069470236;EVI1:-0.0342040803268;EP300:-0.04478169847;E2F1..5:-0.0599242219436;STAT2,4,6:-0.0605628396852;NFY{A,B,C}:-0.105434164568;OCT4_SOX2{dimer}:-0.132992686394;DBP:-0.14393599208;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.156801947659;FOXP3:-0.156814606448;POU2F1..3:-0.191549477879;MYOD1:-0.216951033352;HOXA9_MEIS1:-0.228547140192;NR5A1,2:-0.240396459132;BACH2:-0.249941431006;NFE2L1:-0.259899031288;SMAD1..7,9:-0.274270416791;MYFfamily:-0.282251382418;HES1:-0.296744743936;ZFP161:-0.297133665996;VSX1,2:-0.302524854235;POU1F1:-0.324041000952;NFE2:-0.334227046364;MED-1{core}:-0.33684265638;STAT1,3:-0.343355823442;MZF1:-0.360200093853;LMO2:-0.36217854029;PRRX1,2:-0.371414057698;MTE{core}:-0.420429556588;FOXQ1:-0.425892991008;SRF:-0.433161368813;HLF:-0.442824436196;CEBPA,B_DDIT3:-0.444494671289;POU3F1..4:-0.445222572431;SPZ1:-0.450160791383;HNF4A_NR2F1,2:-0.478272946678;AR:-0.479388128286;NANOG:-0.505686947514;HNF1A:-0.507434918993;PPARG:-0.524489188211;GCM1,2:-0.564902359013;PATZ1:-0.575086661928;TFDP1:-0.605744707048;FOXM1:-0.613649619919;SOX17:-0.622018946582;ZNF143:-0.631662669645;NHLH1,2:-0.632037118597;PAX5:-0.649172544276;ALX4:-0.6723237626;SOX{8,9,10}:-0.704441747685;bHLH_family:-0.708152804916;TAL1_TCF{3,4,12}:-0.742366471593;GLI1..3:-0.748530073319;ALX1:-0.788408071208;FOXD3:-0.820462046768;GATA4:-0.830613070802;MEF2{A,B,C,D}:-0.847599791669;HOX{A5,B5}:-0.863690755514;MTF1:-0.871986481831;LHX3,4:-0.873016600889;RBPJ:-0.87700144953;NFE2L2:-0.899053492713;MAZ:-0.900603022547;FOXL1:-0.924233214022;RXRA_VDR{dimer}:-0.952215812222;MYBL2:-0.958894577516;ADNP_IRX_SIX_ZHX:-0.976953861888;ZBTB6:-0.984066060096;PAX8:-1.01214073724;TEF:-1.0170106973;GFI1:-1.04441546258;REST:-1.04825544233;SP1:-1.12785327255;HAND1,2:-1.15974374257;PRDM1:-1.16488079467;TFAP2B:-1.20537566273;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.25254132953;ZNF148:-1.26627156971;POU6F1:-1.30766403317;ZNF238:-1.3226407128;CDC5L:-1.32762815054;GFI1B:-1.35732748682;TP53:-1.3603918792;NR1H4:-1.39911058634;TBP:-1.41020958791;HIC1:-1.42837168547;GTF2A1,2:-1.47560003059;TFCP2:-1.48290080351;XCPE1{core}:-1.48508899271;ZIC1..3:-1.48560146306;UFEwm:-1.48975691924;POU5F1:-1.4930831633;ARID5B:-1.49458626892;ONECUT1,2:-1.51412779532;ZNF423:-1.5369242083;NKX2-3_NKX2-5:-1.55106337799;HSF1,2:-1.58778567201;TFAP4:-1.59850948855;GTF2I:-1.60144597391;TFAP2{A,C}:-1.61972855417;XBP1:-1.63441206139;NR6A1:-1.65324104167;EN1,2:-1.65928996628;TEAD1:-1.66905331135;TLX1..3_NFIC{dimer}:-1.67686538662;HOX{A4,D4}:-1.7554840268;KLF4:-1.81509263935;ESRRA:-1.83643036443;NR3C1:-2.06163015537;EBF1:-2.24441034995;GZF1:-2.28279954999;RXR{A,B,G}:-2.28849676601;NKX3-2:-2.34527933139;ESR1:-2.59610362318;IKZF1:-2.69673432008;PAX1,9:-2.79270781061
|top_motifs=PAX3,7:4.27376749486;FOXO1,3,4:3.57329905055;CREB1:3.40375886779;FOX{D1,D2}:3.33936645163;ATF4:3.17249672585;BPTF:3.06973216962;ATF5_CREB3:2.89674226251;RUNX1..3:2.79423052859;PITX1..3:2.70129129203;RFX2..5_RFXANK_RFXAP:2.52246214858;FOX{F1,F2,J1}:2.51981393367;FOXN1:2.49834628194;FOXP1:2.33318387029;CDX1,2,4:2.21803554574;ELF1,2,4:2.21118657184;DMAP1_NCOR{1,2}_SMARC:2.21103656783;ZBTB16:2.18096259982;RORA:2.13761589202;RFX1:1.89821617299;NKX6-1,2:1.83756541056;PAX4:1.81704307041;HMX1:1.81249355495;PAX2:1.8036186981;NFKB1_REL_RELA:1.74202420173;BREu{core}:1.71253729211;ETS1,2:1.70975291758;LEF1_TCF7_TCF7L1,2:1.62121780324;JUN:1.60122427962;IKZF2:1.57234728363;TGIF1:1.57060910515;FOX{I1,J2}:1.55383810968;ATF2:1.52191070654;PDX1:1.519047198;SPI1:1.35560781192;TOPORS:1.3218557876;NKX2-1,4:1.31135699926;IRF1,2:1.18037760723;SPIB:1.07680075537;GATA6:1.02258659165;HBP1_HMGB_SSRP1_UBTF:0.958505614433;AHR_ARNT_ARNT2:0.936332749297;T:0.907850754093;HIF1A:0.887015682263;PAX6:0.872064117079;TLX2:0.808026846304;CUX2:0.769109521166;NFATC1..3:0.747721657723;NFIL3:0.690381029629;HOX{A6,A7,B6,B7}:0.654558152095;SOX2:0.634529932148;ATF6:0.570974829933;ELK1,4_GABP{A,B1}:0.553786659092;EGR1..3:0.538789026004;ZEB1:0.527642491614;FOXA2:0.475141529606;AIRE:0.472658163154;MAFB:0.443954317671;PBX1:0.427985558147;SREBF1,2:0.425266348906;IRF7:0.41475810897;CRX:0.381735005222;HMGA1,2:0.375985762275;NKX3-1:0.357336954051;MYB:0.33790838644;SOX5:0.318644642577;TBX4,5:0.314823953866;SNAI1..3:0.311928825542;NFIX:0.294558079911;RREB1:0.265564258909;NANOG{mouse}:0.20218222661;STAT5{A,B}:0.148276335767;NKX2-2,8:0.139805844318;ZNF384:0.121591473764;NRF1:0.0990339668894;FOS_FOS{B,L1}_JUN{B,D}:0.0535433329556;YY1:0.0520267414185;FOSL2:0.0113069470236;EVI1:-0.0342040803268;EP300:-0.04478169847;E2F1..5:-0.0599242219436;STAT2,4,6:-0.0605628396852;NFY{A,B,C}:-0.105434164568;OCT4_SOX2{dimer}:-0.132992686394;DBP:-0.14393599208;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.156801947659;FOXP3:-0.156814606448;POU2F1..3:-0.191549477879;MYOD1:-0.216951033352;HOXA9_MEIS1:-0.228547140192;NR5A1,2:-0.240396459132;BACH2:-0.249941431006;NFE2L1:-0.259899031288;SMAD1..7,9:-0.274270416791;MYFfamily:-0.282251382418;HES1:-0.296744743936;ZFP161:-0.297133665996;VSX1,2:-0.302524854235;POU1F1:-0.324041000952;NFE2:-0.334227046364;MED-1{core}:-0.33684265638;STAT1,3:-0.343355823442;MZF1:-0.360200093853;LMO2:-0.36217854029;PRRX1,2:-0.371414057698;MTE{core}:-0.420429556588;FOXQ1:-0.425892991008;SRF:-0.433161368813;HLF:-0.442824436196;CEBPA,B_DDIT3:-0.444494671289;POU3F1..4:-0.445222572431;SPZ1:-0.450160791383;HNF4A_NR2F1,2:-0.478272946678;AR:-0.479388128286;NANOG:-0.505686947514;HNF1A:-0.507434918993;PPARG:-0.524489188211;GCM1,2:-0.564902359013;PATZ1:-0.575086661928;TFDP1:-0.605744707048;FOXM1:-0.613649619919;SOX17:-0.622018946582;ZNF143:-0.631662669645;NHLH1,2:-0.632037118597;PAX5:-0.649172544276;ALX4:-0.6723237626;SOX{8,9,10}:-0.704441747685;bHLH_family:-0.708152804916;TAL1_TCF{3,4,12}:-0.742366471593;GLI1..3:-0.748530073319;ALX1:-0.788408071208;FOXD3:-0.820462046768;GATA4:-0.830613070802;MEF2{A,B,C,D}:-0.847599791669;HOX{A5,B5}:-0.863690755514;MTF1:-0.871986481831;LHX3,4:-0.873016600889;RBPJ:-0.87700144953;NFE2L2:-0.899053492713;MAZ:-0.900603022547;FOXL1:-0.924233214022;RXRA_VDR{dimer}:-0.952215812222;MYBL2:-0.958894577516;ADNP_IRX_SIX_ZHX:-0.976953861888;ZBTB6:-0.984066060096;PAX8:-1.01214073724;TEF:-1.0170106973;GFI1:-1.04441546258;REST:-1.04825544233;SP1:-1.12785327255;HAND1,2:-1.15974374257;PRDM1:-1.16488079467;TFAP2B:-1.20537566273;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.25254132953;ZNF148:-1.26627156971;POU6F1:-1.30766403317;ZNF238:-1.3226407128;CDC5L:-1.32762815054;GFI1B:-1.35732748682;TP53:-1.3603918792;NR1H4:-1.39911058634;TBP:-1.41020958791;HIC1:-1.42837168547;GTF2A1,2:-1.47560003059;TFCP2:-1.48290080351;XCPE1{core}:-1.48508899271;ZIC1..3:-1.48560146306;UFEwm:-1.48975691924;POU5F1:-1.4930831633;ARID5B:-1.49458626892;ONECUT1,2:-1.51412779532;ZNF423:-1.5369242083;NKX2-3_NKX2-5:-1.55106337799;HSF1,2:-1.58778567201;TFAP4:-1.59850948855;GTF2I:-1.60144597391;TFAP2{A,C}:-1.61972855417;XBP1:-1.63441206139;NR6A1:-1.65324104167;EN1,2:-1.65928996628;TEAD1:-1.66905331135;TLX1..3_NFIC{dimer}:-1.67686538662;HOX{A4,D4}:-1.7554840268;KLF4:-1.81509263935;ESRRA:-1.83643036443;NR3C1:-2.06163015537;EBF1:-2.24441034995;GZF1:-2.28279954999;RXR{A,B,G}:-2.28849676601;NKX3-2:-2.34527933139;ESR1:-2.59610362318;IKZF1:-2.69673432008;PAX1,9:-2.79270781061
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11225-116C1;search_select_hide=table117:FF:11225-116C1
}}
}}

Latest revision as of 16:25, 3 June 2020

Name:CD4+ T Cells, donor1
Species:Human (Homo sapiens)
Library ID:CNhs10853
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueblood
dev stage53 years old adult
sexmale
age53
cell typet cell, CD4+
cell lineNA
company3HBiomedical
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberCD4T727
catalog number3H100-23-10
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005494
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs10853 CAGE DRX008176 DRR009048
Accession ID Hg19

Library idBAMCTSS
CNhs10853 DRZ000473 DRZ001858
Accession ID Hg38

Library idBAMCTSS
CNhs10853 DRZ011823 DRZ013208
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005494
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10009.TTAGGC sRNA-Seq DRX037129 DRR041495
Accession ID Hg19

Library idBAMCTSS
SRhi10009.TTAGGC DRZ007137


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0.339
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.139
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.232
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.632
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0.693
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40.0417
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.443
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0.526
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.765
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.667
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0.078
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0.71
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.101
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40.0148
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.0201
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0.472
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190.71
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.0352
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.0719
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140.638
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0.144
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.00231
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.502
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.365
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.583
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.297
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.0972
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0.574
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.0833
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.657
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.622
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.67
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0.677
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0.144
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.875
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0.551
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340.297
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340.078
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0.144
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10853

Jaspar motifP-value
MA0002.20.00226
MA0003.10.222
MA0004.10.945
MA0006.10.0677
MA0007.10.454
MA0009.10.0868
MA0014.10.961
MA0017.10.188
MA0018.24.65061e-9
MA0019.10.533
MA0024.10.869
MA0025.10.146
MA0027.10.933
MA0028.10.017
MA0029.10.404
MA0030.10.00766
MA0031.13.20978e-6
MA0035.20.209
MA0038.10.135
MA0039.20.584
MA0040.10.588
MA0041.10.279
MA0042.10.71
MA0043.17.59145e-4
MA0046.10.197
MA0047.20.139
MA0048.10.817
MA0050.19.26412e-6
MA0051.10.0182
MA0052.10.02
MA0055.10.957
MA0057.10.171
MA0058.10.924
MA0059.10.83
MA0060.10.366
MA0061.14.44245e-7
MA0062.26.78481e-11
MA0065.20.735
MA0066.10.601
MA0067.10.0114
MA0068.10.791
MA0069.10.86
MA0070.10.584
MA0071.10.72
MA0072.10.239
MA0073.10.905
MA0074.10.33
MA0076.10.00271
MA0077.10.0744
MA0078.10.931
MA0079.20.808
MA0080.22.57955e-9
MA0081.10.00984
MA0083.10.169
MA0084.10.257
MA0087.10.757
MA0088.10.76
MA0090.14.3739e-4
MA0091.10.164
MA0092.10.701
MA0093.10.979
MA0099.20.192
MA0100.10.631
MA0101.12.77728e-5
MA0102.20.968
MA0103.10.724
MA0104.20.278
MA0105.11.53562e-4
MA0106.10.0337
MA0107.16.3255e-5
MA0108.22.56528e-4
MA0111.10.439
MA0112.20.0595
MA0113.10.347
MA0114.10.221
MA0115.10.294
MA0116.10.233
MA0117.10.0371
MA0119.10.678
MA0122.10.879
MA0124.10.697
MA0125.10.0746
MA0131.10.064
MA0135.10.136
MA0136.14.08429e-16
MA0137.20.347
MA0138.20.0206
MA0139.10.762
MA0140.10.225
MA0141.10.0406
MA0142.10.122
MA0143.10.217
MA0144.10.44
MA0145.10.0164
MA0146.10.966
MA0147.10.336
MA0148.10.441
MA0149.10.817
MA0150.10.89
MA0152.10.0105
MA0153.10.211
MA0154.10.747
MA0155.10.166
MA0156.17.03042e-12
MA0157.16.82713e-5
MA0159.10.824
MA0160.10.406
MA0162.10.0745
MA0163.10.0533
MA0164.10.881
MA0258.10.514
MA0259.10.289



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10853

Novel motifP-value
10.847
100.0173
1000.857
1010.148
1020.874
1030.459
1040.956
1050.532
1060.718
1070.00919
1080.458
1090.929
110.699
1100.429
1110.754
1120.708
1130.282
1140.963
1150.227
1160.154
1170.00911
1180.616
1190.181
120.715
1200.359
1210.485
1220.946
1231.38178e-5
1240.818
1250.501
1260.862
1270.415
1280.536
1290.416
130.723
1300.292
1310.567
1320.281
1330.712
1340.946
1350.245
1360.925
1370.0264
1380.658
1390.168
140.674
1400.386
1410.727
1420.321
1430.0874
1440.815
1450.729
1460.537
1470.0193
1480.455
1490.194
150.456
1500.715
1510.641
1520.229
1530.444
1540.127
1550.0544
1560.904
1570.588
1580.00457
1590.96
160.219
1600.0936
1610.652
1620.0226
1630.794
1640.171
1650.965
1660.293
1670.136
1680.562
1690.1
170.582
180.494
190.0235
20.129
200.178
210.723
220.188
230.43
240.55
250.218
260.848
270.654
280.401
290.161
30.445
300.039
310.462
320.00196
330.555
340.24
350.242
360.119
370.789
380.652
390.27
40.933
400.417
410.201
420.184
430.813
440.548
450.136
460.918
470.538
480.938
490.176
50.715
500.483
510.827
520.586
530.234
540.833
550.909
560.761
570.785
580.248
590.153
60.973
600.814
610.218
620.379
630.802
640.993
650.396
660.782
670.47
680.574
690.496
70.721
700.169
710.356
720.586
730.452
740.969
750.0929
760.073
770.00437
780.765
790.959
80.311
800.0727
810.979
820.604
830.771
840.19
850.539
860.208
870.291
880.964
890.00312
90.564
900.121
910.785
920.996
930.871
940.466
950.629
960.884
970.348
980.471
992.77473e-5



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs10853


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000542 (lymphocyte)
0000219 (motile cell)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0002242 (nucleate cell)
0000255 (eukaryotic cell)
0000791 (mature alpha-beta T cell)
0000084 (T cell)
0000789 (alpha-beta T cell)
0002419 (mature T cell)
0000624 (CD4-positive, alpha-beta T cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000031 (CD4-positive T cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
CL:0000051 (common lymphoid progenitor)
CL:0000790 (immature alpha-beta T cell)

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