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{{f5samples
{{f5samples
|ancestors_in_anatomy_facet=UBERON:0000025,UBERON:0000033,UBERON:0000061,UBERON:0000073,UBERON:0000153,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000922,UBERON:0000923,UBERON:0000924,UBERON:0000955,UBERON:0001016,UBERON:0001017,UBERON:0001049,UBERON:0001062,UBERON:0001890,UBERON:0001894,UBERON:0001897,UBERON:0002050,UBERON:0002346,UBERON:0002532,UBERON:0002616,UBERON:0002780,UBERON:0003056,UBERON:0003075,UBERON:0003080,UBERON:0004121,UBERON:0005068,UBERON:0005291,UBERON:0005423,UBERON:0005743,UBERON:0006598,UBERON:0007023,UBERON:0007135,UBERON:0007284
|DRA_sample_Accession=CAGE@SAMD00005223
|ancestors_in_cell_lineage_facet=
|HumanCAGEScanFiles=NCig10026;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/thalamus%252c%2520adult%252c%2520donor10252.NCig10026.10154-103A1.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/thalamus%252c%2520adult%252c%2520donor10252.NCig10026.10154-103A1.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/thalamus%252c%2520adult%252c%2520donor10252.NCig10026.10154-103A1.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/thalamus%252c%2520adult%252c%2520donor10252.NCig10026.10154-103A1.hg19.GCTATA.pairs.bed.gz
|accession_numbers=CAGE;DRX008742;DRR009614;DRZ001039;DRZ002424;DRZ012389;DRZ013774
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0001897,UBERON:0001894,UBERON:0000479,UBERON:0004121,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002616,UBERON:0002780,UBERON:0002784,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0001890,UBERON:0010225
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010154
|comment=
|comment=
|created_by=
|created_by=
|creation_date=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr7:100065686..100065701,-!p2@TSC22D4!2.75!556.68!TSC22D4;;chr22:38380543..38380569,-!p1@SOX10!2.55!355.81!SOX10;;chr21:34442439..34442455,+!p1@OLIG1!2.53!339.26!OLIG1;;chr11:61520075..61520136,+!p1@C11orf9!2.32!420.46!C11orf9;;chr8:53322304..53322340,-!p1@ST18!2.19!154.84!ST18;;chr2:145277882..145277967,-!p3@ZEB2!1.99!161.56!ZEB2;;chr3:181429704..181429722,+!p1@SOX2!1.99!97.64!SOX2;;chr10:134599649..134599653,-!p1@NKX6-2!1.97!93.19!NKX6-2;;chr16:1031762..1031781,+!p1@SOX8!1.96!90.30!SOX8;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.96!89.37!PEG3;;chr21:34398234..34398250,+!p1@OLIG2!1.93!83.99!OLIG2;;chr8:53322347..53322378,-!p2@ST18!1.90!77.78!ST18;;chr12:26277817..26277863,-!p2@BHLHE41!1.89!101.47!BHLHE41;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.82!65.47!POU3F3;;chr12:26277956..26277980,-!p1@BHLHE41!1.79!210.38!BHLHE41;;chr21:34442540..34442560,+!p2@OLIG1!1.74!53.37!OLIG1;;chr10:48355030..48355090,+!p1@ZNF488!1.68!59.99!ZNF488;;chr12:106976678..106976708,+!p2@RFX4!1.64!42.92!RFX4;;chr19:46801639..46801699,+!p1@HIF3A!1.63!41.79!HIF3A;;chr11:113930425..113930471,+!p1@ZBTB16!1.61!56.78!ZBTB16;;chr9:114287433..114287513,+!p1@ZNF483!1.58!92.99!ZNF483;;chr3:126076242..126076257,-!p1@KLF15!1.58!45.92!KLF15;;chr16:85932760..85932775,+!p1@IRF8!1.54!34.03!IRF8;;chr1:214161272..214161322,+!p1@PROX1!1.53!46.13!PROX1;;chr12:54779511..54779577,-!p5@ZNF385A!1.53!33.10!ZNF385A;;chr11:47400078..47400106,-!p1@SPI1!1.51!31.34!SPI1;;chr2:95963052..95963106,+!p1@KCNIP3!1.47!28.34!KCNIP3;;chr15:80696703..80696754,+!p1@ARNT2!1.46!36.72!ARNT2;;chr4:81118647..81118666,+!p1@PRDM8!1.45!35.79!PRDM8;;chr19:13135386..13135435,+!p4@NFIX!1.45!27.10!NFIX;;chr9:77112244..77112262,+!p1@RORB!1.44!29.37!RORB;;chr3:181429741..181429767,+!p2@SOX2!1.42!25.13!SOX2;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.40!24.00!POU3F3;;chr15:80735246..80735321,+!p3@ARNT2!1.39!23.58!ARNT2;;chr11:31832862..31832884,-!p2@PAX6!1.38!23.17!PAX6;;chr19:30863271..30863338,+!p1@ZNF536!1.38!22.86!ZNF536;;chr17:53342311..53342400,+!p1@HLF!1.36!25.34!HLF;;chr7:63505799..63505904,+!p1@ZNF727!1.35!21.31!ZNF727;;chr12:106976774..106976788,+!p1@RFX4!1.33!20.48!RFX4;;chr6:19837592..19837621,+!p1@ID4!1.32!119.78!ID4;;chr1:61548069..61548102,+!p3@NFIA!1.32!47.58!NFIA;;chr10:64134120..64134183,+!p1@ZNF365!1.32!24.10!ZNF365;;chr14:33408072..33408114,+!p2@NPAS3!1.31!22.76!NPAS3;;chr19:46800289..46800327,+!p2@HIF3A!1.31!19.34!HIF3A;;chr14:29235961..29236008,+!p1@FOXG1!1.30!19.03!FOXG1;;chr14:33403881..33403924,+!p1@NPAS3!1.30!18.93!NPAS3;;chr14:29234581..29234601,+!p2@FOXG1!1.30!18.82!FOXG1;;chr22:41763452..41763466,+!p2@TEF!1.29!18.31!TEF;;chr2:214016314..214016343,-!p2@IKZF2!1.26!28.96!IKZF2;;chr12:26277929..26277955,-!p3@BHLHE41!1.26!24.41!BHLHE41;;chr16:51185172..51185197,-!p1@SALL1!1.26!17.07!SALL1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.25!16.96!ZBED1;;chr2:95963120..95963136,+!p2@KCNIP3!1.25!16.76!KCNIP3;;chr17:38219209..38219230,+!p1@THRA!1.24!209.14!THRA;;chr2:166326200..166326216,+!p1@CSRNP3!1.24!23.89!CSRNP3;;chr3:114819124..114819200,-!p3@ZBTB20!1.23!36.51!ZBTB20;;chr16:51185318..51185348,-!p2@SALL1!1.21!15.20!SALL1;;chr2:178128250..178128293,-!p6@NFE2L2!1.20!37.24!NFE2L2;;chr3:126076264..126076305,-!p2@KLF15!1.20!20.58!KLF15;;chr10:119302232..119302265,+!p1@EMX2!1.20!14.79!EMX2;;chr7:115670804..115670825,-!p1@TFEC!1.20!14.79!TFEC;;chr17:7492684..7492778,-!p2@SOX15!1.19!30.51!SOX15;;chr4:26344778..26344807,+!p8@RBPJ!1.19!14.58!RBPJ;;chr19:21512115..21512135,-!p3@ZNF708!1.18!28.75!ZNF708;;chr13:72441315..72441454,-!p1@DACH1!1.18!28.44!DACH1;;chr8:40755333..40755352,-!p1@ZMAT4!1.18!14.17!ZMAT4;;chr12:103351444..103351461,+!p1@ASCL1!1.18!14.07!ASCL1;;chr19:21512144..21512191,-!p2@ZNF708!1.16!62.58!ZNF708;;chr16:79634624..79634642,-!p1@MAF!1.16!53.06!MAF;;chr14:73360799..73360817,-!p1@DPF3!1.16!46.13!DPF3;;chr11:113930401..113930422,+!p3@ZBTB16!1.16!13.34!ZBTB16;;chrX:82763292..82763317,+!p1@POU3F4!1.16!13.34!POU3F4;;chr17:70117153..70117174,+!p1@SOX9!1.15!135.19!SOX9;;chr7:28725740..28725778,+!p1@CREB5!1.15!115.95!CREB5;;chr11:113930291..113930339,+!p2@ZBTB16!1.15!21.41!ZBTB16;;chr14:33403648..33403710,+!p3@NPAS3!1.15!13.24!NPAS3;;chr8:53322411..53322422,-!p6@ST18!1.14!12.93!ST18;;chr4:26344754..26344772,+!p10@RBPJ!1.14!12.83!RBPJ;;chr1:40105299..40105326,-!p1@HEYL!1.13!12.62!HEYL;;chr2:145275982..145276003,-!p7@ZEB2!1.13!12.52!ZEB2;;chr17:47439437..47439533,-!p1@ZNF652!1.12!98.88!ZNF652;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!1.12!12.31!SMARCE1;;chr15:57511609..57511651,+!p2@TCF12!1.11!20.07!TCF12;;chr6:126112074..126112144,+!p1@NCOA7!1.09!149.98!NCOA7;;chr19:38085768..38085821,+!p1@ZNF540!1.09!16.96!ZNF540;;chr16:67198633..67198671,+!p1@HSF4!1.09!11.38!HSF4;;chrX:25034067..25034088,-!p1@ARX!1.09!11.38!ARX;;chr20:21494654..21494678,-!p2@NKX2-2!1.09!11.17!NKX2-2;;chr5:71803177..71803255,-!p1@ZNF366!1.08!10.96!ZNF366;;chr6:28321971..28321995,-!p1@ZNF323!1.08!10.96!ZNF323;;chr19:57019215..57019250,+!p1@ZNF471!1.07!16.14!ZNF471;;chr3:114343039..114343085,-!p8@ZBTB20!1.07!10.86!ZBTB20;;chr9:14314946..14314983,-!p8@NFIB!1.07!10.65!NFIB;;chr11:31832658..31832681,-!p1@PAX6!1.06!10.55!PAX6;;chr21:34442584..34442587,+!p3@OLIG1!1.06!10.45!OLIG1;;chr19:53636125..53636178,-!p1@ZNF415!1.05!29.58!ZNF415;;chr18:52989031..52989079,-!p2@TCF4!1.05!24.51!TCF4;;chr19:21512202..21512225,-!p1@ZNF708!1.04!52.13!ZNF708;;chr3:114343768..114343822,-!p1@ZBTB20!1.04!44.06!ZBTB20;;chr20:50159198..50159299,-!p1@NFATC2!1.04!14.69!NFATC2;;chr8:53322384..53322393,-!p7@ST18!1.04!10.03!ST18;;chr7:64023410..64023428,-!p2@ZNF680!1.03!15.31!ZNF680;;chr10:111987079..111987115,+!p3@MXI1!1.03!13.45!MXI1;;chr6:126070769..126070801,+!p1@HEY2!1.02!10.86!HEY2;;chr19:57183114..57183145,-!p1@ZNF835!1.02!10.55!ZNF835;;chr2:68592406..68592424,+!p1@PLEK!1.02!9.52!PLEK;;chr19:13135582..13135600,+!p3@NFIX!1.02!9.41!NFIX;;chrX:70315688..70315709,+!p1@FOXO4!1.01!21.72!FOXO4;;chr18:6414884..6414942,-!p1@L3MBTL4!1.01!11.79!L3MBTL4;;chr18:55102598..55102623,+!p1@ONECUT2!1.01!9.31!ONECUT2;;chr12:106976656..106976672,+!p4@RFX4!1.01!9.31!RFX4;;chr9:126774018..126774055,+!p1@LHX2!1.01!9.31!LHX2;;chr3:114173720..114173794,-!p6@ZBTB20!1.00!9.00!ZBTB20;;chr8:30890810..30890880,-!p1@PURG!1.00!8.90!PURG;;chr11:8102846..8102892,+!p1@TUB!0.99!12.31!TUB;;chr2:60781201..60781258,-!p3@BCL11A!0.99!8.79!BCL11A;;chr21:39870339..39870443,-!p1@ERG!0.99!8.79!ERG;;chr7:50344289..50344323,+!p1@IKZF1!0.98!8.58!IKZF1;;chr14:29236269..29236285,+!p3@FOXG1!0.98!8.48!FOXG1;;chr8:80679993..80680011,-!p1@HEY1!0.97!12.31!HEY1;;chr16:86544113..86544145,+!p1@FOXF1!0.97!10.45!FOXF1;;chr1:170632285..170632309,+!p1@PRRX1!0.97!9.52!PRRX1;;chr2:177053386..177053402,+!p1@HOXD1!0.97!8.38!HOXD1;;chr16:67198683..67198698,+!p2@HSF4!0.97!8.27!HSF4;;chr15:57210961..57211012,+!p3@TCF12!0.96!27.00!TCF12;;chr11:47400062..47400077,-!p2@SPI1!0.96!8.17!SPI1;;chr1:8877692..8877732,-!p1@RERE!0.95!65.89!RERE;;chr7:64023441..64023462,-!p1@ZNF680!0.95!65.37!ZNF680;;chr5:178368186..178368238,+!p1@ZNF454!0.95!14.38!ZNF454;;chr7:86781858..86781879,+!p3@DMTF1!0.95!12.93!DMTF1;;chr20:2673383..2673441,+!p1@EBF4!0.95!12.62!EBF4;;chr12:125003087..125003141,-!p4@NCOR2!0.95!10.24!NCOR2;;chr9:1050331..1050363,+!p1@DMRT2!0.95!7.96!DMRT2;;chr12:103352277..103352324,+!p2@ASCL1!0.95!7.86!ASCL1;;chr3:187463179..187463201,-!p2@BCL6!0.94!32.89!BCL6;;chr14:21994337..21994442,-!p1@SALL2!0.94!22.13!SALL2;;chr16:79634595..79634620,-!p2@MAF!0.94!14.38!MAF;;chr5:139487363..139487444,+!p1@PURA!0.93!59.27!PURA;;chr3:114866084..114866118,-!p2@ZBTB20!0.93!27.93!ZBTB20;;chr6:91006518..91006570,-!p1@BACH2!0.93!17.89!BACH2;;chr5:124084493..124084524,-!p2@ZNF608!0.93!17.27!ZNF608;;chr6:41701581..41701613,-!p2@TFEB!0.93!7.55!TFEB;;chr18:55102628..55102646,+!p2@ONECUT2!0.93!7.55!ONECUT2;;chr6:41701898..41701939,-!p5@TFEB!0.93!7.45!TFEB;;chrX:101186981..101187030,-!p1@ZMAT1!0.92!24.72!ZMAT1;;chr3:52001396..52001425,-!p4@PCBP4!0.92!13.24!PCBP4;;chrX:107019163..107019179,-!p7@TSC22D3!0.92!8.48!TSC22D3;;chr8:10588010..10588030,-!p1@SOX7!0.92!7.34!SOX7;;chr10:64134045..64134083,+!p3@ZNF365!0.92!7.24!ZNF365;;chr17:17726907..17726958,-!p2@SREBF1!0.91!46.44!SREBF1;;chr17:38219184..38219195,+!p3@THRA!0.91!14.69!THRA;;chr2:113057415..113057477,+!p3@ZC3H6!0.91!9.52!ZC3H6;;chr12:24715376..24715432,-!p1@SOX5!0.91!9.10!SOX5;;chr5:88178983..88179012,-!p1@MEF2C!0.90!55.75!MEF2C;;chr8:77593474..77593612,+!p1@ZFHX4!0.90!30.41!ZFHX4;;chr5:124082322..124082364,-!p1@ZNF608!0.90!18.51!ZNF608;;chr19:9879350..9879419,-!p2@ZNF846!0.90!15.31!ZNF846;;chr18:47814186..47814232,-!p2@CXXC1!0.90!14.69!CXXC1;;chrX:107018969..107019024,-!p6@TSC22D3!0.90!9.72!TSC22D3;;chr13:95364784..95364806,-!p1@SOX21!0.90!7.03!SOX21;;chr12:24102576..24102623,-!p2@SOX5!0.90!6.93!SOX5;;chr16:4323246..4323299,-!p5@TFAP4!0.90!6.93!TFAP4;;chr9:73029219..73029289,-!p2@KLF9!0.89!21.20!KLF9;;chr2:74229812..74229867,+!p1@TET3!0.89!17.69!TET3;;chr2:2334997..2335053,-!p1@MYT1L!0.89!6.83!MYT1L;;chr19:57352109..57352153,-!p2@ZIM2!0.89!6.72!ZIM2;;chr15:42749722..42749739,-!p2@ZFP106!0.88!12.21!ZFP106;;chr1:61924375..61924380,+!p6@NFIA!0.88!9.52!NFIA;;chr2:176033066..176033087,-!p2@ATF2!0.88!8.69!ATF2;;chr8:145560111..145560165,-!p2@SCRT1!0.88!6.62!SCRT1;;chr3:147127142..147127168,+!p1@ZIC1!0.88!6.52!ZIC1;;chr15:31658288..31658338,+!p4@KLF13!0.88!6.52!KLF13;;chr10:111985777..111985788,+!p4@MXI1!0.88!6.52!MXI1;;chr14:22005197..22005261,-!p3@SALL2!0.88!6.52!SALL2;;chr1:165414325..165414369,-!p1@RXRG!0.87!6.41!RXRG;;chr5:172483347..172483407,+!p1@C5orf41!0.86!49.54!CREBRF;;chr19:20748574..20748599,-!p1@ZNF737!0.86!39.72!ZNF737;;chr3:52001426..52001447,-!p3@PCBP4!0.86!18.41!PCBP4;;chr15:61521417..61521460,-!p2@RORA!0.86!14.38!RORA;;chr15:80696666..80696700,+!p4@ARNT2!0.86!6.31!ARNT2;;chr12:26277798..26277809,-!p5@BHLHE41!0.86!6.31!BHLHE41;;chr16:51185439..51185450,-!p8@SALL1!0.86!6.21!SALL1;;chr19:22398550..22398579,-!p@chr19:22398550..22398579,-!0.86!6.21!ZNF676;;chr1:61547894..61547968,+!p2@NFIA!0.85!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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000955;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001890;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001894;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0010225
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0010316
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 34: Line 43:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/thalamus%252c%2520adult%252c%2520donor10252.CNhs12314.10154-103A1.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/thalamus%252c%2520adult%252c%2520donor10252.CNhs12314.10154-103A1.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/thalamus%252c%2520adult%252c%2520donor10252.CNhs12314.10154-103A1.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/thalamus%252c%2520adult%252c%2520donor10252.CNhs12314.10154-103A1.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/thalamus%252c%2520adult%252c%2520donor10252.CNhs12314.10154-103A1.hg38.nobarcode.ctss.bed.gz
|id=FF:10154-103A1
|id=FF:10154-103A1
|is_a=EFO:0002091;;FF:0000002;;FF:0000004;;FF:0000210;;FF:0010154
|is_a=EFO:0002091;;FF:0000002;;FF:0010154
|is_obsolete=
|library_id=CNhs12314
|library_id_phase_based=2:CNhs12314
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10154
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10154
|name=thalamus, adult, donor10252
|name=thalamus, adult, donor10252
|namespace=FANTOM5
|namespace=FANTOM5
Line 41: Line 62:
|profile_cagescan=NCig10026,,,
|profile_cagescan=NCig10026,,,
|profile_hcage=CNhs12314,LSID913,release011,COMPLETED
|profile_hcage=CNhs12314,LSID913,release011,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
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|rna_catalog_number=
Line 56: Line 80:
|rna_weight_ug=52.54575
|rna_weight_ug=52.54575
|sample_age=76
|sample_age=76
|sample_category=tissues
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|sample_cell_line=
Line 68: Line 93:
|sample_ethnicity=
|sample_ethnicity=
|sample_experimental_condition=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;9.96092089881837e-256!GO:0005737;cytoplasm;1.03418537264737e-143!GO:0043226;organelle;2.03790818543754e-116!GO:0043229;intracellular organelle;5.71811723863504e-116!GO:0043227;membrane-bound organelle;1.02821467492708e-110!GO:0043231;intracellular membrane-bound organelle;1.65688763416361e-110!GO:0044444;cytoplasmic part;7.9795284174651e-89!GO:0005515;protein binding;8.97162516379044e-73!GO:0044422;organelle part;1.48120691542839e-66!GO:0044446;intracellular organelle part;1.52196066789198e-65!GO:0032991;macromolecular complex;2.54388248894855e-56!GO:0016043;cellular component organization and biogenesis;3.24961205690368e-43!GO:0003723;RNA binding;2.09724873325443e-41!GO:0030529;ribonucleoprotein complex;1.71246064229307e-40!GO:0005634;nucleus;2.82347864935462e-38!GO:0044238;primary metabolic process;3.30949309485348e-38!GO:0044428;nuclear part;7.29678327203041e-38!GO:0043233;organelle lumen;7.29678327203041e-38!GO:0031974;membrane-enclosed lumen;7.29678327203041e-38!GO:0044237;cellular metabolic process;1.01601538238666e-36!GO:0005739;mitochondrion;8.52850841980588e-36!GO:0033036;macromolecule localization;1.00466959188311e-35!GO:0043170;macromolecule metabolic process;2.66293139705091e-35!GO:0015031;protein transport;1.05438380883005e-34!GO:0031090;organelle membrane;4.55561961300825e-33!GO:0008104;protein localization;3.09918590611834e-32!GO:0045184;establishment of protein localization;1.63220828628111e-31!GO:0043234;protein complex;2.99880299701844e-30!GO:0046907;intracellular transport;1.12777083599024e-29!GO:0016071;mRNA metabolic process;3.66792377614265e-29!GO:0006396;RNA processing;4.37909815070992e-27!GO:0008380;RNA splicing;3.05016861328817e-26!GO:0031975;envelope;7.60513475680261e-26!GO:0044429;mitochondrial part;1.09263307886449e-25!GO:0031967;organelle envelope;1.21983370851753e-25!GO:0019538;protein metabolic process;2.73915494602017e-25!GO:0043283;biopolymer metabolic process;2.14047287843697e-24!GO:0051649;establishment of cellular localization;3.64253481308299e-24!GO:0051641;cellular localization;5.91225874615335e-24!GO:0031981;nuclear lumen;6.26961919410678e-24!GO:0006397;mRNA processing;1.93355553672233e-23!GO:0005829;cytosol;2.93956406877719e-23!GO:0044260;cellular macromolecule metabolic process;2.30916087304391e-22!GO:0044267;cellular protein metabolic process;9.49339181525636e-22!GO:0016192;vesicle-mediated transport;1.10082364970544e-21!GO:0006886;intracellular protein transport;2.07939915687425e-21!GO:0006996;organelle organization and biogenesis;9.45913512333202e-21!GO:0010467;gene expression;1.52703211316429e-20!GO:0005840;ribosome;1.63818959264164e-19!GO:0005740;mitochondrial envelope;1.98475155780561e-18!GO:0005681;spliceosome;5.01586569158639e-18!GO:0031966;mitochondrial membrane;8.47312029064679e-18!GO:0006119;oxidative phosphorylation;1.99442522268571e-17!GO:0006412;translation;2.28782347136272e-17!GO:0000166;nucleotide binding;3.01659854614538e-17!GO:0019866;organelle inner membrane;3.39133053748477e-17!GO:0065003;macromolecular complex assembly;1.78718618264007e-16!GO:0005794;Golgi apparatus;3.09252965678683e-16!GO:0005743;mitochondrial inner membrane;3.88810871550991e-16!GO:0005654;nucleoplasm;1.54849720602491e-15!GO:0009058;biosynthetic process;5.46434404775618e-15!GO:0003735;structural constituent of ribosome;8.02324075272253e-15!GO:0022607;cellular component assembly;2.32377118816402e-14!GO:0006512;ubiquitin cycle;2.44472277587407e-14!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.44472277587407e-14!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.56277282203641e-14!GO:0016817;hydrolase activity, acting on acid anhydrides;3.07622809419531e-14!GO:0016462;pyrophosphatase activity;3.12775165305953e-14!GO:0044451;nucleoplasm part;3.61801291568039e-14!GO:0016874;ligase activity;7.5284896519197e-14!GO:0017111;nucleoside-triphosphatase activity;2.01886773336023e-13!GO:0043412;biopolymer modification;2.22019072048864e-13!GO:0044455;mitochondrial membrane part;2.23866023137053e-13!GO:0009059;macromolecule biosynthetic process;2.807261758141e-13!GO:0033279;ribosomal subunit;7.45033717475636e-13!GO:0031982;vesicle;7.77064581576425e-13!GO:0006464;protein modification process;1.17063851706467e-12!GO:0008134;transcription factor binding;1.23889954493345e-12!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.44873686739648e-12!GO:0012505;endomembrane system;1.5114885534023e-12!GO:0043687;post-translational protein modification;1.57553490614685e-12!GO:0050136;NADH dehydrogenase (quinone) activity;1.84005458934556e-12!GO:0003954;NADH dehydrogenase activity;1.84005458934556e-12!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.84005458934556e-12!GO:0005746;mitochondrial respiratory chain;2.05536001177416e-12!GO:0030695;GTPase regulator activity;2.08092594278085e-12!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.23471958159113e-12!GO:0044249;cellular biosynthetic process;2.68374852661986e-12!GO:0051603;proteolysis involved in cellular protein catabolic process;2.97661882657536e-12!GO:0006511;ubiquitin-dependent protein catabolic process;3.40570479385717e-12!GO:0031410;cytoplasmic vesicle;3.60148863762158e-12!GO:0006457;protein folding;4.37808755220883e-12!GO:0019941;modification-dependent protein catabolic process;4.40080024532253e-12!GO:0043632;modification-dependent macromolecule catabolic process;4.40080024532253e-12!GO:0032553;ribonucleotide binding;5.31692168678018e-12!GO:0032555;purine ribonucleotide binding;5.31692168678018e-12!GO:0044257;cellular protein catabolic process;5.47413909934813e-12!GO:0048770;pigment granule;1.22725345828167e-11!GO:0042470;melanosome;1.22725345828167e-11!GO:0031988;membrane-bound vesicle;1.2274360327945e-11!GO:0017076;purine nucleotide binding;2.04174302209217e-11!GO:0016070;RNA metabolic process;2.13405428938184e-11!GO:0043228;non-membrane-bound organelle;3.16997598381872e-11!GO:0043232;intracellular non-membrane-bound organelle;3.16997598381872e-11!GO:0044265;cellular macromolecule catabolic process;3.47662768560874e-11!GO:0016023;cytoplasmic membrane-bound vesicle;5.46385205782698e-11!GO:0030964;NADH dehydrogenase complex (quinone);9.30220801504855e-11!GO:0045271;respiratory chain complex I;9.30220801504855e-11!GO:0005747;mitochondrial respiratory chain complex I;9.30220801504855e-11!GO:0022618;protein-RNA complex assembly;1.45638911147093e-10!GO:0042775;organelle ATP synthesis coupled electron transport;1.84589697842052e-10!GO:0042773;ATP synthesis coupled electron transport;1.84589697842052e-10!GO:0043285;biopolymer catabolic process;1.96973480877448e-10!GO:0044445;cytosolic part;2.4638027663078e-10!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.57867735239467e-10!GO:0016604;nuclear body;4.11140732636006e-10!GO:0051082;unfolded protein binding;4.11460710282944e-10!GO:0048193;Golgi vesicle transport;4.45312577384272e-10!GO:0006605;protein targeting;4.47789071953364e-10!GO:0005768;endosome;5.25995562632282e-10!GO:0005830;cytosolic ribosome (sensu Eukaryota);5.72087042852638e-10!GO:0007264;small GTPase mediated signal transduction;6.33742747197305e-10!GO:0008092;cytoskeletal protein binding;7.26876214947294e-10!GO:0031980;mitochondrial lumen;9.14651170923316e-10!GO:0005759;mitochondrial matrix;9.14651170923316e-10!GO:0005083;small GTPase regulator activity;1.74028602675541e-09!GO:0030163;protein catabolic process;1.74822904879596e-09!GO:0016607;nuclear speck;1.76451065266861e-09!GO:0005783;endoplasmic reticulum;1.90925071393337e-09!GO:0008135;translation factor activity, nucleic acid binding;3.31100440257619e-09!GO:0006793;phosphorus metabolic process;4.92116079842059e-09!GO:0006796;phosphate metabolic process;4.92116079842059e-09!GO:0000502;proteasome complex (sensu Eukaryota);7.18272652814951e-09!GO:0044248;cellular catabolic process;8.73740884898313e-09!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;9.45388617040534e-09!GO:0016044;membrane organization and biogenesis;1.12907018628469e-08!GO:0048523;negative regulation of cellular process;1.24873364175189e-08!GO:0031252;leading edge;1.41403432081129e-08!GO:0003676;nucleic acid binding;1.41403432081129e-08!GO:0008565;protein transporter activity;1.52478813244468e-08!GO:0007010;cytoskeleton organization and biogenesis;1.70832948109481e-08!GO:0000398;nuclear mRNA splicing, via spliceosome;2.3767437887936e-08!GO:0000375;RNA splicing, via transesterification reactions;2.3767437887936e-08!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.3767437887936e-08!GO:0009057;macromolecule catabolic process;2.60919337352079e-08!GO:0019899;enzyme binding;2.92582865069264e-08!GO:0030036;actin cytoskeleton organization and biogenesis;3.04376553350478e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;3.13335139050983e-08!GO:0050794;regulation of cellular process;4.13515192297913e-08!GO:0003924;GTPase activity;4.3602949653719e-08!GO:0005730;nucleolus;4.36713966805055e-08!GO:0005635;nuclear envelope;5.14779726146185e-08!GO:0008639;small protein conjugating enzyme activity;6.30195978166678e-08!GO:0015935;small ribosomal subunit;6.7114962114696e-08!GO:0045045;secretory pathway;7.8747421354624e-08!GO:0019787;small conjugating protein ligase activity;8.08902935031498e-08!GO:0004842;ubiquitin-protein ligase activity;8.38327936180329e-08!GO:0019829;cation-transporting ATPase activity;9.37836504941316e-08!GO:0006461;protein complex assembly;9.96328814634578e-08!GO:0006913;nucleocytoplasmic transport;1.07898141823041e-07!GO:0031965;nuclear membrane;1.26935837290484e-07!GO:0050789;regulation of biological process;1.44541674661637e-07!GO:0006446;regulation of translational initiation;1.53443198898337e-07!GO:0005525;GTP binding;1.65597132774209e-07!GO:0051169;nuclear transport;1.78110029849679e-07!GO:0003712;transcription cofactor activity;2.43574095671095e-07!GO:0032559;adenyl ribonucleotide binding;2.52492773159643e-07!GO:0030029;actin filament-based process;3.15696021638244e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;4.56393243818419e-07!GO:0005524;ATP binding;5.59340907470119e-07!GO:0048519;negative regulation of biological process;5.76770987662589e-07!GO:0016881;acid-amino acid ligase activity;6.93035475366826e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;7.78003672621956e-07!GO:0003743;translation initiation factor activity;7.81451225186596e-07!GO:0030554;adenyl nucleotide binding;9.09330970409731e-07!GO:0015631;tubulin binding;9.21777786115954e-07!GO:0005096;GTPase activator activity;1.02456273765326e-06!GO:0044431;Golgi apparatus part;1.02456273765326e-06!GO:0016564;transcription repressor activity;1.05097504028048e-06!GO:0016568;chromatin modification;1.53532518971175e-06!GO:0006413;translational initiation;1.53532518971175e-06!GO:0015986;ATP synthesis coupled proton transport;2.19662097603545e-06!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.19662097603545e-06!GO:0032561;guanyl ribonucleotide binding;2.36620881713011e-06!GO:0019001;guanyl nucleotide binding;2.36620881713011e-06!GO:0016310;phosphorylation;2.42073840040966e-06!GO:0008047;enzyme activator activity;2.55530059550766e-06!GO:0015630;microtubule cytoskeleton;3.52871003542252e-06!GO:0044432;endoplasmic reticulum part;3.70942864254426e-06!GO:0005769;early endosome;3.73516128566824e-06!GO:0016887;ATPase activity;3.82607268103216e-06!GO:0012501;programmed cell death;4.28079380077314e-06!GO:0044440;endosomal part;4.28079380077314e-06!GO:0010008;endosome membrane;4.28079380077314e-06!GO:0008287;protein serine/threonine phosphatase complex;4.54472278671327e-06!GO:0006915;apoptosis;4.56682940750608e-06!GO:0006325;establishment and/or maintenance of chromatin architecture;4.98348341763682e-06!GO:0006259;DNA metabolic process;5.18160741880799e-06!GO:0045786;negative regulation of progression through cell cycle;5.4052279768248e-06!GO:0006897;endocytosis;6.54215248091766e-06!GO:0010324;membrane invagination;6.54215248091766e-06!GO:0051186;cofactor metabolic process;6.54215248091766e-06!GO:0008219;cell death;6.86198925957372e-06!GO:0016265;death;6.86198925957372e-06!GO:0015934;large ribosomal subunit;7.49637185493526e-06!GO:0048471;perinuclear region of cytoplasm;7.64347738388567e-06!GO:0051246;regulation of protein metabolic process;7.99170148610275e-06!GO:0005770;late endosome;8.02537838820267e-06!GO:0042623;ATPase activity, coupled;8.5305035170498e-06!GO:0006366;transcription from RNA polymerase II promoter;9.20918940982082e-06!GO:0003779;actin binding;9.64998173608567e-06!GO:0007265;Ras protein signal transduction;1.03664562784658e-05!GO:0007242;intracellular signaling cascade;1.03763745325837e-05!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.17941593293128e-05!GO:0017038;protein import;1.25434819719259e-05!GO:0044453;nuclear membrane part;1.61004518260664e-05!GO:0006323;DNA packaging;1.68237760547003e-05!GO:0009060;aerobic respiration;2.10913680044042e-05!GO:0046034;ATP metabolic process;2.16200060217711e-05!GO:0005761;mitochondrial ribosome;2.27672288021446e-05!GO:0000313;organellar ribosome;2.27672288021446e-05!GO:0016469;proton-transporting two-sector ATPase complex;2.43033229568322e-05!GO:0008017;microtubule binding;2.68312783120058e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;2.74326509657425e-05!GO:0045333;cellular respiration;2.77711285713073e-05!GO:0009150;purine ribonucleotide metabolic process;2.78156101298002e-05!GO:0032940;secretion by cell;2.80584545336976e-05!GO:0006163;purine nucleotide metabolic process;2.97401192107136e-05!GO:0005773;vacuole;2.99936208581872e-05!GO:0030027;lamellipodium;3.009751203693e-05!GO:0006403;RNA localization;3.27941663570714e-05!GO:0050657;nucleic acid transport;3.58623966537082e-05!GO:0051236;establishment of RNA localization;3.58623966537082e-05!GO:0050658;RNA transport;3.58623966537082e-05!GO:0048475;coated membrane;4.06439822909052e-05!GO:0030117;membrane coat;4.06439822909052e-05!GO:0051128;regulation of cellular component organization and biogenesis;4.09391869007382e-05!GO:0005905;coated pit;4.10446072751186e-05!GO:0009152;purine ribonucleotide biosynthetic process;4.11741355737887e-05!GO:0032446;protein modification by small protein conjugation;4.55199167723678e-05!GO:0006164;purine nucleotide biosynthetic process;4.61231283574597e-05!GO:0009056;catabolic process;4.88010445931671e-05!GO:0006754;ATP biosynthetic process;4.90921981638992e-05!GO:0006753;nucleoside phosphate metabolic process;4.90921981638992e-05!GO:0009259;ribonucleotide metabolic process;5.24981246438224e-05!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);5.36441857700575e-05!GO:0003714;transcription corepressor activity;5.74735663872978e-05!GO:0000245;spliceosome assembly;6.25650991089663e-05!GO:0009205;purine ribonucleoside triphosphate metabolic process;6.25650991089663e-05!GO:0009144;purine nucleoside triphosphate metabolic process;6.25650991089663e-05!GO:0000139;Golgi membrane;7.02345663694146e-05!GO:0045259;proton-transporting ATP synthase complex;7.16300353433198e-05!GO:0009199;ribonucleoside triphosphate metabolic process;7.18432965688086e-05!GO:0009055;electron carrier activity;7.22060474962485e-05!GO:0009141;nucleoside triphosphate metabolic process;7.56487155197714e-05!GO:0051056;regulation of small GTPase mediated signal transduction;7.56487155197714e-05!GO:0009966;regulation of signal transduction;7.93189541816375e-05!GO:0005643;nuclear pore;8.31562689801515e-05!GO:0006810;transport;8.67794260694248e-05!GO:0006099;tricarboxylic acid cycle;9.38576785171173e-05!GO:0046356;acetyl-CoA catabolic process;9.38576785171173e-05!GO:0042175;nuclear envelope-endoplasmic reticulum network;9.39248238889794e-05!GO:0015078;hydrogen ion transmembrane transporter activity;9.51533677237961e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;9.86418860840694e-05!GO:0005874;microtubule;0.000100163507240308!GO:0016567;protein ubiquitination;0.000101128412333341!GO:0005789;endoplasmic reticulum membrane;0.000120611406696656!GO:0065007;biological regulation;0.000120624282000034!GO:0031072;heat shock protein binding;0.000132640290560041!GO:0009260;ribonucleotide biosynthetic process;0.000162351224280606!GO:0001726;ruffle;0.000163709050564204!GO:0000151;ubiquitin ligase complex;0.000180279541657576!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;0.000183288935648593!GO:0009145;purine nucleoside triphosphate biosynthetic process;0.000183288935648593!GO:0043566;structure-specific DNA binding;0.000194288790776683!GO:0000323;lytic vacuole;0.00019781157975997!GO:0005764;lysosome;0.00019781157975997!GO:0000159;protein phosphatase type 2A complex;0.000210642806803183!GO:0009142;nucleoside triphosphate biosynthetic process;0.000210807700062195!GO:0009201;ribonucleoside triphosphate biosynthetic process;0.000210807700062195!GO:0030135;coated vesicle;0.000211586409981825!GO:0005085;guanyl-nucleotide exchange factor activity;0.000215059724630798!GO:0009892;negative regulation of metabolic process;0.000223036597854091!GO:0009109;coenzyme catabolic process;0.000249563957438513!GO:0019717;synaptosome;0.00025763126737869!GO:0006613;cotranslational protein targeting to membrane;0.000266022985500572!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000272689401637037!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.00028302776698926!GO:0031901;early endosome membrane;0.00028499166357965!GO:0051170;nuclear import;0.000318054858527832!GO:0006888;ER to Golgi vesicle-mediated transport;0.00032344375326975!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000326293413608838!GO:0006606;protein import into nucleus;0.000330646260769909!GO:0004721;phosphoprotein phosphatase activity;0.000335565710637817!GO:0016197;endosome transport;0.000353377205445009!GO:0005793;ER-Golgi intermediate compartment;0.000360242200216245!GO:0016481;negative regulation of transcription;0.000364205907089589!GO:0016791;phosphoric monoester hydrolase activity;0.000366198856856283!GO:0007399;nervous system development;0.000375343166742417!GO:0030120;vesicle coat;0.000375343166742417!GO:0030662;coated vesicle membrane;0.000375343166742417!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000396934433323951!GO:0015399;primary active transmembrane transporter activity;0.000396934433323951!GO:0003724;RNA helicase activity;0.000400440451290529!GO:0051028;mRNA transport;0.000412487189534633!GO:0051187;cofactor catabolic process;0.000442036818706835!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000445625240745435!GO:0006084;acetyl-CoA metabolic process;0.000456951729180177!GO:0006732;coenzyme metabolic process;0.000483119891806999!GO:0008601;protein phosphatase type 2A regulator activity;0.000516546734282648!GO:0051179;localization;0.00055514919287045!GO:0030867;rough endoplasmic reticulum membrane;0.000604294779481017!GO:0007049;cell cycle;0.000621740089460485!GO:0000902;cell morphogenesis;0.000639310103167995!GO:0032989;cellular structure morphogenesis;0.000639310103167995!GO:0005798;Golgi-associated vesicle;0.000658262303877746!GO:0031324;negative regulation of cellular metabolic process;0.000756253258120164!GO:0016311;dephosphorylation;0.0007614923062793!GO:0030532;small nuclear ribonucleoprotein complex;0.000792258430645514!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000827749307936939!GO:0006402;mRNA catabolic process;0.000851688381071387!GO:0008026;ATP-dependent helicase activity;0.000860536248153918!GO:0004386;helicase activity;0.000860536248153918!GO:0019208;phosphatase regulator activity;0.000945578104897408!GO:0003713;transcription coactivator activity;0.000962365485948318!GO:0043069;negative regulation of programmed cell death;0.000995519007597352!GO:0051726;regulation of cell cycle;0.00100243358806611!GO:0048468;cell development;0.0010162183287591!GO:0043492;ATPase activity, coupled to movement of substances;0.0010304499798188!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0010395060634434!GO:0051276;chromosome organization and biogenesis;0.00108335576469515!GO:0043066;negative regulation of apoptosis;0.00116053603534509!GO:0007019;microtubule depolymerization;0.00122539743322743!GO:0042802;identical protein binding;0.00123471685594778!GO:0005791;rough endoplasmic reticulum;0.00124812245411887!GO:0006916;anti-apoptosis;0.00129057420918957!GO:0000074;regulation of progression through cell cycle;0.00136227923354992!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00143751243214263!GO:0005839;proteasome core complex (sensu Eukaryota);0.00146371872666784!GO:0003729;mRNA binding;0.00150332123066583!GO:0019902;phosphatase binding;0.0015119759227504!GO:0045892;negative regulation of transcription, DNA-dependent;0.0015126789145686!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.00155187805909972!GO:0004812;aminoacyl-tRNA ligase activity;0.00155187805909972!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.00155187805909972!GO:0008654;phospholipid biosynthetic process;0.0016531680999359!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00174350744988263!GO:0006470;protein amino acid dephosphorylation;0.00175809661791718!GO:0003697;single-stranded DNA binding;0.00175809661791718!GO:0016363;nuclear matrix;0.00179679258159625!GO:0030865;cortical cytoskeleton organization and biogenesis;0.00180316901541019!GO:0051188;cofactor biosynthetic process;0.00180316901541019!GO:0006607;NLS-bearing substrate import into nucleus;0.00194263152384282!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.00198402697994749!GO:0043623;cellular protein complex assembly;0.00201817455203688!GO:0004722;protein serine/threonine phosphatase activity;0.00202319543060218!GO:0005099;Ras GTPase activator activity;0.002027301506975!GO:0005875;microtubule associated complex;0.00207431533325201!GO:0043209;myelin sheath;0.00212291453145614!GO:0051234;establishment of localization;0.00215463378669755!GO:0031111;negative regulation of microtubule polymerization or depolymerization;0.00219283301502873!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00219962357794496!GO:0019222;regulation of metabolic process;0.00220046299306442!GO:0005100;Rho GTPase activator activity;0.00232001929939727!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00235238751478453!GO:0030133;transport vesicle;0.00239100865128085!GO:0046578;regulation of Ras protein signal transduction;0.00239100865128085!GO:0008154;actin polymerization and/or depolymerization;0.00239238517559801!GO:0022890;inorganic cation transmembrane transporter activity;0.00259328548971375!GO:0065002;intracellular protein transport across a membrane;0.00259856242252575!GO:0005741;mitochondrial outer membrane;0.00262512764377127!GO:0043038;amino acid activation;0.00264894659750175!GO:0006418;tRNA aminoacylation for protein translation;0.00264894659750175!GO:0043039;tRNA aminoacylation;0.00264894659750175!GO:0051087;chaperone binding;0.00264894659750175!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.002651867014875!GO:0051129;negative regulation of cellular component organization and biogenesis;0.00278696827907535!GO:0008286;insulin receptor signaling pathway;0.00302865522082171!GO:0006612;protein targeting to membrane;0.00304044984983196!GO:0019867;outer membrane;0.00306280573842421!GO:0005938;cell cortex;0.00308821965023236!GO:0031968;organelle outer membrane;0.00310493375211082!GO:0051168;nuclear export;0.00330754651721014!GO:0005813;centrosome;0.0034391011509029!GO:0019888;protein phosphatase regulator activity;0.00346772723206199!GO:0031114;regulation of microtubule depolymerization;0.00375062818918901!GO:0007026;negative regulation of microtubule depolymerization;0.00375062818918901!GO:0008361;regulation of cell size;0.00375062818918901!GO:0008186;RNA-dependent ATPase activity;0.00375062818918901!GO:0007266;Rho protein signal transduction;0.00381409131231576!GO:0007243;protein kinase cascade;0.00392916466159755!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.00396248457590364!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00396248457590364!GO:0006401;RNA catabolic process;0.00398134519413855!GO:0042254;ribosome biogenesis and assembly;0.00403445225169012!GO:0019904;protein domain specific binding;0.00426346229651724!GO:0007272;ensheathment of neurons;0.00433772168863783!GO:0008366;axon ensheathment;0.00433772168863783!GO:0006650;glycerophospholipid metabolic process;0.00436357576025534!GO:0043087;regulation of GTPase activity;0.00449425516723825!GO:0022406;membrane docking;0.00468780483182283!GO:0048278;vesicle docking;0.00468780483182283!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00487545908202753!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00487545908202753!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00487545908202753!GO:0046930;pore complex;0.00514746791793527!GO:0008139;nuclear localization sequence binding;0.00538104865351938!GO:0048487;beta-tubulin binding;0.0054950143934141!GO:0050811;GABA receptor binding;0.00562153912798233!GO:0051920;peroxiredoxin activity;0.00574849845992274!GO:0031902;late endosome membrane;0.00577662858910255!GO:0006752;group transfer coenzyme metabolic process;0.00599464917917438!GO:0046467;membrane lipid biosynthetic process;0.0060496079034956!GO:0030118;clathrin coat;0.00611044561485886!GO:0006904;vesicle docking during exocytosis;0.0062322994365292!GO:0005815;microtubule organizing center;0.00642040318804554!GO:0030041;actin filament polymerization;0.00642040318804554!GO:0004298;threonine endopeptidase activity;0.00660592807668368!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.00663533174826704!GO:0042578;phosphoric ester hydrolase activity;0.00696218145558149!GO:0051789;response to protein stimulus;0.00699742067963325!GO:0006986;response to unfolded protein;0.00699742067963325!GO:0007034;vacuolar transport;0.00704990897640398!GO:0045187;regulation of circadian sleep/wake cycle, sleep;0.00704990897640398!GO:0004667;prostaglandin-D synthase activity;0.00704990897640398!GO:0050802;circadian sleep/wake cycle, sleep;0.00704990897640398!GO:0022410;circadian sleep/wake cycle process;0.00704990897640398!GO:0042749;regulation of circadian sleep/wake cycle;0.00704990897640398!GO:0004674;protein serine/threonine kinase activity;0.00723941914393456!GO:0003690;double-stranded DNA binding;0.0072481154047919!GO:0001508;regulation of action potential;0.00741482209921607!GO:0006974;response to DNA damage stimulus;0.00778130814531204!GO:0016050;vesicle organization and biogenesis;0.00833913342439829!GO:0001666;response to hypoxia;0.00833913342439829!GO:0005048;signal sequence binding;0.0085270968293921!GO:0043021;ribonucleoprotein binding;0.00855987603087552!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00859499714552256!GO:0005885;Arp2/3 protein complex;0.00859499714552256!GO:0016049;cell growth;0.00859499714552256!GO:0033673;negative regulation of kinase activity;0.00930306151334753!GO:0006469;negative regulation of protein kinase activity;0.00930306151334753!GO:0007050;cell cycle arrest;0.00944668881704684!GO:0051427;hormone receptor binding;0.00981907188646925!GO:0004004;ATP-dependent RNA helicase activity;0.00992058539375145!GO:0051261;protein depolymerization;0.0100405026512613!GO:0005774;vacuolar membrane;0.010598660755016!GO:0043005;neuron projection;0.0107967263981168!GO:0019783;small conjugating protein-specific protease activity;0.0109649755904975!GO:0016301;kinase activity;0.0110005035102772!GO:0015980;energy derivation by oxidation of organic compounds;0.0110080456882665!GO:0009108;coenzyme biosynthetic process;0.0112395370853469!GO:0005667;transcription factor complex;0.0119327945005339!GO:0006891;intra-Golgi vesicle-mediated transport;0.0123837824118357!GO:0048500;signal recognition particle;0.0127261523182271!GO:0006643;membrane lipid metabolic process;0.0129303994215448!GO:0007017;microtubule-based process;0.0131500040082068!GO:0051348;negative regulation of transferase activity;0.013557064414212!GO:0009117;nucleotide metabolic process;0.0140328255468551!GO:0043488;regulation of mRNA stability;0.0140328255468551!GO:0043487;regulation of RNA stability;0.0140328255468551!GO:0004843;ubiquitin-specific protease activity;0.0142711860855367!GO:0030742;GTP-dependent protein binding;0.0143291648874347!GO:0030320;cellular monovalent inorganic anion homeostasis;0.0144675789525613!GO:0055083;monovalent inorganic anion homeostasis;0.0144675789525613!GO:0055064;chloride ion homeostasis;0.0144675789525613!GO:0030644;cellular chloride ion homeostasis;0.0144675789525613!GO:0051539;4 iron, 4 sulfur cluster binding;0.0145243467809472!GO:0035257;nuclear hormone receptor binding;0.0165393436811389!GO:0050767;regulation of neurogenesis;0.0172303561779439!GO:0042026;protein refolding;0.0172303561779439!GO:0035035;histone acetyltransferase binding;0.0179625145154361!GO:0005869;dynactin complex;0.0185946722590699!GO:0030384;phosphoinositide metabolic process;0.0188897682522397!GO:0042981;regulation of apoptosis;0.0194055463347021!GO:0051252;regulation of RNA metabolic process;0.0194280007248783!GO:0043067;regulation of programmed cell death;0.0194753252563993!GO:0044448;cell cortex part;0.0196735565426708!GO:0004221;ubiquitin thiolesterase activity;0.019737716755084!GO:0000059;protein import into nucleus, docking;0.019737716755084!GO:0065009;regulation of a molecular function;0.019737716755084!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0201747079337416!GO:0005765;lysosomal membrane;0.0205758902369955!GO:0030258;lipid modification;0.0210143620217698!GO:0000118;histone deacetylase complex;0.0212312508413728!GO:0016563;transcription activator activity;0.021917043072818!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0220187935807046!GO:0008610;lipid biosynthetic process;0.0222288244270385!GO:0016740;transferase activity;0.0226676760576063!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.0228922804195987!GO:0030136;clathrin-coated vesicle;0.0234152935082525!GO:0031109;microtubule polymerization or depolymerization;0.0235009750273513!GO:0016126;sterol biosynthetic process;0.0236389241319996!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0239058706758296!GO:0001887;selenium metabolic process;0.0239300939614201!GO:0051540;metal cluster binding;0.0242269625090144!GO:0051536;iron-sulfur cluster binding;0.0242269625090144!GO:0006338;chromatin remodeling;0.024974662834304!GO:0030132;clathrin coat of coated pit;0.025382889848013!GO:0043681;protein import into mitochondrion;0.025382889848013!GO:0032011;ARF protein signal transduction;0.0261392814210928!GO:0032012;regulation of ARF protein signal transduction;0.0261392814210928!GO:0015629;actin cytoskeleton;0.0262903994762617!GO:0006414;translational elongation;0.0263360392929488!GO:0003702;RNA polymerase II transcription factor activity;0.026377858802844!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0267522248117506!GO:0033043;regulation of organelle organization and biogenesis;0.0267522248117506!GO:0030139;endocytic vesicle;0.0267588109652811!GO:0006364;rRNA processing;0.0268099723140916!GO:0019903;protein phosphatase binding;0.0269331591271091!GO:0015682;ferric iron transport;0.0274128527778017!GO:0015091;ferric iron transmembrane transporter activity;0.0274128527778017!GO:0031643;positive regulation of myelination;0.0274128527778017!GO:0017166;vinculin binding;0.0277617098815352!GO:0012506;vesicle membrane;0.0278327691341944!GO:0005788;endoplasmic reticulum lumen;0.0281581050272038!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0282546707765068!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0282546707765068!GO:0006333;chromatin assembly or disassembly;0.0285681688975731!GO:0000062;acyl-CoA binding;0.0288320554386559!GO:0022402;cell cycle process;0.0290690074147806!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0290690074147806!GO:0048154;S100 beta binding;0.0295021312047936!GO:0007041;lysosomal transport;0.0297134968062172!GO:0019911;structural constituent of myelin sheath;0.0298082968812299!GO:0030426;growth cone;0.0299138151896756!GO:0006376;mRNA splice site selection;0.0299138151896756!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0299138151896756!GO:0008022;protein C-terminus binding;0.0308505988659559!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0311396041105899!GO:0006383;transcription from RNA polymerase III promoter;0.031849034919196!GO:0016859;cis-trans isomerase activity;0.0321508446489642!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0324207943680579!GO:0045047;protein targeting to ER;0.0324207943680579!GO:0044437;vacuolar part;0.0330012758495371!GO:0006892;post-Golgi vesicle-mediated transport;0.0330994030195824!GO:0007005;mitochondrion organization and biogenesis;0.0337682402918409!GO:0051287;NAD binding;0.0337684317166785!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0343197369966063!GO:0031124;mRNA 3'-end processing;0.0344292285693115!GO:0000314;organellar small ribosomal subunit;0.0351516095380755!GO:0005763;mitochondrial small ribosomal subunit;0.0351516095380755!GO:0051020;GTPase binding;0.0356166797938095!GO:0006665;sphingolipid metabolic process;0.0365720613878391!GO:0008312;7S RNA binding;0.0366347608059188!GO:0005868;cytoplasmic dynein complex;0.0367467700689981!GO:0030880;RNA polymerase complex;0.0370601705298116!GO:0016072;rRNA metabolic process;0.0374800180356603!GO:0042552;myelination;0.0375666758721356!GO:0030425;dendrite;0.0385680462879774!GO:0003711;transcription elongation regulator activity;0.0385680462879774!GO:0030427;site of polarized growth;0.0385680462879774!GO:0046839;phospholipid dephosphorylation;0.0385680462879774!GO:0003746;translation elongation factor activity;0.0391322488885129!GO:0006399;tRNA metabolic process;0.0391322488885129!GO:0000287;magnesium ion binding;0.0428944765906959!GO:0003725;double-stranded RNA binding;0.0430763029219875!GO:0001558;regulation of cell growth;0.0435842484903907!GO:0007006;mitochondrial membrane organization and biogenesis;0.0435906906908821!GO:0030658;transport vesicle membrane;0.0437094759965216!GO:0005088;Ras guanyl-nucleotide exchange factor activity;0.0437759496249368!GO:0031110;regulation of microtubule polymerization or depolymerization;0.0453412320471473!GO:0030641;cellular hydrogen ion homeostasis;0.0460450054234646!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0465774560494935!GO:0006378;mRNA polyadenylation;0.0471205104103018
|sample_id=10154
|sample_id=10154
|sample_note=
|sample_note=
Line 75: Line 101:
|sample_tissue=thalamus
|sample_tissue=thalamus
|top_motifs=SOX2:3.86534744814;SOX5:3.461378557;SOX{8,9,10}:3.09131237355;NFIX:2.94021646835;MYFfamily:2.93576150708;HBP1_HMGB_SSRP1_UBTF:2.89669781429;RREB1:2.89633821491;GATA4:2.89168152212;RFX2..5_RFXANK_RFXAP:2.61044074327;REST:2.57231346844;NHLH1,2:2.5607509101;ATF2:2.52095823459;ZFP161:2.51673685259;MED-1{core}:2.51466038503;CUX2:2.43562026534;FOXP1:2.42931768205;OCT4_SOX2{dimer}:2.40134316771;NKX3-2:2.2780060286;BPTF:2.25911087748;POU6F1:2.24662935831;PRDM1:2.19253351869;GTF2I:2.17496988896;FOXD3:2.13077135139;PATZ1:2.05898430858;DBP:1.98473563488;EGR1..3:1.93322490048;SOX17:1.93298809858;ZBTB6:1.93287740301;ARID5B:1.91342742627;TGIF1:1.9134039267;NKX6-1,2:1.88650123925;MZF1:1.88351173408;AR:1.86319857637;HIC1:1.8526288816;RFX1:1.85226239342;MTE{core}:1.80643283838;FOX{F1,F2,J1}:1.78323369121;TLX2:1.76218839796;FOXQ1:1.75716920482;LMO2:1.75452461671;TOPORS:1.7531699191;RBPJ:1.74741141838;FOXO1,3,4:1.74240458395;PRRX1,2:1.73865327469;FOXP3:1.73292142514;XBP1:1.73273248671;NR3C1:1.73096885276;CDC5L:1.72772477622;TFAP2B:1.69639918585;EP300:1.68969369777;MTF1:1.61954206278;MAFB:1.60516782854;POU5F1:1.54220174082;PAX6:1.53888450981;MAZ:1.53744369173;PAX5:1.53390919096;ZNF384:1.52470334319;FOXM1:1.52122135983;FOX{D1,D2}:1.47533438504;ZBTB16:1.42992903412;PDX1:1.40677918781;SMAD1..7,9:1.39082980657;SREBF1,2:1.34092888057;KLF4:1.27671874952;PAX4:1.25609593413;AHR_ARNT_ARNT2:1.24969292119;LEF1_TCF7_TCF7L1,2:1.21627807951;NRF1:1.20465176948;IKZF2:1.18940682789;T:1.15142833167;ZNF143:1.14673237985;MYBL2:1.14205302851;SP1:1.11569873619;STAT1,3:1.11144470246;HOXA9_MEIS1:1.1061668124;BREu{core}:1.08132617195;NANOG:1.04201093525;ONECUT1,2:1.00367875468;FOX{I1,J2}:0.980330282306;TLX1..3_NFIC{dimer}:0.963841002374;NFIL3:0.963302737517;HOX{A4,D4}:0.878942601814;EBF1:0.85627075483;STAT2,4,6:0.816738132907;SPZ1:0.80672345186;ZNF238:0.788447877673;TFAP2{A,C}:0.782770643116;HOX{A6,A7,B6,B7}:0.776891423695;HSF1,2:0.772468778886;GFI1B:0.709879572147;ALX1:0.69412198059;GTF2A1,2:0.673867196038;ZNF423:0.664802351859;JUN:0.647784365095;IRF7:0.631974541939;GFI1:0.616598915499;HAND1,2:0.568877612431;HMGA1,2:0.562698995638;ADNP_IRX_SIX_ZHX:0.558139879816;CRX:0.536303133423;HMX1:0.506168617447;CREB1:0.500223759158;POU3F1..4:0.498375045498;CDX1,2,4:0.492595246325;TFDP1:0.466783909763;PITX1..3:0.455974197574;ZIC1..3:0.446591296831;GCM1,2:0.398553063571;VSX1,2:0.321283851455;GZF1:0.303046219818;NFY{A,B,C}:0.278991043386;POU1F1:0.242117517306;IRF1,2:0.19697155155;PAX2:0.191735868742;FOXN1:0.189192056296;NKX2-3_NKX2-5:0.138847031298;NFATC1..3:0.0905260462385;RORA:0.0830294578469;FOXA2:0.0700037378929;MEF2{A,B,C,D}:0.00750724260114;TEF:-0.00978290218878;ATF5_CREB3:-0.027934942277;YY1:-0.0536463804356;MYOD1:-0.0591893448349;NKX2-2,8:-0.0804177469975;ZEB1:-0.0818350477541;PBX1:-0.12695524709;XCPE1{core}:-0.169164543468;AIRE:-0.200327922624;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.214342890301;ESRRA:-0.240785127597;UFEwm:-0.253764276022;SPI1:-0.303233928358;LHX3,4:-0.339922685967;SPIB:-0.456046233536;ATF4:-0.468433198149;TFCP2:-0.4746165008;NFE2L2:-0.486198306177;bHLH_family:-0.487597841211;DMAP1_NCOR{1,2}_SMARC:-0.499672678596;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.501181702348;EVI1:-0.5129228136;ETS1,2:-0.515730001303;HNF4A_NR2F1,2:-0.584993766876;FOXL1:-0.603965871496;TFAP4:-0.621391429721;IKZF1:-0.630641321409;NR1H4:-0.631433531477;CEBPA,B_DDIT3:-0.692828151065;NKX3-1:-0.737287638028;HIF1A:-0.753751863979;GATA6:-0.779664964088;NR5A1,2:-0.779848923472;ALX4:-0.795069983465;TP53:-0.795452682741;NFE2:-0.804796788599;NANOG{mouse}:-0.828597520993;PAX1,9:-0.840322546375;TBX4,5:-0.844856496204;SNAI1..3:-0.86719056529;ELK1,4_GABP{A,B1}:-0.931731790618;TEAD1:-0.94362620792;ATF6:-0.945064676818;HNF1A:-0.974126739683;ELF1,2,4:-0.977366696876;NFE2L1:-0.985079705711;FOSL2:-1.01725604751;PAX8:-1.01765977071;RXR{A,B,G}:-1.0430676508;NKX2-1,4:-1.05072895944;E2F1..5:-1.064673931;NFKB1_REL_RELA:-1.0848600766;FOS_FOS{B,L1}_JUN{B,D}:-1.15796914862;PAX3,7:-1.16242993324;BACH2:-1.18898981375;MYB:-1.19671497429;RUNX1..3:-1.20470701193;HLF:-1.20507227615;TBP:-1.27630341695;ESR1:-1.28224355854;POU2F1..3:-1.40305926504;SRF:-1.47479103286;TAL1_TCF{3,4,12}:-1.47761562606;HES1:-1.51767600572;RXRA_VDR{dimer}:-1.52690884268;NR6A1:-1.52889065765;GLI1..3:-1.58244219217;ZNF148:-1.60205141033;STAT5{A,B}:-2.15241197602;EN1,2:-2.25625153805;HOX{A5,B5}:-2.79879489502;PPARG:-2.97514001391
|top_motifs=SOX2:3.86534744814;SOX5:3.461378557;SOX{8,9,10}:3.09131237355;NFIX:2.94021646835;MYFfamily:2.93576150708;HBP1_HMGB_SSRP1_UBTF:2.89669781429;RREB1:2.89633821491;GATA4:2.89168152212;RFX2..5_RFXANK_RFXAP:2.61044074327;REST:2.57231346844;NHLH1,2:2.5607509101;ATF2:2.52095823459;ZFP161:2.51673685259;MED-1{core}:2.51466038503;CUX2:2.43562026534;FOXP1:2.42931768205;OCT4_SOX2{dimer}:2.40134316771;NKX3-2:2.2780060286;BPTF:2.25911087748;POU6F1:2.24662935831;PRDM1:2.19253351869;GTF2I:2.17496988896;FOXD3:2.13077135139;PATZ1:2.05898430858;DBP:1.98473563488;EGR1..3:1.93322490048;SOX17:1.93298809858;ZBTB6:1.93287740301;ARID5B:1.91342742627;TGIF1:1.9134039267;NKX6-1,2:1.88650123925;MZF1:1.88351173408;AR:1.86319857637;HIC1:1.8526288816;RFX1:1.85226239342;MTE{core}:1.80643283838;FOX{F1,F2,J1}:1.78323369121;TLX2:1.76218839796;FOXQ1:1.75716920482;LMO2:1.75452461671;TOPORS:1.7531699191;RBPJ:1.74741141838;FOXO1,3,4:1.74240458395;PRRX1,2:1.73865327469;FOXP3:1.73292142514;XBP1:1.73273248671;NR3C1:1.73096885276;CDC5L:1.72772477622;TFAP2B:1.69639918585;EP300:1.68969369777;MTF1:1.61954206278;MAFB:1.60516782854;POU5F1:1.54220174082;PAX6:1.53888450981;MAZ:1.53744369173;PAX5:1.53390919096;ZNF384:1.52470334319;FOXM1:1.52122135983;FOX{D1,D2}:1.47533438504;ZBTB16:1.42992903412;PDX1:1.40677918781;SMAD1..7,9:1.39082980657;SREBF1,2:1.34092888057;KLF4:1.27671874952;PAX4:1.25609593413;AHR_ARNT_ARNT2:1.24969292119;LEF1_TCF7_TCF7L1,2:1.21627807951;NRF1:1.20465176948;IKZF2:1.18940682789;T:1.15142833167;ZNF143:1.14673237985;MYBL2:1.14205302851;SP1:1.11569873619;STAT1,3:1.11144470246;HOXA9_MEIS1:1.1061668124;BREu{core}:1.08132617195;NANOG:1.04201093525;ONECUT1,2:1.00367875468;FOX{I1,J2}:0.980330282306;TLX1..3_NFIC{dimer}:0.963841002374;NFIL3:0.963302737517;HOX{A4,D4}:0.878942601814;EBF1:0.85627075483;STAT2,4,6:0.816738132907;SPZ1:0.80672345186;ZNF238:0.788447877673;TFAP2{A,C}:0.782770643116;HOX{A6,A7,B6,B7}:0.776891423695;HSF1,2:0.772468778886;GFI1B:0.709879572147;ALX1:0.69412198059;GTF2A1,2:0.673867196038;ZNF423:0.664802351859;JUN:0.647784365095;IRF7:0.631974541939;GFI1:0.616598915499;HAND1,2:0.568877612431;HMGA1,2:0.562698995638;ADNP_IRX_SIX_ZHX:0.558139879816;CRX:0.536303133423;HMX1:0.506168617447;CREB1:0.500223759158;POU3F1..4:0.498375045498;CDX1,2,4:0.492595246325;TFDP1:0.466783909763;PITX1..3:0.455974197574;ZIC1..3:0.446591296831;GCM1,2:0.398553063571;VSX1,2:0.321283851455;GZF1:0.303046219818;NFY{A,B,C}:0.278991043386;POU1F1:0.242117517306;IRF1,2:0.19697155155;PAX2:0.191735868742;FOXN1:0.189192056296;NKX2-3_NKX2-5:0.138847031298;NFATC1..3:0.0905260462385;RORA:0.0830294578469;FOXA2:0.0700037378929;MEF2{A,B,C,D}:0.00750724260114;TEF:-0.00978290218878;ATF5_CREB3:-0.027934942277;YY1:-0.0536463804356;MYOD1:-0.0591893448349;NKX2-2,8:-0.0804177469975;ZEB1:-0.0818350477541;PBX1:-0.12695524709;XCPE1{core}:-0.169164543468;AIRE:-0.200327922624;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.214342890301;ESRRA:-0.240785127597;UFEwm:-0.253764276022;SPI1:-0.303233928358;LHX3,4:-0.339922685967;SPIB:-0.456046233536;ATF4:-0.468433198149;TFCP2:-0.4746165008;NFE2L2:-0.486198306177;bHLH_family:-0.487597841211;DMAP1_NCOR{1,2}_SMARC:-0.499672678596;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.501181702348;EVI1:-0.5129228136;ETS1,2:-0.515730001303;HNF4A_NR2F1,2:-0.584993766876;FOXL1:-0.603965871496;TFAP4:-0.621391429721;IKZF1:-0.630641321409;NR1H4:-0.631433531477;CEBPA,B_DDIT3:-0.692828151065;NKX3-1:-0.737287638028;HIF1A:-0.753751863979;GATA6:-0.779664964088;NR5A1,2:-0.779848923472;ALX4:-0.795069983465;TP53:-0.795452682741;NFE2:-0.804796788599;NANOG{mouse}:-0.828597520993;PAX1,9:-0.840322546375;TBX4,5:-0.844856496204;SNAI1..3:-0.86719056529;ELK1,4_GABP{A,B1}:-0.931731790618;TEAD1:-0.94362620792;ATF6:-0.945064676818;HNF1A:-0.974126739683;ELF1,2,4:-0.977366696876;NFE2L1:-0.985079705711;FOSL2:-1.01725604751;PAX8:-1.01765977071;RXR{A,B,G}:-1.0430676508;NKX2-1,4:-1.05072895944;E2F1..5:-1.064673931;NFKB1_REL_RELA:-1.0848600766;FOS_FOS{B,L1}_JUN{B,D}:-1.15796914862;PAX3,7:-1.16242993324;BACH2:-1.18898981375;MYB:-1.19671497429;RUNX1..3:-1.20470701193;HLF:-1.20507227615;TBP:-1.27630341695;ESR1:-1.28224355854;POU2F1..3:-1.40305926504;SRF:-1.47479103286;TAL1_TCF{3,4,12}:-1.47761562606;HES1:-1.51767600572;RXRA_VDR{dimer}:-1.52690884268;NR6A1:-1.52889065765;GLI1..3:-1.58244219217;ZNF148:-1.60205141033;STAT5{A,B}:-2.15241197602;EN1,2:-2.25625153805;HOX{A5,B5}:-2.79879489502;PPARG:-2.97514001391
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10154-103A1;search_select_hide=table117:FF:10154-103A1
}}
}}

Latest revision as of 12:22, 3 June 2020

Name:thalamus, adult, donor10252
Species:Human (Homo sapiens)
Library ID:CNhs12314
Sample type:tissues
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuethalamus
dev stageNA
sexfemale
age76
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyNA
collaborationPeter Heutink
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005223
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12314 CAGE DRX008742 DRR009614
Accession ID Hg19

Library idBAMCTSS
CNhs12314 DRZ001039 DRZ002424
Accession ID Hg38

Library idBAMCTSS
CNhs12314 DRZ012389 DRZ013774
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload
HumanCAGEScan Download raw sequence, BAM & CTSS

Library id3prime-FASTQ5prime-FASTQBAMCTSS
NCig10026downloaddownloaddownloaddownload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0.181
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.957
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.306
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0.0427
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0.286
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0.21
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.0817
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40.0427
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0.175
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0.0427
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.0817
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0.0427
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0.117
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0.389
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.0289
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.266
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.789
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.15
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40.0817
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.0678
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0.0427
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.0217
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.0427
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.86
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0.0427
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.229
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0.117
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.0427
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.0817
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0.0427
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0.237
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0.0427
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0.15
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.0526
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.0404
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0.487
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.107
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0.0427
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0.262
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.526
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.383
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial1.1
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.0817
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0.181
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0.35
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0.0817
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0.33
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0.237
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0.286
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0.752
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.117
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0.424
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0.0817
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12314

Jaspar motifP-value
MA0002.20.0437
MA0003.10.192
MA0004.10.323
MA0006.10.306
MA0007.10.518
MA0009.10.115
MA0014.10.704
MA0017.10.00114
MA0018.20.58
MA0019.10.921
MA0024.10.611
MA0025.10.962
MA0027.10.533
MA0028.10.0587
MA0029.10.0297
MA0030.10.108
MA0031.10.147
MA0035.20.00781
MA0038.10.272
MA0039.20.166
MA0040.10.844
MA0041.10.431
MA0042.10.923
MA0043.10.856
MA0046.10.00141
MA0047.20.468
MA0048.10.134
MA0050.10.145
MA0051.10.232
MA0052.10.542
MA0055.16.49112e-4
MA0057.10.804
MA0058.10.387
MA0059.10.0704
MA0060.10.356
MA0061.10.00352
MA0062.20.0029
MA0065.26.72148e-4
MA0066.10.00677
MA0067.10.886
MA0068.10.748
MA0069.10.77
MA0070.10.593
MA0071.10.0136
MA0072.10.349
MA0073.10.522
MA0074.10.243
MA0076.10.116
MA0077.10.00762
MA0078.10.805
MA0079.20.894
MA0080.21.05347e-6
MA0081.10.0249
MA0083.10.00698
MA0084.10.176
MA0087.10.287
MA0088.10.355
MA0090.10.193
MA0091.10.548
MA0092.10.214
MA0093.10.375
MA0099.21.36423e-24
MA0100.10.528
MA0101.10.00229
MA0102.20.103
MA0103.10.052
MA0104.20.406
MA0105.13.1952e-4
MA0106.10.0216
MA0107.10.00169
MA0108.20.0579
MA0111.10.782
MA0112.20.00106
MA0113.10.964
MA0114.10.00278
MA0115.10.746
MA0116.10.00375
MA0117.10.761
MA0119.10.254
MA0122.10.78
MA0124.10.93
MA0125.10.444
MA0131.10.937
MA0135.10.325
MA0136.11.48527e-10
MA0137.20.246
MA0138.20.549
MA0139.10.494
MA0140.10.00787
MA0141.10.0019
MA0142.10.429
MA0143.10.0387
MA0144.10.692
MA0145.10.276
MA0146.10.0319
MA0147.10.225
MA0148.10.422
MA0149.10.0137
MA0150.14.35556e-5
MA0152.10.571
MA0153.10.236
MA0154.10.0495
MA0155.10.57
MA0156.13.82932e-7
MA0157.10.68
MA0159.10.0115
MA0160.10.012
MA0162.10.131
MA0163.19.4947e-7
MA0164.10.679
MA0258.10.018
MA0259.10.724



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12314

Novel motifP-value
10.074
100.0567
1000.371
1010.401
1020.925
1030.0505
1040.104
1050.158
1060.0249
1070.129
1080.918
1099.81437e-4
110.00877
1100.0519
1110.219
1120.332
1130.332
1140.191
1150.823
1160.144
1170.0157
1180.27
1190.297
120.49
1200.206
1210.392
1220.828
1230.274
1240.266
1250.542
1260.046
1270.4
1280.169
1290.51
130.00362
1300.34
1310.0417
1320.425
1330.115
1340.472
1350.184
1368.82695e-4
1370.887
1380.915
1390.281
140.923
1400.982
1410.415
1420.353
1430.0409
1440.697
1450.29
1460.624
1470.804
1480.475
1490.28
150.0687
1500.108
1510.822
1520.0656
1530.89
1540.278
1550.958
1560.412
1570.409
1580.0857
1590.00477
160.0268
1600.237
1610.364
1620.654
1630.916
1640.0136
1650.168
1660.812
1670.903
1680.741
1690.0227
170.0905
180.0546
190.264
20.903
200.144
210.0383
220.227
230.389
240.0453
250.544
260.00313
270.517
280.855
290.00332
30.0684
300.925
310.91
320.00961
330.0461
340.675
350.614
360.241
370.0312
380.441
390.3
40.793
400.0541
410.312
420.265
430.141
440.123
450.68
460.0513
470.0791
480.063
490.384
50.928
500.481
510.387
520.592
530.474
540.536
550.727
560.596
570.405
580.362
590.0554
60.797
600.0864
610.137
620.207
630.338
640.138
650.266
660.112
670.329
680.446
690.262
70.121
700.0628
710.00918
720.272
730.0249
740.869
750.0263
760.332
770.118
780.00189
790.361
80.0604
800.437
810.509
820.636
830.0468
840.572
850.366
860.211
871.07957e-4
880.628
890.165
90.366
900.0702
910.737
920.448
930.904
940.209
950.0116
960.774
970.744
980.222
990.588



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12314


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0001897 (dorsal plus ventral thalamus)
0001894 (diencephalon)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0002784 (regional part of diencephalon)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0001890 (forebrain)
0010225 (thalamic complex)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010154 (human thalamus - adult donor sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)

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