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{{f5samples
{{f5samples
|id=FF:11406-118E2
|DRA_sample_Accession=CAGE@SAMD00005139
|name=Small Airway Epithelial Cells, donor3
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005139
|sample_id=11406
|accession_numbers=CAGE;DRX008466;DRR009338;DRZ000763;DRZ002148;DRZ012113;DRZ013498
|rna_tube_id=118E2
|accession_numbers_RNASeq=sRNA-Seq;DRX037246;DRR041612;DRZ007254
|rna_box=118
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0004119,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0000065,UBERON:0001004
|rna_position=E2
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000255,CL:0002076,CL:0002368
|sample_cell_lot=lot:8F3145
|sample_cell_catalog=CC-2547
|sample_company=Lonza
|rna_lot_number=
|rna_catalog_number=N/A
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=50 years old adult
|sample_tissue=lung
|sample_donor(cell lot)=
|sample_sex=male
|sample_age=50
|sample_ethnicity=C
|rna_rin=10
|rna_od260/230=2.09
|rna_od260/280=2.02
|sample_cell_type=pneumocyte
|sample_cell_line=
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_weight_ug=48.9
|rna_concentration=2.2
|sample_note=
|profile_hcage=CNhs12016,LSID837,release011,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=SRhi10014,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000063,CL:0000066,CL:0000144,CL:0000220,CL:0000223,CL:0000255,CL:0000548,CL:0002076,CL:0002321,CL:0002368,CL:0002371
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000065,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000480,UBERON:0000922,UBERON:0000923,UBERON:0000925,UBERON:0001004,UBERON:0001062,UBERON:0002050,UBERON:0002532,UBERON:0004119,UBERON:0005423
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000166
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chr11:34642612..34642646,+!p1@EHF!2.26!180.87!EHF;;chr1:209979467..209979494,-!p1@IRF6!2.13!149.71!IRF6;;chr17:7493405..7493419,-!p1@SOX15!2.05!110.77!SOX15;;chr3:189507432..189507459,+!p1@TP63!2.02!102.88!TP63;;chr1:6479968..6479986,-!p1@HES2!1.96!91.14!HES2;;chr17:7492684..7492778,-!p2@SOX15!1.74!111.88!SOX15;;chr15:83953397..83953425,-!p1@BNC1!1.73!60.39!BNC1;;chr12:54785074..54785122,-!p2@ZNF385A!1.68!70.30!ZNF385A;;chr6:10415276..10415341,-!p2@TFAP2A!1.59!45.93!TFAP2A;;chr5:2751762..2751784,-!p1@IRX2!1.59!37.83!IRX2;;chr6:10412600..10412637,-!p1@TFAP2A!1.55!56.45!TFAP2A;;chr12:54785054..54785072,-!p4@ZNF385A!1.49!33.99!ZNF385A;;chr13:73633131..73633149,+!p1@KLF5!1.48!294.87!KLF5;;chr1:209979411..209979433,-!p2@IRF6!1.46!28.12!IRF6;;chr17:80797886..80797906,-!p1@ZNF750!1.39!23.77!ZNF750;;chr20:22564895..22564910,-!p1@FOXA2!1.37!22.56!FOXA2;;chr5:134369905..134369972,-!p1@PITX1!1.36!32.98!PITX1;;chr1:201979703..201979721,+!p2@ELF3!1.35!21.55!ELF3;;chr5:2751785..2751808,-!p2@IRX2!1.32!19.73!IRX2;;chr8:102504651..102504683,+!p1@GRHL2!1.28!18.01!GRHL2;;chr2:10091815..10091864,+!p1@GRHL1!1.26!22.96!GRHL1;;chr14:37131058..37131139,+!p1@PAX9!1.24!16.19!PAX9;;chr19:45908292..45908374,-!p1@PPP1R13L!1.23!139.19!PPP1R13L;;chr2:46524897..46524911,+!p2@EPAS1!1.23!44.00!EPAS1;;chr5:134369879..134369898,-!p2@PITX1!1.22!15.68!PITX1;;chr8:10588010..10588030,-!p1@SOX7!1.19!14.47!SOX7;;chr1:201979743..201979762,+!p1@ELF3!1.16!13.56!ELF3;;chr20:22565370..22565388,-!p2@FOXA2!1.16!13.35!FOXA2;;chr6:1312325..1312340,+!p1@FOXQ1!1.13!20.64!FOXQ1;;chr6:34524093..34524135,-!p1@SPDEF!1.13!12.54!SPDEF;;chr14:62162285..62162296,+!p3@HIF1A!1.12!63.53!HIF1A;;chr6:10412576..10412599,-!p5@TFAP2A!1.12!12.14!TFAP2A;;chr20:22565185..22565223,-!p3@FOXA2!1.12!12.14!FOXA2;;chr11:34642656..34642667,+!p2@EHF!1.10!11.63!EHF;;chr14:37051798..37051831,-!p1@NKX2-8!1.10!11.63!NKX2-8;;chr22:19748231..19748317,+!p1@TBX1!1.03!9.81!TBX1;;chr6:10413188..10413249,-!p7@TFAP2A!1.02!9.51!TFAP2A;;chr2:70142232..70142251,+!p1@MXD1!1.00!51.49!MXD1;;chr14:38064429..38064486,-!p1@FOXA1!1.00!9.00!FOXA1;;chr6:10415484..10415508,-!p3@TFAP2A!0.99!8.80!TFAP2A;;chr11:129245526..129245553,+!p1@BARX2!0.98!8.60!BARX2;;chr11:34645791..34645836,+!p3@EHF!0.98!8.60!EHF;;chr16:86612320..86612394,+!p1@FOXL1!0.98!8.50!FOXL1;;chr12:80084737..80084763,-!p3@PAWR!0.97!32.27!PAWR;;chr6:34524049..34524089,-!p2@SPDEF!0.97!8.29!SPDEF;;chr15:83953373..83953386,-!p2@BNC1!0.97!8.29!BNC1;;chr21:40177845..40177863,+!p1@ETS2!0.96!490.41!ETS2;;chr14:62162258..62162269,+!p2@HIF1A!0.96!81.13!HIF1A;;chr19:33865009..33865090,+!p3@CEBPG!0.94!10.42!CEBPG;;chr12:27485762..27485776,+!p3@ARNTL2!0.90!19.42!ARNTL2;;chr3:189507460..189507471,+!p3@TP63!0.90!6.88!TP63;;chr1:24645832..24645853,+!p1@GRHL3!0.90!6.88!GRHL3;;chr7:113726357..113726443,+!p1@FOXP2!0.89!12.04!FOXP2;;chr2:122042770..122042785,-!p1@TFCP2L1!0.89!6.68!TFCP2L1;;chr16:79634624..79634642,-!p1@MAF!0.88!27.41!MAF;;chr2:238600933..238600985,+!p3@LRRFIP1!0.87!36.52!LRRFIP1;;chr4:57547454..57547469,-!p1@HOPX!0.86!6.27!HOPX;;chr6:10419768..10419819,-!p6@TFAP2A!0.86!6.27!TFAP2A;;chr19:9732460..9732472,-!p2@ZNF561!0.85!6.07!ZNF561;;chr2:239148671..239148686,-!p1@HES6!0.84!22.76!HES6;;chr1:158979872..158979898,+!p3@IFI16!0.82!18.51!IFI16;;chrY:21906594..21906622,-!p1@KDM5D!0.82!5.56!KDM5D;;chr18:19749541..19749557,+!p1@GATA6!0.80!18.01!GATA6;;chr1:935398..935465,-!p2@HES4!0.80!11.53!HES4;;chr6:34524025..34524045,-!p3@SPDEF!0.80!5.36!SPDEF;;chrY:2803415..2803468,+!p1@ZFY!0.80!5.26!ZFY;;chr1:209979449..209979460,-!p3@IRF6!0.80!5.26!IRF6;;chr13:73636252..73636307,+!p2@KLF5!0.79!6.17!KLF5;;chr12:27485823..27485868,+!p2@ARNTL2!0.78!22.25!ARNTL2;;chr3:138665969..138665993,-!p2@FOXL2!0.78!5.06!FOXL2;;chr3:189507523..189507535,+!p5@TP63!0.78!5.06!TP63;;chr20:18038521..18038571,-!p1@OVOL2!0.78!4.96!OVOL2;;chr8:49833948..49833973,-!p2@SNAI2!0.77!34.39!SNAI2;;chr20:55204351..55204377,+!p1@TFAP2C!0.77!6.37!TFAP2C;;chr21:40177892..40177903,+!p2@ETS2!0.76!20.84!ETS2;;chr1:154975229..154975247,+!p6@ZBTB7B!0.76!4.75!ZBTB7B;;chr9:110252035..110252057,-!p1@KLF4!0.75!82.04!KLF4;;chr2:46524878..46524891,+!p3@EPAS1!0.75!8.60!EPAS1;;chr7:17338239..17338262,+!p2@AHR!0.74!37.53!AHR;;chr3:5021026..5021035,+!p5@BHLHE40!0.74!5.66!BHLHE40;;chr7:97840743..97840786,+!p1@BHLHA15!0.74!4.55!BHLHA15;;chr11:65554528..65554546,+!p1@OVOL1!0.74!4.55!OVOL1;;chr20:22566120..22566136,-!p4@FOXA2!0.74!4.45!FOXA2;;chr1:935467..935484,-!p1@HES4!0.73!21.24!HES4;;chr12:53625966..53626012,-!p2@RARG!0.73!12.64!RARG;;chr8:49833978..49833996,-!p1@SNAI2!0.72!99.03!SNAI2;;chr6:126102292..126102329,+!p3@NCOA7!0.72!15.48!NCOA7;;chr7:17338266..17338282,+!p1@AHR!0.70!49.26!AHR;;chr14:61116183..61116208,-!p1@SIX1!0.70!17.10!SIX1;;chr1:24645921..24645973,+!p2@GRHL3!0.70!4.05!GRHL3;;chr1:158979792..158979814,+!p2@IFI16!0.69!42.49!IFI16;;chr3:138665937..138665968,-!p1@FOXL2!0.69!3.95!FOXL2;;chr17:45928443..45928473,-!p2@SP6!0.69!3.84!SP6;;chr19:45579725..45579743,-!p1@ZNF296!0.68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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000223;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002076;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002368;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000065
|ffid_belonging_in_development=CL:0000223
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 66: Line 43:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
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|comment=
|created_by=
|creation_date=
|def=
|has_quality=
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|name=Small Airway Epithelial Cells, donor3
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|rna_box=118
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|rna_concentration=2.2
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_lot_number=
|rna_od260/230=2.09
|rna_od260/280=2.02
|rna_position=E2
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|rna_tube_id=1.18E+04
|rna_weight_ug=48.9
|rnaseq_library_id=SRhi10014.GGTAGC
|sample_age=50
|sample_category=primary cells
|sample_cell_catalog=CC-2547
|sample_cell_line=
|sample_cell_lot=lot:8F3145
|sample_cell_type=pneumocyte
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=Lonza
|sample_description=
|sample_dev_stage=50 years old adult
|sample_disease=
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|sample_ethnicity=C
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|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;7.69725437540109e-231!GO:0005737;cytoplasm;7.33987265492203e-189!GO:0043226;organelle;1.86947703136413e-179!GO:0043229;intracellular organelle;8.23815926603579e-179!GO:0043231;intracellular membrane-bound organelle;4.64940450169826e-168!GO:0043227;membrane-bound organelle;7.54979104391736e-168!GO:0044444;cytoplasmic part;7.116862867929e-122!GO:0044422;organelle part;4.22076091708296e-115!GO:0044446;intracellular organelle part;1.06045056642113e-113!GO:0044238;primary metabolic process;4.7833667833353e-80!GO:0044237;cellular metabolic process;6.3772013645175e-80!GO:0005515;protein binding;1.61677498219024e-77!GO:0043170;macromolecule metabolic process;3.52814710252093e-76!GO:0032991;macromolecular complex;5.15217947405232e-74!GO:0030529;ribonucleoprotein complex;6.4418059982954e-70!GO:0005634;nucleus;8.86339652047188e-61!GO:0043233;organelle lumen;1.89550393215893e-59!GO:0031974;membrane-enclosed lumen;1.89550393215893e-59!GO:0003723;RNA binding;2.57412838164738e-59!GO:0044428;nuclear part;1.5404788093795e-54!GO:0019538;protein metabolic process;2.53264739018287e-54!GO:0031090;organelle membrane;4.23615244785206e-51!GO:0015031;protein transport;2.58739496931992e-48!GO:0033036;macromolecule localization;4.32977212525268e-48!GO:0044260;cellular macromolecule metabolic process;6.5314773438012e-48!GO:0044267;cellular protein metabolic process;8.69985759753895e-48!GO:0005739;mitochondrion;1.23826296751802e-47!GO:0008104;protein localization;5.46281429023719e-45!GO:0045184;establishment of protein localization;6.64798468060506e-45!GO:0005840;ribosome;2.98520160410632e-44!GO:0006412;translation;4.7345766755118e-44!GO:0043283;biopolymer metabolic process;3.33102166511303e-43!GO:0016043;cellular component organization and biogenesis;2.85852581319014e-42!GO:0010467;gene expression;7.24926501743713e-40!GO:0005829;cytosol;1.94705082417659e-38!GO:0003735;structural constituent of ribosome;2.00884748318828e-38!GO:0006396;RNA processing;3.99430455131115e-38!GO:0031981;nuclear lumen;9.88920018025144e-37!GO:0043234;protein complex;3.96252468590849e-36!GO:0009058;biosynthetic process;6.09118511791474e-36!GO:0009059;macromolecule biosynthetic process;2.99301561251209e-35!GO:0046907;intracellular transport;1.67297577413885e-34!GO:0033279;ribosomal subunit;2.7121680838732e-34!GO:0044249;cellular biosynthetic process;2.5417509813277e-33!GO:0044429;mitochondrial part;3.38512324494408e-32!GO:0016071;mRNA metabolic process;1.572370749636e-31!GO:0006886;intracellular protein transport;8.67138229819772e-31!GO:0031967;organelle envelope;6.54410805024448e-30!GO:0031975;envelope;1.18330707884106e-29!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.82698751036142e-29!GO:0065003;macromolecular complex assembly;1.11026581123932e-28!GO:0008380;RNA splicing;1.40402963312426e-28!GO:0005830;cytosolic ribosome (sensu Eukaryota);3.68509621838323e-26!GO:0006397;mRNA processing;9.86833279191586e-26!GO:0022607;cellular component assembly;1.81433337377417e-25!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.19155358630625e-25!GO:0043228;non-membrane-bound organelle;4.48288049817029e-25!GO:0043232;intracellular non-membrane-bound organelle;4.48288049817029e-25!GO:0012505;endomembrane system;4.60706424456986e-25!GO:0005654;nucleoplasm;1.52332098079405e-23!GO:0006996;organelle organization and biogenesis;7.87737834545467e-23!GO:0005783;endoplasmic reticulum;1.52144781888444e-22!GO:0051641;cellular localization;1.06867912933425e-21!GO:0051649;establishment of cellular localization;1.10447831456938e-21!GO:0005794;Golgi apparatus;1.64466957185683e-21!GO:0005740;mitochondrial envelope;2.58981064002261e-21!GO:0044445;cytosolic part;4.35081140851816e-21!GO:0005681;spliceosome;6.84915169965558e-20!GO:0006457;protein folding;8.35958294058974e-20!GO:0044451;nucleoplasm part;1.26083337839189e-19!GO:0031966;mitochondrial membrane;1.63999529359903e-19!GO:0006512;ubiquitin cycle;4.68785633348411e-19!GO:0048770;pigment granule;7.34605650582559e-19!GO:0042470;melanosome;7.34605650582559e-19!GO:0019866;organelle inner membrane;1.32217768390641e-18!GO:0016070;RNA metabolic process;1.41125771575916e-18!GO:0044432;endoplasmic reticulum part;3.19270549217146e-18!GO:0008134;transcription factor binding;3.4293420232867e-18!GO:0015935;small ribosomal subunit;5.71836706219127e-18!GO:0051603;proteolysis involved in cellular protein catabolic process;1.19592284166313e-17!GO:0006119;oxidative phosphorylation;1.20245001296587e-17!GO:0043412;biopolymer modification;1.31884583963681e-17!GO:0003676;nucleic acid binding;1.44082528691844e-17!GO:0043285;biopolymer catabolic process;1.46683415487774e-17!GO:0006511;ubiquitin-dependent protein catabolic process;1.64682406827183e-17!GO:0016874;ligase activity;1.64682406827183e-17!GO:0019941;modification-dependent protein catabolic process;2.08773885868447e-17!GO:0043632;modification-dependent macromolecule catabolic process;2.08773885868447e-17!GO:0015934;large ribosomal subunit;2.30268810398519e-17!GO:0022618;protein-RNA complex assembly;2.30907198327914e-17!GO:0005743;mitochondrial inner membrane;2.75252846322435e-17!GO:0044257;cellular protein catabolic process;3.29420920899036e-17!GO:0044265;cellular macromolecule catabolic process;7.89006702651463e-17!GO:0000166;nucleotide binding;1.27126625581819e-16!GO:0006464;protein modification process;1.28814184796287e-16!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;4.21262126784175e-16!GO:0016462;pyrophosphatase activity;4.21262126784175e-16!GO:0016817;hydrolase activity, acting on acid anhydrides;5.8432393163952e-16!GO:0030163;protein catabolic process;6.12005958161431e-16!GO:0006605;protein targeting;1.03745564514226e-15!GO:0017111;nucleoside-triphosphatase activity;1.82987325382595e-15!GO:0012501;programmed cell death;2.27295115242075e-15!GO:0009057;macromolecule catabolic process;3.03184434265246e-15!GO:0005730;nucleolus;4.14639555823515e-15!GO:0006915;apoptosis;4.58913375428843e-15!GO:0048193;Golgi vesicle transport;5.6865286766595e-15!GO:0044455;mitochondrial membrane part;6.23073170095092e-15!GO:0016192;vesicle-mediated transport;9.14434796768786e-15!GO:0043687;post-translational protein modification;2.17523192690375e-14!GO:0008135;translation factor activity, nucleic acid binding;2.7214842348533e-14!GO:0031980;mitochondrial lumen;8.8748448639838e-14!GO:0005759;mitochondrial matrix;8.8748448639838e-14!GO:0008219;cell death;1.26844313489055e-13!GO:0016265;death;1.26844313489055e-13!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.30153040847051e-13!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.32527087508216e-13!GO:0051082;unfolded protein binding;1.96903051611623e-13!GO:0005789;endoplasmic reticulum membrane;2.0636828902311e-13!GO:0006259;DNA metabolic process;6.10378980466458e-13!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);9.34273189191783e-13!GO:0044248;cellular catabolic process;1.51939102210979e-12!GO:0000502;proteasome complex (sensu Eukaryota);4.65651311701548e-12!GO:0005746;mitochondrial respiratory chain;4.90508659208632e-12!GO:0005761;mitochondrial ribosome;5.43572320375729e-12!GO:0000313;organellar ribosome;5.43572320375729e-12!GO:0003743;translation initiation factor activity;6.5885023807498e-12!GO:0003712;transcription cofactor activity;6.7434181127961e-12!GO:0006366;transcription from RNA polymerase II promoter;6.7434181127961e-12!GO:0006413;translational initiation;6.7434181127961e-12!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;7.79502036622962e-12!GO:0032553;ribonucleotide binding;1.12493708291095e-11!GO:0032555;purine ribonucleotide binding;1.12493708291095e-11!GO:0051186;cofactor metabolic process;1.26180256391918e-11!GO:0050136;NADH dehydrogenase (quinone) activity;2.02513727941873e-11!GO:0003954;NADH dehydrogenase activity;2.02513727941873e-11!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.02513727941873e-11!GO:0005768;endosome;3.72718158083178e-11!GO:0050794;regulation of cellular process;3.87312578108917e-11!GO:0017076;purine nucleotide binding;3.89728429863449e-11!GO:0048523;negative regulation of cellular process;6.3741559112317e-11!GO:0044431;Golgi apparatus part;6.99834986060396e-11!GO:0006446;regulation of translational initiation;8.11872045733209e-11!GO:0006913;nucleocytoplasmic transport;9.25853720764425e-11!GO:0006461;protein complex assembly;1.25671447874667e-10!GO:0016604;nuclear body;1.41731235169169e-10!GO:0051169;nuclear transport;1.74666462589375e-10!GO:0008639;small protein conjugating enzyme activity;2.20848603395165e-10!GO:0005793;ER-Golgi intermediate compartment;2.33087564056615e-10!GO:0043067;regulation of programmed cell death;3.55669593499814e-10!GO:0042981;regulation of apoptosis;3.55822938053611e-10!GO:0006732;coenzyme metabolic process;3.57110871678696e-10!GO:0008565;protein transporter activity;3.8861466151016e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;3.9995022095556e-10!GO:0004842;ubiquitin-protein ligase activity;4.41368869000336e-10!GO:0019787;small conjugating protein ligase activity;7.60145341113397e-10!GO:0000398;nuclear mRNA splicing, via spliceosome;7.86451263911254e-10!GO:0000375;RNA splicing, via transesterification reactions;7.86451263911254e-10!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;7.86451263911254e-10!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;8.35361258811245e-10!GO:0042775;organelle ATP synthesis coupled electron transport;8.97830345885348e-10!GO:0042773;ATP synthesis coupled electron transport;8.97830345885348e-10!GO:0030964;NADH dehydrogenase complex (quinone);1.17605297466362e-09!GO:0045271;respiratory chain complex I;1.17605297466362e-09!GO:0005747;mitochondrial respiratory chain complex I;1.17605297466362e-09!GO:0005635;nuclear envelope;1.62527488816706e-09!GO:0003924;GTPase activity;1.73306110956735e-09!GO:0048519;negative regulation of biological process;2.03485294094915e-09!GO:0009055;electron carrier activity;2.75786628351901e-09!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.98674744686174e-09!GO:0042254;ribosome biogenesis and assembly;3.64314850223112e-09!GO:0016607;nuclear speck;6.69126729388222e-09!GO:0051246;regulation of protein metabolic process;6.69126729388222e-09!GO:0016881;acid-amino acid ligase activity;6.69126729388222e-09!GO:0048475;coated membrane;8.33818440223588e-09!GO:0030117;membrane coat;8.33818440223588e-09!GO:0030120;vesicle coat;9.0668453666872e-09!GO:0030662;coated vesicle membrane;9.0668453666872e-09!GO:0000139;Golgi membrane;9.92078758154292e-09!GO:0031965;nuclear membrane;9.96650804041252e-09!GO:0017038;protein import;1.11403711063488e-08!GO:0006325;establishment and/or maintenance of chromatin architecture;1.60071918228478e-08!GO:0006888;ER to Golgi vesicle-mediated transport;2.58615530756606e-08!GO:0007049;cell cycle;3.04302035475194e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;3.33892498234317e-08!GO:0016023;cytoplasmic membrane-bound vesicle;3.46506707969335e-08!GO:0031988;membrane-bound vesicle;3.62234896027103e-08!GO:0005524;ATP binding;5.36904888063243e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;6.43116952575009e-08!GO:0006323;DNA packaging;6.54967957963754e-08!GO:0032559;adenyl ribonucleotide binding;7.45646029207579e-08!GO:0009056;catabolic process;9.20677242157503e-08!GO:0050789;regulation of biological process;1.32386131357235e-07!GO:0044453;nuclear membrane part;1.63543568658395e-07!GO:0016564;transcription repressor activity;1.70419679133251e-07!GO:0032446;protein modification by small protein conjugation;2.38425168961626e-07!GO:0031982;vesicle;2.72371278008747e-07!GO:0015986;ATP synthesis coupled proton transport;2.72371278008747e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.72371278008747e-07!GO:0030554;adenyl nucleotide binding;2.72677498814772e-07!GO:0051188;cofactor biosynthetic process;3.09001633109891e-07!GO:0007005;mitochondrion organization and biogenesis;3.09001633109891e-07!GO:0016567;protein ubiquitination;3.60838431496056e-07!GO:0043069;negative regulation of programmed cell death;3.98766946570428e-07!GO:0006793;phosphorus metabolic process;4.54801768119857e-07!GO:0006796;phosphate metabolic process;4.54801768119857e-07!GO:0031410;cytoplasmic vesicle;4.7707629446409e-07!GO:0005525;GTP binding;5.3160892397561e-07!GO:0019829;cation-transporting ATPase activity;6.07676163458475e-07!GO:0006163;purine nucleotide metabolic process;6.30055909587759e-07!GO:0043066;negative regulation of apoptosis;6.3451628754532e-07!GO:0006399;tRNA metabolic process;7.28698829834846e-07!GO:0003714;transcription corepressor activity;7.63745416110072e-07!GO:0009259;ribonucleotide metabolic process;8.39468044220353e-07!GO:0009142;nucleoside triphosphate biosynthetic process;9.51652617538273e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;9.51652617538273e-07!GO:0005773;vacuole;9.93753524190541e-07!GO:0019222;regulation of metabolic process;9.93753524190541e-07!GO:0009141;nucleoside triphosphate metabolic process;1.00219889733132e-06!GO:0009150;purine ribonucleotide metabolic process;1.01477627870482e-06!GO:0005643;nuclear pore;1.21779133303737e-06!GO:0044440;endosomal part;1.26873329527745e-06!GO:0010008;endosome membrane;1.26873329527745e-06!GO:0006164;purine nucleotide biosynthetic process;1.28165951037165e-06!GO:0006916;anti-apoptosis;1.34704362637857e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.34704362637857e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.34704362637857e-06!GO:0009199;ribonucleoside triphosphate metabolic process;1.49431536651089e-06!GO:0051276;chromosome organization and biogenesis;1.51682254855054e-06!GO:0006357;regulation of transcription from RNA polymerase II promoter;1.79237567042717e-06!GO:0009152;purine ribonucleotide biosynthetic process;2.02149185388764e-06!GO:0006974;response to DNA damage stimulus;2.07437428623752e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.13179479078602e-06!GO:0009144;purine nucleoside triphosphate metabolic process;2.13179479078602e-06!GO:0031324;negative regulation of cellular metabolic process;2.18212903484305e-06!GO:0005798;Golgi-associated vesicle;2.25122677727654e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;2.46772505901869e-06!GO:0065002;intracellular protein transport across a membrane;2.81429137021338e-06!GO:0009108;coenzyme biosynthetic process;2.82789990079122e-06!GO:0007264;small GTPase mediated signal transduction;2.82789990079122e-06!GO:0005770;late endosome;2.86997252850127e-06!GO:0051170;nuclear import;2.91340409779947e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;3.04792804916268e-06!GO:0004812;aminoacyl-tRNA ligase activity;3.04792804916268e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;3.04792804916268e-06!GO:0000074;regulation of progression through cell cycle;3.19729278163289e-06!GO:0005788;endoplasmic reticulum lumen;3.21879389744193e-06!GO:0051726;regulation of cell cycle;3.33398064156952e-06!GO:0006754;ATP biosynthetic process;3.55373552200863e-06!GO:0006753;nucleoside phosphate metabolic process;3.55373552200863e-06!GO:0009260;ribonucleotide biosynthetic process;3.58044198303615e-06!GO:0007249;I-kappaB kinase/NF-kappaB cascade;4.24399980856432e-06!GO:0016887;ATPase activity;4.38973486318387e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;5.0390001100645e-06!GO:0006606;protein import into nucleus;5.06567761206108e-06!GO:0009892;negative regulation of metabolic process;5.06724120908985e-06!GO:0006752;group transfer coenzyme metabolic process;5.09792085264202e-06!GO:0030532;small nuclear ribonucleoprotein complex;5.50474223288418e-06!GO:0045454;cell redox homeostasis;5.51995833724133e-06!GO:0031252;leading edge;5.77310232482688e-06!GO:0005667;transcription factor complex;6.02405139649098e-06!GO:0016568;chromatin modification;6.26034270079633e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;6.33498029443246e-06!GO:0043038;amino acid activation;7.09519738973546e-06!GO:0006418;tRNA aminoacylation for protein translation;7.09519738973546e-06!GO:0043039;tRNA aminoacylation;7.09519738973546e-06!GO:0046034;ATP metabolic process;7.40670447758528e-06!GO:0016072;rRNA metabolic process;7.40670447758528e-06!GO:0000323;lytic vacuole;7.63950904698237e-06!GO:0005764;lysosome;7.63950904698237e-06!GO:0042623;ATPase activity, coupled;7.90695033663086e-06!GO:0032561;guanyl ribonucleotide binding;8.17579688445152e-06!GO:0019001;guanyl nucleotide binding;8.17579688445152e-06!GO:0006364;rRNA processing;8.69953232649572e-06!GO:0050657;nucleic acid transport;9.18370096664986e-06!GO:0051236;establishment of RNA localization;9.18370096664986e-06!GO:0050658;RNA transport;9.18370096664986e-06!GO:0006403;RNA localization;9.23402114747676e-06!GO:0016469;proton-transporting two-sector ATPase complex;9.33868200749391e-06!GO:0045786;negative regulation of progression through cell cycle;9.4148721082036e-06!GO:0006613;cotranslational protein targeting to membrane;1.04159125264951e-05!GO:0048522;positive regulation of cellular process;1.40606220813454e-05!GO:0004386;helicase activity;1.49133912767935e-05!GO:0016310;phosphorylation;1.5919088915394e-05!GO:0008026;ATP-dependent helicase activity;2.00118237593658e-05!GO:0016740;transferase activity;2.19361020380887e-05!GO:0015078;hydrogen ion transmembrane transporter activity;2.42906555292278e-05!GO:0045259;proton-transporting ATP synthase complex;2.43558955344488e-05!GO:0007243;protein kinase cascade;2.52878702237071e-05!GO:0048471;perinuclear region of cytoplasm;2.58913554949669e-05!GO:0003713;transcription coactivator activity;2.62549601401158e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.72085745803817e-05!GO:0016481;negative regulation of transcription;3.03715369844521e-05!GO:0042802;identical protein binding;3.15295905659158e-05!GO:0046930;pore complex;3.24259375535509e-05!GO:0000151;ubiquitin ligase complex;3.24259375535509e-05!GO:0043623;cellular protein complex assembly;3.29842667833052e-05!GO:0009060;aerobic respiration;4.32451204303952e-05!GO:0019899;enzyme binding;4.58028114934341e-05!GO:0000245;spliceosome assembly;5.1801146478193e-05!GO:0016563;transcription activator activity;5.44959272661482e-05!GO:0005769;early endosome;5.72830716179323e-05!GO:0008654;phospholipid biosynthetic process;6.75011742243868e-05!GO:0008092;cytoskeletal protein binding;7.02189467688736e-05!GO:0043566;structure-specific DNA binding;8.02088197038704e-05!GO:0003724;RNA helicase activity;8.9161836379967e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;8.98043756979001e-05!GO:0022402;cell cycle process;9.58928433871936e-05!GO:0016787;hydrolase activity;9.94069709273895e-05!GO:0030118;clathrin coat;0.000105791078265844!GO:0005905;coated pit;0.00010726318223163!GO:0030867;rough endoplasmic reticulum membrane;0.000108247927938967!GO:0051427;hormone receptor binding;0.000110056152814152!GO:0016044;membrane organization and biogenesis;0.000110145019292777!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000129744418993597!GO:0006333;chromatin assembly or disassembly;0.000130961683310756!GO:0030036;actin cytoskeleton organization and biogenesis;0.000136372330959942!GO:0003697;single-stranded DNA binding;0.000141766377299062!GO:0016859;cis-trans isomerase activity;0.000146310791209003!GO:0005762;mitochondrial large ribosomal subunit;0.000147384272899043!GO:0000315;organellar large ribosomal subunit;0.000147384272899043!GO:0045333;cellular respiration;0.000147460019093103!GO:0065007;biological regulation;0.000149085414354379!GO:0033116;ER-Golgi intermediate compartment membrane;0.000150697351218138!GO:0006281;DNA repair;0.000155182565952797!GO:0051028;mRNA transport;0.000158415458257801!GO:0043065;positive regulation of apoptosis;0.000160480622957777!GO:0005839;proteasome core complex (sensu Eukaryota);0.000169269510709428!GO:0051789;response to protein stimulus;0.000173583146173876!GO:0006986;response to unfolded protein;0.000173583146173876!GO:0009719;response to endogenous stimulus;0.000187321898626916!GO:0043068;positive regulation of programmed cell death;0.000191693244126001!GO:0035257;nuclear hormone receptor binding;0.000195546096265833!GO:0019843;rRNA binding;0.000209973374072746!GO:0000785;chromatin;0.000222529912363306!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000225587291631328!GO:0065004;protein-DNA complex assembly;0.000235351400463763!GO:0048468;cell development;0.000249623246854976!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.000252817027800755!GO:0030658;transport vesicle membrane;0.000273353434196727!GO:0030133;transport vesicle;0.000282494221437157!GO:0006612;protein targeting to membrane;0.000294587029405602!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00030307381913169!GO:0004576;oligosaccharyl transferase activity;0.000312180940142349!GO:0009967;positive regulation of signal transduction;0.000326726287204326!GO:0031323;regulation of cellular metabolic process;0.000340184755203284!GO:0043021;ribonucleoprotein binding;0.000348334881023846!GO:0016853;isomerase activity;0.000367485794171196!GO:0005048;signal sequence binding;0.000383566997327214!GO:0008250;oligosaccharyl transferase complex;0.000391634011623439!GO:0051168;nuclear export;0.000426437785113568!GO:0005885;Arp2/3 protein complex;0.000435781554996485!GO:0016197;endosome transport;0.000471708709952962!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000477097804624484!GO:0001726;ruffle;0.000478763000974125!GO:0030119;AP-type membrane coat adaptor complex;0.000575282445682876!GO:0045893;positive regulation of transcription, DNA-dependent;0.000581209175432554!GO:0006402;mRNA catabolic process;0.000661836062491011!GO:0016491;oxidoreductase activity;0.000682598655639961!GO:0051187;cofactor catabolic process;0.000725870002172831!GO:0051128;regulation of cellular component organization and biogenesis;0.000729263978030855!GO:0048518;positive regulation of biological process;0.000736366847149595!GO:0065009;regulation of a molecular function;0.000759245973937314!GO:0000314;organellar small ribosomal subunit;0.000813840546314631!GO:0005763;mitochondrial small ribosomal subunit;0.000813840546314631!GO:0006099;tricarboxylic acid cycle;0.000825814848195482!GO:0046356;acetyl-CoA catabolic process;0.000825814848195482!GO:0030176;integral to endoplasmic reticulum membrane;0.000826198861073449!GO:0030660;Golgi-associated vesicle membrane;0.000869897047316378!GO:0009109;coenzyme catabolic process;0.000870778932710322!GO:0004298;threonine endopeptidase activity;0.00089327556585956!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000993061175499856!GO:0005741;mitochondrial outer membrane;0.00100482846566072!GO:0030132;clathrin coat of coated pit;0.00102101445731846!GO:0030029;actin filament-based process;0.00102517610318057!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00106186827399353!GO:0006350;transcription;0.0010694024460914!GO:0031072;heat shock protein binding;0.00107974757942093!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00109320543582967!GO:0030131;clathrin adaptor complex;0.00116346624148724!GO:0030659;cytoplasmic vesicle membrane;0.00122612373228219!GO:0009117;nucleotide metabolic process;0.00127097828151789!GO:0031968;organelle outer membrane;0.00135364066061863!GO:0004674;protein serine/threonine kinase activity;0.00139127677949556!GO:0019867;outer membrane;0.00139891475374738!GO:0005791;rough endoplasmic reticulum;0.00141279959178113!GO:0018196;peptidyl-asparagine modification;0.0014311404954231!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0014311404954231!GO:0006084;acetyl-CoA metabolic process;0.00143212649158419!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00146150327476161!GO:0051252;regulation of RNA metabolic process;0.00149932894018354!GO:0006979;response to oxidative stress;0.00150438875842751!GO:0043488;regulation of mRNA stability;0.00150438875842751!GO:0043487;regulation of RNA stability;0.00150438875842751!GO:0010468;regulation of gene expression;0.00150438875842751!GO:0006891;intra-Golgi vesicle-mediated transport;0.00152139857684838!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00154827803866032!GO:0045941;positive regulation of transcription;0.00155636199617069!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.00160771832319052!GO:0007006;mitochondrial membrane organization and biogenesis;0.00168620283871986!GO:0048500;signal recognition particle;0.00168860617647929!GO:0003729;mRNA binding;0.00198935770103463!GO:0051098;regulation of binding;0.00201174512313545!GO:0045892;negative regulation of transcription, DNA-dependent;0.00201174512313545!GO:0006401;RNA catabolic process;0.00203576936520796!GO:0008361;regulation of cell size;0.002141191513938!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00216834677649718!GO:0006839;mitochondrial transport;0.00240680244814556!GO:0030134;ER to Golgi transport vesicle;0.00247351136659236!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00252370820600603!GO:0051920;peroxiredoxin activity;0.0025630824299198!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00258535688135578!GO:0003690;double-stranded DNA binding;0.00258917380003509!GO:0030663;COPI coated vesicle membrane;0.00258917380003509!GO:0030126;COPI vesicle coat;0.00258917380003509!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00262227279751227!GO:0005813;centrosome;0.0026768695914212!GO:0030125;clathrin vesicle coat;0.00287398475070599!GO:0030665;clathrin coated vesicle membrane;0.00287398475070599!GO:0008186;RNA-dependent ATPase activity;0.00302414183849219!GO:0030127;COPII vesicle coat;0.00302414183849219!GO:0012507;ER to Golgi transport vesicle membrane;0.00302414183849219!GO:0016779;nucleotidyltransferase activity;0.00321322083541332!GO:0051101;regulation of DNA binding;0.00321708815069905!GO:0006626;protein targeting to mitochondrion;0.00329270412842919!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00329554471365591!GO:0043681;protein import into mitochondrion;0.00333272972683869!GO:0006917;induction of apoptosis;0.0033653134112492!GO:0045045;secretory pathway;0.0034042204010496!GO:0046474;glycerophospholipid biosynthetic process;0.00347424221118003!GO:0044433;cytoplasmic vesicle part;0.00354212994348849!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00354212994348849!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00354212994348849!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00354212994348849!GO:0016049;cell growth;0.00354212994348849!GO:0005694;chromosome;0.00356075965363697!GO:0006650;glycerophospholipid metabolic process;0.00377088367000792!GO:0030031;cell projection biogenesis;0.00394350811950086!GO:0007265;Ras protein signal transduction;0.004154068161747!GO:0008632;apoptotic program;0.00423846875854296!GO:0035258;steroid hormone receptor binding;0.00431730178185163!GO:0000049;tRNA binding;0.00440771690579893!GO:0008629;induction of apoptosis by intracellular signals;0.00454799547812872!GO:0001558;regulation of cell growth;0.00457743949632069!GO:0000059;protein import into nucleus, docking;0.00462490982865737!GO:0012502;induction of programmed cell death;0.00469798711922788!GO:0046489;phosphoinositide biosynthetic process;0.00482716082716307!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00492634285030671!GO:0045047;protein targeting to ER;0.00492634285030671!GO:0030833;regulation of actin filament polymerization;0.00521659635523277!GO:0008139;nuclear localization sequence binding;0.00530375925722157!GO:0030384;phosphoinositide metabolic process;0.00530375925722157!GO:0030137;COPI-coated vesicle;0.00532410405114822!GO:0006984;ER-nuclear signaling pathway;0.00535723247134283!GO:0012506;vesicle membrane;0.00556458346211953!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00557629597166128!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.00562147800015496!GO:0017166;vinculin binding;0.00563587194639697!GO:0016791;phosphoric monoester hydrolase activity;0.00580785920560308!GO:0008287;protein serine/threonine phosphatase complex;0.00582914870721259!GO:0008234;cysteine-type peptidase activity;0.00582914870721259!GO:0046983;protein dimerization activity;0.00599404895362337!GO:0006260;DNA replication;0.00621004047070956!GO:0046467;membrane lipid biosynthetic process;0.00648281022578751!GO:0007050;cell cycle arrest;0.0066690664171427!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00691151100313908!GO:0006509;membrane protein ectodomain proteolysis;0.00691151100313908!GO:0033619;membrane protein proteolysis;0.00691151100313908!GO:0048487;beta-tubulin binding;0.00704619581933872!GO:0015630;microtubule cytoskeleton;0.00743280558003407!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00747493382799683!GO:0006611;protein export from nucleus;0.00751205087132685!GO:0004004;ATP-dependent RNA helicase activity;0.0076364107332399!GO:0030521;androgen receptor signaling pathway;0.00771009471618448!GO:0006383;transcription from RNA polymerase III promoter;0.00779607452862321!GO:0003899;DNA-directed RNA polymerase activity;0.00793200187781508!GO:0015631;tubulin binding;0.0080443356969138!GO:0030027;lamellipodium;0.00812946149609296!GO:0006417;regulation of translation;0.00839342221319844!GO:0006091;generation of precursor metabolites and energy;0.00847754085869165!GO:0006354;RNA elongation;0.00858040797335292!GO:0006334;nucleosome assembly;0.0087500077909426!GO:0030503;regulation of cell redox homeostasis;0.00888959088805007!GO:0005815;microtubule organizing center;0.00893762805872645!GO:0016363;nuclear matrix;0.00897496166425433!GO:0008610;lipid biosynthetic process;0.00897496166425433!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00899377718070963!GO:0015399;primary active transmembrane transporter activity;0.00899377718070963!GO:0000278;mitotic cell cycle;0.00933033265694896!GO:0005684;U2-dependent spliceosome;0.00943689813280746!GO:0015980;energy derivation by oxidation of organic compounds;0.00953745886846641!GO:0030880;RNA polymerase complex;0.00967577826216536!GO:0006892;post-Golgi vesicle-mediated transport;0.00968171130809826!GO:0004721;phosphoprotein phosphatase activity;0.00968171130809826!GO:0008312;7S RNA binding;0.00969812560888914!GO:0006749;glutathione metabolic process;0.00981357623971797!GO:0008637;apoptotic mitochondrial changes;0.00982691028854655!GO:0031625;ubiquitin protein ligase binding;0.0100510023774738!GO:0032507;maintenance of cellular protein localization;0.0102963424136983!GO:0006414;translational elongation;0.0105371543713314!GO:0031902;late endosome membrane;0.0106098454622544!GO:0007010;cytoskeleton organization and biogenesis;0.0108559516050275!GO:0006351;transcription, DNA-dependent;0.0108559516050275!GO:0031497;chromatin assembly;0.0109352433416824!GO:0032774;RNA biosynthetic process;0.0115266783753294!GO:0016311;dephosphorylation;0.0117892573227371!GO:0003756;protein disulfide isomerase activity;0.0120010912926107!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0120010912926107!GO:0044427;chromosomal part;0.0123593064252142!GO:0003702;RNA polymerase II transcription factor activity;0.0124445670463785!GO:0031901;early endosome membrane;0.012583177616077!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0127283752202688!GO:0033043;regulation of organelle organization and biogenesis;0.0127283752202688!GO:0031529;ruffle organization and biogenesis;0.013203452976095!GO:0015992;proton transport;0.0132840413718522!GO:0051287;NAD binding;0.0133776848027127!GO:0003711;transcription elongation regulator activity;0.0137916864334362!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0138668116676395!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0138668116676395!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0138843387688919!GO:0007242;intracellular signaling cascade;0.0138940119658566!GO:0046822;regulation of nucleocytoplasmic transport;0.0140078643515766!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0143368381182554!GO:0051087;chaperone binding;0.0147509527955244!GO:0006818;hydrogen transport;0.0149908365229471!GO:0048144;fibroblast proliferation;0.0151047034264101!GO:0048145;regulation of fibroblast proliferation;0.0151047034264101!GO:0016272;prefoldin complex;0.0152565853308558!GO:0030433;ER-associated protein catabolic process;0.0153739614779579!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0153739614779579!GO:0030518;steroid hormone receptor signaling pathway;0.0156284830637287!GO:0050681;androgen receptor binding;0.0159016884155433!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0159458113042062!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0166485303014999!GO:0000428;DNA-directed RNA polymerase complex;0.0166485303014999!GO:0033673;negative regulation of kinase activity;0.016738445207099!GO:0006469;negative regulation of protein kinase activity;0.016738445207099!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.016738445207099!GO:0043022;ribosome binding;0.01731933849439!GO:0016251;general RNA polymerase II transcription factor activity;0.0177460620613002!GO:0005774;vacuolar membrane;0.0183004635715967!GO:0045334;clathrin-coated endocytic vesicle;0.0191474225455346!GO:0006352;transcription initiation;0.0192851692500341!GO:0008154;actin polymerization and/or depolymerization;0.0193464241032313!GO:0032984;macromolecular complex disassembly;0.0196350595679142!GO:0048146;positive regulation of fibroblast proliferation;0.0197976980909774!GO:0035035;histone acetyltransferase binding;0.0203419346884544!GO:0006595;polyamine metabolic process;0.0205014018351518!GO:0000159;protein phosphatase type 2A complex;0.0206011022373082!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0209598164981417!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0211374784685523!GO:0032535;regulation of cellular component size;0.0211374784685523!GO:0000096;sulfur amino acid metabolic process;0.0212486559117662!GO:0030041;actin filament polymerization;0.0213742702021528!GO:0019783;small conjugating protein-specific protease activity;0.0214036944281962!GO:0008033;tRNA processing;0.0214776795560325!GO:0051235;maintenance of localization;0.0214776795560325!GO:0006643;membrane lipid metabolic process;0.0221528047238579!GO:0007034;vacuolar transport;0.0222501761333957!GO:0030832;regulation of actin filament length;0.0223567981065154!GO:0043071;positive regulation of non-apoptotic programmed cell death;0.0225120742043819!GO:0004722;protein serine/threonine phosphatase activity;0.0227769184304296!GO:0016584;nucleosome positioning;0.0229185410639157!GO:0043621;protein self-association;0.0231525134204501!GO:0045926;negative regulation of growth;0.023317931701613!GO:0043624;cellular protein complex disassembly;0.0235030939931367!GO:0032940;secretion by cell;0.0236494515998486!GO:0051651;maintenance of cellular localization;0.0236494515998486!GO:0045792;negative regulation of cell size;0.0241130407220182!GO:0006497;protein amino acid lipidation;0.0246285916216751!GO:0030140;trans-Golgi network transport vesicle;0.0247497488035604!GO:0031326;regulation of cellular biosynthetic process;0.0248454085447912!GO:0004680;casein kinase activity;0.0251370061609233!GO:0032956;regulation of actin cytoskeleton organization and biogenesis;0.0253741007289686!GO:0008286;insulin receptor signaling pathway;0.0253957518299385!GO:0004843;ubiquitin-specific protease activity;0.0253957518299385!GO:0030308;negative regulation of cell growth;0.0255574387713388!GO:0006897;endocytosis;0.0260151649330094!GO:0010324;membrane invagination;0.0260151649330094!GO:0030032;lamellipodium biogenesis;0.0260495268162078!GO:0050178;phenylpyruvate tautomerase activity;0.026739454654526!GO:0045185;maintenance of protein localization;0.0271851149892994!GO:0040008;regulation of growth;0.0272758296707207!GO:0030145;manganese ion binding;0.0274239919940557!GO:0043241;protein complex disassembly;0.0277261055632007!GO:0045449;regulation of transcription;0.0277878694218455!GO:0006506;GPI anchor biosynthetic process;0.0277971141964024!GO:0000209;protein polyubiquitination;0.0287771255590404!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0289411281256579!GO:0005869;dynactin complex;0.0299818205013632!GO:0007030;Golgi organization and biogenesis;0.0301855903624677!GO:0050790;regulation of catalytic activity;0.0303687389415554!GO:0008601;protein phosphatase type 2A regulator activity;0.0306075236063562!GO:0051059;NF-kappaB binding;0.0306200626262657!GO:0016126;sterol biosynthetic process;0.0313273025155609!GO:0003746;translation elongation factor activity;0.0313273025155609!GO:0005637;nuclear inner membrane;0.0313408818981593!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0316052047894301!GO:0003682;chromatin binding;0.0317267233742736!GO:0006376;mRNA splice site selection;0.0320869999221728!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0320869999221728!GO:0006470;protein amino acid dephosphorylation;0.0320869999221728!GO:0008426;protein kinase C inhibitor activity;0.0322899605597204!GO:0043492;ATPase activity, coupled to movement of substances;0.0326046632516758!GO:0051348;negative regulation of transferase activity;0.0326046632516758!GO:0016301;kinase activity;0.0334396040588233!GO:0042158;lipoprotein biosynthetic process;0.0335555922271647!GO:0006505;GPI anchor metabolic process;0.0338911138045508!GO:0004850;uridine phosphorylase activity;0.0338911138045508!GO:0005669;transcription factor TFIID complex;0.0344584650852178!GO:0032594;protein transport within lipid bilayer;0.0345888304331602!GO:0032907;transforming growth factor-beta3 production;0.0345888304331602!GO:0032596;protein transport into lipid raft;0.0345888304331602!GO:0032910;regulation of transforming growth factor-beta3 production;0.0345888304331602!GO:0032595;B cell receptor transport within lipid bilayer;0.0345888304331602!GO:0033606;chemokine receptor transport within lipid bilayer;0.0345888304331602!GO:0032600;chemokine receptor transport out of lipid raft;0.0345888304331602!GO:0032599;protein transport out of lipid raft;0.0345888304331602!GO:0032597;B cell receptor transport into lipid raft;0.0345888304331602!GO:0032913;negative regulation of transforming growth factor-beta3 production;0.0345888304331602!GO:0003779;actin binding;0.0354859548112811!GO:0050662;coenzyme binding;0.0358449424377406!GO:0006607;NLS-bearing substrate import into nucleus;0.0358742516010358!GO:0006338;chromatin remodeling;0.0365464879252829!GO:0009889;regulation of biosynthetic process;0.0368788468157637!GO:0030968;unfolded protein response;0.0383167245942522!GO:0001666;response to hypoxia;0.0401528558123367!GO:0031301;integral to organelle membrane;0.0401528558123367!GO:0007004;telomere maintenance via telomerase;0.0404019009050925!GO:0008652;amino acid biosynthetic process;0.0407543461867378!GO:0007041;lysosomal transport;0.0407705101595997!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.0411707322230067!GO:0044452;nucleolar part;0.0414288337279096!GO:0022406;membrane docking;0.0418544693882273!GO:0048278;vesicle docking;0.0418544693882273!GO:0005765;lysosomal membrane;0.0418544693882273!GO:0030911;TPR domain binding;0.0419283943089238!GO:0044437;vacuolar part;0.0420831199907611!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0420831199907611!GO:0006458;'de novo' protein folding;0.0425994154011786!GO:0051084;'de novo' posttranslational protein folding;0.0425994154011786!GO:0007040;lysosome organization and biogenesis;0.0425994154011786!GO:0007266;Rho protein signal transduction;0.0425999280789594!GO:0046483;heterocycle metabolic process;0.0439088396024074!GO:0030128;clathrin coat of endocytic vesicle;0.0439956351579402!GO:0030669;clathrin-coated endocytic vesicle membrane;0.0439956351579402!GO:0030122;AP-2 adaptor complex;0.0439956351579402!GO:0031418;L-ascorbic acid binding;0.0441721896763177!GO:0004860;protein kinase inhibitor activity;0.0441721896763177!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0443467674377451!GO:0022890;inorganic cation transmembrane transporter activity;0.0445050515932581!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0445375168260003!GO:0032981;mitochondrial respiratory chain complex I assembly;0.044928409182668!GO:0010257;NADH dehydrogenase complex assembly;0.044928409182668!GO:0033108;mitochondrial respiratory chain complex assembly;0.044928409182668!GO:0005832;chaperonin-containing T-complex;0.0450481816232904!GO:0001836;release of cytochrome c from mitochondria;0.0451453956338111!GO:0001889;liver development;0.0459096678719491!GO:0030984;kininogen binding;0.0463483880678451!GO:0004213;cathepsin B activity;0.0463483880678451!GO:0007032;endosome organization and biogenesis;0.0463574989865942!GO:0004221;ubiquitin thiolesterase activity;0.0463763367271831!GO:0005784;translocon complex;0.046849932889162!GO:0009165;nucleotide biosynthetic process;0.0476594860181325!GO:0040029;regulation of gene expression, epigenetic;0.0480528027634638!GO:0044262;cellular carbohydrate metabolic process;0.0489120035675842!GO:0046519;sphingoid metabolic process;0.0489236832343554!GO:0000118;histone deacetylase complex;0.0491899230018144!GO:0006518;peptide metabolic process;0.049359103079987!GO:0045947;negative regulation of translational initiation;0.0493657404448281!GO:0017134;fibroblast growth factor binding;0.0497269725694376!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0497980697543572
|sample_id=11406
|sample_note=
|sample_sex=male
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=lung
|top_motifs=PPARG:2.41424787946;TP53:2.1869692889;ZEB1:2.18502661034;HIF1A:2.09544556937;TBX4,5:1.81557012404;SNAI1..3:1.64137202299;ONECUT1,2:1.55917921485;VSX1,2:1.40436933667;TEF:1.33431871488;T:1.1962614171;NKX2-1,4:1.18902124521;MYOD1:1.17586347935;TFCP2:1.15354508302;XCPE1{core}:1.11526831104;SP1:1.09883508631;ZNF148:0.98024395738;TFAP2{A,C}:0.931881864147;LMO2:0.89763181822;bHLH_family:0.844107215346;TFAP2B:0.811751182215;ADNP_IRX_SIX_ZHX:0.770104725017;TEAD1:0.742719944082;IKZF1:0.728873859268;HLF:0.719398114841;FOXQ1:0.71100162184;CRX:0.696779902788;POU6F1:0.621160849658;EGR1..3:0.616914508316;FOXM1:0.550155975566;UFEwm:0.543829442985;PAX1,9:0.530164526214;ZNF423:0.526945950026;MAZ:0.497017593265;CEBPA,B_DDIT3:0.496429660279;AIRE:0.447446845272;MTF1:0.401589416569;TBP:0.384079207381;STAT5{A,B}:0.379556585202;HOX{A4,D4}:0.370593422964;FOS_FOS{B,L1}_JUN{B,D}:0.368530437468;HMX1:0.364021571489;GLI1..3:0.363045856094;ELK1,4_GABP{A,B1}:0.351954254588;SOX17:0.333517878845;ARID5B:0.326001313586;FOX{F1,F2,J1}:0.321977120416;TLX2:0.300808749103;MED-1{core}:0.299464876448;FOSL2:0.296854984169;ZFP161:0.291016250477;NKX2-3_NKX2-5:0.287112812613;ATF4:0.284331158196;SPZ1:0.252109261893;GTF2A1,2:0.241193851487;ZIC1..3:0.221047233106;NR6A1:0.217725137082;CDC5L:0.209483606114;HIC1:0.203415565395;FOXL1:0.201444465698;HAND1,2:0.200142064216;TFDP1:0.193622853263;EVI1:0.193125183639;PAX4:0.187603784273;NR5A1,2:0.174046236178;BACH2:0.16429583936;ESR1:0.155833436792;MTE{core}:0.152104539544;FOXN1:0.131700257079;NFIL3:0.128684321882;NKX2-2,8:0.100993394892;PAX5:0.0886315439466;ZBTB6:0.083713090228;POU2F1..3:0.0830613670768;KLF4:0.0717802414778;FOXO1,3,4:0.0711603169891;PAX2:0.0555564423313;TOPORS:-0.00185226233612;AR:-0.0132751932347;REST:-0.0179422590096;MAFB:-0.0349981381939;GFI1B:-0.0410653463833;HMGA1,2:-0.0634319549041;RXRA_VDR{dimer}:-0.0668826343241;MYBL2:-0.0856553812102;PATZ1:-0.0862529756017;ZBTB16:-0.096272470944;PDX1:-0.102607569578;RREB1:-0.120526516469;NKX3-2:-0.12141233356;NFE2:-0.124308779809;PAX6:-0.128210712086;ATF5_CREB3:-0.131806772477;POU3F1..4:-0.155248158681;GTF2I:-0.173042722454;ATF6:-0.177013917583;GZF1:-0.1832095918;NHLH1,2:-0.184962311681;ZNF143:-0.195825031117;RORA:-0.197099271575;POU1F1:-0.206624644284;CREB1:-0.208964430645;EBF1:-0.211059626169;HOX{A6,A7,B6,B7}:-0.211747372888;NFKB1_REL_RELA:-0.228424816735;LHX3,4:-0.232393290591;IRF7:-0.2381723728;RXR{A,B,G}:-0.240471767832;HNF1A:-0.254984056049;EP300:-0.255078650275;NKX3-1:-0.262240032781;RBPJ:-0.286404091221;GATA6:-0.288667631474;TLX1..3_NFIC{dimer}:-0.295253967172;TFAP4:-0.297162974222;AHR_ARNT_ARNT2:-0.304684335979;HSF1,2:-0.307955149825;SOX2:-0.311828540708;HNF4A_NR2F1,2:-0.316571286319;BREu{core}:-0.320071044334;STAT2,4,6:-0.339443229527;ZNF238:-0.346177114102;ATF2:-0.347270766938;NKX6-1,2:-0.34894041993;EN1,2:-0.385468625365;SPI1:-0.385959564435;MYFfamily:-0.395588967948;NRF1:-0.404907560205;CDX1,2,4:-0.406065444283;POU5F1:-0.4089021636;FOX{D1,D2}:-0.409250462293;STAT1,3:-0.410314382571;PAX8:-0.412863278512;FOXA2:-0.414585284032;SREBF1,2:-0.42806248098;SMAD1..7,9:-0.432287792999;FOXP3:-0.442966836417;JUN:-0.476093918848;CUX2:-0.479288584073;LEF1_TCF7_TCF7L1,2:-0.486737924056;ALX1:-0.490827438324;NANOG:-0.51740623577;HOX{A5,B5}:-0.523430349495;OCT4_SOX2{dimer}:-0.527313337663;ETS1,2:-0.540313410086;NFE2L2:-0.541164397669;ALX4:-0.543095390994;MZF1:-0.571962101257;FOXD3:-0.578152213385;ELF1,2,4:-0.584130249988;PRRX1,2:-0.600635121416;BPTF:-0.601947002645;PITX1..3:-0.627971987044;RUNX1..3:-0.655516543624;SPIB:-0.655731803045;RFX2..5_RFXANK_RFXAP:-0.679443230225;NFIX:-0.687435855775;ZNF384:-0.690820751548;PRDM1:-0.70077861587;MYB:-0.718102021827;HBP1_HMGB_SSRP1_UBTF:-0.740792261797;MEF2{A,B,C,D}:-0.757272475842;RFX1:-0.798265828209;IKZF2:-0.817339556939;FOX{I1,J2}:-0.844388262104;NFY{A,B,C}:-0.853449071817;NR1H4:-0.860532022688;NFATC1..3:-0.864092002036;SRF:-0.891306140689;NR3C1:-0.893220971897;PAX3,7:-0.928929801375;FOXP1:-0.933192652371;SOX{8,9,10}:-0.95714717158;DMAP1_NCOR{1,2}_SMARC:-0.96226037475;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.962944407044;IRF1,2:-0.967084523695;DBP:-0.985454885948;YY1:-1.03921006775;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.04197742845;HOXA9_MEIS1:-1.04867649954;GFI1:-1.04954545094;NFE2L1:-1.06059001954;TAL1_TCF{3,4,12}:-1.06823352994;E2F1..5:-1.08334263971;NANOG{mouse}:-1.13438621019;XBP1:-1.13485397524;GATA4:-1.13532155959;SOX5:-1.17795677366;TGIF1:-1.1934065862;PBX1:-1.26565026024;ESRRA:-1.30175628399;GCM1,2:-1.36902756071;HES1:-1.46862696718
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11406-118E2;search_select_hide=table117:FF:11406-118E2
}}
}}

Latest revision as of 17:58, 4 June 2020

Name:Small Airway Epithelial Cells, donor3
Species:Human (Homo sapiens)
Library ID:CNhs12016
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuelung
dev stage50 years old adult
sexmale
age50
cell typepneumocyte
cell lineNA
companyLonza
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberN/A
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005139
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12016 CAGE DRX008466 DRR009338
Accession ID Hg19

Library idBAMCTSS
CNhs12016 DRZ000763 DRZ002148
Accession ID Hg38

Library idBAMCTSS
CNhs12016 DRZ012113 DRZ013498
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005139
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10014.GGTAGC sRNA-Seq DRX037246 DRR041612
Accession ID Hg19

Library idBAMCTSS
SRhi10014.GGTAGC DRZ007254


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.131
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.424
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.08
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.08
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD196.625303e-4
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.165
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0.0418
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.247
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0.325
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.333
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal1.076
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.354
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.0418
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0.48
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.00231
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.533
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.08
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.148
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.148
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0.0418
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.435
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12016

Jaspar motifP-value
MA0002.20.00421
MA0003.10.831
MA0004.10.542
MA0006.10.043
MA0007.10.641
MA0009.10.209
MA0014.10.309
MA0017.10.183
MA0018.20.0725
MA0019.10.655
MA0024.14.23555e-5
MA0025.10.231
MA0027.10.679
MA0028.10.896
MA0029.10.145
MA0030.10.283
MA0031.10.77
MA0035.20.564
MA0038.10.0099
MA0039.20.0382
MA0040.10.516
MA0041.10.34
MA0042.10.835
MA0043.10.225
MA0046.10.829
MA0047.20.00275
MA0048.10.91
MA0050.11.87679e-8
MA0051.12.52678e-6
MA0052.10.00991
MA0055.10.219
MA0057.10.256
MA0058.10.172
MA0059.10.199
MA0060.14.28042e-5
MA0061.10.00426
MA0062.20.233
MA0065.20.306
MA0066.10.474
MA0067.10.215
MA0068.10.0556
MA0069.10.115
MA0070.10.927
MA0071.10.144
MA0072.10.416
MA0073.10.976
MA0074.10.728
MA0076.10.787
MA0077.10.377
MA0078.10.512
MA0079.20.0762
MA0080.26.2692e-10
MA0081.10.00237
MA0083.10.164
MA0084.10.278
MA0087.10.824
MA0088.10.0447
MA0090.10.0303
MA0091.10.0464
MA0092.10.0331
MA0093.10.473
MA0099.20.291
MA0100.10.0266
MA0101.10.0637
MA0102.20.0847
MA0103.11.74785e-8
MA0104.20.0826
MA0105.17.20503e-5
MA0106.13.18043e-8
MA0107.10.0329
MA0108.20.865
MA0111.10.316
MA0112.20.0655
MA0113.10.981
MA0114.10.209
MA0115.10.641
MA0116.10.00217
MA0117.10.556
MA0119.10.4
MA0122.10.373
MA0124.10.52
MA0125.10.178
MA0131.10.705
MA0135.10.268
MA0136.11.89665e-7
MA0137.20.0404
MA0138.20.52
MA0139.10.544
MA0140.10.669
MA0141.10.514
MA0142.10.13
MA0143.10.52
MA0144.10.67
MA0145.10.16
MA0146.10.429
MA0147.10.0546
MA0148.10.00507
MA0149.10.502
MA0150.10.366
MA0152.10.452
MA0153.10.45
MA0154.10.00704
MA0155.10.298
MA0156.12.50568e-4
MA0157.10.298
MA0159.10.966
MA0160.10.539
MA0162.10.718
MA0163.16.20361e-5
MA0164.10.812
MA0258.10.058
MA0259.10.94



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12016

Novel motifP-value
10.38
100.0325
1000.168
1010.0789
1020.403
1030.375
1040.778
1050.619
1060.201
1070.234
1080.15
1090.372
110.426
1100.462
1110.562
1120.89
1130.661
1140.977
1150.111
1160.48
1170.539
1180.321
1190.93
120.632
1200.139
1210.323
1220.255
1230.179
1240.00303
1250.969
1260.815
1270.346
1280.882
1290.999
130.88
1300.0618
1310.812
1320.237
1330.00198
1340.0936
1350.553
1360.0034
1370.0246
1380.934
1390.186
140.877
1400.183
1410.324
1420.392
1430.11
1440.133
1450.325
1460.1
1470.267
1480.0377
1490.442
150.391
1500.537
1510.732
1520.00737
1530.378
1540.838
1550.426
1560.821
1570.762
1580.496
1590.71
160.523
1600.0664
1610.29
1620.502
1630.941
1640.372
1650.87
1660.392
1670.372
1680.65
1690.972
170.985
180.463
190.349
20.69
200.466
210.848
220.996
230.293
240.483
250.356
260.611
270.532
280.862
290.997
30.335
300.208
310.783
320.176
330.9
340.237
350.00322
360.0105
370.907
380.92
390.702
40.787
400.585
410.071
420.319
430.499
440.712
450.397
460.458
470.405
480.731
490.0338
50.396
500.74
510.616
520.175
530.029
540.803
550.579
560.868
570.945
580.442
590.895
60.0786
600.341
610.739
620.181
630.707
640.594
650.867
660.754
670.893
680.308
690.344
70.672
700.0301
710.078
720.808
730.0218
740.00499
750.539
760.788
770.68
780.325
790.916
80.477
800.0997
810.0614
820.367
830.211
840.475
850.383
860.756
870.0339
880.54
890.388
90.224
900.15
910.477
920.847
930.71
940.202
950.367
960.0488
970.816
980.125
990.695



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12016


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0002076 (endo-epithelial cell)
0002368 (respiratory epithelial cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0004119 (endoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010317 (germ layer / neural crest derived structure)
0000065 (respiratory tract)
0001004 (respiratory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000166 (human small airway epithelial cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000223 (endodermal cell)

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