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{{f5samples
{{f5samples
|id=FF:11425-118G3
|DRA_sample_Accession=CAGE@SAMD00004715
|name=Osteoblast - differentiated, donor3
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004715
|sample_id=11425
|accession_numbers=CAGE;DRX008391;DRR009263;DRZ000688;DRZ002073;DRZ012038;DRZ013423
|rna_tube_id=118G3
|accession_numbers_RNASeq=sRNA-Seq;DRX037252;DRR041618;DRZ007260
|rna_box=118
|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
|rna_position=G3
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000055,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000062
|sample_cell_lot=N/A
|sample_cell_catalog=N/A
|sample_company=Cell Applications
|rna_lot_number=1266
|rna_catalog_number=CA406D-R10f
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=18 weeks old fetus
|sample_tissue=bone
|sample_donor(cell lot)=
|sample_sex=male
|sample_age=embryo 18 week
|sample_ethnicity=C
|rna_rin=
|rna_od260/230=
|rna_od260/280=
|sample_cell_type=osteocyte
|sample_cell_line=
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_weight_ug=10
|rna_concentration=1
|sample_note=
|profile_hcage=CNhs12035,LSID837,release011,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=SRhi10015,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000035,CL:0000048,CL:0000055,CL:0000062,CL:0000063,CL:0000134,CL:0000144,CL:0000219,CL:0000255,CL:0000335,CL:0000375,CL:0000548,CL:0000723,CL:0002320,CL:0002371
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000465,UBERON:0000479,UBERON:0001062,UBERON:0002384
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000127,FF:0000128
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chr19:46801639..46801699,+!p1@HIF3A!2.02!104.51!HIF3A;;chr1:170632285..170632309,+!p1@PRRX1!1.73!60.01!PRRX1;;chr9:132427972..132428056,+!p1@PRRX2!1.56!45.53!PRRX2;;chrX:106960285..106960299,-!p1@TSC22D3!1.52!824.68!TSC22D3;;chr15:42749722..42749739,-!p2@ZFP106!1.51!54.84!ZFP106;;chrX:106960180..106960197,-!p2@TSC22D3!1.46!103.47!TSC22D3;;chr5:153857778..153857794,-!p1@HAND1!1.41!24.83!HAND1;;chr7:19157248..19157268,-!p1@TWIST1!1.39!64.15!TWIST1;;chr19:13134772..13134822,+!p2@NFIX!1.39!34.15!NFIX;;chr10:28034739..28034756,-!p1@MKX!1.38!22.76!MKX;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.38!22.76!HOXC5;;chr1:170633348..170633399,+!p2@PRRX1!1.35!28.97!PRRX1;;chr9:132427883..132427951,+!p2@PRRX2!1.32!19.66!PRRX2;;chr7:96654133..96654150,-!p1@DLX5!1.29!18.63!DLX5;;chr7:27192185..27192209,-!p1@HOXA3!1.24!16.56!HOXA3;;chr2:5832508..5832524,+!p1@SOX11!1.24!16.56!SOX11;;chr2:239756671..239756732,+!p1@TWIST2!1.23!50.70!TWIST2;;chrX:106960221..106960236,-!p3@TSC22D3!1.23!43.46!TSC22D3;;chr5:134369879..134369898,-!p2@PITX1!1.22!15.52!PITX1;;chr5:134369905..134369972,-!p1@PITX1!1.20!22.76!PITX1;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!1.19!143.83!GLIS2;;chr19:36134528..36134563,+!p1@ETV2!1.19!41.39!ETV2;;chr1:170633262..170633285,+!p3@PRRX1!1.19!16.56!PRRX1;;chr14:61116183..61116208,-!p1@SIX1!1.18!53.81!SIX1;;chr3:126076242..126076257,-!p1@KLF15!1.18!17.59!KLF15;;chr11:46299199..46299233,+!p1@CREB3L1!1.17!71.40!CREB3L1;;chr7:19157043..19157088,-!p2@TWIST1!1.14!32.08!TWIST1;;chr5:172662197..172662216,-!p1@NKX2-5!1.13!12.42!NKX2-5;;chr7:27205136..27205164,-!p1@HOXA9!1.13!12.42!HOXA9;;chr7:27224795..27224840,-!p2@HOXA11!1.13!12.42!HOXA11;;chr16:86600870..86600921,+!p2@FOXC2!1.05!10.35!FOXC2;;chr2:176994408..176994492,+!p1@HOXD8!1.05!10.35!HOXD8;;chrX:106960249..106960260,-!p5@TSC22D3!1.03!15.52!TSC22D3;;chr2:145282041..145282092,-!p8@ZEB2!1.02!14.49!ZEB2;;chr3:126076264..126076305,-!p2@KLF15!1.02!13.45!KLF15;;chr5:72744445..72744466,-!p2@FOXD1!1.01!15.52!FOXD1;;chr7:27224842..27224872,-!p1@HOXA11!1.01!9.31!HOXA11;;chr1:119530493..119530572,-!p1@TBX15!1.01!9.31!TBX15;;chr12:66218255..66218304,+!p3@HMGA2!0.99!23.80!HMGA2;;chr6:85474299..85474324,-!p1@TBX18!0.98!15.52!TBX18;;chr5:72744594..72744609,-!p1@FOXD1!0.97!39.32!FOXD1;;chr11:46299539..46299620,+!p2@CREB3L1!0.97!14.49!CREB3L1;;chr1:170632959..170632987,+!p4@PRRX1!0.97!9.31!PRRX1;;chr11:113930401..113930422,+!p3@ZBTB16!0.97!8.28!ZBTB16;;chr12:54393880..54393962,+!p1@HOXC9!0.97!8.28!HOXC9;;chr14:29235961..29236008,+!p1@FOXG1!0.97!8.28!FOXG1;;chr16:86600426..86600441,+!p1@FOXC2!0.96!20.69!FOXC2;;chr11:45202580..45202606,+!p@chr11:45202580..45202606,+!0.96!10.35!PRDM11;;chr7:44143997..44144008,+!p3@AEBP1!0.96!10.35!AEBP1;;chr8:72756667..72756736,-!p2@MSC!0.94!12.42!MSC;;chr12:57914286..57914304,-!p1@DDIT3!0.93!281.45!DDIT3;;chr11:46299443..46299459,+!p4@CREB3L1!0.92!7.24!CREB3L1;;chr12:66218904..66218913,+!p11@HMGA2!0.92!7.24!HMGA2;;chr19:46800289..46800327,+!p2@HIF3A!0.92!7.24!HIF3A;;chr8:25902876..25902936,-!p1@EBF2!0.92!7.24!EBF2;;chr15:57511609..57511651,+!p2@TCF12!0.91!12.42!TCF12;;chr11:113930425..113930471,+!p1@ZBTB16!0.91!10.35!ZBTB16;;chr11:47279248..47279264,+!p3@NR1H3!0.91!8.28!NR1H3;;chr6:34204921..34204939,+!p3@HMGA1!0.90!220.40!HMGA1;;chr3:12329358..12329393,+!p3@PPARG!0.90!17.59!PPARG;;chr9:110250697..110250738,-!p2@KLF4!0.90!8.28!KLF4;;chr3:12329397..12329433,+!p2@PPARG!0.88!15.52!PPARG;;chr11:47279504..47279563,+!p1@NR1H3!0.88!15.52!NR1H3;;chr18:22932080..22932170,-!p1@ZNF521!0.87!28.97!ZNF521;;chr2:239756739..239756755,+!p2@TWIST2!0.87!11.38!TWIST2;;chrX:107019163..107019179,-!p7@TSC22D3!0.86!7.24!TSC22D3;;chrX:107019181..107019193,-!p10@TSC22D3!0.86!6.21!TSC22D3;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!0.86!6.21!POU3F3;;chr2:85981107..85981120,+!p3@ATOH8!0.86!6.21!ATOH8;;chr4:174451370..174451387,-!p1@HAND2!0.86!6.21!HAND2;;chr10:28035133..28035148,-!p3@MKX!0.86!6.21!MKX;;chr12:10870927..10870966,-!p5@CSDA!0.86!6.21!CSDA;;chr19:13135582..13135600,+!p3@NFIX!0.86!6.21!NFIX;;chr1:244214577..244214593,+!p1@ZNF238!0.86!6.21!ZNF238;;chr17:17726907..17726958,-!p2@SREBF1!0.85!40.35!SREBF1;;chr17:59477233..59477263,+!p1@TBX2!0.85!19.66!TBX2;;chr8:48650715..48650735,-!p1@CEBPD!0.84!798.81!CEBPD;;chr16:4366021..4366045,+!p@chr16:4366021..4366045,+!0.84!30.01!GLIS2;;chr7:44143925..44143970,+!p1@AEBP1!0.83!138.65!AEBP1;;chr16:29817841..29817865,+!p1@MAZ!0.83!132.45!MAZ;;chr8:49833978..49833996,-!p1@SNAI2!0.83!128.31!SNAI2;;chr9:110252035..110252057,-!p1@KLF4!0.83!99.33!KLF4;;chr2:19558373..19558392,-!p1@OSR1!0.83!16.56!OSR1;;chr7:113726357..113726443,+!p1@FOXP2!0.83!10.35!FOXP2;;chr19:56111680..56111716,+!p1@ZNF524!0.82!22.76!ZNF524;;chr19:18391615..18391637,-!p5@JUND!0.81!7.24!JUND;;chr6:1610293..1610310,+!p1@FOXC1!0.80!9.31!FOXC1;;chr19:56154958..56155027,+!p1@ZNF581!0.79!184.18!ZNF581;;chr1:221053049..221053075,+!p3@HLX!0.79!9.31!HLX;;chr1:119530706..119530736,-!p3@TBX15!0.79!5.17!TBX15;;chr7:27213893..27213954,-!p1@HOXA10!0.79!5.17!HOXA10;;chr7:96654026..96654061,-!p2@DLX5!0.79!5.17!DLX5;;chr3:147127142..147127168,+!p1@ZIC1!0.79!5.17!ZIC1;;chr4:174450089..174450153,-!p2@HAND2!0.79!5.17!HAND2;;chrY:21906594..21906622,-!p1@KDM5D!0.79!5.17!KDM5D;;chr10:131762504..131762555,-!p1@EBF3!0.79!5.17!EBF3;;chr12:54378923..54378966,+!p1@HOXC10!0.79!5.17!HOXC10;;chr12:54379029..54379057,+!p2@HOXC10!0.79!5.17!HOXC10;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.79!5.17!HOXC5;;chr17:7492684..7492778,-!p2@SOX15!0.78!11.38!SOX15;;chr8:49833948..49833973,-!p2@SNAI2!0.77!34.15!SNAI2;;chr19:58987786..58987805,+!p3@ZNF446!0.77!7.24!ZNF446;;chr8:72756023..72756055,-!p6@MSC!0.77!6.21!MSC;;chr12:10875658..10875708,-!p2@CSDA!0.75!11.38!CSDA;;chr8:72756213..72756243,-!p5@MSC!0.75!6.21!MSC;;chr5:92918956..92918969,+!p4@NR2F1!0.75!5.17!NR2F1;;chr7:14028488..14028516,-!p2@ETV1!0.75!5.17!ETV1;;chr14:24837368..24837401,+!p1@NFATC4!0.74!11.38!NFATC4;;chr17:59477275..59477286,+!p3@TBX2!0.74!6.21!TBX2;;chr6:32095523..32095564,-!p2@ATF6B!0.73!6.21!ATF6B;;chr8:128747757..128747800,+!p7@MYC!0.73!6.21!MYC;;chrX:107018969..107019024,-!p6@TSC22D3!0.73!6.21!TSC22D3;;chr6:45296048..45296082,+!p1@RUNX2!0.73!5.17!RUNX2;;chr14:75894714..75894733,+!p1@JDP2!0.72!136.58!JDP2;;chr19:13106214..13106382,+!p1@NFIX!0.72!110.72!NFIX;;chr13:74708029..74708077,-!p2@KLF12!0.72!13.45!KLF12;;chr1:221052840..221052875,+!p4@HLX!0.72!5.17!HLX;;chr12:66218836..66218888,+!p1@HMGA2!0.71!43.46!HMGA2;;chr11:113930291..113930339,+!p2@ZBTB16!0.71!7.24!ZBTB16;;chr2:85981222..85981259,+!p2@ATOH8!0.71!7.24!ATOH8;;chr12:10875612..10875631,-!p9@CSDA!0.71!5.17!CSDA;;chr10:114710430..114710470,+!p30@TCF7L2!0.71!4.14!TCF7L2;;chr11:46333934..46333963,+!p5@CREB3L1!0.71!4.14!CREB3L1;;chr14:33403881..33403924,+!p1@NPAS3!0.71!4.14!NPAS3;;chr2:162272785..162272836,+!p1@TBR1!0.71!4.14!TBR1;;chr2:45236540..45236577,-!p1@SIX2!0.71!4.14!SIX2;;chr3:42695180..42695201,+!p2@ZBTB47!0.71!4.14!ZBTB47;;chr17:46682321..46682362,-!p1@HOXB6!0.71!4.14!HOXB6;;chr1:2985760..2985774,+!p1@PRDM16!0.71!4.14!PRDM16;;chr6:134210243..134210257,+!p1@TCF21!0.71!4.14!TCF21;;chr7:15726243..15726293,-!p2@MEOX2!0.71!4.14!MEOX2;;chr7:15726296..15726315,-!p1@MEOX2!0.71!4.14!MEOX2;;chr7:27196217..27196246,-!p2@HOXA7!0.71!4.14!HOXA7;;chr7:27205106..27205134,-!p2@HOXA9!0.71!4.14!HOXA9;;chr7:73038839..73038862,-!p1@MLXIPL!0.71!4.14!MLXIPL;;chr8:11561684..11561751,+!p1@GATA4!0.71!4.14!GATA4;;chrX:25034067..25034088,-!p1@ARX!0.71!4.14!ARX;;chr19:7580944..7581031,+!p1@ZNF358!0.70!136.58!ZNF358;;chr9:73029219..73029289,-!p2@KLF9!0.70!13.45!KLF9;;chr15:96874927..96874938,+!p8@NR2F2!0.70!9.31!NR2F2;;chr10:77161133..77161176,-!p3@ZNF503!0.70!9.31!ZNF503;;chr11:61520075..61520136,+!p1@C11orf9!0.70!9.31!C11orf9;;chr1:26496382..26496457,+!p1@ZNF593!0.69!270.06!ZNF593;;chr19:18392236..18392248,-!p2@JUND!0.69!28.97!JUND;;chr16:30583017..30583064,-!p1@ZNF688!0.69!22.76!ZNF688;;chr5:92918919..92918942,+!p1@NR2F1!0.69!19.66!NR2F1;;chr12:53625966..53626012,-!p2@RARG!0.69!11.38!RARG;;chr13:73633131..73633149,+!p1@KLF5!0.68!46.56!KLF5;;chr19:56111614..56111634,+!p3@ZNF524!0.68!6.21!ZNF524;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.68!4.14!GLIS1;;chr19:46271505..46271575,-!p2@SIX5!0.67!10.35!SIX5;;chr8:116680215..116680245,-!p6@TRPS1!0.67!6.21!TRPS1;;chr19:9879350..9879419,-!p2@ZNF846!0.66!8.28!ZNF846;;chr18:3449720..3449749,+!p2@TGIF1!0.66!8.28!TGIF1;;chr14:61116168..61116180,-!p2@SIX1!0.66!4.14!SIX1;;chr15:83953397..83953425,-!p1@BNC1!0.65!4.14!BNC1;;chr6:31515337..31515420,+!p1@NFKBIL1!0.64!72.43!NFKBIL1;;chr8:48650697..48650708,-!p2@CEBPD!0.64!30.01!CEBPD;;chr11:65687362..65687436,+!p3@DRAP1!0.64!17.59!DRAP1;;chr16:29816957..29817031,+!p7@MAZ!0.64!17.59!MAZ;;chr5:158526917..158526932,-!p1@EBF1!0.64!9.31!EBF1;;chr5:92919068..92919082,+!p5@NR2F1!0.64!4.14!NR2F1;;chr14:21566731..21566836,-!p1@ZNF219!0.63!41.39!ZNF219;;chr16:3185125..3185173,+!p1@ZNF213!0.63!9.31!ZNF213;;chr19:19303047..19303079,+!p3@RFXANK!0.63!8.28!RFXANK;;chr8:72756063..72756125,-!p1@MSC!0.63!7.24!MSC;;chr19:44037334..44037365,+!p2@ZNF575!0.63!5.17!ZNF575;;chr5:92919100..92919135,+!p3@NR2F1!0.63!4.14!NR2F1;;chr12:10875831..10876025,-!p1@CSDA!0.62!317.66!CSDA;;chr9:73028814..73028895,-!p1@KLF9!0.62!37.25!KLF9;;chr6:35310395..35310410,+!p2@PPARD!0.62!14.49!PPARD;;chr17:17723626..17723663,-!p4@SREBF1!0.62!7.24!SREBF1;;chr5:72744562..72744573,-!p3@FOXD1!0.62!4.14!FOXD1;;chr19:38720294..38720348,-!p1@DPF1!0.62!4.14!DPF1;;chr9:73028332..73028385,-!p3@KLF9!0.61!12.42!KLF9;;chr18:3449821..3449860,+!p7@TGIF1!0.61!6.21!TGIF1;;chr8:106330696..106330719,+!p2@ZFPM2!0.61!4.14!ZFPM2;;chr6:108977520..108977534,+!p7@FOXO3!0.61!3.10!FOXO3;;chr7:31380292..31380351,-!p1@NEUROD6!0.61!3.10!NEUROD6;;chr8:65492756..65492768,+!p2@BHLHE22!0.61!3.10!BHLHE22;;chr8:72755987..72756002,-!p7@MSC!0.61!3.10!MSC;;chr8:72756194..72756208,-!p9@MSC!0.61!3.10!MSC;;chr1:170632310..170632321,+!p15@PRRX1!0.61!3.10!PRRX1;;chr1:170633058..170633084,+!p5@PRRX1!0.61!3.10!PRRX1;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OXN3!0.35!13.45!FOXN3;;chr12:54772960..54773015,-!p3@ZNF385A!0.35!9.31!ZNF385A;;chr19:57751980..57752019,+!p2@ZNF805!0.35!6.21!ZNF805;;chr18:45457478..45457517,-!p6@SMAD2!0.35!5.17!SMAD2;;chr15:66994561..66994597,+!p2@SMAD6!0.35!4.14!SMAD6;;chr12:108154925..108154945,-!p2@PRDM4!0.35!4.14!PRDM4;;chr12:53853054..53853092,+!p6@PCBP2!0.35!3.10!PCBP2;;chr3:24536253..24536328,-!p1@THRB!0.35!3.10!THRB;;chr6:31869828..31869880,-!p1@ZBTB12!0.35!3.10!ZBTB12;;chr10:31320840..31320859,-!p4@ZNF438!0.35!2.07!ZNF438;;chr10:77161650..77161661,-!p4@ZNF503!0.35!2.07!ZNF503;;chr12:10854595..10854628,-!p7@CSDA!0.35!2.07!CSDA;;chr19:45261992..45262010,+!p9@BCL3!0.35!2.07!BCL3;;chr9:99180662..99180690,-!p2@ZNF367!0.35!2.07!ZNF367;;chr7:111846741..111846776,+!p1@ZNF277!0.34!40.35!ZNF277;;chr6:144329384..144329405,-!p1@PLAGL1!0.34!22.76!PLAGL1;;chr20:42543441..42543497,+!p1@TOX2!0.34!8.28!TOX2;;chr1:149871114..149871134,+!p3@BOLA1!0.34!7.24!BOLA1;;chr7:28448965..28448994,+!p2@CREB5!0.34!6.21!CREB5;;chr20:39946361..39946379,-!p2@ZHX3!0.34!5.17!ZHX3;;chr19:58892390..58892404,-!p1@ZNF837!0.34!3.10!ZNF837;;chr12:52430894..52430952,+!p3@NR4A1!0.34!3.10!NR4A1;;chr12:53774035..53774058,+!p4@SP1!0.34!3.10!SP1;;chr12:26277929..26277955,-!p3@BHLHE41!0.34!2.07!BHLHE41;;chr15:57210692..57210713,-!p5@ZNF280D!0.34!2.07!ZNF280D;;chr15:66994615..66994630,+!p3@SMAD6!0.34!2.07!SMAD6;;chr15:96869292..96869320,+!p15@NR2F2!0.34!2.07!NR2F2;;chr15:96876966..96877017,+!p12@NR2F2!0.34!2.07!NR2F2;;chr18:19749386..19749404,+!p2@GATA6!0.34!2.07!GATA6;;chr9:14313893..14313908,-!p7@NFIB!0.34!2.07!NFIB;;chr3:42947600..42947680,+!p1@ZNF662!0.34!2.07!ZNF662;;chr20:48807351..48807384,+!p1@CEBPB!0.33!198.67!CEBPB;;chr19:56152361..56152434,+!p1@ZNF580!0.33!51.74!ZNF580;;chr19:56632592..56632670,-!p1@ZNF787!0.33!43.46!ZNF787;;chr16:2059797..2059837,-!p1@ZNF598!0.33!7.24!ZNF598;;chr12:57504975..57505019,-!p2@STAT6!0.33!7.24!STAT6;;chr17:38498402..38498445,+!p3@RARA!0.33!6.21!RARA;;chr8:128749984..128750033,+!p4@MYC!0.33!6.21!MYC;;chr3:187463220..187463232,-!p3@BCL6!0.33!5.17!BCL6;;chr1:249132484..249132505,+!p4@ZNF672!0.33!5.17!ZNF672;;chr19:42759300..42759324,-!p2@ERF!0.33!4.14!ERF;;chr19:53662295..53662319,-!p1@ZNF347!0.33!4.14!ZNF347;;chr14:35872962..35873025,-!p3@NFKBIA!0.33!4.14!NFKBIA;;chr8:125985531..125985571,+!p1@ZNF572!0.33!3.10!ZNF572;;chr12:56401175..56401225,+!p3@IKZF4!0.33!2.07!IKZF4;;chr14:21566882..21566898,-!p3@ZNF219!0.33!2.07!ZNF219;;chr2:178128552..178128574,-!p7@NFE2L2!0.33!2.07!NFE2L2;;chr10:63809106..63809127,+!p1@ARID5B!0.32!24.83!ARID5B;;chr15:96874012..96874042,+!p2@NR2F2!0.32!16.56!NR2F2;;chr11:118992269..118992334,+!p1@HINFP!0.32!15.52!HINFP;;chr12:115121962..115121987,-!p1@TBX3!0.32!15.52!TBX3;;chr19:55987963..55987996,+!p1@ZNF628!0.32!13.45!ZNF628;;chr11:46722560..46722595,+!p1@ZNF408!0.32!9.31!ZNF408;;chr12:48298785..48298828,-!p1@VDR!0.32!9.31!VDR;;chr11:65686732..65686756,+!p2@DRAP1!0.32!7.24!DRAP1;;chr21:27107672..27107698,+!p2@GABPA!0.32!7.24!GABPA;;chr3:37217736..37217753,-!p2@LRRFIP2!0.32!7.24!LRRFIP2;;chr5:76383017..76383068,-!p1@ZBED3!0.32!6.21!ZBED3;;chr16:29817433..29817468,+!p8@MAZ!0.32!5.17!MAZ;;chr16:89787937..89787971,+!p1@ZNF276!0.32!4.14!ZNF276;;chr19:12203100..12203132,+!p1@ZNF788!0.32!3.10!ZNF788;;chr1:164528616..164528660,+!p5@PBX1!0.32!3.10!PBX1;;chr1:37940102..37940131,+!p2@ZC3H12A!0.32!3.10!ZC3H12A;;chr17:41622925..41622976,-!p3@ETV4!0.32!2.07!ETV4;;chr12:66218573..66218596,+!p7@HMGA2!0.32!2.07!HMGA2;;chr22:29196511..29196541,-!p1@XBP1!0.31!206.95!XBP1;;chr9:130953817..130953876,-!p1@CIZ1!0.31!112.79!CIZ1;;chr16:8962853..8962878,-!p1@CARHSP1!0.31!108.65!CARHSP1;;chr12:56753869..56753930,-!p1@STAT2!0.31!81.74!STAT2;;chr17:38474489..38474548,+!p1@RARA!0.31!58.98!RARA;;chr19:35759824..35759891,+!p1@USF2!0.31!56.91!USF2;;chr2:169312725..169312810,+!p1@CERS6!0.31!44.49!CERS6;;chr22:21356016..21356105,-!p1@THAP7!0.31!28.97!THAP7;;chr6:35464817..35464894,-!p1@TEAD3!0.31!27.94!TEAD3;;chr19:17356697..17356762,-!p1@NR2F6!0.31!24.83!NR2F6;;chr19:3359591..3359667,+!p2@NFIC!0.31!20.69!NFIC;;chr19:35168567..35168620,+!p1@ZNF302!0.31!20.69!ZNF302;;chr19:44100728..44100804,+!p1@SRRM5,p1@ZNF576!0.31!17.59!ZNF576;;chr3:44666519..44666542,+!p1@ZNF197!0.31!16.56!ZNF197;;chr5:172483347..172483407,+!p1@C5orf41!0.31!13.45!CREBRF;;chr18:45457423..45457468,-!p5@SMAD2!0.31!6.21!SMAD2;;chr17:1959369..1959388,+!p2@HIC1!0.31!4.14!HIC1;;chr6:41040923..41040952,+!p2@NFYA!0.31!4.14!NFYA;;chr2:42795651..42795676,+!p3@MTA3!0.31!4.14!MTA3;;chr21:36262032..36262062,-!p5@RUNX1!0.31!4.14!RUNX1;;chr12:48298765..48298783,-!p2@VDR!0.31!3.10!VDR;;chr5:150284532..150284549,-!p1@ZNF300!0.31!3.10!ZNF300;;chr19:44100548..44100581,+!p2@ZNF576!0.31!2.07!ZNF576;;chr1:8483723..8483752,-!p12@RERE!0.31!2.07!RERE;;chr17:41622765..41622821,-!p2@ETV4!0.31!2.07!ETV4;;chr18:3449695..3449712,+!p9@TGIF1!0.31!2.07!TGIF1;;chr10:35415735..35415756,+!p9@CREM!0.31!2.07!CREM;;chr22:29196492..29196503,-!p3@XBP1!0.31!2.07!XBP1;;chr3:33481687..33481713,-!p4@UBP1!0.31!2.07!UBP1;;chr2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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000062
|ffid_belonging_in_development=CL:0000134,CL:0000335
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 66: Line 43:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
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|comment=
|created_by=
|creation_date=
|def=
|has_quality=
|has_quality=
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|name=Osteoblast - differentiated, donor3
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|rna_box=118
|rna_catalog_number=CA406D-R10f
|rna_concentration=1
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_lot_number=1266
|rna_od260/230=
|rna_od260/280=
|rna_position=G3
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=118G3
|rna_weight_ug=10
|rnaseq_library_id=SRhi10015.CAGATC
|sample_age=embryo 18 week
|sample_category=primary cells
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_lot=N/A
|sample_cell_type=osteocyte
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=Cell Applications
|sample_description=
|sample_dev_stage=18 weeks old fetus
|sample_disease=
|sample_donor(cell lot)=
|sample_ethnicity=C
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.07784187321589e-207!GO:0005737;cytoplasm;2.04174517450248e-195!GO:0043226;organelle;6.21329490805415e-153!GO:0043229;intracellular organelle;1.06863527290057e-152!GO:0043231;intracellular membrane-bound organelle;1.31691711202194e-147!GO:0043227;membrane-bound organelle;2.78364559489019e-147!GO:0044444;cytoplasmic part;2.37330114384467e-146!GO:0044422;organelle part;5.79075809384221e-114!GO:0044446;intracellular organelle part;1.16357085795024e-112!GO:0005515;protein binding;1.28677604459666e-77!GO:0032991;macromolecular complex;4.56459504532805e-74!GO:0030529;ribonucleoprotein complex;2.13198188708558e-72!GO:0044237;cellular metabolic process;1.24474282236524e-69!GO:0044238;primary metabolic process;9.24888360280742e-69!GO:0005739;mitochondrion;4.50441166780196e-67!GO:0043170;macromolecule metabolic process;3.21667986216344e-59!GO:0043233;organelle lumen;9.22459370875993e-54!GO:0031974;membrane-enclosed lumen;9.22459370875993e-54!GO:0005840;ribosome;3.61740676904585e-52!GO:0031090;organelle membrane;3.69961036366931e-52!GO:0009058;biosynthetic process;5.80485087269912e-48!GO:0019538;protein metabolic process;5.8289154318374e-48!GO:0006412;translation;1.08995300660347e-47!GO:0003723;RNA binding;8.49809289883815e-47!GO:0003735;structural constituent of ribosome;1.77106532509154e-46!GO:0044428;nuclear part;2.10944251832211e-44!GO:0044260;cellular macromolecule metabolic process;6.4401322708595e-44!GO:0044249;cellular biosynthetic process;7.22325109897764e-43!GO:0044429;mitochondrial part;9.98575092532247e-43!GO:0044267;cellular protein metabolic process;3.658347212469e-42!GO:0033279;ribosomal subunit;8.93921795941518e-42!GO:0009059;macromolecule biosynthetic process;4.78887100304297e-41!GO:0016043;cellular component organization and biogenesis;1.06416223205399e-40!GO:0005634;nucleus;5.46573070246462e-39!GO:0005829;cytosol;3.8619331641098e-38!GO:0043234;protein complex;8.08940416966652e-36!GO:0015031;protein transport;3.04704757669606e-35!GO:0031967;organelle envelope;3.71672997900202e-35!GO:0031975;envelope;5.6866292708137e-35!GO:0033036;macromolecule localization;6.11713388218968e-34!GO:0045184;establishment of protein localization;3.45190176241423e-33!GO:0008104;protein localization;1.39012456329377e-32!GO:0006396;RNA processing;2.57792861595529e-31!GO:0005830;cytosolic ribosome (sensu Eukaryota);4.71954668684606e-31!GO:0005740;mitochondrial envelope;4.74188657218659e-29!GO:0031966;mitochondrial membrane;1.56674161194835e-27!GO:0046907;intracellular transport;3.63745683397528e-27!GO:0031981;nuclear lumen;4.04586487905397e-27!GO:0065003;macromolecular complex assembly;4.56869003754858e-26!GO:0019866;organelle inner membrane;6.26497671097461e-26!GO:0043283;biopolymer metabolic process;1.22752187297789e-25!GO:0016071;mRNA metabolic process;1.75985700420592e-25!GO:0010467;gene expression;3.24722734770887e-25!GO:0005743;mitochondrial inner membrane;8.52533650520284e-25!GO:0022607;cellular component assembly;1.64437713804656e-24!GO:0005783;endoplasmic reticulum;5.56164122521623e-24!GO:0006886;intracellular protein transport;6.14675009533504e-24!GO:0008380;RNA splicing;1.79342041567136e-23!GO:0006996;organelle organization and biogenesis;1.30796263045229e-22!GO:0044445;cytosolic part;1.95670494851196e-22!GO:0043228;non-membrane-bound organelle;2.89741407981393e-22!GO:0043232;intracellular non-membrane-bound organelle;2.89741407981393e-22!GO:0015934;large ribosomal subunit;1.36595769849679e-21!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.6831712757802e-21!GO:0006119;oxidative phosphorylation;2.01109540665694e-21!GO:0015935;small ribosomal subunit;2.76604463528303e-21!GO:0006397;mRNA processing;4.71993756731535e-21!GO:0044455;mitochondrial membrane part;1.06231268458972e-20!GO:0048770;pigment granule;1.15014856946116e-20!GO:0042470;melanosome;1.15014856946116e-20!GO:0012505;endomembrane system;1.29777189999121e-20!GO:0006457;protein folding;4.9121351729254e-20!GO:0044432;endoplasmic reticulum part;4.27930387275195e-19!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.99130383118054e-18!GO:0051186;cofactor metabolic process;4.78411560925239e-18!GO:0031980;mitochondrial lumen;3.33948989804926e-17!GO:0005759;mitochondrial matrix;3.33948989804926e-17!GO:0005746;mitochondrial respiratory chain;4.06488888942869e-17!GO:0008134;transcription factor binding;5.13861594542379e-17!GO:0051641;cellular localization;5.88357789436445e-17!GO:0051649;establishment of cellular localization;6.88183244220212e-17!GO:0005654;nucleoplasm;3.41108047916176e-16!GO:0005794;Golgi apparatus;5.48175342074327e-16!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);8.79316965183018e-16!GO:0005681;spliceosome;1.00284679037618e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.69973633967329e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;5.01055889745403e-15!GO:0043285;biopolymer catabolic process;7.70221136813994e-15!GO:0005761;mitochondrial ribosome;1.76339473089819e-14!GO:0000313;organellar ribosome;1.76339473089819e-14!GO:0050136;NADH dehydrogenase (quinone) activity;2.01475258045513e-14!GO:0003954;NADH dehydrogenase activity;2.01475258045513e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.01475258045513e-14!GO:0022618;protein-RNA complex assembly;2.19869955120054e-14!GO:0016874;ligase activity;2.91455120790639e-14!GO:0006732;coenzyme metabolic process;3.85822334505212e-14!GO:0044265;cellular macromolecule catabolic process;4.65243486688522e-14!GO:0044451;nucleoplasm part;7.2559725661321e-14!GO:0006512;ubiquitin cycle;1.19528448935273e-13!GO:0009057;macromolecule catabolic process;1.63842480095671e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.64511714212051e-13!GO:0006605;protein targeting;2.97097294591016e-13!GO:0051082;unfolded protein binding;3.12432849591465e-13!GO:0008135;translation factor activity, nucleic acid binding;3.80713955649418e-13!GO:0030163;protein catabolic process;3.92437691965701e-13!GO:0012501;programmed cell death;5.2702211745642e-13!GO:0044248;cellular catabolic process;5.70093158677473e-13!GO:0000502;proteasome complex (sensu Eukaryota);6.95435741076899e-13!GO:0042175;nuclear envelope-endoplasmic reticulum network;8.09557041819068e-13!GO:0051603;proteolysis involved in cellular protein catabolic process;8.19774313075403e-13!GO:0048523;negative regulation of cellular process;8.2822298318313e-13!GO:0030964;NADH dehydrogenase complex (quinone);1.27066032403716e-12!GO:0045271;respiratory chain complex I;1.27066032403716e-12!GO:0005747;mitochondrial respiratory chain complex I;1.27066032403716e-12!GO:0019941;modification-dependent protein catabolic process;1.38416697250545e-12!GO:0043632;modification-dependent macromolecule catabolic process;1.38416697250545e-12!GO:0005789;endoplasmic reticulum membrane;1.47569454634446e-12!GO:0042775;organelle ATP synthesis coupled electron transport;1.49923976872821e-12!GO:0042773;ATP synthesis coupled electron transport;1.49923976872821e-12!GO:0006915;apoptosis;1.5633153718481e-12!GO:0044257;cellular protein catabolic process;1.60389109789714e-12!GO:0006511;ubiquitin-dependent protein catabolic process;2.36446418821975e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;4.16380927819268e-12!GO:0005793;ER-Golgi intermediate compartment;4.48774179028958e-12!GO:0005730;nucleolus;4.63492364511432e-12!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.2510544088972e-11!GO:0016192;vesicle-mediated transport;1.47839934454372e-11!GO:0016462;pyrophosphatase activity;1.52649403745245e-11!GO:0016817;hydrolase activity, acting on acid anhydrides;1.59068516888315e-11!GO:0008219;cell death;1.67513940257535e-11!GO:0016265;death;1.67513940257535e-11!GO:0048193;Golgi vesicle transport;1.88371417887695e-11!GO:0048519;negative regulation of biological process;3.35435728116453e-11!GO:0009055;electron carrier activity;3.41314097385583e-11!GO:0006259;DNA metabolic process;3.47587459672773e-11!GO:0003712;transcription cofactor activity;6.57953607406522e-11!GO:0017111;nucleoside-triphosphatase activity;7.59564022445296e-11!GO:0043412;biopolymer modification;1.40860396590093e-10!GO:0003743;translation initiation factor activity;2.44234127739903e-10!GO:0006464;protein modification process;7.0769036580355e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;8.94082200679746e-10!GO:0051188;cofactor biosynthetic process;1.18849791669222e-09!GO:0007049;cell cycle;1.24820160933512e-09!GO:0005788;endoplasmic reticulum lumen;1.3813247191739e-09!GO:0006413;translational initiation;1.77139094579703e-09!GO:0000166;nucleotide binding;1.77750722229325e-09!GO:0006366;transcription from RNA polymerase II promoter;2.19169857143881e-09!GO:0009056;catabolic process;3.42258953711508e-09!GO:0006446;regulation of translational initiation;4.66043324823406e-09!GO:0016491;oxidoreductase activity;4.90146416346046e-09!GO:0009259;ribonucleotide metabolic process;6.53661221615508e-09!GO:0006163;purine nucleotide metabolic process;6.83421218128499e-09!GO:0009150;purine ribonucleotide metabolic process;7.07830845452e-09!GO:0000398;nuclear mRNA splicing, via spliceosome;7.52417829106799e-09!GO:0000375;RNA splicing, via transesterification reactions;7.52417829106799e-09!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;7.52417829106799e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;8.12045577867649e-09!GO:0008639;small protein conjugating enzyme activity;9.63672005030893e-09!GO:0016023;cytoplasmic membrane-bound vesicle;1.11775328275565e-08!GO:0009199;ribonucleoside triphosphate metabolic process;1.11775328275565e-08!GO:0009141;nucleoside triphosphate metabolic process;1.30397634022013e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.46763753372107e-08!GO:0009144;purine nucleoside triphosphate metabolic process;1.46763753372107e-08!GO:0031988;membrane-bound vesicle;1.54519718643381e-08!GO:0015078;hydrogen ion transmembrane transporter activity;1.79624352779665e-08!GO:0004842;ubiquitin-protein ligase activity;2.24349975243682e-08!GO:0008565;protein transporter activity;2.35238696185604e-08!GO:0043067;regulation of programmed cell death;2.35238696185604e-08!GO:0017038;protein import;2.42691928816308e-08!GO:0042981;regulation of apoptosis;2.60652612927032e-08!GO:0006461;protein complex assembly;3.4661580240554e-08!GO:0005773;vacuole;3.63901024500083e-08!GO:0015986;ATP synthesis coupled proton transport;3.74210226917099e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;3.74210226917099e-08!GO:0042254;ribosome biogenesis and assembly;3.95313068182184e-08!GO:0016564;transcription repressor activity;4.01750372886344e-08!GO:0006164;purine nucleotide biosynthetic process;4.13629200573256e-08!GO:0009152;purine ribonucleotide biosynthetic process;4.19451570307081e-08!GO:0019787;small conjugating protein ligase activity;5.24027425888539e-08!GO:0003676;nucleic acid binding;5.82303242495607e-08!GO:0019829;cation-transporting ATPase activity;6.39777292702243e-08!GO:0043687;post-translational protein modification;6.58794049928733e-08!GO:0005635;nuclear envelope;6.78454867442091e-08!GO:0046034;ATP metabolic process;7.10077162498064e-08!GO:0000074;regulation of progression through cell cycle;7.34882337802909e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;7.49277507728565e-08!GO:0051726;regulation of cell cycle;7.80828182329506e-08!GO:0005768;endosome;8.19278043617189e-08!GO:0009260;ribonucleotide biosynthetic process;8.21118261170162e-08!GO:0016469;proton-transporting two-sector ATPase complex;9.06041996636214e-08!GO:0051246;regulation of protein metabolic process;1.01088821233923e-07!GO:0016070;RNA metabolic process;1.02083128530853e-07!GO:0009142;nucleoside triphosphate biosynthetic process;1.03246187397677e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.03246187397677e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.04073128776583e-07!GO:0006913;nucleocytoplasmic transport;1.28841724938848e-07!GO:0007005;mitochondrion organization and biogenesis;1.3545390722976e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.35817596356633e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.35817596356633e-07!GO:0044431;Golgi apparatus part;1.42054838601057e-07!GO:0009108;coenzyme biosynthetic process;1.427041128384e-07!GO:0009060;aerobic respiration;1.48117575804181e-07!GO:0022402;cell cycle process;1.57953213001481e-07!GO:0008361;regulation of cell size;1.96174143722396e-07!GO:0051169;nuclear transport;2.12876180557663e-07!GO:0045786;negative regulation of progression through cell cycle;2.13297674530823e-07!GO:0031965;nuclear membrane;2.32690803599706e-07!GO:0031410;cytoplasmic vesicle;2.44421523106175e-07!GO:0016049;cell growth;2.46186476734232e-07!GO:0031982;vesicle;2.54915135587766e-07!GO:0045333;cellular respiration;2.66000382126205e-07!GO:0031324;negative regulation of cellular metabolic process;2.87506964924496e-07!GO:0003714;transcription corepressor activity;4.22420240803162e-07!GO:0016881;acid-amino acid ligase activity;5.42588157640471e-07!GO:0006399;tRNA metabolic process;5.48378052933638e-07!GO:0006754;ATP biosynthetic process;5.97369699433502e-07!GO:0006753;nucleoside phosphate metabolic process;5.97369699433502e-07!GO:0000323;lytic vacuole;6.41222841997406e-07!GO:0005764;lysosome;6.41222841997406e-07!GO:0006888;ER to Golgi vesicle-mediated transport;6.75335180838102e-07!GO:0006325;establishment and/or maintenance of chromatin architecture;7.05916335825146e-07!GO:0043069;negative regulation of programmed cell death;9.26161859312198e-07!GO:0009117;nucleotide metabolic process;9.48244601417283e-07!GO:0001558;regulation of cell growth;1.00097452025028e-06!GO:0032553;ribonucleotide binding;1.09184181858936e-06!GO:0032555;purine ribonucleotide binding;1.09184181858936e-06!GO:0016604;nuclear body;1.34847225136915e-06!GO:0009892;negative regulation of metabolic process;1.53743491809533e-06!GO:0030120;vesicle coat;1.53743491809533e-06!GO:0030662;coated vesicle membrane;1.53743491809533e-06!GO:0006091;generation of precursor metabolites and energy;1.60654453530757e-06!GO:0017076;purine nucleotide binding;1.60654453530757e-06!GO:0043066;negative regulation of apoptosis;1.62262310843842e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.7858084796085e-06!GO:0030532;small nuclear ribonucleoprotein complex;2.10251307689686e-06!GO:0006916;anti-apoptosis;2.26627877496386e-06!GO:0006323;DNA packaging;2.59025256330238e-06!GO:0048475;coated membrane;2.67857691130946e-06!GO:0030117;membrane coat;2.67857691130946e-06!GO:0045259;proton-transporting ATP synthase complex;2.69759498308368e-06!GO:0065004;protein-DNA complex assembly;3.08244883922965e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;3.94143850011058e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;4.30985569706024e-06!GO:0004812;aminoacyl-tRNA ligase activity;4.30985569706024e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;4.30985569706024e-06!GO:0006099;tricarboxylic acid cycle;4.30985569706024e-06!GO:0046356;acetyl-CoA catabolic process;4.30985569706024e-06!GO:0006752;group transfer coenzyme metabolic process;4.32195736235621e-06!GO:0005839;proteasome core complex (sensu Eukaryota);4.94958017353416e-06!GO:0044453;nuclear membrane part;5.67833567344253e-06!GO:0016563;transcription activator activity;5.67833567344253e-06!GO:0050794;regulation of cellular process;5.97672220565159e-06!GO:0005770;late endosome;6.00244545746509e-06!GO:0048522;positive regulation of cellular process;6.19645211634632e-06!GO:0008654;phospholipid biosynthetic process;6.21663724538125e-06!GO:0051187;cofactor catabolic process;6.69080112277829e-06!GO:0005762;mitochondrial large ribosomal subunit;7.07124521523025e-06!GO:0000315;organellar large ribosomal subunit;7.07124521523025e-06!GO:0031252;leading edge;7.18620744523032e-06!GO:0009109;coenzyme catabolic process;7.61317313906391e-06!GO:0019843;rRNA binding;8.223013194647e-06!GO:0065002;intracellular protein transport across a membrane;8.39423600420817e-06!GO:0043038;amino acid activation;8.62298254155544e-06!GO:0006418;tRNA aminoacylation for protein translation;8.62298254155544e-06!GO:0043039;tRNA aminoacylation;8.62298254155544e-06!GO:0045454;cell redox homeostasis;8.82414741785121e-06!GO:0015980;energy derivation by oxidation of organic compounds;8.95844039768694e-06!GO:0006084;acetyl-CoA metabolic process;9.7846081960426e-06!GO:0044262;cellular carbohydrate metabolic process;1.04176268931936e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.10780228879085e-05!GO:0000139;Golgi membrane;1.27226345180918e-05!GO:0030036;actin cytoskeleton organization and biogenesis;1.31988032588152e-05!GO:0006974;response to DNA damage stimulus;1.38747004273845e-05!GO:0044440;endosomal part;1.47545035134213e-05!GO:0010008;endosome membrane;1.47545035134213e-05!GO:0003924;GTPase activity;1.47616252664134e-05!GO:0040008;regulation of growth;2.05845750425127e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;2.0630109264667e-05!GO:0006333;chromatin assembly or disassembly;2.21623047379316e-05!GO:0042623;ATPase activity, coupled;2.51312177810963e-05!GO:0051789;response to protein stimulus;2.51312177810963e-05!GO:0006986;response to unfolded protein;2.51312177810963e-05!GO:0006364;rRNA processing;2.70123928033832e-05!GO:0016072;rRNA metabolic process;3.51680141319706e-05!GO:0005524;ATP binding;3.7158490321315e-05!GO:0006606;protein import into nucleus;4.02076142181002e-05!GO:0016887;ATPase activity;4.02819871007323e-05!GO:0032559;adenyl ribonucleotide binding;4.1305286074489e-05!GO:0009719;response to endogenous stimulus;4.19236398253715e-05!GO:0016607;nuclear speck;4.19236398253715e-05!GO:0051170;nuclear import;4.30973439569594e-05!GO:0004298;threonine endopeptidase activity;4.37579511202738e-05!GO:0005905;coated pit;4.520130969203e-05!GO:0032446;protein modification by small protein conjugation;4.72331345516464e-05!GO:0016567;protein ubiquitination;4.7708933622395e-05!GO:0000278;mitotic cell cycle;4.97543306317977e-05!GO:0016853;isomerase activity;5.33390976913102e-05!GO:0006334;nucleosome assembly;5.36616233308969e-05!GO:0016481;negative regulation of transcription;6.19269277062497e-05!GO:0051276;chromosome organization and biogenesis;6.3743110190791e-05!GO:0005798;Golgi-associated vesicle;6.48850616010915e-05!GO:0006613;cotranslational protein targeting to membrane;6.99242941143048e-05!GO:0030554;adenyl nucleotide binding;7.0851778476577e-05!GO:0003697;single-stranded DNA binding;7.25316830521252e-05!GO:0000151;ubiquitin ligase complex;7.25316830521252e-05!GO:0007050;cell cycle arrest;7.98337557367468e-05!GO:0031497;chromatin assembly;8.20774471060192e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;8.45089135536764e-05!GO:0003713;transcription coactivator activity;9.2417168554262e-05!GO:0005667;transcription factor complex;9.25158827343937e-05!GO:0033116;ER-Golgi intermediate compartment membrane;9.4210950311172e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000101987596002689!GO:0030133;transport vesicle;0.000106472217541348!GO:0050789;regulation of biological process;0.000106472217541348!GO:0008610;lipid biosynthetic process;0.000118180109595054!GO:0000314;organellar small ribosomal subunit;0.000145502220722212!GO:0005763;mitochondrial small ribosomal subunit;0.000145502220722212!GO:0030867;rough endoplasmic reticulum membrane;0.000146681965612437!GO:0031968;organelle outer membrane;0.000151926533660056!GO:0046474;glycerophospholipid biosynthetic process;0.00015650326467099!GO:0048468;cell development;0.000158063846331053!GO:0019867;outer membrane;0.000158307185002816!GO:0006793;phosphorus metabolic process;0.000171573695830671!GO:0006796;phosphate metabolic process;0.000171573695830671!GO:0000245;spliceosome assembly;0.000174979063233423!GO:0030029;actin filament-based process;0.000176120652530445!GO:0005643;nuclear pore;0.000178444947419324!GO:0016859;cis-trans isomerase activity;0.00018213850842871!GO:0000785;chromatin;0.00018213850842871!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000193287810776829!GO:0016740;transferase activity;0.000193438056941855!GO:0005791;rough endoplasmic reticulum;0.000196716970548343!GO:0007243;protein kinase cascade;0.000228025745051766!GO:0043623;cellular protein complex assembly;0.000230645533664812!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000285437837084764!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.000306441842296958!GO:0005741;mitochondrial outer membrane;0.000370303493437848!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000371380705514415!GO:0005048;signal sequence binding;0.000375979599926113!GO:0048518;positive regulation of biological process;0.000397297120962814!GO:0016310;phosphorylation;0.000417965469937577!GO:0007040;lysosome organization and biogenesis;0.000427307952172141!GO:0006979;response to oxidative stress;0.000432282852551228!GO:0043681;protein import into mitochondrion;0.000463462036566425!GO:0016044;membrane organization and biogenesis;0.000481320568311813!GO:0033673;negative regulation of kinase activity;0.000513351202377016!GO:0006469;negative regulation of protein kinase activity;0.000513351202377016!GO:0043021;ribonucleoprotein binding;0.000536564731367829!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000549871276470305!GO:0043566;structure-specific DNA binding;0.000567322615366816!GO:0008092;cytoskeletal protein binding;0.000589833229279776!GO:0046930;pore complex;0.000594497803960943!GO:0005774;vacuolar membrane;0.000597048839650738!GO:0019899;enzyme binding;0.000598733087134515!GO:0004576;oligosaccharyl transferase activity;0.000612883607725125!GO:0008250;oligosaccharyl transferase complex;0.000629093659236412!GO:0007033;vacuole organization and biogenesis;0.000696824616491505!GO:0016126;sterol biosynthetic process;0.000724255646230792!GO:0005885;Arp2/3 protein complex;0.000755085812960201!GO:0046467;membrane lipid biosynthetic process;0.000756873196703339!GO:0030176;integral to endoplasmic reticulum membrane;0.000770042025289552!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000820216185520611!GO:0045941;positive regulation of transcription;0.00083103296926224!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00084790121214472!GO:0005525;GTP binding;0.000907843901616531!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000911561309207561!GO:0005769;early endosome;0.000944993343030366!GO:0007006;mitochondrial membrane organization and biogenesis;0.00098161387525133!GO:0051427;hormone receptor binding;0.0011108498512998!GO:0008637;apoptotic mitochondrial changes;0.00113717771416361!GO:0051920;peroxiredoxin activity;0.00122582694198037!GO:0022890;inorganic cation transmembrane transporter activity;0.00122714992717281!GO:0051348;negative regulation of transferase activity;0.00127760557918452!GO:0008026;ATP-dependent helicase activity;0.00130925365350667!GO:0016787;hydrolase activity;0.00132966157313797!GO:0005581;collagen;0.00142470263244591!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00142470263244591!GO:0015399;primary active transmembrane transporter activity;0.00142470263244591!GO:0009165;nucleotide biosynthetic process;0.00145871618733606!GO:0007010;cytoskeleton organization and biogenesis;0.00146596637736357!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00146596637736357!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00146596637736357!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00146596637736357!GO:0006281;DNA repair;0.00150778558122856!GO:0043488;regulation of mRNA stability;0.00155828527871934!GO:0043487;regulation of RNA stability;0.00155828527871934!GO:0018196;peptidyl-asparagine modification;0.00155828527871934!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00155828527871934!GO:0043284;biopolymer biosynthetic process;0.00169478457817912!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00174298018458928!GO:0015002;heme-copper terminal oxidase activity;0.00174298018458928!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00174298018458928!GO:0004129;cytochrome-c oxidase activity;0.00174298018458928!GO:0065009;regulation of a molecular function;0.00182270753060298!GO:0001836;release of cytochrome c from mitochondria;0.00185505387972502!GO:0044437;vacuolar part;0.00185505387972502!GO:0006082;organic acid metabolic process;0.0018838304080932!GO:0051128;regulation of cellular component organization and biogenesis;0.00194240558041677!GO:0035257;nuclear hormone receptor binding;0.00200946098303022!GO:0030663;COPI coated vesicle membrane;0.00202653420032774!GO:0030126;COPI vesicle coat;0.00202653420032774!GO:0006612;protein targeting to membrane;0.00204518868805526!GO:0043065;positive regulation of apoptosis;0.00211676703082169!GO:0045893;positive regulation of transcription, DNA-dependent;0.0021372305704256!GO:0005765;lysosomal membrane;0.0022567225005809!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.00228528884493672!GO:0019752;carboxylic acid metabolic process;0.00228830662456968!GO:0048471;perinuclear region of cytoplasm;0.0023302048765207!GO:0051329;interphase of mitotic cell cycle;0.00239789288034591!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00241273258151962!GO:0016568;chromatin modification;0.00243237272600804!GO:0043068;positive regulation of programmed cell death;0.00246500739215651!GO:0004177;aminopeptidase activity;0.0024864487950021!GO:0051325;interphase;0.00254976171944916!GO:0042802;identical protein binding;0.00256680186337279!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00269675252380587!GO:0045892;negative regulation of transcription, DNA-dependent;0.00280585663965013!GO:0005694;chromosome;0.00302132621305332!GO:0006260;DNA replication;0.0030389802137201!GO:0016779;nucleotidyltransferase activity;0.00309275715635519!GO:0005583;fibrillar collagen;0.0031863788253897!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00333239798375907!GO:0005813;centrosome;0.00352156802084898!GO:0004860;protein kinase inhibitor activity;0.00356663701588401!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00357868046445434!GO:0030137;COPI-coated vesicle;0.00357868046445434!GO:0004386;helicase activity;0.00387351147474031!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00396453337540976!GO:0048487;beta-tubulin binding;0.00400263950753818!GO:0032561;guanyl ribonucleotide binding;0.00409565764815195!GO:0019001;guanyl nucleotide binding;0.00409565764815195!GO:0030132;clathrin coat of coated pit;0.00411683948575548!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00424665780157839!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00424665780157839!GO:0008286;insulin receptor signaling pathway;0.0042790623293217!GO:0006839;mitochondrial transport;0.00430447914105599!GO:0030027;lamellipodium;0.00442193827839581!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00472506733767473!GO:0006414;translational elongation;0.00474176048027694!GO:0015992;proton transport;0.00481379804146972!GO:0005520;insulin-like growth factor binding;0.00481379804146972!GO:0006626;protein targeting to mitochondrion;0.00486535760307086!GO:0008629;induction of apoptosis by intracellular signals;0.00487337802437383!GO:0030041;actin filament polymerization;0.00488646879707664!GO:0008154;actin polymerization and/or depolymerization;0.00491716716229233!GO:0008283;cell proliferation;0.00498281155338518!GO:0030503;regulation of cell redox homeostasis;0.00527323366886873!GO:0046489;phosphoinositide biosynthetic process;0.00529130318557072!GO:0051287;NAD binding;0.00537237338015544!GO:0005815;microtubule organizing center;0.00539993571809678!GO:0030118;clathrin coat;0.00555896032410153!GO:0003724;RNA helicase activity;0.00557906719172424!GO:0003899;DNA-directed RNA polymerase activity;0.00572629540495118!GO:0050657;nucleic acid transport;0.00577214278133255!GO:0051236;establishment of RNA localization;0.00577214278133255!GO:0050658;RNA transport;0.00577214278133255!GO:0008632;apoptotic program;0.00601537037375467!GO:0000786;nucleosome;0.00604353755138688!GO:0006695;cholesterol biosynthetic process;0.00606596641875684!GO:0006403;RNA localization;0.00612388027984401!GO:0006818;hydrogen transport;0.00616806013097329!GO:0031902;late endosome membrane;0.00618806250055168!GO:0030659;cytoplasmic vesicle membrane;0.00619187905466084!GO:0006509;membrane protein ectodomain proteolysis;0.00623900771264037!GO:0033619;membrane protein proteolysis;0.00623900771264037!GO:0003746;translation elongation factor activity;0.00707911608124731!GO:0031072;heat shock protein binding;0.00727839810052109!GO:0005869;dynactin complex;0.00727839810052109!GO:0015630;microtubule cytoskeleton;0.00745059253662919!GO:0043492;ATPase activity, coupled to movement of substances;0.0076676094099986!GO:0043433;negative regulation of transcription factor activity;0.00770376235790328!GO:0016860;intramolecular oxidoreductase activity;0.00792183325838709!GO:0044433;cytoplasmic vesicle part;0.00823539601077384!GO:0048500;signal recognition particle;0.00837892493601662!GO:0017166;vinculin binding;0.00852803271653201!GO:0051252;regulation of RNA metabolic process;0.00875278074105417!GO:0016408;C-acyltransferase activity;0.0088242194007451!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00892709834838119!GO:0008652;amino acid biosynthetic process;0.00895371897578479!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00896715757531967!GO:0045936;negative regulation of phosphate metabolic process;0.00905495912036422!GO:0005975;carbohydrate metabolic process;0.00923318329481957!GO:0051087;chaperone binding;0.00959746567651431!GO:0045792;negative regulation of cell size;0.00976820998653377!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00987765642657159!GO:0030308;negative regulation of cell growth;0.00987765642657159!GO:0006643;membrane lipid metabolic process;0.00992805322288436!GO:0001726;ruffle;0.00993721928130358!GO:0003756;protein disulfide isomerase activity;0.00995362763801792!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.00995362763801792!GO:0006778;porphyrin metabolic process;0.010269034476748!GO:0033013;tetrapyrrole metabolic process;0.010269034476748!GO:0009967;positive regulation of signal transduction;0.0103723051420658!GO:0051101;regulation of DNA binding;0.0104361850809817!GO:0000030;mannosyltransferase activity;0.0104631179810955!GO:0001527;microfibril;0.0106268360983197!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0106268360983197!GO:0044427;chromosomal part;0.0106491482126951!GO:0030031;cell projection biogenesis;0.0106491482126951!GO:0006595;polyamine metabolic process;0.0106526586292648!GO:0007034;vacuolar transport;0.0110142226232428!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0112620706164018!GO:0044420;extracellular matrix part;0.0112693888757001!GO:0006749;glutathione metabolic process;0.011346058632639!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0113538340009386!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0114121073125484!GO:0003729;mRNA binding;0.0115420599387211!GO:0006650;glycerophospholipid metabolic process;0.0117649592628852!GO:0043022;ribosome binding;0.0120276694610295!GO:0000049;tRNA binding;0.012660561766178!GO:0051098;regulation of binding;0.012660561766178!GO:0012506;vesicle membrane;0.0132000822399222!GO:0006066;alcohol metabolic process;0.0134325076464173!GO:0016197;endosome transport;0.0138476277757641!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0140652003180201!GO:0045047;protein targeting to ER;0.0140652003180201!GO:0006891;intra-Golgi vesicle-mediated transport;0.0144771991609969!GO:0031589;cell-substrate adhesion;0.0146386226180843!GO:0005684;U2-dependent spliceosome;0.0147565050786502!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0148950356949461!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.0148950356949461!GO:0006779;porphyrin biosynthetic process;0.0154263871094514!GO:0033014;tetrapyrrole biosynthetic process;0.0154263871094514!GO:0031301;integral to organelle membrane;0.0155787514996238!GO:0008033;tRNA processing;0.0156505850842867!GO:0035258;steroid hormone receptor binding;0.0157312429306698!GO:0050811;GABA receptor binding;0.0157510557007766!GO:0000902;cell morphogenesis;0.0158375223190194!GO:0032989;cellular structure morphogenesis;0.0158375223190194!GO:0008180;signalosome;0.0159741128265681!GO:0030658;transport vesicle membrane;0.0160777624759557!GO:0003702;RNA polymerase II transcription factor activity;0.0167157741750731!GO:0065007;biological regulation;0.0169762448105218!GO:0043086;negative regulation of catalytic activity;0.0169995372112627!GO:0030134;ER to Golgi transport vesicle;0.0171981591982528!GO:0033559;unsaturated fatty acid metabolic process;0.017204366689196!GO:0006636;unsaturated fatty acid biosynthetic process;0.017204366689196!GO:0050662;coenzyme binding;0.0173712395521216!GO:0015631;tubulin binding;0.0173712395521216!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0175120436627792!GO:0033043;regulation of organelle organization and biogenesis;0.0175120436627792!GO:0045926;negative regulation of growth;0.0175120436627792!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0177498037489306!GO:0001666;response to hypoxia;0.0177954042663353!GO:0006383;transcription from RNA polymerase III promoter;0.0177954042663353!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0177954042663353!GO:0006917;induction of apoptosis;0.0177954042663353!GO:0008139;nuclear localization sequence binding;0.0177954042663353!GO:0006740;NADPH regeneration;0.0178776837980591!GO:0006098;pentose-phosphate shunt;0.0178776837980591!GO:0022403;cell cycle phase;0.0179553386645729!GO:0035035;histone acetyltransferase binding;0.0180214021857597!GO:0019210;kinase inhibitor activity;0.0180420553543321!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.0181762221525123!GO:0006354;RNA elongation;0.0182234233428538!GO:0006984;ER-nuclear signaling pathway;0.0184078963522484!GO:0030145;manganese ion binding;0.0187234717203304!GO:0042326;negative regulation of phosphorylation;0.018785540355116!GO:0051540;metal cluster binding;0.0189773142224721!GO:0051536;iron-sulfur cluster binding;0.0189773142224721!GO:0030880;RNA polymerase complex;0.0193156655712624!GO:0031418;L-ascorbic acid binding;0.0193857384248161!GO:0006402;mRNA catabolic process;0.0194737225017723!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0194922352370709!GO:0051059;NF-kappaB binding;0.0195726588183498!GO:0006506;GPI anchor biosynthetic process;0.0199477585587451!GO:0046483;heterocycle metabolic process;0.0202160708303933!GO:0051235;maintenance of localization;0.0204490153133213!GO:0007179;transforming growth factor beta receptor signaling pathway;0.0204600608480187!GO:0008312;7S RNA binding;0.0206062129246373!GO:0019318;hexose metabolic process;0.020636966515896!GO:0030127;COPII vesicle coat;0.0207146078017825!GO:0012507;ER to Golgi transport vesicle membrane;0.0207146078017825!GO:0000096;sulfur amino acid metabolic process;0.0208182176021084!GO:0006807;nitrogen compound metabolic process;0.0208380153298041!GO:0007160;cell-matrix adhesion;0.0211801752498973!GO:0016584;nucleosome positioning;0.0212378704178354!GO:0045045;secretory pathway;0.0212378704178354!GO:0048037;cofactor binding;0.0214048537255026!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0220681114717304!GO:0006417;regulation of translation;0.0220738111758443!GO:0007041;lysosomal transport;0.0227304494888494!GO:0012502;induction of programmed cell death;0.022898707757429!GO:0006118;electron transport;0.0237728125584897!GO:0044255;cellular lipid metabolic process;0.0238915040874745!GO:0003711;transcription elongation regulator activity;0.0243169804619386!GO:0046519;sphingoid metabolic process;0.0246381666193541!GO:0007264;small GTPase mediated signal transduction;0.0246381666193541!GO:0006497;protein amino acid lipidation;0.0246777950894552!GO:0000087;M phase of mitotic cell cycle;0.0253220473190076!GO:0005996;monosaccharide metabolic process;0.025498340887395!GO:0005862;muscle thin filament tropomyosin;0.025536640385793!GO:0007067;mitosis;0.0259271146862!GO:0042158;lipoprotein biosynthetic process;0.0259271146862!GO:0006790;sulfur metabolic process;0.0264510405164505!GO:0051539;4 iron, 4 sulfur cluster binding;0.0272105894908936!GO:0008186;RNA-dependent ATPase activity;0.027214948646304!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0272550108374874!GO:0010257;NADH dehydrogenase complex assembly;0.0272550108374874!GO:0033108;mitochondrial respiratory chain complex assembly;0.0272550108374874!GO:0006401;RNA catabolic process;0.0280548230373889!GO:0030521;androgen receptor signaling pathway;0.0282668963677767!GO:0046870;cadmium ion binding;0.0282762432019326!GO:0000059;protein import into nucleus, docking;0.0287069386500985!GO:0006505;GPI anchor metabolic process;0.0287069386500985!GO:0030433;ER-associated protein catabolic process;0.0287069386500985!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0287069386500985!GO:0031543;peptidyl-proline dioxygenase activity;0.0289564963201175!GO:0030833;regulation of actin filament polymerization;0.029348977455579!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0305143778130771!GO:0008147;structural constituent of bone;0.0306404137539526!GO:0043154;negative regulation of caspase activity;0.0308280247459577!GO:0009303;rRNA transcription;0.0310520013492452!GO:0031272;regulation of pseudopodium formation;0.0310520013492452!GO:0031269;pseudopodium formation;0.0310520013492452!GO:0031344;regulation of cell projection organization and biogenesis;0.0310520013492452!GO:0031268;pseudopodium organization and biogenesis;0.0310520013492452!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0310520013492452!GO:0031274;positive regulation of pseudopodium formation;0.0310520013492452!GO:0005832;chaperonin-containing T-complex;0.0314579360277741!GO:0009893;positive regulation of metabolic process;0.0316649915778215!GO:0048144;fibroblast proliferation;0.0324673963504508!GO:0048145;regulation of fibroblast proliferation;0.0324673963504508!GO:0016363;nuclear matrix;0.0328246354566746!GO:0006644;phospholipid metabolic process;0.0331808289656496!GO:0030119;AP-type membrane coat adaptor complex;0.0331816780826761!GO:0040029;regulation of gene expression, epigenetic;0.0333234860975997!GO:0042168;heme metabolic process;0.0337666296795293!GO:0019798;procollagen-proline dioxygenase activity;0.0339140942488686!GO:0051168;nuclear export;0.0340031128041358!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0340061154852828!GO:0000082;G1/S transition of mitotic cell cycle;0.0345780734447554!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0360737782023479!GO:0030660;Golgi-associated vesicle membrane;0.0363669058299341!GO:0050790;regulation of catalytic activity;0.0368967457916219!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0373552740168165!GO:0000428;DNA-directed RNA polymerase complex;0.0373552740168165!GO:0009889;regulation of biosynthetic process;0.0373552740168165!GO:0001953;negative regulation of cell-matrix adhesion;0.0373759494770099!GO:0048146;positive regulation of fibroblast proliferation;0.0381728452510987!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.038241457472006!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.038241457472006!GO:0006733;oxidoreduction coenzyme metabolic process;0.0383210815061648!GO:0030508;thiol-disulfide exchange intermediate activity;0.0385604642240567!GO:0051270;regulation of cell motility;0.038880748555054!GO:0006458;'de novo' protein folding;0.0398647992797028!GO:0051084;'de novo' posttranslational protein folding;0.0398647992797028!GO:0006672;ceramide metabolic process;0.0404808915558371!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0406278481041069!GO:0031326;regulation of cellular biosynthetic process;0.0406497105255289!GO:0016407;acetyltransferase activity;0.0409741481308676!GO:0009308;amine metabolic process;0.0409741481308676!GO:0046426;negative regulation of JAK-STAT cascade;0.0410456297595158!GO:0006352;transcription initiation;0.0412923214840535!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0418069370105982!GO:0051338;regulation of transferase activity;0.0421988998394058!GO:0051028;mRNA transport;0.0423688863547964!GO:0019206;nucleoside kinase activity;0.0427243103240926!GO:0032507;maintenance of cellular protein localization;0.0427309196986474!GO:0030518;steroid hormone receptor signaling pathway;0.0430238742540127!GO:0030832;regulation of actin filament length;0.0437965752628273!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0440671218649684!GO:0055092;sterol homeostasis;0.0440671218649684!GO:0042632;cholesterol homeostasis;0.0440671218649684!GO:0031901;early endosome membrane;0.0443767819861581!GO:0006914;autophagy;0.0444811261831399!GO:0031529;ruffle organization and biogenesis;0.0447459246945568!GO:0031625;ubiquitin protein ligase binding;0.0449977197573172!GO:0030199;collagen fibril organization;0.0450375144238964!GO:0030125;clathrin vesicle coat;0.0453167290812098!GO:0030665;clathrin coated vesicle membrane;0.0453167290812098!GO:0016272;prefoldin complex;0.0454442819143392!GO:0006892;post-Golgi vesicle-mediated transport;0.0454784020124706!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0459455450828832!GO:0022408;negative regulation of cell-cell adhesion;0.0463024575922459!GO:0006013;mannose metabolic process;0.0474205831171545!GO:0006950;response to stress;0.0491370309730818
|sample_id=11425
|sample_note=
|sample_sex=male
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=bone
|top_motifs=HES1:1.77216532903;ZNF238:1.60185312871;TBP:1.44554122148;IKZF1:1.43376415925;ZNF423:1.3601962402;MTF1:1.3137049724;ESR1:1.24943103433;RXR{A,B,G}:1.24858552675;GLI1..3:1.24746777343;HMX1:1.21892174947;TAL1_TCF{3,4,12}:1.1608779121;bHLH_family:1.13239092173;TFAP4:1.05588170978;TLX1..3_NFIC{dimer}:1.03787041297;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.02876197408;ZNF148:0.98609783503;ATF6:0.976909935083;XBP1:0.972148112313;GFI1B:0.906529691588;TFCP2:0.9052599199;UFEwm:0.895982859092;RXRA_VDR{dimer}:0.872190940129;SPZ1:0.86115044644;TFAP2B:0.860337803311;NR3C1:0.849276761362;GTF2A1,2:0.842171550488;LHX3,4:0.835492971852;NHLH1,2:0.825345799893;HOX{A6,A7,B6,B7}:0.813325242657;EBF1:0.795213424921;PAX5:0.790334825559;NR6A1:0.763044446901;GTF2I:0.731209209722;HIC1:0.727293228587;AR:0.711200609046;MAZ:0.692663473893;GCM1,2:0.676321669906;TFAP2{A,C}:0.65819802874;TP53:0.644221194065;MAFB:0.641691244497;SMAD1..7,9:0.569408614678;TEAD1:0.560022967723;MED-1{core}:0.536503402992;STAT5{A,B}:0.522718204899;PATZ1:0.510246470531;PPARG:0.47085282058;ZBTB6:0.433860835962;RREB1:0.425886064287;SREBF1,2:0.408653121464;MYFfamily:0.403987337741;HOX{A5,B5}:0.377411649254;SP1:0.346998186433;SRF:0.311528237737;GFI1:0.301784920416;ALX4:0.287879606091;KLF4:0.279992938543;XCPE1{core}:0.278724069296;EGR1..3:0.273365063512;HLF:0.261327575498;ZNF384:0.257778845565;MZF1:0.256467748354;FOXO1,3,4:0.254701785753;NFATC1..3:0.240179713267;REST:0.236832983289;NFE2L1:0.232739332259;HAND1,2:0.231043940661;MYBL2:0.22736498713;SOX17:0.178688547662;POU3F1..4:0.131919665677;GZF1:0.118144409336;MTE{core}:0.107594444281;AIRE:0.0859279553855;PAX1,9:0.0803055502461;YY1:0.0795808714296;STAT2,4,6:0.0719247824139;NR1H4:0.0702403389982;AHR_ARNT_ARNT2:0.0641851157455;ZIC1..3:0.0514726314997;POU2F1..3:0.0422756711484;NANOG{mouse}:0.0356070405151;POU6F1:0.0200538422302;PRRX1,2:0.014487031628;RORA:-0.020645582271;NKX2-3_NKX2-5:-0.0489538770293;FOS_FOS{B,L1}_JUN{B,D}:-0.0522759201472;HNF1A:-0.0719518125605;ZNF143:-0.0740155326071;NR5A1,2:-0.0764458806688;BACH2:-0.0914738494219;TBX4,5:-0.107954397595;TFDP1:-0.113478417542;HIF1A:-0.118299634311;ESRRA:-0.124650334788;FOXL1:-0.125514703178;RFX1:-0.1327071915;HNF4A_NR2F1,2:-0.138901229558;NFE2L2:-0.15952433543;LEF1_TCF7_TCF7L1,2:-0.17119753991;PRDM1:-0.174948403029;NFE2:-0.179991370431;TOPORS:-0.187533529178;FOSL2:-0.191445373322;TGIF1:-0.19656047264;NFIX:-0.198944332639;CEBPA,B_DDIT3:-0.214417576824;MEF2{A,B,C,D}:-0.217214934812;MYOD1:-0.255520964877;ZFP161:-0.277116599596;NKX3-2:-0.277447064291;NFIL3:-0.281178646088;NFY{A,B,C}:-0.287257533173;EN1,2:-0.292642257055;RUNX1..3:-0.319057265435;BREu{core}:-0.32314955516;JUN:-0.329286018684;NKX2-2,8:-0.360746570869;EVI1:-0.362604958699;NFKB1_REL_RELA:-0.363552588488;VSX1,2:-0.364154218539;ADNP_IRX_SIX_ZHX:-0.367224085257;SOX5:-0.388399573275;ALX1:-0.390846840247;NKX3-1:-0.393290226661;PBX1:-0.405162123977;DBP:-0.409073205545;FOX{D1,D2}:-0.411690475467;PAX6:-0.441976386587;GATA4:-0.472681555714;CDC5L:-0.491590860585;ARID5B:-0.491972251554;ZEB1:-0.497345128866;HOX{A4,D4}:-0.499627352393;PAX8:-0.504499321175;FOXP3:-0.527993971755;ONECUT1,2:-0.53313507069;ATF2:-0.537240692652;STAT1,3:-0.542841769046;GATA6:-0.557299406641;LMO2:-0.558458965088;SOX{8,9,10}:-0.562299570695;CDX1,2,4:-0.563676144486;POU5F1:-0.576618760336;RBPJ:-0.578533654534;TLX2:-0.580435393355;CREB1:-0.583828863122;SPI1:-0.585358812898;NRF1:-0.587866799909;ATF4:-0.607067724236;FOXM1:-0.613133959575;NKX2-1,4:-0.616158595562;FOX{F1,F2,J1}:-0.618435652562;ETS1,2:-0.625104225367;CUX2:-0.628106126755;NANOG:-0.667684789628;SNAI1..3:-0.672654228451;PAX4:-0.681202371905;PAX2:-0.681248263488;MYB:-0.681612144069;DMAP1_NCOR{1,2}_SMARC:-0.692585206396;IRF1,2:-0.70365737285;SPIB:-0.705159491586;NKX6-1,2:-0.705246088339;ATF5_CREB3:-0.707986884341;PITX1..3:-0.710687180371;ELK1,4_GABP{A,B1}:-0.719782741067;TEF:-0.720394588884;HSF1,2:-0.728065614022;HMGA1,2:-0.729469879695;FOXQ1:-0.757979932638;POU1F1:-0.788779319805;SOX2:-0.789305952704;RFX2..5_RFXANK_RFXAP:-0.810659678785;EP300:-0.812958365813;BPTF:-0.832594207471;IRF7:-0.836007486539;E2F1..5:-0.85605316677;ZBTB16:-0.865722551759;HOXA9_MEIS1:-0.963255927983;OCT4_SOX2{dimer}:-0.983759783209;HBP1_HMGB_SSRP1_UBTF:-1.05095193765;ELF1,2,4:-1.08104340104;PAX3,7:-1.16146065779;FOXA2:-1.26914796718;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.27418855585;FOX{I1,J2}:-1.31781257113;IKZF2:-1.45222535354;T:-1.46259123685;CRX:-1.46489331714;FOXD3:-1.51472195341;FOXP1:-1.53176301624;FOXN1:-1.63502948034;PDX1:-1.91137948069
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11425-118G3;search_select_hide=table117:FF:11425-118G3
}}
}}

Latest revision as of 18:00, 4 June 2020

Name:Osteoblast - differentiated, donor3
Species:Human (Homo sapiens)
Library ID:CNhs12035
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuebone
dev stage18 weeks old fetus
sexmale
ageembryo 18 week
cell typeosteocyte
cell lineNA
companyCell Applications
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number1266
catalog numberCA406D-R10f
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004715
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12035 CAGE DRX008391 DRR009263
Accession ID Hg19

Library idBAMCTSS
CNhs12035 DRZ000688 DRZ002073
Accession ID Hg38

Library idBAMCTSS
CNhs12035 DRZ012038 DRZ013423
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00004715
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10015.CAGATC sRNA-Seq DRX037252 DRR041618
Accession ID Hg19

Library idBAMCTSS
SRhi10015.CAGATC DRZ007260


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.072
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.294
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.236
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.309
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.172
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.313
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.487
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.456
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0.487
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.609
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0.309
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.139
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.23
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.791
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.34
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.309
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.487
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.613
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12035

Jaspar motifP-value
MA0002.20.225
MA0003.10.127
MA0004.10.188
MA0006.10.158
MA0007.10.0889
MA0009.10.127
MA0014.10.872
MA0017.10.499
MA0018.20.00752
MA0019.10.3
MA0024.10.00119
MA0025.10.0926
MA0027.10.952
MA0028.10.00245
MA0029.10.469
MA0030.10.949
MA0031.10.416
MA0035.20.924
MA0038.10.352
MA0039.20.436
MA0040.10.893
MA0041.10.308
MA0042.10.603
MA0043.10.0273
MA0046.10.846
MA0047.20.792
MA0048.10.646
MA0050.11.98312e-4
MA0051.10.0136
MA0052.10.657
MA0055.10.793
MA0057.10.442
MA0058.10.0925
MA0059.10.892
MA0060.10.8
MA0061.10.136
MA0062.21.12364e-9
MA0065.20.623
MA0066.10.738
MA0067.10.0626
MA0068.10.937
MA0069.10.682
MA0070.10.363
MA0071.10.612
MA0072.10.79
MA0073.10.829
MA0074.10.32
MA0076.11.09542e-4
MA0077.10.794
MA0078.10.69
MA0079.20.328
MA0080.23.61176e-8
MA0081.12.52732e-4
MA0083.10.0667
MA0084.10.956
MA0087.10.846
MA0088.10.884
MA0090.10.0356
MA0091.10.0153
MA0092.10.263
MA0093.10.171
MA0099.20.083
MA0100.10.0269
MA0101.10.0129
MA0102.20.237
MA0103.10.397
MA0104.20.635
MA0105.10.0668
MA0106.10.936
MA0107.10.0155
MA0108.21.29209e-13
MA0111.10.217
MA0112.20.153
MA0113.10.0208
MA0114.10.259
MA0115.10.0345
MA0116.10.0868
MA0117.10.154
MA0119.10.182
MA0122.10.996
MA0124.10.143
MA0125.10.949
MA0131.10.131
MA0135.10.056
MA0136.12.53926e-11
MA0137.20.404
MA0138.20.104
MA0139.10.724
MA0140.10.557
MA0141.10.687
MA0142.10.536
MA0143.10.509
MA0144.10.93
MA0145.10.813
MA0146.10.285
MA0147.10.323
MA0148.10.418
MA0149.10.236
MA0150.10.0411
MA0152.10.703
MA0153.10.214
MA0154.10.803
MA0155.10.0419
MA0156.15.36284e-11
MA0157.10.416
MA0159.10.941
MA0160.10.461
MA0162.10.0403
MA0163.10.893
MA0164.10.571
MA0258.10.593
MA0259.10.317



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12035

Novel motifP-value
10.407
100.151
1000.728
1010.588
1020.542
1030.634
1040.342
1050.866
1060.323
1070.0448
1080.286
1090.569
110.768
1100.807
1110.571
1120.892
1130.638
1140.366
1150.00379
1160.0313
1170.232
1180.457
1190.854
120.515
1200.115
1210.465
1220.228
1238.39511e-4
1240.0183
1250.916
1260.777
1270.971
1280.0469
1290.828
130.493
1300.343
1310.319
1320.0622
1330.182
1340.978
1350.915
1360.962
1370.019
1380.678
1390.798
140.82
1400.573
1410.117
1420.0581
1430.59
1440.877
1450.656
1460.139
1470.414
1480.862
1490.0396
150.352
1500.284
1510.517
1520.0098
1530.879
1540.144
1550.32
1560.748
1570.5
1580.1
1590.636
160.379
1600.495
1610.611
1620.27
1630.155
1640.703
1650.774
1660.103
1670.353
1680.955
1690.264
170.952
180.337
190.113
20.122
200.531
210.76
220.265
230.844
240.807
250.115
260.98
270.388
280.0614
290.341
30.448
300.375
310.243
323.19379e-8
330.684
340.648
350.342
360.128
370.211
380.946
390.496
40.937
400.777
410.113
420.0764
430.802
440.945
450.501
460.91
470.516
480.996
490.768
50.381
500.873
510.477
520.335
530.19
540.523
550.625
560.826
570.539
580.0973
590.0747
60.977
600.677
610.813
620.0933
630.779
640.787
650.201
660.727
670.94
680.267
690.334
70.128
700.977
710.243
720.863
730.00356
740.76
750.473
760.299
770.0936
780.179
790.0522
80.171
800.602
810.91
820.885
830.374
840.359
850.214
860.657
870.0733
880.33
890.112
90.269
900.00392
910.738
920.515
930.944
940.213
950.779
960.94
970.41
980.964
990.0179



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12035


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000055 (non-terminally differentiated cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000062 (osteoblast)

UBERON: Anatomy
0002384 (connective tissue)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000127 (human osteoblast-Sciencell sample)
0000128 (human osteoblast-Cell applications sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
CL:0000335 (mesenchyme condensation cell)

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