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(Created page with "{{f5samples |id=FF:11687-122I4 |name=Corneal Epithelial Cells, donor3 |sample_id=11687 |rna_tube_id=122I4 |rna_box=122 |rna_position=I4 |sample_cell_lot=N/A |sample_ce...")
 
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{{f5samples
{{f5samples
|id=FF:11687-122I4
|DRA_sample_Accession=CAGE@SAMD00005608
|name=Corneal Epithelial Cells, donor3
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005608
|sample_id=11687
|accession_numbers=CAGE;DRX008211;DRR009083;DRZ000508;DRZ001893;DRZ011858;DRZ013243
|rna_tube_id=122I4
|accession_numbers_RNASeq=sRNA-Seq;DRX037261;DRR041627;DRZ007269
|rna_box=122
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000970,UBERON:0000019,UBERON:0000033,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0000047,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0010313,UBERON:0001062,UBERON:0000480,UBERON:0003102,UBERON:0000020,UBERON:0001032,UBERON:0010317,UBERON:0000964,UBERON:0004088,UBERON:0000153,UBERON:0007811,UBERON:0002104,UBERON:0001801,UBERON:0010409,UBERON:0004456,UBERON:0001456,UBERON:0010230
|rna_position=I4
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000076,CL:0002159,CL:0000255,CL:0002077,CL:0000575
|sample_cell_lot=N/A
|sample_cell_catalog=lot:4545
|sample_company=Sciencell/3H
|rna_lot_number=
|rna_catalog_number=SC6515
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=
|sample_tissue=eye
|sample_donor(cell lot)=
|sample_sex=
|sample_age=
|sample_ethnicity=
|rna_rin=9.90000
|rna_od260/230=
|rna_od260/280=
|sample_cell_type=corneal epithelial cell
|sample_cell_line=
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0
|rna_weight_ug=10.00000
|rna_concentration=1.25000
|sample_note=
|profile_hcage=CNhs12123,LSID839,release011,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=SRhi10015,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000063,CL:0000066,CL:0000076,CL:0000144,CL:0000220,CL:0000221,CL:0000255,CL:0000548,CL:0000575,CL:0002077,CL:0002159,CL:0002321,CL:0002371
|ancestors_in_anatomy_facet=UBERON:0000019,UBERON:0000020,UBERON:0000033,UBERON:0000047,UBERON:0000061,UBERON:0000062,UBERON:0000063,UBERON:0000064,UBERON:0000153,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000479,UBERON:0000480,UBERON:0000922,UBERON:0000923,UBERON:0000924,UBERON:0000964,UBERON:0000970,UBERON:0001032,UBERON:0001048,UBERON:0001062,UBERON:0001444,UBERON:0001456,UBERON:0001801,UBERON:0002050,UBERON:0002104,UBERON:0002342,UBERON:0002346,UBERON:0002532,UBERON:0003075,UBERON:0003102,UBERON:0004121,UBERON:0004456,UBERON:0005423,UBERON:0005427,UBERON:0006598,UBERON:0007284
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000043
 
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
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|ffid_belonging_in_development=CL:0000221
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|fonse_cell_line_closure=
Line 67: Line 43:
|fonse_treatment=
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|fonse_treatment_closure=
|fonse_treatment_closure=
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|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Corneal%2520Epithelial%2520Cells%252c%2520donor3.CNhs12123.11687-122I4.hg19.nobarcode.rdna.fa.gz
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|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Corneal%2520Epithelial%2520Cells%252c%2520donor3.CNhs12123.11687-122I4.hg38.nobarcode.ctss.bed.gz
|id=FF:11687-122I4
|is_a=EFO:0002091;;FF:0000043
|is_obsolete=
|library_id=CNhs12123
|library_id_phase_based=2:CNhs12123
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11687
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10015.GTGAAA.11687
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11687
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10015.GTGAAA.11687
|name=Corneal Epithelial Cells, donor3
|namespace=FANTOM5
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|rna_box=122
|rna_catalog_number=SC6515
|rna_concentration=1.25
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0
|rna_lot_number=
|rna_od260/230=
|rna_od260/280=
|rna_position=I4
|rna_rin=9.9
|rna_sample_type=total RNA
|rna_tube_id=122I4
|rna_weight_ug=10
|rnaseq_library_id=SRhi10015.GTGAAA
|sample_age=
|sample_category=primary cells
|sample_cell_catalog=lot:4545
|sample_cell_line=
|sample_cell_lot=N/A
|sample_cell_type=corneal epithelial cell
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=Sciencell/3H
|sample_description=
|sample_dev_stage=
|sample_disease=
|sample_donor(cell lot)=
|sample_ethnicity=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;6.5321712619554e-225!GO:0005737;cytoplasm;1.57690174173441e-196!GO:0043226;organelle;5.4406802827748e-177!GO:0043229;intracellular organelle;1.83323330465962e-176!GO:0043231;intracellular membrane-bound organelle;7.22576617794579e-161!GO:0043227;membrane-bound organelle;1.30474642492285e-160!GO:0044422;organelle part;5.69042945398183e-138!GO:0044446;intracellular organelle part;1.08131121221197e-136!GO:0044444;cytoplasmic part;4.46058425591149e-132!GO:0032991;macromolecular complex;4.13222882889857e-90!GO:0030529;ribonucleoprotein complex;1.26728007640974e-80!GO:0005739;mitochondrion;5.89052887621404e-78!GO:0044237;cellular metabolic process;1.39720980709957e-77!GO:0044238;primary metabolic process;1.34082882924995e-75!GO:0005515;protein binding;6.03807444749109e-66!GO:0043170;macromolecule metabolic process;4.65647796334767e-63!GO:0043233;organelle lumen;1.17362243236982e-61!GO:0031974;membrane-enclosed lumen;1.17362243236982e-61!GO:0005840;ribosome;2.14642336312565e-56!GO:0003723;RNA binding;7.30883133282243e-55!GO:0044428;nuclear part;3.85468418921186e-54!GO:0005634;nucleus;8.1752101539386e-54!GO:0044429;mitochondrial part;3.3971302056041e-52!GO:0006412;translation;2.31426018129544e-51!GO:0009058;biosynthetic process;1.07114384123521e-50!GO:0003735;structural constituent of ribosome;2.97369641122913e-50!GO:0044249;cellular biosynthetic process;4.21209231056566e-49!GO:0031090;organelle membrane;2.18879863793181e-48!GO:0019538;protein metabolic process;1.32107382359277e-46!GO:0043234;protein complex;1.35559207050697e-45!GO:0043228;non-membrane-bound organelle;2.04712007355157e-43!GO:0043232;intracellular non-membrane-bound organelle;2.04712007355157e-43!GO:0033279;ribosomal subunit;7.88866688085328e-43!GO:0016043;cellular component organization and biogenesis;1.8616508328159e-42!GO:0031967;organelle envelope;2.5885580305623e-41!GO:0031975;envelope;6.47033518719675e-41!GO:0044260;cellular macromolecule metabolic process;1.30894550372552e-40!GO:0044267;cellular protein metabolic process;1.39797252566467e-40!GO:0005829;cytosol;2.79342933818382e-40!GO:0009059;macromolecule biosynthetic process;6.75748455507865e-39!GO:0006396;RNA processing;5.07967484177538e-38!GO:0033036;macromolecule localization;6.79946175190903e-36!GO:0015031;protein transport;8.44048217096755e-36!GO:0005740;mitochondrial envelope;3.77227457883113e-34!GO:0008104;protein localization;2.10795385078689e-33!GO:0031981;nuclear lumen;2.94071473353493e-33!GO:0045184;establishment of protein localization;7.58585413186322e-33!GO:0065003;macromolecular complex assembly;8.20889653851683e-32!GO:0031966;mitochondrial membrane;1.14577239262555e-31!GO:0043283;biopolymer metabolic process;3.53115268237787e-31!GO:0006996;organelle organization and biogenesis;4.51330115048538e-31!GO:0005830;cytosolic ribosome (sensu Eukaryota);7.89202149973111e-31!GO:0019866;organelle inner membrane;1.08605856434765e-30!GO:0005743;mitochondrial inner membrane;4.5997271971922e-29!GO:0022607;cellular component assembly;3.15604312791939e-28!GO:0016071;mRNA metabolic process;3.88777594225375e-28!GO:0046907;intracellular transport;7.23346199882925e-28!GO:0010467;gene expression;3.16453837840177e-26!GO:0008380;RNA splicing;3.7619373962804e-26!GO:0006259;DNA metabolic process;8.88438481535643e-26!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.11210194283372e-25!GO:0044445;cytosolic part;2.89110713578391e-25!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.76575821194696e-25!GO:0006886;intracellular protein transport;2.43380793482985e-24!GO:0006397;mRNA processing;3.31967695972388e-24!GO:0015935;small ribosomal subunit;2.05838785299491e-22!GO:0031980;mitochondrial lumen;2.17322073274254e-22!GO:0005759;mitochondrial matrix;2.17322073274254e-22!GO:0007049;cell cycle;3.29323519149916e-22!GO:0006119;oxidative phosphorylation;8.40389633398897e-22!GO:0015934;large ribosomal subunit;1.48555610086064e-21!GO:0044455;mitochondrial membrane part;1.93861436233245e-21!GO:0005681;spliceosome;1.67184190336908e-19!GO:0005654;nucleoplasm;2.26183126263574e-19!GO:0048770;pigment granule;1.92182795799184e-18!GO:0042470;melanosome;1.92182795799184e-18!GO:0051641;cellular localization;4.6421271652379e-18!GO:0051649;establishment of cellular localization;7.90061266962758e-18!GO:0005746;mitochondrial respiratory chain;1.026845308345e-17!GO:0016874;ligase activity;1.38882240423994e-17!GO:0005783;endoplasmic reticulum;2.13965765463589e-17!GO:0000166;nucleotide binding;3.11627113154999e-17!GO:0022402;cell cycle process;3.51672618685306e-17!GO:0012505;endomembrane system;3.63854924594126e-17!GO:0051186;cofactor metabolic process;6.40870101210813e-17!GO:0006457;protein folding;2.21255384667004e-16!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.93589095029987e-16!GO:0044451;nucleoplasm part;3.8148149360166e-16!GO:0005730;nucleolus;4.2047707239879e-16!GO:0005761;mitochondrial ribosome;5.56586963202954e-16!GO:0000313;organellar ribosome;5.56586963202954e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;9.20359089745268e-16!GO:0050136;NADH dehydrogenase (quinone) activity;1.02954671672419e-15!GO:0003954;NADH dehydrogenase activity;1.02954671672419e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.02954671672419e-15!GO:0000278;mitotic cell cycle;1.49983199528425e-15!GO:0008134;transcription factor binding;2.8275265108242e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.6585426251721e-15!GO:0012501;programmed cell death;4.86950056365531e-15!GO:0006915;apoptosis;8.37132984813138e-15!GO:0016462;pyrophosphatase activity;9.54697694992042e-15!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;9.54697694992042e-15!GO:0016817;hydrolase activity, acting on acid anhydrides;1.11648452164648e-14!GO:0022618;protein-RNA complex assembly;1.56539925874553e-14!GO:0044432;endoplasmic reticulum part;2.31038339182976e-14!GO:0042775;organelle ATP synthesis coupled electron transport;5.69375668458917e-14!GO:0042773;ATP synthesis coupled electron transport;5.69375668458917e-14!GO:0006732;coenzyme metabolic process;7.17167730363487e-14!GO:0006605;protein targeting;7.54757278040533e-14!GO:0030964;NADH dehydrogenase complex (quinone);1.12725264782993e-13!GO:0045271;respiratory chain complex I;1.12725264782993e-13!GO:0005747;mitochondrial respiratory chain complex I;1.12725264782993e-13!GO:0006512;ubiquitin cycle;1.18351236237527e-13!GO:0017111;nucleoside-triphosphatase activity;1.29207929925888e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.30370412941468e-13!GO:0008219;cell death;1.55571143108855e-13!GO:0016265;death;1.55571143108855e-13!GO:0000502;proteasome complex (sensu Eukaryota);1.55571143108855e-13!GO:0044265;cellular macromolecule catabolic process;2.57231742010392e-13!GO:0044248;cellular catabolic process;3.09912864827471e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.69111850830292e-13!GO:0043412;biopolymer modification;6.13958808673391e-13!GO:0043285;biopolymer catabolic process;6.99855285475498e-13!GO:0006974;response to DNA damage stimulus;1.41100127263802e-12!GO:0017076;purine nucleotide binding;1.57395205482377e-12!GO:0009057;macromolecule catabolic process;1.85729956330859e-12!GO:0009055;electron carrier activity;1.94520901239702e-12!GO:0032553;ribonucleotide binding;2.45284463086922e-12!GO:0032555;purine ribonucleotide binding;2.45284463086922e-12!GO:0005694;chromosome;3.47831973836861e-12!GO:0051276;chromosome organization and biogenesis;4.12049846612506e-12!GO:0051082;unfolded protein binding;4.21716069297204e-12!GO:0044427;chromosomal part;4.29462328415911e-12!GO:0005794;Golgi apparatus;7.99619833958764e-12!GO:0051603;proteolysis involved in cellular protein catabolic process;8.20544526465449e-12!GO:0019941;modification-dependent protein catabolic process;1.10926330742425e-11!GO:0043632;modification-dependent macromolecule catabolic process;1.10926330742425e-11!GO:0006511;ubiquitin-dependent protein catabolic process;1.35008501486945e-11!GO:0006464;protein modification process;1.53026324711298e-11!GO:0042254;ribosome biogenesis and assembly;1.57893438730365e-11!GO:0044257;cellular protein catabolic process;1.61396998212351e-11!GO:0006325;establishment and/or maintenance of chromatin architecture;1.62351690020339e-11!GO:0008135;translation factor activity, nucleic acid binding;1.86812208190334e-11!GO:0022403;cell cycle phase;1.9239913632965e-11!GO:0005789;endoplasmic reticulum membrane;3.34075699411502e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;3.55211077745961e-11!GO:0000087;M phase of mitotic cell cycle;3.92210478710124e-11!GO:0007067;mitosis;3.92210478710124e-11!GO:0030554;adenyl nucleotide binding;4.89065048657494e-11!GO:0032559;adenyl ribonucleotide binding;5.67144014505054e-11!GO:0006399;tRNA metabolic process;5.81670174956008e-11!GO:0005524;ATP binding;5.8377913541756e-11!GO:0043067;regulation of programmed cell death;6.40012689301545e-11!GO:0042981;regulation of apoptosis;6.47286493243023e-11!GO:0006323;DNA packaging;7.81713332247459e-11!GO:0000074;regulation of progression through cell cycle;8.32744948447332e-11!GO:0051726;regulation of cell cycle;9.96954800645065e-11!GO:0051188;cofactor biosynthetic process;1.01411315786795e-10!GO:0000398;nuclear mRNA splicing, via spliceosome;1.20083137518799e-10!GO:0000375;RNA splicing, via transesterification reactions;1.20083137518799e-10!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.20083137518799e-10!GO:0043687;post-translational protein modification;1.22807263835173e-10!GO:0030163;protein catabolic process;1.39437943858657e-10!GO:0006461;protein complex assembly;1.74185405141765e-10!GO:0006281;DNA repair;5.06904758740307e-10!GO:0016491;oxidoreductase activity;6.91740412574184e-10!GO:0000785;chromatin;8.75644250575745e-10!GO:0048193;Golgi vesicle transport;9.89139330337531e-10!GO:0003676;nucleic acid binding;1.42633240752713e-09!GO:0003712;transcription cofactor activity;1.97197025901696e-09!GO:0009719;response to endogenous stimulus;2.14878407756206e-09!GO:0006163;purine nucleotide metabolic process;2.5462036062226e-09!GO:0006260;DNA replication;3.28316553461948e-09!GO:0009259;ribonucleotide metabolic process;3.69762167556993e-09!GO:0006413;translational initiation;3.69762167556993e-09!GO:0006913;nucleocytoplasmic transport;4.39378231629676e-09!GO:0006333;chromatin assembly or disassembly;4.58858209793244e-09!GO:0000279;M phase;5.47823322412861e-09!GO:0003743;translation initiation factor activity;5.72881023897337e-09!GO:0016192;vesicle-mediated transport;5.85200666587476e-09!GO:0048523;negative regulation of cellular process;6.44893713547818e-09!GO:0051169;nuclear transport;8.67106472570585e-09!GO:0009150;purine ribonucleotide metabolic process;9.03222333554729e-09!GO:0006164;purine nucleotide biosynthetic process;9.43899066794446e-09!GO:0065004;protein-DNA complex assembly;9.82279624745096e-09!GO:0051301;cell division;1.13241917638796e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.17417246861921e-08!GO:0030532;small nuclear ribonucleoprotein complex;1.18231096020804e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.18996754379735e-08!GO:0006446;regulation of translational initiation;1.20040384642478e-08!GO:0005635;nuclear envelope;1.35324914940114e-08!GO:0009056;catabolic process;1.49595615874091e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.82103805667514e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.82103805667514e-08!GO:0004812;aminoacyl-tRNA ligase activity;1.82103805667514e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.82103805667514e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.98742852153151e-08!GO:0009260;ribonucleotide biosynthetic process;2.12651503371178e-08!GO:0016070;RNA metabolic process;2.1871871320458e-08!GO:0009108;coenzyme biosynthetic process;2.27647551008993e-08!GO:0031497;chromatin assembly;2.33889295749833e-08!GO:0006334;nucleosome assembly;2.57284772086963e-08!GO:0007005;mitochondrion organization and biogenesis;2.64644121253638e-08!GO:0008639;small protein conjugating enzyme activity;3.15871964494786e-08!GO:0009152;purine ribonucleotide biosynthetic process;3.23248637759246e-08!GO:0017038;protein import;3.33407201103865e-08!GO:0016604;nuclear body;3.77494910228166e-08!GO:0009141;nucleoside triphosphate metabolic process;3.87931819681473e-08!GO:0006364;rRNA processing;4.15760919713353e-08!GO:0043038;amino acid activation;4.98763797424966e-08!GO:0006418;tRNA aminoacylation for protein translation;4.98763797424966e-08!GO:0043039;tRNA aminoacylation;4.98763797424966e-08!GO:0005768;endosome;5.05977097922628e-08!GO:0016072;rRNA metabolic process;5.60260234851734e-08!GO:0004842;ubiquitin-protein ligase activity;6.33603239497863e-08!GO:0048519;negative regulation of biological process;9.58496892097646e-08!GO:0009199;ribonucleoside triphosphate metabolic process;1.01659700064172e-07!GO:0016740;transferase activity;1.16988092075847e-07!GO:0031965;nuclear membrane;1.2554242161411e-07!GO:0009142;nucleoside triphosphate biosynthetic process;1.33256397203461e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.33256397203461e-07!GO:0006916;anti-apoptosis;1.50483576858714e-07!GO:0019787;small conjugating protein ligase activity;1.56203472180775e-07!GO:0044453;nuclear membrane part;1.60552874122237e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.07522276314187e-07!GO:0009144;purine nucleoside triphosphate metabolic process;2.07522276314187e-07!GO:0043069;negative regulation of programmed cell death;2.11540812809815e-07!GO:0008565;protein transporter activity;2.14785394306022e-07!GO:0015986;ATP synthesis coupled proton transport;2.15268251645933e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.15268251645933e-07!GO:0009060;aerobic respiration;2.26404662700705e-07!GO:0006366;transcription from RNA polymerase II promoter;2.41902791488959e-07!GO:0005793;ER-Golgi intermediate compartment;2.41902791488959e-07!GO:0009117;nucleotide metabolic process;2.72298094425506e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.75690121974984e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.75690121974984e-07!GO:0042623;ATPase activity, coupled;3.44430061313619e-07!GO:0043066;negative regulation of apoptosis;3.68532064019312e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;6.32356458310822e-07!GO:0015078;hydrogen ion transmembrane transporter activity;7.5751665460086e-07!GO:0016881;acid-amino acid ligase activity;8.04210697811877e-07!GO:0048475;coated membrane;9.59876175633375e-07!GO:0030117;membrane coat;9.59876175633375e-07!GO:0016887;ATPase activity;1.27820719946001e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.46376198139227e-06!GO:0045259;proton-transporting ATP synthase complex;1.48536599859484e-06!GO:0006091;generation of precursor metabolites and energy;1.62105452136189e-06!GO:0051246;regulation of protein metabolic process;1.97218496060081e-06!GO:0065002;intracellular protein transport across a membrane;1.97602245704936e-06!GO:0030120;vesicle coat;2.07399485436266e-06!GO:0030662;coated vesicle membrane;2.07399485436266e-06!GO:0045333;cellular respiration;2.12505817301194e-06!GO:0016779;nucleotidyltransferase activity;2.1812144417243e-06!GO:0007249;I-kappaB kinase/NF-kappaB cascade;2.192930811472e-06!GO:0046034;ATP metabolic process;2.24373078952013e-06!GO:0019829;cation-transporting ATPase activity;2.45534260136759e-06!GO:0006754;ATP biosynthetic process;2.63067355832032e-06!GO:0006753;nucleoside phosphate metabolic process;2.63067355832032e-06!GO:0003697;single-stranded DNA binding;2.86740541074463e-06!GO:0005762;mitochondrial large ribosomal subunit;3.72076664638937e-06!GO:0000315;organellar large ribosomal subunit;3.72076664638937e-06!GO:0005839;proteasome core complex (sensu Eukaryota);3.73171158852571e-06!GO:0016607;nuclear speck;4.44446274611087e-06!GO:0005643;nuclear pore;4.51579483548314e-06!GO:0043623;cellular protein complex assembly;4.83851623940002e-06!GO:0006752;group transfer coenzyme metabolic process;4.96104114737932e-06!GO:0016469;proton-transporting two-sector ATPase complex;7.12566508206708e-06!GO:0006793;phosphorus metabolic process;8.0625632434205e-06!GO:0006796;phosphate metabolic process;8.0625632434205e-06!GO:0006099;tricarboxylic acid cycle;9.09976679219905e-06!GO:0046356;acetyl-CoA catabolic process;9.09976679219905e-06!GO:0015630;microtubule cytoskeleton;1.02887147287413e-05!GO:0016787;hydrolase activity;1.10245376131414e-05!GO:0032446;protein modification by small protein conjugation;1.13489464591459e-05!GO:0042802;identical protein binding;1.14766201421299e-05!GO:0016567;protein ubiquitination;1.15209307464088e-05!GO:0016568;chromatin modification;1.29981177820206e-05!GO:0045786;negative regulation of progression through cell cycle;1.37018453072814e-05!GO:0003924;GTPase activity;1.37018453072814e-05!GO:0008654;phospholipid biosynthetic process;1.59317827090451e-05!GO:0006084;acetyl-CoA metabolic process;1.67754769601365e-05!GO:0005773;vacuole;2.02529418458245e-05!GO:0004386;helicase activity;2.0628037049811e-05!GO:0044431;Golgi apparatus part;2.28533457527634e-05!GO:0008610;lipid biosynthetic process;2.3140852854833e-05!GO:0004298;threonine endopeptidase activity;2.34435141454608e-05!GO:0048522;positive regulation of cellular process;3.06190845067031e-05!GO:0000786;nucleosome;3.25458549611896e-05!GO:0051329;interphase of mitotic cell cycle;3.44642733191612e-05!GO:0009109;coenzyme catabolic process;3.56837984701483e-05!GO:0003899;DNA-directed RNA polymerase activity;3.5941210976622e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;3.70469479825559e-05!GO:0006082;organic acid metabolic process;3.92044186361606e-05!GO:0000314;organellar small ribosomal subunit;4.02444479231983e-05!GO:0005763;mitochondrial small ribosomal subunit;4.02444479231983e-05!GO:0000245;spliceosome assembly;4.08834813787112e-05!GO:0006888;ER to Golgi vesicle-mediated transport;4.27864320784721e-05!GO:0019752;carboxylic acid metabolic process;4.39705118242806e-05!GO:0031252;leading edge;4.43835578789298e-05!GO:0003714;transcription corepressor activity;4.48473386942245e-05!GO:0016564;transcription repressor activity;4.7259106183344e-05!GO:0051427;hormone receptor binding;4.93125934516509e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;5.4100206317297e-05!GO:0016126;sterol biosynthetic process;5.85622865720586e-05!GO:0051170;nuclear import;5.92919601015333e-05!GO:0016310;phosphorylation;5.97249077720246e-05!GO:0046930;pore complex;6.1506021818325e-05!GO:0005770;late endosome;6.18175711322458e-05!GO:0008026;ATP-dependent helicase activity;6.24331735979022e-05!GO:0044440;endosomal part;6.34241732204389e-05!GO:0010008;endosome membrane;6.34241732204389e-05!GO:0051187;cofactor catabolic process;6.39816213728624e-05!GO:0030176;integral to endoplasmic reticulum membrane;6.79768596059744e-05!GO:0031324;negative regulation of cellular metabolic process;7.16365364299953e-05!GO:0043566;structure-specific DNA binding;8.28181238558738e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;8.5736417540439e-05!GO:0019843;rRNA binding;8.88880908039462e-05!GO:0051325;interphase;9.53360918689449e-05!GO:0045454;cell redox homeostasis;9.65103433278639e-05!GO:0006606;protein import into nucleus;9.86978357085684e-05!GO:0035257;nuclear hormone receptor binding;0.000100117575510046!GO:0000323;lytic vacuole;0.000102781829078837!GO:0005764;lysosome;0.000102781829078837!GO:0050657;nucleic acid transport;0.000123087509312011!GO:0051236;establishment of RNA localization;0.000123087509312011!GO:0050658;RNA transport;0.000123087509312011!GO:0006403;RNA localization;0.00013018712632353!GO:0005819;spindle;0.000131177179700736!GO:0016023;cytoplasmic membrane-bound vesicle;0.000137347979886302!GO:0005667;transcription factor complex;0.000171236423128968!GO:0005813;centrosome;0.000190944469605161!GO:0031988;membrane-bound vesicle;0.000197495925465313!GO:0003713;transcription coactivator activity;0.000205649790767651!GO:0065009;regulation of a molecular function;0.000211188432242307!GO:0009967;positive regulation of signal transduction;0.000220907336560505!GO:0043681;protein import into mitochondrion;0.000222110564528882!GO:0008033;tRNA processing;0.000231684512253152!GO:0043065;positive regulation of apoptosis;0.000231795636170595!GO:0016853;isomerase activity;0.000233757192246814!GO:0006626;protein targeting to mitochondrion;0.000239959528140711!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000249922122295081!GO:0006520;amino acid metabolic process;0.00025666856451757!GO:0043068;positive regulation of programmed cell death;0.00028136535299632!GO:0005788;endoplasmic reticulum lumen;0.000296632008003651!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000297199487063486!GO:0030118;clathrin coat;0.000340443319343056!GO:0048468;cell development;0.00034300151678073!GO:0005798;Golgi-associated vesicle;0.000346344256978239!GO:0048471;perinuclear region of cytoplasm;0.0003779047470302!GO:0050794;regulation of cellular process;0.000382333760121522!GO:0005905;coated pit;0.000388840740125259!GO:0006979;response to oxidative stress;0.000423020887548563!GO:0050662;coenzyme binding;0.000448640901530663!GO:0007006;mitochondrial membrane organization and biogenesis;0.000448640901530663!GO:0005769;early endosome;0.000458164079583888!GO:0030119;AP-type membrane coat adaptor complex;0.000489834943075746!GO:0030132;clathrin coat of coated pit;0.000490099928921574!GO:0009892;negative regulation of metabolic process;0.000500089788209591!GO:0016044;membrane organization and biogenesis;0.000506262358630296!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000507072450885056!GO:0009165;nucleotide biosynthetic process;0.00050913294678064!GO:0046474;glycerophospholipid biosynthetic process;0.00051212457939393!GO:0000139;Golgi membrane;0.000517315083989118!GO:0033116;ER-Golgi intermediate compartment membrane;0.000518726565250339!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000536132853877386!GO:0006695;cholesterol biosynthetic process;0.000562074560671463!GO:0007010;cytoskeleton organization and biogenesis;0.000648343035277821!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000650325434226925!GO:0006839;mitochondrial transport;0.000667682163966911!GO:0016481;negative regulation of transcription;0.000669175884267304!GO:0048037;cofactor binding;0.000672462128549614!GO:0005815;microtubule organizing center;0.000681863007808662!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000721152109289198!GO:0016563;transcription activator activity;0.000743850211914582!GO:0005525;GTP binding;0.000771981282204354!GO:0008632;apoptotic program;0.00080686140078613!GO:0048518;positive regulation of biological process;0.000813675873310738!GO:0005856;cytoskeleton;0.000832166244839846!GO:0030131;clathrin adaptor complex;0.000844254108166132!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.000850426176797669!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000852483272868781!GO:0016859;cis-trans isomerase activity;0.000863895768766359!GO:0031968;organelle outer membrane;0.000907393985185548!GO:0007243;protein kinase cascade;0.000910714143784568!GO:0019867;outer membrane;0.000944179175035288!GO:0043021;ribonucleoprotein binding;0.000955721268680488!GO:0006613;cotranslational protein targeting to membrane;0.000999922255199115!GO:0005741;mitochondrial outer membrane;0.0010478060539998!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00117847668596927!GO:0051168;nuclear export;0.001217100952657!GO:0000151;ubiquitin ligase complex;0.00122265092360166!GO:0008250;oligosaccharyl transferase complex;0.00128361286515028!GO:0051920;peroxiredoxin activity;0.00134139419371105!GO:0007264;small GTPase mediated signal transduction;0.00136192142402299!GO:0007088;regulation of mitosis;0.00141569199760753!GO:0005885;Arp2/3 protein complex;0.00145716778081915!GO:0031982;vesicle;0.00146192004760648!GO:0019899;enzyme binding;0.00148661837836654!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00150473636496447!GO:0043488;regulation of mRNA stability;0.00150473636496447!GO:0043487;regulation of RNA stability;0.00150473636496447!GO:0015980;energy derivation by oxidation of organic compounds;0.00150826671382135!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00156801382792515!GO:0031410;cytoplasmic vesicle;0.00169591173721354!GO:0003724;RNA helicase activity;0.00170561709900593!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00170764571115471!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00170764571115471!GO:0030867;rough endoplasmic reticulum membrane;0.00177344390069118!GO:0051028;mRNA transport;0.0018255404516661!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00183707197797021!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00183707197797021!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00183707197797021!GO:0030031;cell projection biogenesis;0.00186256215134067!GO:0001726;ruffle;0.0019546630367792!GO:0046489;phosphoinositide biosynthetic process;0.00202484715054183!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00231097247609423!GO:0006118;electron transport;0.0024239782811148!GO:0005684;U2-dependent spliceosome;0.00258487138672138!GO:0006414;translational elongation;0.00274405637883735!GO:0007051;spindle organization and biogenesis;0.00279128481195426!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00285436229264853!GO:0005657;replication fork;0.00285548636969822!GO:0015631;tubulin binding;0.00288547892014777!GO:0051252;regulation of RNA metabolic process;0.00304697045158353!GO:0003729;mRNA binding;0.00309928758957002!GO:0006917;induction of apoptosis;0.00311476077796832!GO:0008637;apoptotic mitochondrial changes;0.00336692035086867!GO:0008652;amino acid biosynthetic process;0.00351484508546224!GO:0008361;regulation of cell size;0.00362806952780685!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00362806952780685!GO:0015002;heme-copper terminal oxidase activity;0.00362806952780685!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00362806952780685!GO:0004129;cytochrome-c oxidase activity;0.00362806952780685!GO:0030036;actin cytoskeleton organization and biogenesis;0.00363035273976679!GO:0016049;cell growth;0.00365551230929752!GO:0008629;induction of apoptosis by intracellular signals;0.00366530555529567!GO:0051789;response to protein stimulus;0.00367026761062891!GO:0006986;response to unfolded protein;0.00367026761062891!GO:0006261;DNA-dependent DNA replication;0.00372423435082557!GO:0008094;DNA-dependent ATPase activity;0.00377787403819707!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00379687073205747!GO:0046467;membrane lipid biosynthetic process;0.00383259122115565!GO:0000049;tRNA binding;0.00405667389043732!GO:0018196;peptidyl-asparagine modification;0.00411062668500128!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00411062668500128!GO:0005048;signal sequence binding;0.00412576195362644!GO:0006612;protein targeting to membrane;0.00416513806958416!GO:0012502;induction of programmed cell death;0.00422033800498841!GO:0044452;nucleolar part;0.00456643421153278!GO:0006401;RNA catabolic process;0.00466485845479494!GO:0006650;glycerophospholipid metabolic process;0.00466485845479494!GO:0030125;clathrin vesicle coat;0.00466485845479494!GO:0030665;clathrin coated vesicle membrane;0.00466485845479494!GO:0005791;rough endoplasmic reticulum;0.0047070741324524!GO:0006402;mRNA catabolic process;0.00511565960415504!GO:0004576;oligosaccharyl transferase activity;0.00526822458243014!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00529482758196246!GO:0006730;one-carbon compound metabolic process;0.00582768383664314!GO:0030880;RNA polymerase complex;0.00584901854626727!GO:0046483;heterocycle metabolic process;0.00586574386763288!GO:0006289;nucleotide-excision repair;0.00595614242864562!GO:0003684;damaged DNA binding;0.00601383708785317!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00632417033683102!GO:0006595;polyamine metabolic process;0.00636767947193731!GO:0008092;cytoskeletal protein binding;0.00639980014755854!GO:0006519;amino acid and derivative metabolic process;0.00659715018148035!GO:0032561;guanyl ribonucleotide binding;0.00672497944868506!GO:0019001;guanyl nucleotide binding;0.00672497944868506!GO:0016272;prefoldin complex;0.00726414472296825!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.00729974113955043!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00731446396953424!GO:0051287;NAD binding;0.00741992854500085!GO:0017166;vinculin binding;0.00759635098369071!GO:0000075;cell cycle checkpoint;0.00762204131889312!GO:0030658;transport vesicle membrane;0.00777766721604604!GO:0050790;regulation of catalytic activity;0.00788921842065895!GO:0006818;hydrogen transport;0.00824834138952489!GO:0007398;ectoderm development;0.00834352855192058!GO:0008186;RNA-dependent ATPase activity;0.00846349637505728!GO:0015992;proton transport;0.00873292846300999!GO:0005874;microtubule;0.00876920608411099!GO:0016125;sterol metabolic process;0.00881889169112524!GO:0001836;release of cytochrome c from mitochondria;0.00882499150054331!GO:0044255;cellular lipid metabolic process;0.00894546618714296!GO:0006779;porphyrin biosynthetic process;0.00902981773570684!GO:0033014;tetrapyrrole biosynthetic process;0.00902981773570684!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00909365160837864!GO:0048487;beta-tubulin binding;0.00909365160837864!GO:0009116;nucleoside metabolic process;0.00939512942409605!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00950425339181563!GO:0043284;biopolymer biosynthetic process;0.00962160427909406!GO:0030133;transport vesicle;0.00978647753570701!GO:0001558;regulation of cell growth;0.00989924285729606!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00991857619547861!GO:0000775;chromosome, pericentric region;0.0100220894514576!GO:0030384;phosphoinositide metabolic process;0.0101152236524139!GO:0035258;steroid hormone receptor binding;0.0104543574055199!GO:0022890;inorganic cation transmembrane transporter activity;0.0110599253894655!GO:0008243;plasminogen activator activity;0.0110599253894655!GO:0045941;positive regulation of transcription;0.0110599253894655!GO:0030216;keratinocyte differentiation;0.0110933967046668!GO:0006383;transcription from RNA polymerase III promoter;0.0113805858977858!GO:0000096;sulfur amino acid metabolic process;0.0114172173933151!GO:0044262;cellular carbohydrate metabolic process;0.0116039024507294!GO:0006506;GPI anchor biosynthetic process;0.0116586768001707!GO:0004674;protein serine/threonine kinase activity;0.0116975259115313!GO:0051098;regulation of binding;0.0117732366813758!GO:0030029;actin filament-based process;0.0118522597178385!GO:0007050;cell cycle arrest;0.0119051583660463!GO:0004518;nuclease activity;0.0121072572145908!GO:0006778;porphyrin metabolic process;0.0121250255436924!GO:0033013;tetrapyrrole metabolic process;0.0121250255436924!GO:0000082;G1/S transition of mitotic cell cycle;0.0122398443726339!GO:0006950;response to stress;0.0122460944470143!GO:0045334;clathrin-coated endocytic vesicle;0.0123614888796392!GO:0032508;DNA duplex unwinding;0.0123614888796392!GO:0032392;DNA geometric change;0.0123614888796392!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0123857393807775!GO:0000428;DNA-directed RNA polymerase complex;0.0123857393807775!GO:0046822;regulation of nucleocytoplasmic transport;0.0123876011018338!GO:0031902;late endosome membrane;0.0124917166071903!GO:0006509;membrane protein ectodomain proteolysis;0.0125225340013564!GO:0033619;membrane protein proteolysis;0.0125225340013564!GO:0030057;desmosome;0.0126117269779614!GO:0051540;metal cluster binding;0.0126913824531902!GO:0051536;iron-sulfur cluster binding;0.0126913824531902!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0126913824531902!GO:0015399;primary active transmembrane transporter activity;0.0126913824531902!GO:0043154;negative regulation of caspase activity;0.0131079060124842!GO:0045893;positive regulation of transcription, DNA-dependent;0.0131217139041807!GO:0051087;chaperone binding;0.0131786888069181!GO:0031072;heat shock protein binding;0.0132846713708392!GO:0008139;nuclear localization sequence binding;0.0141152742682266!GO:0006611;protein export from nucleus;0.0141152742682266!GO:0045892;negative regulation of transcription, DNA-dependent;0.0142566458236264!GO:0003711;transcription elongation regulator activity;0.0145993679818766!GO:0030660;Golgi-associated vesicle membrane;0.0145993679818766!GO:0030659;cytoplasmic vesicle membrane;0.0146685851343107!GO:0006505;GPI anchor metabolic process;0.0148742288827149!GO:0001533;cornified envelope;0.0150809093831889!GO:0030137;COPI-coated vesicle;0.0153036766612434!GO:0005774;vacuolar membrane;0.0153725525121932!GO:0006733;oxidoreduction coenzyme metabolic process;0.0153734010760719!GO:0005758;mitochondrial intermembrane space;0.0155392335022997!GO:0006749;glutathione metabolic process;0.0155956043623774!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0157276280885849!GO:0031301;integral to organelle membrane;0.0159159702461243!GO:0005637;nuclear inner membrane;0.0160881962620632!GO:0043414;biopolymer methylation;0.016122215415095!GO:0030663;COPI coated vesicle membrane;0.0166144760027992!GO:0030126;COPI vesicle coat;0.0166144760027992!GO:0031529;ruffle organization and biogenesis;0.0167324766627269!GO:0004004;ATP-dependent RNA helicase activity;0.0167422194603108!GO:0030145;manganese ion binding;0.0168466673484265!GO:0005869;dynactin complex;0.0169938290295212!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0170985501725657!GO:0030128;clathrin coat of endocytic vesicle;0.0173715545322038!GO:0030669;clathrin-coated endocytic vesicle membrane;0.0173715545322038!GO:0030122;AP-2 adaptor complex;0.0173715545322038!GO:0006268;DNA unwinding during replication;0.0173967525362073!GO:0051101;regulation of DNA binding;0.0179604707805489!GO:0030503;regulation of cell redox homeostasis;0.0182658943287904!GO:0045926;negative regulation of growth;0.0184327587323992!GO:0006354;RNA elongation;0.0187980875909073!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0192170173762626!GO:0006458;'de novo' protein folding;0.0192208267268249!GO:0051084;'de novo' posttranslational protein folding;0.0192208267268249!GO:0005149;interleukin-1 receptor binding;0.0192208267268249!GO:0008544;epidermis development;0.0193107867261557!GO:0003678;DNA helicase activity;0.0193194445976986!GO:0006807;nitrogen compound metabolic process;0.0194178900400425!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0194712853871664!GO:0006643;membrane lipid metabolic process;0.0195631338734828!GO:0016197;endosome transport;0.0200090473557544!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0200470064365948!GO:0000059;protein import into nucleus, docking;0.0203315823554299!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0204972299221622!GO:0045792;negative regulation of cell size;0.0207341152080191!GO:0030308;negative regulation of cell growth;0.0209709788409206!GO:0006284;base-excision repair;0.02110747790716!GO:0006497;protein amino acid lipidation;0.021433593612511!GO:0048500;signal recognition particle;0.0216766477070675!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0221662373123585!GO:0010257;NADH dehydrogenase complex assembly;0.0221662373123585!GO:0033108;mitochondrial respiratory chain complex assembly;0.0221662373123585!GO:0008538;proteasome activator activity;0.0224980508744087!GO:0006891;intra-Golgi vesicle-mediated transport;0.0224980508744087!GO:0006767;water-soluble vitamin metabolic process;0.0228894727534289!GO:0031970;organelle envelope lumen;0.0229174336477853!GO:0006405;RNA export from nucleus;0.023032053482823!GO:0007346;regulation of progression through mitotic cell cycle;0.0230825531480728!GO:0016741;transferase activity, transferring one-carbon groups;0.0231633936597679!GO:0006644;phospholipid metabolic process;0.0234025066295968!GO:0004527;exonuclease activity;0.0237400774576808!GO:0009303;rRNA transcription;0.0238754209605914!GO:0044433;cytoplasmic vesicle part;0.0241366704731528!GO:0035035;histone acetyltransferase binding;0.0244993508013241!GO:0050789;regulation of biological process;0.0255500976709745!GO:0004029;aldehyde dehydrogenase (NAD) activity;0.0255676746335019!GO:0030027;lamellipodium;0.0256562912911309!GO:0008168;methyltransferase activity;0.025763026612329!GO:0006066;alcohol metabolic process;0.0258350219581717!GO:0040029;regulation of gene expression, epigenetic;0.0258568692611444!GO:0009112;nucleobase metabolic process;0.025914917905325!GO:0016620;oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor;0.0264316230340547!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.0265713050837291!GO:0008022;protein C-terminus binding;0.0267888071613054!GO:0043022;ribosome binding;0.0276207830852494!GO:0006740;NADPH regeneration;0.0276207830852494!GO:0006098;pentose-phosphate shunt;0.0276207830852494!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0276207830852494!GO:0006783;heme biosynthetic process;0.0276207830852494!GO:0050178;phenylpyruvate tautomerase activity;0.0276207830852494!GO:0016363;nuclear matrix;0.0282168131789608!GO:0000792;heterochromatin;0.0283339955895862!GO:0051348;negative regulation of transferase activity;0.0291926119895454!GO:0003690;double-stranded DNA binding;0.0300506929858679!GO:0033673;negative regulation of kinase activity;0.0301218516527193!GO:0006469;negative regulation of protein kinase activity;0.0301218516527193!GO:0005832;chaperonin-containing T-complex;0.0306056089054494!GO:0046983;protein dimerization activity;0.0308041769250955!GO:0003682;chromatin binding;0.0310253766794341!GO:0009119;ribonucleoside metabolic process;0.0310310393621518!GO:0008283;cell proliferation;0.0313697913584132!GO:0046966;thyroid hormone receptor binding;0.0314704083139277!GO:0051539;4 iron, 4 sulfur cluster binding;0.0316583530137456!GO:0003746;translation elongation factor activity;0.0320039410183071!GO:0044437;vacuolar part;0.0321773539176893!GO:0009166;nucleotide catabolic process;0.0321773539176893!GO:0042158;lipoprotein biosynthetic process;0.0325137689319288!GO:0009308;amine metabolic process;0.0331953452894418!GO:0040008;regulation of growth;0.0334617802726815!GO:0008213;protein amino acid alkylation;0.0334617802726815!GO:0006479;protein amino acid methylation;0.0334617802726815!GO:0004680;casein kinase activity;0.0336722273903335!GO:0000086;G2/M transition of mitotic cell cycle;0.0337171979468998!GO:0005862;muscle thin filament tropomyosin;0.0337171979468998!GO:0030508;thiol-disulfide exchange intermediate activity;0.034487387729572!GO:0031272;regulation of pseudopodium formation;0.0347177742686324!GO:0031269;pseudopodium formation;0.0347177742686324!GO:0031344;regulation of cell projection organization and biogenesis;0.0347177742686324!GO:0031268;pseudopodium organization and biogenesis;0.0347177742686324!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0347177742686324!GO:0031274;positive regulation of pseudopodium formation;0.0347177742686324!GO:0000209;protein polyubiquitination;0.0351277670411677!GO:0042168;heme metabolic process;0.0353938448552282!GO:0051085;chaperone cofactor-dependent protein folding;0.0358245149187906!GO:0008426;protein kinase C inhibitor activity;0.0363021291978424!GO:0016835;carbon-oxygen lyase activity;0.0364762941306638!GO:0006007;glucose catabolic process;0.0364845020423647!GO:0032259;methylation;0.0371004532496318!GO:0051338;regulation of transferase activity;0.0371004532496318!GO:0008312;7S RNA binding;0.03740499191876!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.03740499191876!GO:0030833;regulation of actin filament polymerization;0.0374701579453606!GO:0016903;oxidoreductase activity, acting on the aldehyde or oxo group of donors;0.0375798727893748!GO:0016407;acetyltransferase activity;0.0375798727893748!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0375906227040274!GO:0006352;transcription initiation;0.0378727749931884!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0379434756730013!GO:0045039;protein import into mitochondrial inner membrane;0.0379434756730013!GO:0007021;tubulin folding;0.0402559989621717!GO:0008287;protein serine/threonine phosphatase complex;0.0407524076688092!GO:0043189;H4/H2A histone acetyltransferase complex;0.0409914593621035!GO:0030911;TPR domain binding;0.0410349554743684!GO:0005765;lysosomal membrane;0.0413129308234506!GO:0000123;histone acetyltransferase complex;0.0422818987967323!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0433591098594184!GO:0030433;ER-associated protein catabolic process;0.0439458063475991!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0439458063475991!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0444997588487052!GO:0046128;purine ribonucleoside metabolic process;0.0449487657518903!GO:0042278;purine nucleoside metabolic process;0.0449487657518903!GO:0030521;androgen receptor signaling pathway;0.0457961211577909!GO:0006144;purine base metabolic process;0.0461968596672957!GO:0030032;lamellipodium biogenesis;0.0474573923628432!GO:0006417;regulation of translation;0.0475758988007408!GO:0009451;RNA modification;0.0476987060222302!GO:0006629;lipid metabolic process;0.0477216484626576!GO:0046870;cadmium ion binding;0.0479612046650484!GO:0009124;nucleoside monophosphate biosynthetic process;0.0479612046650484!GO:0009123;nucleoside monophosphate metabolic process;0.0479612046650484!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.0483063834567135!GO:0045806;negative regulation of endocytosis;0.0483063834567135!GO:0007265;Ras protein signal transduction;0.0483063834567135!GO:0048144;fibroblast proliferation;0.0490123483846799!GO:0048145;regulation of fibroblast proliferation;0.0490123483846799!GO:0003756;protein disulfide isomerase activity;0.0493943329059781!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0493943329059781!GO:0019206;nucleoside kinase activity;0.049637447544248!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0496465608384845!GO:0045047;protein targeting to ER;0.0496465608384845!GO:0006633;fatty acid biosynthetic process;0.0498510966575981
|sample_id=11687
|sample_note=
|sample_sex=
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=eye
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|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11687-122I4;search_select_hide=table117:FF:11687-122I4
}}
}}

Latest revision as of 18:14, 4 June 2020

Name:Corneal Epithelial Cells, donor3
Species:Human (Homo sapiens)
Library ID:CNhs12123
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueeye
dev stageNA
sexNA
ageNA
cell typecorneal epithelial cell
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberSC6515
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005608
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12123 CAGE DRX008211 DRR009083
Accession ID Hg19

Library idBAMCTSS
CNhs12123 DRZ000508 DRZ001893
Accession ID Hg38

Library idBAMCTSS
CNhs12123 DRZ011858 DRZ013243
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005608
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10015.GTGAAA sRNA-Seq DRX037261 DRR041627
Accession ID Hg19

Library idBAMCTSS
SRhi10015.GTGAAA DRZ007269


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.0728
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.0318
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.072
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.0277
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.405
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.192
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte1.21
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.368
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal1.257
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.535
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0.241
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.503
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.147
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12123

Jaspar motifP-value
MA0002.20.961
MA0003.10.443
MA0004.10.922
MA0006.10.242
MA0007.10.416
MA0009.10.184
MA0014.10.64
MA0017.10.0434
MA0018.20.0222
MA0019.10.76
MA0024.10.82
MA0025.10.783
MA0027.10.914
MA0028.10.391
MA0029.10.438
MA0030.10.143
MA0031.10.0392
MA0035.20.116
MA0038.10.576
MA0039.20.011
MA0040.10.242
MA0041.10.284
MA0042.10.82
MA0043.10.0319
MA0046.10.556
MA0047.20.722
MA0048.10.906
MA0050.11.63396e-8
MA0051.15.03483e-5
MA0052.10.949
MA0055.10.141
MA0057.10.00199
MA0058.10.524
MA0059.10.616
MA0060.10.125
MA0061.10.89
MA0062.20.0568
MA0065.20.00289
MA0066.10.0506
MA0067.10.0476
MA0068.10.013
MA0069.10.602
MA0070.10.368
MA0071.10.513
MA0072.10.958
MA0073.10.942
MA0074.10.415
MA0076.10.103
MA0077.10.261
MA0078.10.946
MA0079.20.388
MA0080.21.23991e-6
MA0081.10.047
MA0083.10.168
MA0084.10.0185
MA0087.10.441
MA0088.10.566
MA0090.10.0832
MA0091.10.814
MA0092.10.53
MA0093.10.772
MA0099.29.73211e-6
MA0100.10.158
MA0101.10.329
MA0102.20.0563
MA0103.12.01667e-6
MA0104.20.918
MA0105.10.554
MA0106.13.67716e-7
MA0107.10.335
MA0108.20.0128
MA0111.10.696
MA0112.20.0174
MA0113.10.556
MA0114.10.0414
MA0115.10.528
MA0116.10.0758
MA0117.10.774
MA0119.10.13
MA0122.10.631
MA0124.10.496
MA0125.10.248
MA0131.10.38
MA0135.10.0145
MA0136.12.68889e-4
MA0137.20.00537
MA0138.20.0249
MA0139.10.363
MA0140.10.998
MA0141.10.112
MA0142.10.116
MA0143.10.457
MA0144.10.443
MA0145.10.0673
MA0146.10.0431
MA0147.10.739
MA0148.10.678
MA0149.10.0371
MA0150.10.742
MA0152.10.0895
MA0153.10.662
MA0154.10.131
MA0155.10.292
MA0156.10.00246
MA0157.10.0679
MA0159.10.174
MA0160.10.323
MA0162.10.13
MA0163.10.156
MA0164.10.988
MA0258.10.123
MA0259.10.935



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12123

Novel motifP-value
10.275
100.882
1000.595
1010.171
1020.251
1030.127
1040.768
1050.0466
1060.0377
1070.0223
1080.374
1090.00232
110.125
1100.127
1110.31
1120.262
1130.319
1140.431
1150.0725
1160.275
1170.385
1180.774
1190.0676
120.619
1200.0396
1210.353
1220.0551
1230.916
1240.419
1250.464
1260.312
1270.11
1280.194
1290.0198
130.0339
1300.611
1310.664
1320.138
1330.0693
1340.628
1350.897
1360.232
1370.207
1380.705
1390.616
140.687
1400.324
1410.451
1420.0547
1430.565
1440.241
1450.177
1460.0318
1470.207
1480.406
1490.527
150.695
1500.364
1510.281
1520.0688
1530.806
1540.734
1550.485
1560.22
1570.45
1580.34
1590.56
160.0487
1600.045
1610.226
1620.234
1630.798
1640.724
1650.642
1660.587
1670.658
1680.735
1690.0407
170.102
180.227
190.394
20.109
200.79
210.495
220.166
230.448
240.0909
250.886
260.0757
270.329
280.898
290.316
30.471
300.129
310.576
320.377
330.251
340.569
350.709
360.778
370.325
380.267
390.168
40.31
400.0106
410.691
420.512
430.337
440.101
450.159
460.228
470.177
480.083
490.432
50.827
500.463
510.537
520.435
530.973
540.571
550.575
560.352
570.256
580.745
590.0436
60.349
600.205
610.542
620.772
630.179
640.177
650.103
660.368
670.717
680.619
690.0488
70.337
700.0273
710.192
720.707
730.0461
740.0544
750.279
760.622
770.0161
780.103
790.628
80.113
800.806
810.843
820.528
830.961
840.523
850.355
860.88
870.0738
880.435
890.0358
90.588
900.109
910.301
920.689
930.811
940.826
950.067
960.864
970.974
980.262
990.00772



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12123


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000076 (squamous epithelial cell)
0002159 (general ecto-epithelial cell)
0000255 (eukaryotic cell)
0002077 (ecto-epithelial cell)
0000575 (corneal epithelial cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000970 (eye)
0000019 (camera-type eye)
0000033 (head)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0000047 (simple eye)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0001444 (subdivision of head)
0000477 (anatomical cluster)
0000467 (anatomical system)
0010313 (neural crest-derived structure)
0001062 (anatomical entity)
0000480 (anatomical group)
0003102 (surface structure)
0000020 (sense organ)
0001032 (sensory system)
0010317 (germ layer / neural crest derived structure)
0000964 (cornea)
0004088 (ocular region)
0000153 (anterior region of body)
0007811 (craniocervical region)
0002104 (visual system)
0001801 (anterior segment of eyeball)
0010409 (eye surface)
0004456 (entire sense organ system)
0001456 (face)
0010230 (eyeball of camera-type eye)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000043 (human corneal epithelial cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000221 (ectodermal cell)

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