FF:10085-102B4: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{f5samples
|id=FF:10085-102B4
|name=brain, fetal, pool1
|sample_id=10085
|rna_tube_id=102B4
|rna_box=102
|rna_position=B4
|sample_cell_lot=NA
|sample_cell_catalog=NA
...") |
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{{f5samples | {{f5samples | ||
| | |DRA_sample_Accession=CAGE@SAMD00004937 | ||
| | |accession_numbers=CAGE;DRX008627;DRR009499;DRZ000924;DRZ002309;DRZ012274;DRZ013659 | ||
| | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000955,UBERON:0000479,UBERON:0004121,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0001017,UBERON:0001016 | ||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
| | |ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0010085,FF:0000999,FF:0000004 | ||
|comment= | |||
|created_by= | |||
|creation_date= | |||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |||
|expression_enrichment_score=chr17:37764128..37764258,-!p1@NEUROD2!2.32!205.60!NEUROD2;;chr14:29235961..29236008,+!p1@FOXG1!2.31!201.61!FOXG1;;chr21:34442439..34442455,+!p1@OLIG1!2.27!183.64!OLIG1;;chr1:244214577..244214593,+!p1@ZNF238!2.24!173.66!ZNF238;;chrX:25034067..25034088,-!p1@ARX!2.24!171.67!ARX;;chr2:5832508..5832524,+!p1@SOX11!2.16!143.72!SOX11;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!2.06!113.78!POU3F3;;chr2:162272785..162272836,+!p1@TBR1!2.06!113.78!TBR1;;chr7:100065686..100065701,-!p2@TSC22D4!2.03!105.80!TSC22D4;;chr7:31380292..31380351,-!p1@NEUROD6!2.02!103.80!NEUROD6;;chr1:2461692..2461710,-!p1@HES5!2.00!99.81!HES5;;chr9:126773880..126773895,+!p2@LHX2!1.99!97.81!LHX2;;chr4:81118647..81118666,+!p1@PRDM8!1.95!113.78!PRDM8;;chr5:88178983..88179012,-!p1@MEF2C!1.92!602.83!MEF2C;;chr21:34398234..34398250,+!p1@OLIG2!1.90!77.85!OLIG2;;chr2:2334997..2335053,-!p1@MYT1L!1.90!77.85!MYT1L;;chr9:126774018..126774055,+!p1@LHX2!1.86!71.86!LHX2;;chr14:29234581..29234601,+!p2@FOXG1!1.85!69.86!FOXG1;;chr19:38720294..38720348,-!p1@DPF1!1.82!79.85!DPF1;;chr3:181429704..181429722,+!p1@SOX2!1.81!63.88!SOX2;;chr12:103351444..103351461,+!p1@ASCL1!1.81!63.88!ASCL1;;chr2:200322229..200322251,-!p3@SATB2!1.80!61.88!SATB2;;chr19:13134772..13134822,+!p2@NFIX!1.77!83.84!NFIX;;chr1:151032922..151032951,+!p2@MLLT11!1.76!91.82!MLLT11;;chr2:5832493..5832507,+!p2@SOX11!1.76!55.89!SOX11;;chr2:200322723..200322739,-!p6@SATB2!1.71!49.90!SATB2;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.71!49.90!PEG3;;chr9:77112244..77112262,+!p1@RORB!1.69!53.90!RORB;;chr14:33403881..33403924,+!p1@NPAS3!1.69!47.91!NPAS3;;chr5:88179017..88179046,-!p2@MEF2C!1.63!159.69!MEF2C;;chr7:96654133..96654150,-!p1@DLX5!1.63!41.92!DLX5;;chr8:65492756..65492768,+!p2@BHLHE22!1.63!41.92!BHLHE22;;chr14:29236269..29236285,+!p3@FOXG1!1.63!41.92!FOXG1;;chr2:200325204..200325243,-!p7@SATB2!1.63!41.92!SATB2;;chr2:2335109..2335134,-!p2@MYT1L!1.63!41.92!MYT1L;;chr9:124991204..124991246,-!p1@LHX6!1.63!41.92!LHX6;;chr1:38512457..38512474,-!p1@POU3F1!1.62!43.92!POU3F1;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.61!39.92!POU3F3;;chr2:60781201..60781258,-!p3@BCL11A!1.61!39.92!BCL11A;;chr15:80696703..80696754,+!p1@ARNT2!1.59!49.90!ARNT2;;chr2:16080659..16080685,+!p1@MYCN!1.59!37.93!MYCN;;chr2:162272889..162272915,+!p2@TBR1!1.59!37.93!TBR1;;chr2:172950227..172950249,+!p2@DLX1!1.59!37.93!DLX1;;chr11:8102846..8102892,+!p1@TUB!1.57!49.90!TUB;;chr19:13135582..13135600,+!p3@NFIX!1.57!35.93!NFIX;;chrX:82763292..82763317,+!p1@POU3F4!1.57!35.93!POU3F4;;chr1:151032860..151032918,+!p1@MLLT11!1.56!403.22!MLLT11;;chr8:93107451..93107468,-!p2@RUNX1T1!1.54!33.93!RUNX1T1;;chr15:80733570..80733659,+!p2@ARNT2!1.54!33.93!ARNT2;;chr2:172967621..172967637,-!p1@DLX2!1.52!83.84!DLX2;;chr17:7492684..7492778,-!p2@SOX15!1.52!65.87!SOX15;;chr2:145277882..145277967,-!p3@ZEB2!1.52!53.90!ZEB2;;chr4:57547454..57547469,-!p1@HOPX!1.52!31.94!HOPX;;chr18:53070846..53070902,-!p6@TCF4!1.52!31.94!TCF4;;chr5:88179271..88179286,-!p7@MEF2C!1.49!29.94!MEF2C;;chr8:93115274..93115323,-!p4@RUNX1T1!1.49!29.94!RUNX1T1;;chr9:126774058..126774081,+!p3@LHX2!1.49!29.94!LHX2;;chr2:200320768..200320800,-!p4@SATB2!1.46!27.95!SATB2;;chr5:88179230..88179270,-!p4@MEF2C!1.45!51.90!MEF2C;;chr20:20348740..20348757,+!p1@INSM1!1.43!25.95!INSM1;;chr12:106976774..106976788,+!p1@RFX4!1.43!25.95!RFX4;;chr16:1031762..1031781,+!p1@SOX8!1.43!25.95!SOX8;;chr2:60780607..60780624,-!p2@BCL11A!1.42!75.85!BCL11A;;chr21:34442540..34442560,+!p2@OLIG1!1.40!23.95!OLIG1;;chrX:139587228..139587234,-!p1@SOX3!1.40!23.95!SOX3;;chr2:200323414..200323455,-!p1@SATB2!1.39!49.90!SATB2;;chr2:166326200..166326216,+!p1@CSRNP3!1.39!33.93!CSRNP3;;chr1:214161272..214161322,+!p1@PROX1!1.38!31.94!PROX1;;chr1:41827095..41827155,+!p1@FOXO6!1.37!29.94!FOXO6;;chr17:53342311..53342400,+!p1@HLF!1.37!25.95!HLF;;chr2:175199675..175199688,+!p1@SP9!1.36!21.96!SP9;;chr8:65492915..65492932,+!p1@BHLHE22!1.36!21.96!BHLHE22;;chr19:47523058..47523114,+!p1@NPAS1!1.36!21.96!NPAS1;;chr18:42260059..42260132,+!p1@SETBP1!1.34!33.93!SETBP1;;chrX:84498989..84499003,+!p1@ZNF711!1.33!27.95!ZNF711;;chr7:150974206..150974255,-!p1@SMARCD3!1.32!121.76!SMARCD3;;chr2:239148671..239148686,-!p1@HES6!1.32!71.86!HES6;;chr2:200322259..200322280,-!p5@SATB2!1.32!19.96!SATB2;;chr6:99282475..99282501,+!p1@POU3F2!1.32!19.96!POU3F2;;chr18:53070913..53070933,-!p16@TCF4!1.32!19.96!TCF4;;chr19:13135731..13135787,+!p10@NFIX!1.32!19.96!NFIX;;chrY:21906594..21906622,-!p1@KDM5D!1.32!19.96!KDM5D;;chr12:24102576..24102623,-!p2@SOX5!1.32!19.96!SOX5;;chr14:29236301..29236317,+!p5@FOXG1!1.32!19.96!FOXG1;;chr2:60780753..60780800,-!p1@BCL11A!1.31!93.82!BCL11A;;chr19:57183114..57183145,-!p1@ZNF835!1.31!21.96!ZNF835;;chr2:113057415..113057477,+!p3@ZC3H6!1.29!23.95!ZC3H6;;chr5:92919375..92919438,+!p6@NR2F1!1.29!19.96!NR2F1;;chr8:80679993..80680011,-!p1@HEY1!1.28!25.95!HEY1;;chr8:30890810..30890880,-!p1@PURG!1.28!17.97!PURG;;chr2:105470614..105470625,+!p@chr2:105470614..105470625,+!1.28!17.97!POU3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| |||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000955;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016 | |||
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0006238,UBERON:0010316 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 67: | Line 41: | ||
|fonse_treatment= | |fonse_treatment= | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/brain%252c%2520fetal%252c%2520pool1.CNhs11797.10085-102B4.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/brain%252c%2520fetal%252c%2520pool1.CNhs11797.10085-102B4.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/brain%252c%2520fetal%252c%2520pool1.CNhs11797.10085-102B4.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/brain%252c%2520fetal%252c%2520pool1.CNhs11797.10085-102B4.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/brain%252c%2520fetal%252c%2520pool1.CNhs11797.10085-102B4.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10085-102B4 | |||
|is_a=EFO:0002091;;FF:0010085 | |||
|is_obsolete= | |||
|library_id=CNhs11797 | |||
|library_id_phase_based=2:CNhs11797 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10085 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10085 | |||
|name=brain, fetal, pool1 | |||
|namespace=FANTOM5 | |||
|part_of= | |||
|profile_cagescan=,,, | |||
|profile_hcage=CNhs11797,LSID820,release009,COMPLETED | |||
|profile_rnaseq= | |||
|profile_srnaseq=,,, | |||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,0.316243779801507,0,0.199199677694379,-0.0441226556329956,0,0,0,0,0,0,0,0,0,0,0,0,0,0.691055610998118,0,0,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,0.188740369766205,0,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,1.22965890728065,0,0.186218985256209,0,-0.0969923612426051,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0.476561809887893,0,0,0,0,0.476561809887893,0,0,0,0.0890956697933222,0,0,0,0,0,0.2991066792506,0.687254608264295,0.520314813516805,0,0.133695784789545,0.0116024394561548,0.449512530826742,0,0,0,0,-0.0980353512377064,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0,0,0,0,-0.0164411187229717,0,0,0,0,0,0 | |||
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| |||
|rna_box=102 | |||
|rna_catalog_number=Cat: 636643 Lot: 8101369A-5 | |||
|rna_concentration=1 | |||
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0 | |||
|rna_lot_number=8101369A-5 | |||
|rna_od260/230= | |||
|rna_od260/280= | |||
|rna_position=B4 | |||
|rna_rin= | |||
|rna_sample_type=total RNA | |||
|rna_tube_id=102B4 | |||
|rna_weight_ug=10 | |||
|sample_age= | |||
|sample_category=tissues | |||
|sample_cell_catalog=NA | |||
|sample_cell_line= | |||
|sample_cell_lot=NA | |||
|sample_cell_type=CELL MIXTURE - tissue sample | |||
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest) | |||
|sample_company=Clontech | |||
|sample_description= | |||
|sample_dev_stage=20-33 weeks fetus | |||
|sample_disease=normal | |||
|sample_donor(cell lot)=59 pool | |||
|sample_ethnicity=C | |||
|sample_experimental_condition= | |||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.12523354707349e-301!GO:0005737;cytoplasm;3.69262433319926e-131!GO:0043226;organelle;1.86223613329406e-91!GO:0043229;intracellular organelle;5.92279220467013e-91!GO:0044444;cytoplasmic part;1.72932643148596e-88!GO:0043227;membrane-bound organelle;4.8914669624592e-87!GO:0043231;intracellular membrane-bound organelle;6.78600640913744e-87!GO:0044422;organelle part;7.25541378611217e-70!GO:0044446;intracellular organelle part;9.53760583872565e-69!GO:0005515;protein binding;1.38264777209479e-64!GO:0032991;macromolecular complex;2.81256238736352e-62!GO:0030529;ribonucleoprotein complex;7.80509497227188e-49!GO:0016043;cellular component organization and biogenesis;8.72552136050262e-47!GO:0003723;RNA binding;4.58406457658887e-39!GO:0005739;mitochondrion;2.29695967273465e-37!GO:0031090;organelle membrane;7.28649860961669e-36!GO:0043234;protein complex;6.73027133984444e-33!GO:0005840;ribosome;9.30477668411915e-33!GO:0044238;primary metabolic process;3.54107917732629e-31!GO:0033036;macromolecule localization;7.32533212505686e-31!GO:0044428;nuclear part;1.74923794358225e-30!GO:0043233;organelle lumen;4.01099779799543e-30!GO:0031974;membrane-enclosed lumen;4.01099779799543e-30!GO:0015031;protein transport;5.85563845783042e-30!GO:0044237;cellular metabolic process;1.03162612251535e-29!GO:0003735;structural constituent of ribosome;2.05959186063065e-29!GO:0044429;mitochondrial part;2.39644093435692e-28!GO:0008104;protein localization;2.88947244460999e-28!GO:0043170;macromolecule metabolic process;1.79969600212816e-27!GO:0045184;establishment of protein localization;2.93388240310298e-27!GO:0019538;protein metabolic process;9.99015530908011e-27!GO:0033279;ribosomal subunit;2.09643188617797e-26!GO:0031975;envelope;4.94980372370461e-25!GO:0031967;organelle envelope;8.52948238465027e-25!GO:0046907;intracellular transport;2.89844842192044e-24!GO:0006412;translation;3.22708529765337e-24!GO:0044260;cellular macromolecule metabolic process;8.32286191769956e-24!GO:0044267;cellular protein metabolic process;8.65226711842304e-24!GO:0006396;RNA processing;1.85509131790165e-23!GO:0005829;cytosol;4.92994331040903e-23!GO:0016071;mRNA metabolic process;5.62133644108041e-23!GO:0006996;organelle organization and biogenesis;2.39999336851839e-22!GO:0051641;cellular localization;7.51067916086895e-22!GO:0006119;oxidative phosphorylation;1.02725937993915e-21!GO:0051649;establishment of cellular localization;1.29060226383924e-21!GO:0005634;nucleus;2.31556518122361e-21!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.56000133598321e-21!GO:0008380;RNA splicing;3.19573371157766e-21!GO:0005794;Golgi apparatus;1.15272950020439e-20!GO:0009058;biosynthetic process;1.60050779680277e-20!GO:0044249;cellular biosynthetic process;2.16168267742447e-20!GO:0005740;mitochondrial envelope;2.29159814394688e-20!GO:0065003;macromolecular complex assembly;2.68851391937447e-20!GO:0016192;vesicle-mediated transport;6.68961400142189e-20!GO:0031966;mitochondrial membrane;9.37542712126883e-20!GO:0006397;mRNA processing;1.08564563439834e-19!GO:0044445;cytosolic part;8.0676102200402e-19!GO:0022607;cellular component assembly;3.27836395110833e-18!GO:0031981;nuclear lumen;4.46483799541162e-18!GO:0019866;organelle inner membrane;5.79541330360933e-18!GO:0009059;macromolecule biosynthetic process;1.12819548789012e-17!GO:0006886;intracellular protein transport;1.53233680506024e-17!GO:0007399;nervous system development;3.79999969717133e-17!GO:0005743;mitochondrial inner membrane;1.21630592753328e-16!GO:0044455;mitochondrial membrane part;1.77061404919295e-16!GO:0005746;mitochondrial respiratory chain;1.53684688655927e-15!GO:0043283;biopolymer metabolic process;1.57977020097604e-15!GO:0050136;NADH dehydrogenase (quinone) activity;1.88318187375102e-14!GO:0003954;NADH dehydrogenase activity;1.88318187375102e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.88318187375102e-14!GO:0015935;small ribosomal subunit;6.54223992070996e-14!GO:0031988;membrane-bound vesicle;7.37712268005395e-14!GO:0006512;ubiquitin cycle;7.41581278991672e-14!GO:0005681;spliceosome;1.41224515137879e-13!GO:0015934;large ribosomal subunit;1.68587398817823e-13!GO:0016874;ligase activity;2.06028221158732e-13!GO:0016023;cytoplasmic membrane-bound vesicle;2.61110534107128e-13!GO:0043412;biopolymer modification;3.41808079116977e-13!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.88921120249617e-13!GO:0031982;vesicle;3.88921120249617e-13!GO:0012505;endomembrane system;4.05964050649665e-13!GO:0000166;nucleotide binding;7.60374150260629e-13!GO:0006464;protein modification process;1.09484046057142e-12!GO:0031410;cytoplasmic vesicle;1.5443270751852e-12!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.85502771479245e-12!GO:0016462;pyrophosphatase activity;1.96995427423007e-12!GO:0042775;organelle ATP synthesis coupled electron transport;2.32168300298647e-12!GO:0042773;ATP synthesis coupled electron transport;2.32168300298647e-12!GO:0016817;hydrolase activity, acting on acid anhydrides;2.35222878239833e-12!GO:0030964;NADH dehydrogenase complex (quinone);2.8661543274981e-12!GO:0045271;respiratory chain complex I;2.8661543274981e-12!GO:0005747;mitochondrial respiratory chain complex I;2.8661543274981e-12!GO:0043228;non-membrane-bound organelle;3.21680091065596e-12!GO:0043232;intracellular non-membrane-bound organelle;3.21680091065596e-12!GO:0043687;post-translational protein modification;3.28383041297908e-12!GO:0017111;nucleoside-triphosphatase activity;4.19152979671008e-12!GO:0010467;gene expression;6.34989492927742e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;8.49922396228616e-12!GO:0005654;nucleoplasm;2.71816677036384e-11!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.02954326637185e-11!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.22603970648951e-11!GO:0006457;protein folding;4.52283705625519e-11!GO:0044431;Golgi apparatus part;8.11661135087685e-11!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.0141593448511e-10!GO:0006325;establishment and/or maintenance of chromatin architecture;1.08611404891123e-10!GO:0044451;nucleoplasm part;1.18486845238316e-10!GO:0032553;ribonucleotide binding;2.67147640693419e-10!GO:0032555;purine ribonucleotide binding;2.67147640693419e-10!GO:0019829;cation-transporting ATPase activity;3.85031210476029e-10!GO:0045045;secretory pathway;6.89377663434332e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;7.08494292664109e-10!GO:0048193;Golgi vesicle transport;7.70580526635049e-10!GO:0031980;mitochondrial lumen;7.80248525786279e-10!GO:0005759;mitochondrial matrix;7.80248525786279e-10!GO:0006323;DNA packaging;8.24738104891623e-10!GO:0048770;pigment granule;1.02494657351639e-09!GO:0042470;melanosome;1.02494657351639e-09!GO:0051082;unfolded protein binding;1.2039425512523e-09!GO:0051186;cofactor metabolic process;2.80630849533556e-09!GO:0006793;phosphorus metabolic process;3.14394344266261e-09!GO:0006796;phosphate metabolic process;3.14394344266261e-09!GO:0030135;coated vesicle;3.81308496397134e-09!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;4.62937604339065e-09!GO:0008134;transcription factor binding;7.75438528077639e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;8.1260026238481e-09!GO:0017076;purine nucleotide binding;8.87761455109075e-09!GO:0022618;protein-RNA complex assembly;1.18251214257038e-08!GO:0008565;protein transporter activity;1.23226159482336e-08!GO:0000139;Golgi membrane;1.69591197895113e-08!GO:0015986;ATP synthesis coupled proton transport;1.76556914622452e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.76556914622452e-08!GO:0000398;nuclear mRNA splicing, via spliceosome;2.74339325311865e-08!GO:0000375;RNA splicing, via transesterification reactions;2.74339325311865e-08!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.74339325311865e-08!GO:0008135;translation factor activity, nucleic acid binding;2.92874533726797e-08!GO:0007264;small GTPase mediated signal transduction;3.10284350229279e-08!GO:0009150;purine ribonucleotide metabolic process;5.11314340269784e-08!GO:0008639;small protein conjugating enzyme activity;5.50303530287349e-08!GO:0006605;protein targeting;5.57548271959407e-08!GO:0006913;nucleocytoplasmic transport;5.65060375786753e-08!GO:0009141;nucleoside triphosphate metabolic process;6.06095989694066e-08!GO:0009199;ribonucleoside triphosphate metabolic process;6.28146488206273e-08!GO:0005768;endosome;6.93691729490516e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;6.93691729490516e-08!GO:0009144;purine nucleoside triphosphate metabolic process;6.93691729490516e-08!GO:0006163;purine nucleotide metabolic process;7.18325599351283e-08!GO:0043005;neuron projection;7.52393975383427e-08!GO:0009259;ribonucleotide metabolic process;8.28763914555522e-08!GO:0000502;proteasome complex (sensu Eukaryota);8.51956111237915e-08!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;9.56133656635277e-08!GO:0004842;ubiquitin-protein ligase activity;9.63920329983538e-08!GO:0051169;nuclear transport;1.06523206820339e-07!GO:0044265;cellular macromolecule catabolic process;1.1191703326548e-07!GO:0046034;ATP metabolic process;1.26525015092114e-07!GO:0009152;purine ribonucleotide biosynthetic process;1.53887161227058e-07!GO:0051603;proteolysis involved in cellular protein catabolic process;1.60717825029205e-07!GO:0015631;tubulin binding;1.68604167512612e-07!GO:0003924;GTPase activity;1.68647558602062e-07!GO:0031965;nuclear membrane;1.71591454903703e-07!GO:0006511;ubiquitin-dependent protein catabolic process;1.87469203657387e-07!GO:0006164;purine nucleotide biosynthetic process;2.31678809287959e-07!GO:0005761;mitochondrial ribosome;2.36432639182077e-07!GO:0000313;organellar ribosome;2.36432639182077e-07!GO:0019941;modification-dependent protein catabolic process;2.38020820046111e-07!GO:0043632;modification-dependent macromolecule catabolic process;2.38020820046111e-07!GO:0009260;ribonucleotide biosynthetic process;2.38020820046111e-07!GO:0006333;chromatin assembly or disassembly;2.67010028870536e-07!GO:0044257;cellular protein catabolic process;2.7789726815153e-07!GO:0009142;nucleoside triphosphate biosynthetic process;3.11132019550717e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;3.11132019550717e-07!GO:0019787;small conjugating protein ligase activity;3.21588274151701e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;3.40678454373933e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;3.40678454373933e-07!GO:0006732;coenzyme metabolic process;3.72614557894971e-07!GO:0006259;DNA metabolic process;5.01359736241897e-07!GO:0006754;ATP biosynthetic process;5.05773673179266e-07!GO:0006753;nucleoside phosphate metabolic process;5.05773673179266e-07!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;5.81726185207816e-07!GO:0032559;adenyl ribonucleotide binding;1.09865621788458e-06!GO:0016310;phosphorylation;1.11001466627643e-06!GO:0005905;coated pit;1.3207268985982e-06!GO:0006461;protein complex assembly;1.50939121814004e-06!GO:0030182;neuron differentiation;1.76841912871243e-06!GO:0051276;chromosome organization and biogenesis;2.43771123650652e-06!GO:0005524;ATP binding;2.5021547034796e-06!GO:0007010;cytoskeleton organization and biogenesis;2.51566812522964e-06!GO:0048475;coated membrane;2.5568823829632e-06!GO:0030117;membrane coat;2.5568823829632e-06!GO:0032940;secretion by cell;3.08086638685714e-06!GO:0016881;acid-amino acid ligase activity;3.18942242929045e-06!GO:0009060;aerobic respiration;3.26000379788742e-06!GO:0006810;transport;3.72430538946881e-06!GO:0043285;biopolymer catabolic process;4.14703269256314e-06!GO:0016879;ligase activity, forming carbon-nitrogen bonds;4.29770861342136e-06!GO:0044248;cellular catabolic process;4.29770861342136e-06!GO:0065004;protein-DNA complex assembly;4.29770861342136e-06!GO:0016044;membrane organization and biogenesis;4.87517463671872e-06!GO:0016469;proton-transporting two-sector ATPase complex;5.49059591049239e-06!GO:0005730;nucleolus;5.89558235934147e-06!GO:0006334;nucleosome assembly;7.57093490472942e-06!GO:0003743;translation initiation factor activity;7.97838664305484e-06!GO:0000902;cell morphogenesis;8.38245365905125e-06!GO:0032989;cellular structure morphogenesis;8.38245365905125e-06!GO:0009057;macromolecule catabolic process;8.57022610338446e-06!GO:0015078;hydrogen ion transmembrane transporter activity;8.57022610338446e-06!GO:0005635;nuclear envelope;8.72650804128876e-06!GO:0031497;chromatin assembly;9.19434302944708e-06!GO:0030136;clathrin-coated vesicle;9.34647406372935e-06!GO:0006446;regulation of translational initiation;9.42475774113402e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;9.42475774113402e-06!GO:0048699;generation of neurons;9.48198925391105e-06!GO:0022008;neurogenesis;9.6361836015091e-06!GO:0044440;endosomal part;9.76421110279985e-06!GO:0010008;endosome membrane;9.76421110279985e-06!GO:0016604;nuclear body;1.01202073554243e-05!GO:0005525;GTP binding;1.01908791162932e-05!GO:0030163;protein catabolic process;1.05367889895327e-05!GO:0051179;localization;1.10722203905739e-05!GO:0008092;cytoskeletal protein binding;1.13267835742095e-05!GO:0044453;nuclear membrane part;1.21013320014034e-05!GO:0048666;neuron development;1.24337918200171e-05!GO:0030036;actin cytoskeleton organization and biogenesis;1.30988529398965e-05!GO:0005783;endoplasmic reticulum;1.3180378699175e-05!GO:0016568;chromatin modification;1.35901541937857e-05!GO:0045333;cellular respiration;1.47255468059926e-05!GO:0015630;microtubule cytoskeleton;1.93580128180237e-05!GO:0005083;small GTPase regulator activity;2.00981338900474e-05!GO:0045259;proton-transporting ATP synthase complex;2.29037825514604e-05!GO:0030554;adenyl nucleotide binding;2.34467709674807e-05!GO:0006413;translational initiation;2.53221385292689e-05!GO:0030532;small nuclear ribonucleoprotein complex;2.53911730399748e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;2.58059357737683e-05!GO:0015399;primary active transmembrane transporter activity;2.58059357737683e-05!GO:0030030;cell projection organization and biogenesis;2.58059357737683e-05!GO:0048858;cell projection morphogenesis;2.58059357737683e-05!GO:0032990;cell part morphogenesis;2.58059357737683e-05!GO:0031175;neurite development;2.76328763957757e-05!GO:0000904;cellular morphogenesis during differentiation;2.82326900184564e-05!GO:0048471;perinuclear region of cytoplasm;2.9767308912539e-05!GO:0016607;nuclear speck;3.17014080050933e-05!GO:0030120;vesicle coat;3.26906391385117e-05!GO:0030662;coated vesicle membrane;3.26906391385117e-05!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;3.26906391385117e-05!GO:0008017;microtubule binding;3.57736322602288e-05!GO:0042623;ATPase activity, coupled;3.5804662529827e-05!GO:0016887;ATPase activity;3.70983756199664e-05!GO:0005643;nuclear pore;3.84090341601579e-05!GO:0048667;neuron morphogenesis during differentiation;3.88400530223069e-05!GO:0048812;neurite morphogenesis;3.88400530223069e-05!GO:0009055;electron carrier activity;4.05609614401343e-05!GO:0008287;protein serine/threonine phosphatase complex;4.12541347283044e-05!GO:0032446;protein modification by small protein conjugation;4.8440585163478e-05!GO:0006752;group transfer coenzyme metabolic process;4.84546253299242e-05!GO:0045786;negative regulation of progression through cell cycle;4.9813360456214e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;5.67594280120165e-05!GO:0005874;microtubule;5.78977490269063e-05!GO:0017038;protein import;6.52962182736353e-05!GO:0003712;transcription cofactor activity;7.82247908668845e-05!GO:0016311;dephosphorylation;8.16983029012169e-05!GO:0051188;cofactor biosynthetic process;8.21610085491164e-05!GO:0000785;chromatin;8.33226009732927e-05!GO:0016567;protein ubiquitination;8.45284937644594e-05!GO:0006099;tricarboxylic acid cycle;9.02066323969643e-05!GO:0046356;acetyl-CoA catabolic process;9.02066323969643e-05!GO:0032561;guanyl ribonucleotide binding;9.02932897418328e-05!GO:0019001;guanyl nucleotide binding;9.02932897418328e-05!GO:0005770;late endosome;9.90664847753738e-05!GO:0030425;dendrite;0.000100505205490754!GO:0019717;synaptosome;0.00011198709333173!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000113928477641927!GO:0043492;ATPase activity, coupled to movement of substances;0.000114839497539895!GO:0007409;axonogenesis;0.000119732404714471!GO:0030029;actin filament-based process;0.000127895964772456!GO:0051234;establishment of localization;0.000140297395291069!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000165560191335364!GO:0030426;growth cone;0.000166209213229619!GO:0030427;site of polarized growth;0.000194548493085666!GO:0006084;acetyl-CoA metabolic process;0.00021548847638761!GO:0009109;coenzyme catabolic process;0.000222208886448805!GO:0006414;translational elongation;0.000240099399076966!GO:0030695;GTPase regulator activity;0.000242902474061758!GO:0005798;Golgi-associated vesicle;0.000244286183729543!GO:0000245;spliceosome assembly;0.000254105918511959!GO:0009117;nucleotide metabolic process;0.000272159014944255!GO:0051187;cofactor catabolic process;0.000286536833101289!GO:0006403;RNA localization;0.000294094534479576!GO:0006897;endocytosis;0.00030276965974384!GO:0010324;membrane invagination;0.00030276965974384!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.000310309032347313!GO:0004812;aminoacyl-tRNA ligase activity;0.000310309032347313!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.000310309032347313!GO:0050767;regulation of neurogenesis;0.000332476523466812!GO:0016740;transferase activity;0.000343084607478887!GO:0005769;early endosome;0.000355794866281732!GO:0050657;nucleic acid transport;0.000393106749603272!GO:0051236;establishment of RNA localization;0.000393106749603272!GO:0050658;RNA transport;0.000393106749603272!GO:0006470;protein amino acid dephosphorylation;0.000407169470901429!GO:0031252;leading edge;0.000429703433445743!GO:0044432;endoplasmic reticulum part;0.000476530323848646!GO:0004721;phosphoprotein phosphatase activity;0.00049885347524474!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000506965296510592!GO:0048523;negative regulation of cellular process;0.000538274650646802!GO:0007269;neurotransmitter secretion;0.000564584979503394!GO:0043623;cellular protein complex assembly;0.000603556639748879!GO:0007265;Ras protein signal transduction;0.000675847582391812!GO:0003729;mRNA binding;0.000686974315030949!GO:0030027;lamellipodium;0.000754301285195161!GO:0005793;ER-Golgi intermediate compartment;0.000768735069163327!GO:0048489;synaptic vesicle transport;0.000788167029981633!GO:0006606;protein import into nucleus;0.000790741402072928!GO:0009108;coenzyme biosynthetic process;0.000835619974574574!GO:0030118;clathrin coat;0.000855110716199434!GO:0043038;amino acid activation;0.000900845633375763!GO:0006418;tRNA aminoacylation for protein translation;0.000900845633375763!GO:0043039;tRNA aminoacylation;0.000900845633375763!GO:0022890;inorganic cation transmembrane transporter activity;0.00105453555108849!GO:0006888;ER to Golgi vesicle-mediated transport;0.00106038313456551!GO:0009165;nucleotide biosynthetic process;0.00106038313456551!GO:0051170;nuclear import;0.00112981497369378!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00122351161625213!GO:0046930;pore complex;0.00124346051749831!GO:0019226;transmission of nerve impulse;0.00125144891363654!GO:0008021;synaptic vesicle;0.00131505842517001!GO:0000151;ubiquitin ligase complex;0.00134787166044673!GO:0006613;cotranslational protein targeting to membrane;0.00137807799158663!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00154038899605371!GO:0016070;RNA metabolic process;0.0017108417314471!GO:0051168;nuclear export;0.00176374538582443!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00176374538582443!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00176374538582443!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00176374538582443!GO:0003746;translation elongation factor activity;0.00177101271322254!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00183126531923404!GO:0016301;kinase activity;0.0020142575503793!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00202181589013622!GO:0051128;regulation of cellular component organization and biogenesis;0.00211959201722916!GO:0051056;regulation of small GTPase mediated signal transduction;0.00211959201722916!GO:0031902;late endosome membrane;0.00226763783519534!GO:0016791;phosphoric monoester hydrolase activity;0.00228058794470005!GO:0005762;mitochondrial large ribosomal subunit;0.00244721790895051!GO:0000315;organellar large ribosomal subunit;0.00244721790895051!GO:0051726;regulation of cell cycle;0.00249269442917694!GO:0019899;enzyme binding;0.00265252903520556!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00267228029713255!GO:0065002;intracellular protein transport across a membrane;0.00273170294377055!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.00276537310832378!GO:0019208;phosphatase regulator activity;0.00277590757725766!GO:0030133;transport vesicle;0.00299886632090201!GO:0045055;regulated secretory pathway;0.00314791353856839!GO:0048519;negative regulation of biological process;0.00337526185305454!GO:0000159;protein phosphatase type 2A complex;0.00337526185305454!GO:0051087;chaperone binding;0.00349719484154958!GO:0000074;regulation of progression through cell cycle;0.00350598465011263!GO:0043025;cell soma;0.00358856186902192!GO:0048487;beta-tubulin binding;0.00364304419169518!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.00366539271523056!GO:0005774;vacuolar membrane;0.00366539271523056!GO:0003676;nucleic acid binding;0.00372378818047983!GO:0005773;vacuole;0.00381640645456676!GO:0042175;nuclear envelope-endoplasmic reticulum network;0.00427354522232843!GO:0005789;endoplasmic reticulum membrane;0.0043609897910833!GO:0046578;regulation of Ras protein signal transduction;0.00445193771286975!GO:0042254;ribosome biogenesis and assembly;0.00458568581689961!GO:0008250;oligosaccharyl transferase complex;0.00481420177828017!GO:0050770;regulation of axonogenesis;0.00491097482971305!GO:0006595;polyamine metabolic process;0.00493432228941157!GO:0008601;protein phosphatase type 2A regulator activity;0.00510824761955398!GO:0051028;mRNA transport;0.00511586803701078!GO:0001578;microtubule bundle formation;0.005353061530595!GO:0009056;catabolic process;0.00545707966728643!GO:0016197;endosome transport;0.00555360517487324!GO:0007242;intracellular signaling cascade;0.00570724571109305!GO:0048167;regulation of synaptic plasticity;0.00579865025541694!GO:0051246;regulation of protein metabolic process;0.00580687916464433!GO:0016126;sterol biosynthetic process;0.00582881906526741!GO:0005839;proteasome core complex (sensu Eukaryota);0.00583380546703695!GO:0031072;heat shock protein binding;0.00621538967857651!GO:0007266;Rho protein signal transduction;0.00625182916990014!GO:0007049;cell cycle;0.00690685220336208!GO:0003697;single-stranded DNA binding;0.00698759021677677!GO:0007268;synaptic transmission;0.00699724653466889!GO:0006891;intra-Golgi vesicle-mediated transport;0.00709019454131263!GO:0004386;helicase activity;0.00712809546993761!GO:0051920;peroxiredoxin activity;0.00713148220821327!GO:0030660;Golgi-associated vesicle membrane;0.00713148220821327!GO:0012506;vesicle membrane;0.00733016932657386!GO:0004722;protein serine/threonine phosphatase activity;0.00749634187858001!GO:0043284;biopolymer biosynthetic process;0.00751130135578353!GO:0007005;mitochondrion organization and biogenesis;0.00759267136240032!GO:0051427;hormone receptor binding;0.00768371563048917!GO:0030132;clathrin coat of coated pit;0.00770559282205077!GO:0005741;mitochondrial outer membrane;0.00772156668413723!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00772156668413723!GO:0048468;cell development;0.00772156668413723!GO:0006818;hydrogen transport;0.00781503229867123!GO:0005001;transmembrane receptor protein tyrosine phosphatase activity;0.00781503229867123!GO:0019198;transmembrane receptor protein phosphatase activity;0.00781503229867123!GO:0008654;phospholipid biosynthetic process;0.00784219795906039!GO:0001505;regulation of neurotransmitter levels;0.00814220154946979!GO:0030137;COPI-coated vesicle;0.00819056738493546!GO:0019904;protein domain specific binding;0.0085896114988194!GO:0031301;integral to organelle membrane;0.0085896114988194!GO:0006695;cholesterol biosynthetic process;0.00862415464478957!GO:0019888;protein phosphatase regulator activity;0.00899028194191706!GO:0019887;protein kinase regulator activity;0.0090014445990597!GO:0000314;organellar small ribosomal subunit;0.00918318600471762!GO:0005763;mitochondrial small ribosomal subunit;0.00918318600471762!GO:0004674;protein serine/threonine kinase activity;0.00935737462523514!GO:0000786;nucleosome;0.00947071719120222!GO:0005869;dynactin complex;0.00983825527748359!GO:0044437;vacuolar part;0.00993896726377791!GO:0015980;energy derivation by oxidation of organic compounds;0.00993896726377791!GO:0006892;post-Golgi vesicle-mediated transport;0.0103195672666738!GO:0008139;nuclear localization sequence binding;0.0103737403075783!GO:0031901;early endosome membrane;0.010545505071032!GO:0043566;structure-specific DNA binding;0.0107446797584022!GO:0031124;mRNA 3'-end processing;0.0108872437727692!GO:0030424;axon;0.0109765824722837!GO:0044433;cytoplasmic vesicle part;0.011120954606219!GO:0006916;anti-apoptosis;0.0116113193879738!GO:0015992;proton transport;0.0118018388598966!GO:0005875;microtubule associated complex;0.0118193977658697!GO:0007019;microtubule depolymerization;0.0119860313510072!GO:0003714;transcription corepressor activity;0.0119895363899173!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.011998143507037!GO:0035257;nuclear hormone receptor binding;0.0120044021752319!GO:0008026;ATP-dependent helicase activity;0.0123100296268441!GO:0005667;transcription factor complex;0.012431690527664!GO:0006399;tRNA metabolic process;0.0124508549670177!GO:0003713;transcription coactivator activity;0.0124729347849981!GO:0030041;actin filament polymerization;0.0126013428692059!GO:0000059;protein import into nucleus, docking;0.0126677106733327!GO:0019843;rRNA binding;0.0129331985144172!GO:0050803;regulation of synapse structure and activity;0.0137499630872251!GO:0019902;phosphatase binding;0.0138288180219372!GO:0051252;regulation of RNA metabolic process;0.0140991572526991!GO:0008154;actin polymerization and/or depolymerization;0.0144039785682043!GO:0030176;integral to endoplasmic reticulum membrane;0.014779131665132!GO:0031968;organelle outer membrane;0.0152576002072945!GO:0030658;transport vesicle membrane;0.0152576002072945!GO:0004298;threonine endopeptidase activity;0.015382760660908!GO:0006364;rRNA processing;0.0154870065747238!GO:0016585;chromatin remodeling complex;0.0158438105658095!GO:0005048;signal sequence binding;0.0163322044524839!GO:0007417;central nervous system development;0.0166577622636964!GO:0005765;lysosomal membrane;0.0168996105292303!GO:0019867;outer membrane;0.0169377639945145!GO:0004576;oligosaccharyl transferase activity;0.0176683601552814!GO:0019207;kinase regulator activity;0.0178116231666731!GO:0016050;vesicle organization and biogenesis;0.0178260647478304!GO:0019894;kinesin binding;0.0178784860088646!GO:0006650;glycerophospholipid metabolic process;0.0180316369945324!GO:0005085;guanyl-nucleotide exchange factor activity;0.0181564423103949!GO:0007017;microtubule-based process;0.0184333744138559!GO:0009966;regulation of signal transduction;0.0184333744138559!GO:0043488;regulation of mRNA stability;0.0184800510734697!GO:0043487;regulation of RNA stability;0.0184800510734697!GO:0005684;U2-dependent spliceosome;0.0185157909836091!GO:0043069;negative regulation of programmed cell death;0.0185662347949818!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0185662347949818!GO:0005885;Arp2/3 protein complex;0.0186174164676855!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0186692392693678!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0186692392693678!GO:0030031;cell projection biogenesis;0.0189527927912019!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.0192952857460992!GO:0016564;transcription repressor activity;0.0198815133335342!GO:0031111;negative regulation of microtubule polymerization or depolymerization;0.0206407849500461!GO:0043066;negative regulation of apoptosis;0.0207884625787511!GO:0030867;rough endoplasmic reticulum membrane;0.0214324998746237!GO:0018196;peptidyl-asparagine modification;0.0219250031442448!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0219250031442448!GO:0030145;manganese ion binding;0.0219283513149722!GO:0000118;histone deacetylase complex;0.0224293765083724!GO:0003724;RNA helicase activity;0.0224459816291187!GO:0030032;lamellipodium biogenesis;0.0233562595892101!GO:0030659;cytoplasmic vesicle membrane;0.0246125046083477!GO:0008361;regulation of cell size;0.0247137434135924!GO:0006402;mRNA catabolic process;0.0254613333016645!GO:0005791;rough endoplasmic reticulum;0.0254816581848414!GO:0050811;GABA receptor binding;0.0264714043932097!GO:0008088;axon cargo transport;0.026624261884239!GO:0006405;RNA export from nucleus;0.026738762721816!GO:0008286;insulin receptor signaling pathway;0.0270517294322746!GO:0008047;enzyme activator activity;0.0271185642752616!GO:0016072;rRNA metabolic process;0.0272909571492596!GO:0007411;axon guidance;0.0272909571492596!GO:0007006;mitochondrial membrane organization and biogenesis;0.0275097535336447!GO:0016049;cell growth;0.0278543779590782!GO:0042596;fear response;0.0278650173729277!GO:0030125;clathrin vesicle coat;0.0290551742515065!GO:0030665;clathrin coated vesicle membrane;0.0290551742515065!GO:0000323;lytic vacuole;0.0290551742515065!GO:0005764;lysosome;0.0290551742515065!GO:0043414;biopolymer methylation;0.0300783300891471!GO:0030320;cellular monovalent inorganic anion homeostasis;0.0306046069717519!GO:0055083;monovalent inorganic anion homeostasis;0.0306046069717519!GO:0055064;chloride ion homeostasis;0.0306046069717519!GO:0030644;cellular chloride ion homeostasis;0.0306046069717519!GO:0003779;actin binding;0.0306046069717519!GO:0005092;GDP-dissociation inhibitor activity;0.0307099651035318!GO:0006607;NLS-bearing substrate import into nucleus;0.0308525727438078!GO:0008213;protein amino acid alkylation;0.031802234542355!GO:0006479;protein amino acid methylation;0.031802234542355!GO:0001540;beta-amyloid binding;0.0323492697366935!GO:0003711;transcription elongation regulator activity;0.0323869503272829!GO:0007050;cell cycle arrest;0.0330443885095488!GO:0043681;protein import into mitochondrion;0.0331949444803383!GO:0006366;transcription from RNA polymerase II promoter;0.0333858044511674!GO:0031114;regulation of microtubule depolymerization;0.0336921662936989!GO:0007026;negative regulation of microtubule depolymerization;0.0336921662936989!GO:0051287;NAD binding;0.0337548074065948!GO:0003899;DNA-directed RNA polymerase activity;0.0340700099018305!GO:0060052;neurofilament cytoskeleton organization and biogenesis;0.0343260410239228!GO:0016584;nucleosome positioning;0.0344405330553487!GO:0046467;membrane lipid biosynthetic process;0.0351903110662516!GO:0005868;cytoplasmic dynein complex;0.035561335910479!GO:0005832;chaperonin-containing T-complex;0.0355799040491684!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0357572800663376!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0361300962516773!GO:0051789;response to protein stimulus;0.0363528699658134!GO:0006986;response to unfolded protein;0.0363528699658134!GO:0051129;negative regulation of cellular component organization and biogenesis;0.0363772510554047!GO:0005637;nuclear inner membrane;0.0371436029979805!GO:0030911;TPR domain binding;0.0376924402106267!GO:0007021;tubulin folding;0.0384538673090293!GO:0008038;neuron recognition;0.039662687742164!GO:0001558;regulation of cell growth;0.039662687742164!GO:0030295;protein kinase activator activity;0.039756673700682!GO:0005802;trans-Golgi network;0.03977737283!GO:0006611;protein export from nucleus;0.0432710963306319!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0432710963306319!GO:0032594;protein transport within lipid bilayer;0.0432710963306319!GO:0032907;transforming growth factor-beta3 production;0.0432710963306319!GO:0032596;protein transport into lipid raft;0.0432710963306319!GO:0032910;regulation of transforming growth factor-beta3 production;0.0432710963306319!GO:0032595;B cell receptor transport within lipid bilayer;0.0432710963306319!GO:0033606;chemokine receptor transport within lipid bilayer;0.0432710963306319!GO:0032600;chemokine receptor transport out of lipid raft;0.0432710963306319!GO:0032599;protein transport out of lipid raft;0.0432710963306319!GO:0032597;B cell receptor transport into lipid raft;0.0432710963306319!GO:0032913;negative regulation of transforming growth factor-beta3 production;0.0432710963306319!GO:0040029;regulation of gene expression, epigenetic;0.0432710963306319!GO:0030663;COPI coated vesicle membrane;0.0462398049749001!GO:0030126;COPI vesicle coat;0.0462398049749001!GO:0004683;calmodulin-dependent protein kinase activity;0.0469070197884724!GO:0042734;presynaptic membrane;0.0475271434545416!GO:0050178;phenylpyruvate tautomerase activity;0.0475940940866128!GO:0005813;centrosome;0.0478356766184851!GO:0007169;transmembrane receptor protein tyrosine kinase signaling pathway;0.0481914010810682!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0489059890527775!GO:0015002;heme-copper terminal oxidase activity;0.0489059890527775!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0489059890527775!GO:0004129;cytochrome-c oxidase activity;0.0489059890527775!GO:0032011;ARF protein signal transduction;0.0493535007650716!GO:0032012;regulation of ARF protein signal transduction;0.0493535007650716 | |||
|sample_id=10085 | |||
|sample_note= | |||
|sample_sex=mixed | |||
|sample_species=Human (Homo sapiens) | |||
|sample_strain= | |||
|sample_tissue=brain | |||
|top_motifs=PRRX1,2:3.95610482654;AHR_ARNT_ARNT2:3.77680727594;MED-1{core}:3.56145725108;EGR1..3:3.46124850847;MZF1:3.44723065212;NKX2-3_NKX2-5:3.26769367908;ZFP161:3.20444606673;TFAP2B:3.10931915151;REST:3.00295503641;SOX2:2.93857957705;NHLH1,2:2.85412819577;POU3F1..4:2.76152717285;MTE{core}:2.75243066235;RFX1:2.70554459517;BREu{core}:2.64457546405;DBP:2.5465968791;FOXM1:2.46429329709;MTF1:2.45801796611;POU5F1:2.44151334796;RREB1:2.43414252673;RORA:2.38505915199;OCT4_SOX2{dimer}:2.31570933684;ATF2:2.30679020141;GTF2I:2.3035171723;POU6F1:2.28919317512;PATZ1:2.2639514878;ZBTB6:2.19720085871;CUX2:2.15864400641;POU1F1:2.09448664256;SOX{8,9,10}:2.07505196093;PRDM1:2.05069559234;PAX6:2.00509978249;TFDP1:1.89669885023;HOX{A4,D4}:1.88908536381;JUN:1.82886994287;MYFfamily:1.82320943388;GCM1,2:1.81668215982;SMAD1..7,9:1.78853176296;LEF1_TCF7_TCF7L1,2:1.76831634318;HIC1:1.76630883149;NANOG:1.76385169826;MAZ:1.75523744214;SOX17:1.75166968858;ZNF423:1.75127510391;CDC5L:1.74934158331;ZIC1..3:1.74451260722;ADNP_IRX_SIX_ZHX:1.73766085771;GTF2A1,2:1.66160410258;LMO2:1.63331119592;FOXL1:1.55599332602;GFI1B:1.52422570087;T:1.49057279666;TGIF1:1.38618690591;GZF1:1.37724696484;ZNF384:1.34777684247;NKX6-1,2:1.34733695262;SOX5:1.33245337094;HMGA1,2:1.29073716101;PAX5:1.1998650529;LHX3,4:1.17216636243;GFI1:1.14920967933;PAX8:1.12633213486;ARID5B:1.10887576554;RFX2..5_RFXANK_RFXAP:1.04200405147;NRF1:1.04167574767;HAND1,2:1.02641277522;ONECUT1,2:1.01917637243;HOXA9_MEIS1:1.00554049968;MAFB:0.99383469704;VSX1,2:0.993367961794;MYOD1:0.946908703029;FOXP1:0.921964069821;IKZF2:0.842105199019;KLF4:0.787417572377;PAX3,7:0.770354024509;RBPJ:0.761885608996;CRX:0.738003963873;TOPORS:0.737057253089;BPTF:0.704690268718;ESRRA:0.682335901555;FOXD3:0.653975266174;GATA4:0.593582162263;ZNF143:0.571851620382;FOXP3:0.544793444097;TBP:0.496469613449;XCPE1{core}:0.479371341479;PAX1,9:0.44099586997;MEF2{A,B,C,D}:0.425994338625;SP1:0.386411498309;PBX1:0.295724632107;NR3C1:0.295491244531;ZNF238:0.24473368837;ATF4:0.230122776129;POU2F1..3:0.224680860151;GATA6:0.219666530527;FOX{D1,D2}:0.210259938408;EP300:0.197015157643;EVI1:0.172834966856;PITX1..3:0.15998414231;EBF1:0.117777697793;AIRE:0.0457282198876;PDX1:0.038277534813;YY1:0.037378242311;FOXQ1:-0.0133448454378;NKX3-2:-0.0292729431849;ZEB1:-0.0386868398021;XBP1:-0.0464487728116;HNF1A:-0.0691298470405;TEF:-0.106745604153;FOXA2:-0.118710199608;ATF5_CREB3:-0.121206665394;STAT1,3:-0.152675483786;FOX{F1,F2,J1}:-0.197840320115;NFY{A,B,C}:-0.259340448228;UFEwm:-0.283772139997;AR:-0.329459435427;PAX2:-0.329476979066;NFIL3:-0.340582938093;NFIX:-0.343731013709;PAX4:-0.346802576034;STAT5{A,B}:-0.356598095368;bHLH_family:-0.378455976563;SNAI1..3:-0.402939188022;CEBPA,B_DDIT3:-0.410802907921;NFATC1..3:-0.438813546512;NR1H4:-0.447698453534;HNF4A_NR2F1,2:-0.456560338668;TLX2:-0.462231911503;ALX1:-0.466102364317;HMX1:-0.485194246407;ZBTB16:-0.510848887296;TFAP2{A,C}:-0.518083624134;MYBL2:-0.534447342978;NFE2L2:-0.538832314156;HOX{A6,A7,B6,B7}:-0.550200627517;STAT2,4,6:-0.562824151399;ZNF148:-0.572598378231;SPIB:-0.593746176418;RUNX1..3:-0.614783847482;SREBF1,2:-0.628546915445;CREB1:-0.640207815181;DMAP1_NCOR{1,2}_SMARC:-0.651648185518;TLX1..3_NFIC{dimer}:-0.664763417396;HOX{A5,B5}:-0.679358656021;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.691585439533;FOSL2:-0.710289625599;HBP1_HMGB_SSRP1_UBTF:-0.720882876828;CDX1,2,4:-0.730763901346;FOS_FOS{B,L1}_JUN{B,D}:-0.759254220749;TEAD1:-0.785185143745;TP53:-0.786230069919;FOX{I1,J2}:-0.802230806331;NKX3-1:-0.805997921343;NANOG{mouse}:-0.816826086218;HES1:-0.817927593293;EN1,2:-0.821002237718;BACH2:-0.822710864246;TFCP2:-0.825369383453;TBX4,5:-0.828822320929;NFKB1_REL_RELA:-0.833250611051;MYB:-0.851878106625;ETS1,2:-0.86609674203;ATF6:-0.878140036422;E2F1..5:-0.926825440992;SPI1:-0.935761442497;IKZF1:-0.944202504883;GLI1..3:-0.983412140346;FOXO1,3,4:-0.988582410801;NFE2:-1.00990027363;TFAP4:-1.02588416172;HLF:-1.08595737291;NR5A1,2:-1.13377269446;PPARG:-1.14213900692;RXR{A,B,G}:-1.16195881523;IRF7:-1.1627455097;SPZ1:-1.16798192162;NKX2-1,4:-1.17130431354;ESR1:-1.17440715593;IRF1,2:-1.22085900684;FOXN1:-1.32045520082;SRF:-1.39206037447;HIF1A:-1.40024752585;ALX4:-1.44522267752;RXRA_VDR{dimer}:-1.44801590919;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.46599041477;NFE2L1:-1.49877186524;TAL1_TCF{3,4,12}:-1.50345720284;ELK1,4_GABP{A,B1}:-1.59487109503;NR6A1:-1.61105175912;HSF1,2:-1.70610297225;NKX2-2,8:-2.20577222179;ELF1,2,4:-2.48153109579 | |||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10085-102B4;search_select_hide=table117:FF:10085-102B4 | |||
}} | }} | ||
Latest revision as of 12:21, 3 June 2020
| Name: | brain, fetal, pool1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11797 |
| Sample type: | tissues |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11797
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11797
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0385 |
| 10 | 10 | 0.0264 |
| 100 | 100 | 0.327 |
| 101 | 101 | 0.991 |
| 102 | 102 | 0.631 |
| 103 | 103 | 0.123 |
| 104 | 104 | 0.174 |
| 105 | 105 | 0.413 |
| 106 | 106 | 0.0677 |
| 107 | 107 | 0.134 |
| 108 | 108 | 0.804 |
| 109 | 109 | 8.23403e-4 |
| 11 | 11 | 0.0278 |
| 110 | 110 | 0.113 |
| 111 | 111 | 0.075 |
| 112 | 112 | 0.356 |
| 113 | 113 | 0.451 |
| 114 | 114 | 0.047 |
| 115 | 115 | 0.85 |
| 116 | 116 | 0.218 |
| 117 | 117 | 0.00655 |
| 118 | 118 | 0.0861 |
| 119 | 119 | 0.279 |
| 12 | 12 | 0.796 |
| 120 | 120 | 0.235 |
| 121 | 121 | 0.223 |
| 122 | 122 | 0.68 |
| 123 | 123 | 0.419 |
| 124 | 124 | 0.25 |
| 125 | 125 | 0.526 |
| 126 | 126 | 0.00179 |
| 127 | 127 | 0.573 |
| 128 | 128 | 0.251 |
| 129 | 129 | 0.72 |
| 13 | 13 | 7.62631e-4 |
| 130 | 130 | 0.277 |
| 131 | 131 | 0.727 |
| 132 | 132 | 0.562 |
| 133 | 133 | 0.0101 |
| 134 | 134 | 0.606 |
| 135 | 135 | 0.294 |
| 136 | 136 | 0.00214 |
| 137 | 137 | 0.607 |
| 138 | 138 | 0.927 |
| 139 | 139 | 0.137 |
| 14 | 14 | 0.818 |
| 140 | 140 | 0.423 |
| 141 | 141 | 0.342 |
| 142 | 142 | 0.435 |
| 143 | 143 | 0.0442 |
| 144 | 144 | 0.746 |
| 145 | 145 | 0.426 |
| 146 | 146 | 0.758 |
| 147 | 147 | 0.86 |
| 148 | 148 | 0.127 |
| 149 | 149 | 0.199 |
| 15 | 15 | 0.0492 |
| 150 | 150 | 0.193 |
| 151 | 151 | 0.52 |
| 152 | 152 | 0.0878 |
| 153 | 153 | 0.619 |
| 154 | 154 | 0.508 |
| 155 | 155 | 0.467 |
| 156 | 156 | 0.865 |
| 157 | 157 | 0.13 |
| 158 | 158 | 0.636 |
| 159 | 159 | 0.971 |
| 16 | 16 | 0.0223 |
| 160 | 160 | 0.36 |
| 161 | 161 | 0.0956 |
| 162 | 162 | 0.291 |
| 163 | 163 | 0.82 |
| 164 | 164 | 0.0145 |
| 165 | 165 | 0.0372 |
| 166 | 166 | 0.942 |
| 167 | 167 | 0.156 |
| 168 | 168 | 0.277 |
| 169 | 169 | 0.00656 |
| 17 | 17 | 0.21 |
| 18 | 18 | 0.452 |
| 19 | 19 | 0.147 |
| 2 | 2 | 0.78 |
| 20 | 20 | 0.216 |
| 21 | 21 | 0.103 |
| 22 | 22 | 0.154 |
| 23 | 23 | 0.358 |
| 24 | 24 | 0.0526 |
| 25 | 25 | 0.372 |
| 26 | 26 | 0.0102 |
| 27 | 27 | 0.747 |
| 28 | 28 | 0.456 |
| 29 | 29 | 0.00766 |
| 3 | 3 | 0.0171 |
| 30 | 30 | 0.735 |
| 31 | 31 | 0.933 |
| 32 | 32 | 0.0333 |
| 33 | 33 | 0.0964 |
| 34 | 34 | 0.991 |
| 35 | 35 | 0.659 |
| 36 | 36 | 0.228 |
| 37 | 37 | 0.0173 |
| 38 | 38 | 0.291 |
| 39 | 39 | 0.258 |
| 4 | 4 | 0.715 |
| 40 | 40 | 0.0877 |
| 41 | 41 | 0.524 |
| 42 | 42 | 0.163 |
| 43 | 43 | 0.147 |
| 44 | 44 | 0.109 |
| 45 | 45 | 0.86 |
| 46 | 46 | 0.202 |
| 47 | 47 | 0.0616 |
| 48 | 48 | 0.0452 |
| 49 | 49 | 0.266 |
| 5 | 5 | 0.21 |
| 50 | 50 | 0.364 |
| 51 | 51 | 0.494 |
| 52 | 52 | 0.495 |
| 53 | 53 | 0.772 |
| 54 | 54 | 0.331 |
| 55 | 55 | 0.205 |
| 56 | 56 | 0.439 |
| 57 | 57 | 0.395 |
| 58 | 58 | 0.181 |
| 59 | 59 | 0.0968 |
| 6 | 6 | 0.856 |
| 60 | 60 | 0.0624 |
| 61 | 61 | 0.0405 |
| 62 | 62 | 0.129 |
| 63 | 63 | 0.155 |
| 64 | 64 | 0.39 |
| 65 | 65 | 0.394 |
| 66 | 66 | 0.459 |
| 67 | 67 | 0.287 |
| 68 | 68 | 0.169 |
| 69 | 69 | 0.866 |
| 7 | 7 | 0.0322 |
| 70 | 70 | 0.00577 |
| 71 | 71 | 0.00653 |
| 72 | 72 | 0.218 |
| 73 | 73 | 0.024 |
| 74 | 74 | 0.495 |
| 75 | 75 | 0.0227 |
| 76 | 76 | 0.313 |
| 77 | 77 | 0.196 |
| 78 | 78 | 7.02851e-4 |
| 79 | 79 | 0.357 |
| 8 | 8 | 0.117 |
| 80 | 80 | 0.597 |
| 81 | 81 | 0.648 |
| 82 | 82 | 0.607 |
| 83 | 83 | 0.0836 |
| 84 | 84 | 0.692 |
| 85 | 85 | 0.273 |
| 86 | 86 | 0.199 |
| 87 | 87 | 0.0027 |
| 88 | 88 | 0.621 |
| 89 | 89 | 0.247 |
| 9 | 9 | 0.545 |
| 90 | 90 | 0.0579 |
| 91 | 91 | 0.641 |
| 92 | 92 | 0.541 |
| 93 | 93 | 0.283 |
| 94 | 94 | 0.269 |
| 95 | 95 | 0.00617 |
| 96 | 96 | 0.657 |
| 97 | 97 | 0.862 |
| 98 | 98 | 0.338 |
| 99 | 99 | 0.945 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11797
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0010085 human brain - fetal sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0000955 (brain)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0010085 (human brain - fetal sample)
0000999 (fetal tissue sample)
0000004 (tissue sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0006238 (future brain)
UBERON:0010316 (germ layer / neural crest)
