FFCP PHASE1:Hg19::chr1:43824761..43824772,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr1:43824761..43824772,+ to FFCP PHASE1:Hg19::chr1:43824761..43824772,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=991 | |EntrezGene=991 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1723 | |HGNC=1723 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=69bp_to_uc001ciy.2_5end | |||
|cluster_id=chr1:43824761..43824772,+ | |||
|description=CAGE_peak_5_at_CDC20_5end | |||
|id=chr1:43824761..43824772,+ | |||
|ontology_enrichment_celltype=CL:0000548!7.03e-20!679;CL:0000004!7.03e-20!679;CL:0000255!7.03e-20!679;CL:0000012!3.16e-19!682;CL:0002321!7.50e-17!248;CL:0000220!4.45e-16!246;CL:0000066!4.86e-16!254;CL:0000003!1.23e-12!722;CL:0000055!2.94e-12!180;CL:0000144!1.39e-10!625;CL:0000222!5.87e-09!119;CL:0002371!5.73e-08!591;CL:0000063!7.32e-08!578;CL:0000076!1.01e-07!62;CL:0000213!6.80e-07!57;CL:0000215!6.80e-07!57 | |||
|ontology_enrichment_celltype_v019=CL:1000449;1.72e-09;15!CL:0002681;3.63e-08;12!CL:0002584;3.63e-08;12!CL:1000497;4.83e-08;17!CL:0002518;4.83e-08;17 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,5.23e-11,250;CL:0000213,6.15e-10,58;CL:0000215,6.15e-10,58;CL:0000222,6.74e-10,121;CL:1000449,1.50e-09,15;CL:0002681,3.71e-08,12;CL:0002584,3.71e-08,12;CL:1000497,4.28e-08,17;CL:0002518,4.28e-08,17;CL:0002078,8.04e-08,45;CL:0000115,9.00e-08,36;CL:0002322,4.57e-07,5 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!1.09e-09!235;DOID:14566!3.72e-09!239;DOID:0050687!1.08e-07!143;DOID:305!1.69e-07!106 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000487!3.52e-07!22;UBERON:0003104!5.42e-07!238;UBERON:0009142!5.42e-07!238 | |||
|ontology_enrichment_uberon_v019=UBERON:0006555;1.72e-09;15!UBERON:0004819;1.72e-09;15!UBERON:0001285;1.72e-09;15!UBERON:0007684;1.72e-09;15!UBERON:0000353;2.08e-09;15!UBERON:0002113;1.11e-08;24!UBERON:0011143;1.11e-08;24!UBERON:0001225;3.63e-08;12!UBERON:0008987;3.63e-08;12!UBERON:0000487;1.41e-07;22!UBERON:0001851;1.55e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004211,1.50e-09,15;UBERON:0009773,1.50e-09,15;UBERON:0001231,1.50e-09,15;UBERON:0001285,1.50e-09,15;UBERON:0007684,1.50e-09,15;UBERON:0004208,1.50e-09,15;UBERON:0000353,1.72e-09,15;UBERON:0006555,8.92e-09,16;UBERON:0004819,8.92e-09,16;UBERON:0001225,3.71e-08,12;UBERON:0008987,3.71e-08,12;UBERON:0002113,6.63e-08,26;UBERON:0003918,6.63e-08,26;UBERON:0011143,6.63e-08,26;UBERON:0005095,6.63e-08,26;UBERON:0007687,6.63e-08,26;UBERON:0000487,1.37e-07,22;UBERON:0001851,2.29e-07,15;UBERON:0000058,6.01e-07,19 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,1.47440361900905,3.48900583986214,0.655324116390517,1.84636884759917,0,0,0,0,0,0,1.35433163884467,1.22400414746552,0.626909442956176,0.286235987131057,2.87436292653057,2.00868223351684,0.916960868975415,0.985207073399349,0.865818594450472,0,0,0,0.919421224478927,1.204823675113,0.739508020333575,0.309868802321207,0.142169232487422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111410456885174,0,0,0,0,0,0.328875809207352,0.276350017785848,0,0,0,0,0.113309342697566,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0.639312809217652,1.80719576192283,0,0.144846518960824,0,0,0.850813354476611,0.665188192387692,1.22968699970376,0,0.728590576585084,1.48313777113772,0,0,0,0,0,0,1.19257444420023,0.860234595106124,0.347140501607594,1.13061588384802,0,1.37559020970034,1.67195973229448,0,0,0,0.805658634218294,0.760272105718513,0.732186172644509,0.367663080345869,0,1.3394959242612,1.57170560838319,2.0270066486998,0,1.89853131913626,1.28241220751285,0,0,0.872188104285069,0,0.379891534993739,0,0.286836620748814,1.77334191099179,0,0,0,0.311211035399766,0.67355336034844,0.653847612453835,0.454072282934794,0,3.04617861383936,0,0,0.298897361103602,1.05691048779388,1.45685649931318,1.12360645361799,0.204154171254893,0.982674538494144,0.413303124703062,0,0.247266929278557,0.910161361938026,1.43723628363248,1.0100166837244,1.25118519871964,0.831192346452549,0,0.919463387397059,0.300476117813194,1.36118619792025,2.51145489964407,0.213557388818567,0,2.70081986475962,0.309157587715317,0,0.18611685633159,2.53164498361899,1.36411807225678,1.7670364197088,0.0920498986422993,0,1.42003837006646,1.5112814734146,1.69560592310488,0,0,1.43402297694502,1.58565817968474,1.59035721985782,1.51052125730374,1.65857688024593,1.51392510525377,1.45990943630332,3.12899064659632,1.28648187638577,1.38134921352481,0,0,0.591534000199219,0.168584690078102,0.723033089650446,0.441175890929576,0.653638332277218,0.474541238222193,0.539325232640658,0.392442930250692,0.38474715694639,1.4763109092493,2.80483547606892,0.4115740113314,0,0,0,0,0,0.122988438543114,0.343135620597051,0.109750285408626,1.1240175325762,0.402115889646523,0.370353780634118,4.56131627434455,3.11980435583874,2.88662684050547,0.34779121492523,0.117408694235822,1.44366447761074,0,0.190254152234598,0.790204397959275,0,0,0,0.148631162288728,0,0,0.141775097242386,1.43293636324557,0.871901815541886,2.68367875415648,0,0.088048434013226,0,0,0.12624243342638,0,0.763976851116555,1.17217447210047,0,0.102827492703324,1.50171528921959,0,1.34557301214433,1.30788020649984,1.24675085895615,0,0,0.845302752556,0.531876233169741,1.04007436911366,1.02882949704857,2.83698264046557,3.46348832720929,0,0,2.46972101034231,0.65147236858747,0,1.58390374586686,0,0,0,0,0,0,0.239624855491583,1.14861935834114,1.42636905040718,0.434343920002738,0.821905290201534,2.14873155887875,0.112085143993527,0,0,0,0,0,0,0.502548796003046,0,0,0,0,0,0.500170521059677,0.271265023699736,0,0.892144943985809,0.157702415033935,0.702848489956279,0,0,0,1.32845119707087,0.737476674166813,0.434418072340414,0.195801157462741,0.343143423810856,0,0,0,0,0,1.5119514666484,0,0.153461973288062,0.280660094433074,0,0,0,0,2.00472601943452,0.177561725313127,1.14978018419333,1.03850885836724,0.697262270759755,0.362578348774867,0,0,1.95184561879831,0.910455840033585,0.262248829918848,2.25599806453706,0.231046011313244,3.92174884588428,1.46139224653261,0.316654886678627,1.13733384070897,1.70093705276516,1.94324324491925,0,1.62567862526312,1.00337954770971,1.27438136522519,0.831076008928724,4.02974558499921,0.438519753291869,0,0.512900250232778,0,0,0,0.27470839445503,0.082509499920588,0,0,3.21367859688319,0,1.23238893691716,1.07452572308291,1.10269257987624,0.859361958946189,1.59518363305651,1.19317278382541,0.267096106940212,0,0.192190067365106,0.127612712494584,0,0,0,0.6970372701606,0,0.532306030317022,0,0.18532421910392,0.429374660225974,1.116475108079,0.632758849437452,0,1.27948895655667,0,0,0,0.359744915166629,0.274537029736055,0.942499218765491,0.404364963146632,0,0,2.43816869544795,0,1.05650146756755,0.818999468447914,0.282810863907425,0,1.10273068709225,0,0,0,0,0.608731130888112,0.6196469961995,1.40847801266121,2.15117028306077,0,0,2.48332744849418,0,0,1.89736586882858,1.39973888097993,0.48111056362756,0.670302275535787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.20472213382419,1.92495971052672,2.94048259177238,0.185803175125719,0,0.284567373393656,0.159426272728822,0.798317485731266,0,0,0,0,0.228234679033192,0.156679895773023,0,0.169291777801603,0,0.201799707191048,0,0,1.84344458585075,1.3420566473545,1.50164227540718,0.19538809540204,1.11362469558097,2.46174797895425,2.43410110628385,0.33307196799782,1.4098700508785,0,0,0.242721043499027,0.891547074219827,2.84136146806413,0,0.296964680832639,0,0,0,0,0.494411622680279,0.211125408127993,0,0,0.251932747854276,0.613612095012929,0.123084805461069,0,0.808815160325942,0,0,0,0,3.33410970433911,0,0,0,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| ||
|short_description=p5@CDC20 | |||
}} | }} |
Latest revision as of 04:22, 18 September 2015
Short description: | p5@CDC20 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_CDC20_5end |
Coexpression cluster: | NA |
Association with transcript: | 69bp_to_uc001ciy.2_5end |
EntrezGene: | CDC20 |
HGNC: | 1723 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 5.23e-11 | 250 |
lining cell | 6.15e-10 | 58 |
barrier cell | 6.15e-10 | 58 |
mesodermal cell | 6.74e-10 | 121 |
epithelial cell of nephron | 1.50e-09 | 15 |
kidney cortical cell | 3.71e-08 | 12 |
renal cortical epithelial cell | 3.71e-08 | 12 |
kidney cell | 4.28e-08 | 17 |
kidney epithelial cell | 4.28e-08 | 17 |
meso-epithelial cell | 8.04e-08 | 45 |
endothelial cell | 9.00e-08 | 36 |
embryonic stem cell | 4.57e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
nephron epithelium | 1.50e-09 | 15 |
renal tubule | 1.50e-09 | 15 |
nephron tubule | 1.50e-09 | 15 |
nephron | 1.50e-09 | 15 |
uriniferous tubule | 1.50e-09 | 15 |
nephrogenic mesenchyme | 1.50e-09 | 15 |
parenchyma | 1.72e-09 | 15 |
excretory tube | 8.92e-09 | 16 |
kidney epithelium | 8.92e-09 | 16 |
cortex of kidney | 3.71e-08 | 12 |
renal parenchyma | 3.71e-08 | 12 |
kidney | 6.63e-08 | 26 |
kidney mesenchyme | 6.63e-08 | 26 |
upper urinary tract | 6.63e-08 | 26 |
kidney rudiment | 6.63e-08 | 26 |
kidney field | 6.63e-08 | 26 |
simple squamous epithelium | 1.37e-07 | 22 |
cortex | 2.29e-07 | 15 |
duct | 6.01e-07 | 19 |