FFCP PHASE1:Hg19::chr16:12995468..12995497,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr16:12995468..12995497,+ to FFCP PHASE1:Hg19::chr16:12995468..12995497,+: NSchange) |
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(9 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=729993 | |EntrezGene=729993 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=37231 | |HGNC=37231 | ||
|TSSclassifier=strong | |||
|UniProt=B4DS77 | |UniProt=B4DS77 | ||
|association_with_transcript=0bp_to_ENST00000558318,ENST00000558583,NM_001145204,NM_001145205,uc002dcd.2,uc010uyy.1_5end | |||
|cluster_id=chr16:12995468..12995497,+ | |||
|description=CAGE_peak_1_at_SHISA9_5end | |||
|id=chr16:12995468..12995497,+ | |||
|ontology_enrichment_celltype=CL:0002319!2.04e-08!25;CL:0000047!8.83e-07!8 | |||
|ontology_enrichment_celltype_v019=CL:0002319;1.10e-11;25!CL:1000507;2.05e-10;10!CL:1000494;2.05e-10;10!CL:1000497;1.22e-07;17!CL:0002518;1.22e-07;17!CL:1000449;1.91e-07;15!CL:0000540;3.57e-07;6!CL:0000404;3.57e-07;6!CL:0002322;9.19e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,9.35e-12,25;CL:1000507,2.25e-10,10;CL:1000494,2.25e-10,10;CL:0000047,5.25e-09,8;CL:0000133,2.67e-08,59;CL:1000497,1.32e-07,17;CL:0002518,1.32e-07,17;CL:1000449,2.11e-07,15;CL:0000540,2.53e-07,6;CL:0000031,2.53e-07,6;CL:0000404,2.53e-07,6;CL:0002322,9.99e-07,5 | |||
|ontology_enrichment_development_v019=UBERON:0006601;3.16e-12;82!CL:0000031;3.57e-07;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!2.72e-49!82;UBERON:0005743!7.02e-47!86;UBERON:0000073!1.26e-45!94;UBERON:0001016!1.26e-45!94;UBERON:0001049!4.70e-41!57;UBERON:0005068!4.70e-41!57;UBERON:0006241!4.70e-41!57;UBERON:0007135!4.70e-41!57;UBERON:0000955!1.45e-40!69;UBERON:0006238!1.45e-40!69;UBERON:0002616!3.95e-39!59;UBERON:0004121!1.10e-36!169;UBERON:0000924!3.92e-36!173;UBERON:0006601!3.92e-36!173;UBERON:0002780!1.16e-34!41;UBERON:0001890!1.16e-34!41;UBERON:0006240!1.16e-34!41;UBERON:0003075!1.28e-34!86;UBERON:0007284!1.28e-34!86;UBERON:0002346!2.13e-33!90;UBERON:0003080!2.15e-33!42;UBERON:0000033!4.21e-31!123;UBERON:0000153!2.05e-30!129;UBERON:0007811!2.05e-30!129;UBERON:0002020!7.24e-30!34;UBERON:0003528!7.24e-30!34;UBERON:0001893!9.73e-30!34;UBERON:0003056!1.78e-29!61;UBERON:0002791!6.65e-29!33;UBERON:0001869!2.10e-28!32;UBERON:0007023!4.87e-23!115;UBERON:0000956!2.56e-22!25;UBERON:0000203!2.56e-22!25;UBERON:0002619!1.74e-20!22;UBERON:0000475!3.97e-19!365;UBERON:0001950!9.41e-19!20;UBERON:0000064!2.37e-14!219;UBERON:0000481!2.02e-11!347;UBERON:0000468!1.54e-10!659;UBERON:0000922!9.02e-10!612;UBERON:0000483!1.84e-09!309;UBERON:0000062!2.24e-09!511;UBERON:0002420!3.50e-09!9;UBERON:0007245!3.50e-09!9;UBERON:0010009!3.50e-09!9;UBERON:0010011!3.50e-09!9;UBERON:0000454!3.50e-09!9;UBERON:0000119!4.61e-09!312;UBERON:0002308!6.01e-09!9;UBERON:0000125!6.01e-09!9;UBERON:0003076!7.28e-09!15;UBERON:0003057!7.28e-09!15;UBERON:0000025!1.51e-08!194;UBERON:0001871!3.36e-08!7;UBERON:0000489!5.93e-08!32;UBERON:0004732!6.74e-08!13;UBERON:0000923!9.20e-08!604;UBERON:0005291!9.20e-08!604;UBERON:0006598!9.20e-08!604;UBERON:0002532!9.20e-08!604;UBERON:0002050!1.16e-07!605;UBERON:0005423!1.16e-07!605;UBERON:0009663!2.36e-07!7;UBERON:0004733!3.77e-07!12;UBERON:0002028!3.77e-07!12;UBERON:0007277!3.77e-07!12;UBERON:0000467!5.11e-07!625;UBERON:0000480!6.37e-07!626;UBERON:0002113!8.17e-07!27;UBERON:0003918!8.17e-07!27;UBERON:0005095!8.17e-07!27;UBERON:0007687!8.17e-07!27 | |||
|ontology_enrichment_uberon_v019=UBERON:0003528;3.40e-36;34!UBERON:0002020;3.40e-36;34!UBERON:0001869;3.76e-36;32!UBERON:0002791;4.88e-36;32!UBERON:0001893;6.97e-36;34!UBERON:0002780;5.85e-35;41!UBERON:0001890;5.85e-35;41!UBERON:0000956;3.48e-31;25!UBERON:0000203;3.48e-31;25!UBERON:0000073;4.91e-31;53!UBERON:0002616;4.91e-31;53!UBERON:0002619;1.49e-28;22!UBERON:0001950;4.42e-26;20!UBERON:0000955;7.81e-23;68!UBERON:0001017;3.65e-22;75!UBERON:0001016;1.11e-19;83!UBERON:0002420;1.91e-12;9!UBERON:0007245;1.91e-12;9!UBERON:0010009;1.91e-12;9!UBERON:0010011;1.91e-12;9!UBERON:0000454;1.91e-12;9!UBERON:0000125;4.50e-12;9!UBERON:0002308;4.50e-12;9!UBERON:0000489;5.80e-11;29!UBERON:0004211;2.05e-10;10!UBERON:0009773;2.05e-10;10!UBERON:0001231;2.05e-10;10!UBERON:0004810;2.05e-10;10!UBERON:0002113;5.66e-10;24!UBERON:0011143;5.66e-10;24!UBERON:0009663;7.58e-10;7!UBERON:0001871;8.21e-10;6!UBERON:0004732;1.47e-09;13!UBERON:0000200;9.08e-09;6!UBERON:0004733;1.55e-08;12!UBERON:0002028;1.55e-08;12!UBERON:0001894;2.37e-08;7!UBERON:0000349;4.94e-08;5!UBERON:0002298;7.04e-08;6!UBERON:0010314;1.56e-07;132!UBERON:0001872;1.82e-07;5!UBERON:0006555;1.91e-07;15!UBERON:0004819;1.91e-07;15!UBERON:0001285;1.91e-07;15!UBERON:0007684;1.91e-07;15!UBERON:0007023;2.77e-07;114!UBERON:0006554;4.23e-07;30!UBERON:0001008;4.23e-07;30!UBERON:0000369;4.52e-07;4!UBERON:0002435;4.52e-07;4!UBERON:0000204;4.52e-07;4!UBERON:0002021;4.86e-07;5!UBERON:0011216;5.18e-07;132!UBERON:0004121;5.66e-07;165 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.38e-63,81;UBERON:0001016,5.92e-59,89;UBERON:0001049,2.50e-58,56;UBERON:0005068,2.50e-58,56;UBERON:0006241,2.50e-58,56;UBERON:0007135,2.50e-58,56;UBERON:0000073,1.18e-55,53;UBERON:0002616,1.18e-55,53;UBERON:0003075,2.50e-54,82;UBERON:0007284,2.50e-54,82;UBERON:0002346,5.80e-53,86;UBERON:0000955,1.25e-52,68;UBERON:0006238,1.25e-52,68;UBERON:0010371,6.60e-50,104;UBERON:0002780,8.03e-49,41;UBERON:0001890,8.03e-49,41;UBERON:0003080,8.03e-49,41;UBERON:0006240,8.03e-49,41;UBERON:0004121,2.57e-46,171;UBERON:0000924,2.57e-46,171;UBERON:0006601,2.57e-46,171;UBERON:0003056,2.89e-46,61;UBERON:0003528,5.85e-42,34;UBERON:0002020,5.85e-42,34;UBERON:0001893,8.93e-42,34;UBERON:0001869,7.23e-40,32;UBERON:0002791,1.35e-39,32;UBERON:0010314,4.56e-33,132;UBERON:0000956,3.66e-31,25;UBERON:0000203,3.66e-31,25;UBERON:0002619,1.52e-28,22;UBERON:0001950,4.55e-26,20;UBERON:0011216,1.29e-20,223;UBERON:0007023,1.07e-19,114;UBERON:0000025,2.61e-14,192;UBERON:0000483,4.83e-14,306;UBERON:0000119,1.18e-13,309;UBERON:0002420,2.03e-12,9;UBERON:0007245,2.03e-12,9;UBERON:0010009,2.03e-12,9;UBERON:0010011,2.03e-12,9;UBERON:0000454,2.03e-12,9;UBERON:0000125,4.40e-12,9;UBERON:0002308,4.40e-12,9;UBERON:0000922,1.82e-11,592;UBERON:0003076,6.44e-11,15;UBERON:0003057,6.44e-11,15;UBERON:0004111,8.76e-11,240;UBERON:0004810,2.25e-10,10;UBERON:0000489,6.10e-10,31;UBERON:0009663,8.07e-10,7;UBERON:0001871,8.63e-10,6;UBERON:0004732,1.51e-09,13;UBERON:0005423,2.22e-09,581;UBERON:0002113,6.71e-09,26;UBERON:0003918,6.71e-09,26;UBERON:0011143,6.71e-09,26;UBERON:0005095,6.71e-09,26;UBERON:0007687,6.71e-09,26;UBERON:0000200,9.60e-09,6;UBERON:0004733,1.65e-08,12;UBERON:0002028,1.65e-08,12;UBERON:0007277,1.65e-08,12;UBERON:0001894,2.47e-08,7;UBERON:0006222,2.47e-08,7;UBERON:0000349,4.88e-08,5;UBERON:0002298,6.66e-08,6;UBERON:0001872,1.83e-07,5;UBERON:0004211,2.11e-07,15;UBERON:0009773,2.11e-07,15;UBERON:0001231,2.11e-07,15;UBERON:0001285,2.11e-07,15;UBERON:0007684,2.11e-07,15;UBERON:0004208,2.11e-07,15;UBERON:0000369,4.50e-07,4;UBERON:0002435,4.50e-07,4;UBERON:0000204,4.50e-07,4;UBERON:0010082,4.50e-07,4;UBERON:0002021,4.60e-07,5;UBERON:0005085,8.60e-07,31;UBERON:0006555,8.82e-07,16;UBERON:0004819,8.82e-07,16 | |||
|phase1_expression=1.63510541343501,1.92690471501885,0.986680828671798,2.00146596706261,2.68176656656373,2.61701557230111,0,0,0,0,0,0.436882744260345,2.11013582582763,0,0,0,0,0,0,3.32426856807327,1.63200552995402,5.01527554364941,4.00730381983479,1.50561867580173,12.1776360406959,0.229240217243854,0.410502947249729,0.236132343941038,0,0,0,0,0.30120591877825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.224723484445085,0,0.320929027076094,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.795285947051099,0,8.41359872760204,6.43015252641436,17.6547919243183,3.40545596294053,0,0,0,0,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.908144565869588,0.576175924479999,0.70296429550139,0,0,0.149448680551801,0.939475989150119,4.04682360920329,2.38766371393822,1.02077085627447,2.57952066354713,0.206651562351531,0,0,0,0,0.168336113954066,0,4.98715407871529,0,0,0.150238058906597,0,0,0.213557388818567,0,0,0,0,0,0,0,0,0.0920498986422993,0,0,0,0.169560592310488,0,0,0,9.27000166584925,5.03613119621644,9.41170937243099,7.67091807113741,8.57890892977137,6.20461510428911,0,1.92972281457866,0,1.85747171212792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122988438543114,7.3774158428366,0.658501712451753,0,0,0,0,0,2.88662684050547,3.24605133930215,4.46153038096122,0,0,0,5.53143078571493,2.57545848628462,0,0,0,0,0.16798212819886,0,2.23896306757121,2.61570544662566,19.935899316591,0,0,0,0,0,0.063497894292169,0,0,0,0.822619941626588,0,0,0,0,0,0,0,0,0,0,0.771622122786426,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,18.6767885601177,5.13690806375959,26.3219615962647,0,0,0,0,2.03275699377971,7.8083912314573,3.86644406388848,2.84777651068393,1.91381625495949,0,0,0,0.12269149171914,0.500170521059677,0,0,0.178428988797162,3.31175071571263,0,0,0,0,0,0.184369168541703,0,0,0,0,0,0,0.303127571446259,9.98612637062982,4.83824469327489,0.496215615637554,0.920771839728375,0.280660094433074,0,0,0.64341568457443,1.48418066444991,0,0.532685175939381,0,0,0,0.483437798366489,0,0,0,0,0,13.5359883872224,3.85076685522074,3.13739907670742,4.38417673959782,1.26661954671451,0,0,2.15915916102139,0,1.08378575017541,3.51182841698397,20.135225570558,17.4525961875032,1.79099803777743,0,0,0,0,0,0,0,0,1.14853107599234,0,0,0.096670718292122,0,0.460511024178389,1.51620229732984,0.107420244868274,0.290033387828457,0.767039646744908,0,0,0,0.127612712494584,0,0,0,0,0,0,0,0,0,0.372158369359667,0.316379424718726,0,0,0,0,0,0,0,0.117812402345686,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0.143411352204052,0.196498082026242,0,0,0,0,0,0,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,1.81600920916704,1.92495971052672,0,0,0,0,0,0,0,0,0,0.280797178113459,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.19372242368845,0,0,16.9005100120271,23.3511231241451,1.44701316529778,0,1.26675244876796,0.796991953004279,0.828851746593443,0,0,0,0,0,0,0,0.0986434056369336,0,0,8.72399471485697,8.53466503089032,17.9652418201075,4.16684417736373,1.39935999993913,0,0,0,0,0,0,0.347249989866585,23.9150174169737,27.2547951293422,0,1.10579259931225,0.295547618953547,7.89787429754301,0,0,0.230850775511391,11.9639158639351,0,0,0,0.31900115973192,0.274792780205587,0,0,0,0,0,0,0,0,0,9.07291677470516,38.5229427255589,0,0.649165919226273,2.98578579323551,0.442287822516696,0.611030144933625,0,0,0,5.93129970229958,0,17.5698334294004,0,0,0,1.18375320854817,1.20990716048664,45.9109142445735,0.252746318513952,0,0,0,0,0.627865836814451,1.19472429772959,0,0,0,0,0,0.52418000472609,0.51595809741485,0,0,0,0.872901148395775,0,0.90392296312213,0.137041924646751,0,16.6507393363961,0.195551382734803,0.320635281006135,1.06726497369676,0,0,0.229073192331831,0.171594997861965,0,0,0,5.30026403687095,6.58997931767699,0,0,7.20504346451747,5.75002591346371,0,0,0,1.39641200636127,0.687481272035051,0,0.399358000997982,0,0,0,0,0,0,0,0,0.885847333632739,0,12.7236750369489,15.5271882967196,16.396821143432,10.7280760545842,9.55512777467126,0,0,23.9960748799197,0,2.12775409707835,2.7800931711549,0,0,0,0,0,34.3262525833912,0,0,0,0,0,0,0,0,0,8.79124103258544,12.9587949707836,0,4.9337051562167,0,0.157204305099666,0,0,0,0,0,0,0,0,0,6.59627204250984,10.6328181596038,13.178836609412,15.273293546193,5.16068276121064,7.32131740143225,5.83706187649004,5.81064266732169,0,0,0,0,0,18.8397337194073,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.521745061811734,0,0,0.406870733204662,0,0,0,0,22.0015270564734,0,0,0,0,0,10.9617602625389,0.453411851024545,0,0.734210113519403,0,1.23520578864389,0,0,0,0.337884881306145,15.3744911152768,11.3992012771296,0,12.858034562111,0,0,0,0.655219697692825,0,0,0,0,0,0,0,0,0,0,0.539124056983409,0,0.109209638192014,0,61.8593017495897,0,8.9383186875719,0,0,0,2.46873160583479,0,25.0493977876192,2.8339315265117,8.30096067097186,9.43535275507473,53.1871279027825,12.379148191095,15.9860889175533,9.99385941814081,0,0,0,0,0,0,0,0.0752103283492573,0.20170506870352,0.781514011233092,0,0,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| ||
|short_description=p1@SHISA9 | |||
}} | }} |
Latest revision as of 16:23, 24 September 2015
Short description: | p1@SHISA9 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SHISA9_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000558318, ENST00000558583, NM_001145204, NM_001145205, uc002dcd.2, uc010uyy.1_5end |
EntrezGene: | SHISA9 |
HGNC: | 37231 |
UniProt: | B4DS77 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 9.35e-12 | 25 |
kidney tubule cell | 2.25e-10 | 10 |
nephron tubule epithelial cell | 2.25e-10 | 10 |
neuronal stem cell | 5.25e-09 | 8 |
neurectodermal cell | 2.67e-08 | 59 |
kidney cell | 1.32e-07 | 17 |
kidney epithelial cell | 1.32e-07 | 17 |
epithelial cell of nephron | 2.11e-07 | 15 |
neuron | 2.53e-07 | 6 |
neuroblast | 2.53e-07 | 6 |
electrically signaling cell | 2.53e-07 | 6 |
embryonic stem cell | 9.99e-07 | 5 |