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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005873
|DRA_sample_Accession=CAGE@SAMD00005873
|accession_numbers=CAGE;DRX008244;DRR009116;DRZ000541;DRZ001926
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005873
|accession_numbers=CAGE;DRX008244;DRR009116;DRZ000541;DRZ001926;DRZ011891;DRZ013276
|accession_numbers_RNASeq=sRNA-Seq;DRX037192;DRR041558;DRZ007200
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|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0002494,CL:0000057,CL:0002548
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0002494,CL:0000057,CL:0002548
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|microRNAs=
|microRNAs=
|microRNAs_nn=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#cage;sample;11345
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11345
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10012.AGTCAA.11345
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10012.AGTCAA.11345
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#cage;sample;11345
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11345
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10012.AGTCAA.11345
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10012.AGTCAA.11345
|name=Fibroblast - Cardiac, donor2
|name=Fibroblast - Cardiac, donor2
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|profile_rnaseq=
|profile_rnaseq=
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|profile_srnaseq=SRhi10012,,,
|refex=http://refex.dbcls.jp/genelist.php?lang=en&db=human&roku_valid=1&rk[]=&order_key=score
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 80: Line 82:
|rna_tube_id=117G4
|rna_tube_id=117G4
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|rna_weight_ug=10
|rnaseq_library_id=SRhi10012.AGTCAA
|sample_age=emrbyo 21week
|sample_age=emrbyo 21week
|sample_category=primary cells
|sample_category=primary cells
Line 103: Line 106:
|top_motifs=IKZF1:1.96794455276;SRF:1.76913803398;POU3F1..4:1.62793989759;GTF2A1,2:1.62383309185;GLI1..3:1.58983106738;HOX{A5,B5}:1.38032846644;ZNF238:1.16745790634;TFAP4:1.07580503439;PPARG:1.05357018835;ZNF148:1.03281186908;HIF1A:0.991010629214;TP53:0.981940659854;EBF1:0.977661812354;SPZ1:0.952262001121;LHX3,4:0.920832345469;POU2F1..3:0.899582142628;GCM1,2:0.885929621611;DBP:0.832942730355;EN1,2:0.80115179832;SOX{8,9,10}:0.794886750047;RXRA_VDR{dimer}:0.742188797178;XCPE1{core}:0.732903562316;NFATC1..3:0.707114873231;MAFB:0.699004979619;SMAD1..7,9:0.698164334426;TLX1..3_NFIC{dimer}:0.687679032927;ONECUT1,2:0.687047586988;HSF1,2:0.64832481849;UFEwm:0.639677540735;TEAD1:0.638037629935;TFCP2:0.620561572237;ATF6:0.616239831222;HMGA1,2:0.613038718684;ZIC1..3:0.590095147132;NANOG{mouse}:0.584791947111;XBP1:0.571357893072;HOXA9_MEIS1:0.565157843244;AR:0.540068051324;PAX8:0.530066383586;TBP:0.509881519631;TAL1_TCF{3,4,12}:0.502169650324;SOX17:0.498116303178;ZNF423:0.487607523848;ZBTB6:0.472297430557;HAND1,2:0.454651211202;ESR1:0.441326220217;NR6A1:0.436689821594;NFE2L2:0.432794117637;HLF:0.375861904735;LEF1_TCF7_TCF7L1,2:0.349131161956;GTF2I:0.338788736662;NANOG:0.336472791537;CEBPA,B_DDIT3:0.317178761661;GFI1B:0.304643876064;MYBL2:0.302668227928;NKX2-2,8:0.297148294646;PAX3,7:0.29329695083;TFAP2{A,C}:0.280219392731;CDC5L:0.278424811288;BACH2:0.276848741351;STAT2,4,6:0.273159759785;HES1:0.267993860727;RXR{A,B,G}:0.260275025752;MTE{core}:0.254498047508;HMX1:0.231254792314;NFE2L1:0.21685504017;FOXL1:0.209492962313;NR5A1,2:0.186233866056;NFKB1_REL_RELA:0.180072411696;FOS_FOS{B,L1}_JUN{B,D}:0.173120013696;ADNP_IRX_SIX_ZHX:0.163751729199;ALX4:0.15322863289;PBX1:0.144466964375;SOX2:0.14437776282;TFAP2B:0.134644093281;STAT5{A,B}:0.133259290253;REST:0.112969174679;MEF2{A,B,C,D}:0.112879378166;KLF4:0.102288513801;NFE2:0.0904099674931;NKX3-2:0.089726786906;PAX2:0.076660485878;NKX2-1,4:0.0617814793549;FOSL2:0.0521074171088;NHLH1,2:0.0372159687926;ETS1,2:0.0315450657041;MAZ:0.0247154100864;HNF1A:0.0206526394348;GATA6:0.0153932974974;ATF2:0.0141168745708;NR3C1:0.00531196623648;JUN:0.00523248781429;ZNF384:-0.00616944267628;HIC1:-0.00719744510028;NKX3-1:-0.0235402960336;POU1F1:-0.0384647909815;NKX2-3_NKX2-5:-0.0441188212329;PATZ1:-0.0448139939267;TFDP1:-0.0484022262561;SP1:-0.090027143626;ESRRA:-0.103542902569;bHLH_family:-0.106962599532;TOPORS:-0.117009048421;HBP1_HMGB_SSRP1_UBTF:-0.120412840028;GFI1:-0.143136864515;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.146557359818;AHR_ARNT_ARNT2:-0.157841652925;MYB:-0.158779246279;PITX1..3:-0.160190568631;NR1H4:-0.167164354338;FOXA2:-0.171099848462;HNF4A_NR2F1,2:-0.17359963133;LMO2:-0.175740539719;PAX6:-0.177057986084;TBX4,5:-0.210137948068;MZF1:-0.211873669754;CRX:-0.220140881192;ZNF143:-0.224518664847;E2F1..5:-0.225658598499;PRRX1,2:-0.246142913361;RORA:-0.246723497303;ELK1,4_GABP{A,B1}:-0.249272338479;NFIX:-0.251051141267;POU5F1:-0.252470382146;RFX1:-0.259850137105;OCT4_SOX2{dimer}:-0.260557533439;NFIL3:-0.270261158339;AIRE:-0.272767455997;FOX{I1,J2}:-0.275218634115;PAX5:-0.282366461256;SPIB:-0.291178715271;POU6F1:-0.309461117285;FOX{F1,F2,J1}:-0.335041439645;ELF1,2,4:-0.352959857039;NFY{A,B,C}:-0.355952526776;MTF1:-0.375385180829;EVI1:-0.378575450677;RREB1:-0.403541044604;PRDM1:-0.405082669104;MYOD1:-0.425732606448;GZF1:-0.43298244216;MED-1{core}:-0.482532833025;SPI1:-0.482616386755;RUNX1..3:-0.487838899197;FOX{D1,D2}:-0.512756723964;SNAI1..3:-0.539194207804;VSX1,2:-0.564183027827;IKZF2:-0.574341682238;EP300:-0.575952628549;FOXP3:-0.589502878624;FOXQ1:-0.621978658263;ARID5B:-0.646702076957;HOX{A4,D4}:-0.648906392404;ATF5_CREB3:-0.658196999368;ATF4:-0.658879525949;ZEB1:-0.666075204944;NRF1:-0.669915442701;GATA4:-0.683135434893;EGR1..3:-0.708882331209;ZFP161:-0.718544243009;MYFfamily:-0.751785657358;TEF:-0.784472587907;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.793277084229;TLX2:-0.800125758965;CUX2:-0.82004493597;SOX5:-0.825392463814;PAX1,9:-0.83686407589;CDX1,2,4:-0.845242438797;TGIF1:-0.850131962302;SREBF1,2:-0.886337051194;IRF7:-0.908424748274;HOX{A6,A7,B6,B7}:-0.920730288459;CREB1:-0.933668249673;YY1:-0.946781090054;PAX4:-0.950798950081;RBPJ:-0.962890081135;DMAP1_NCOR{1,2}_SMARC:-0.963546470238;FOXN1:-0.975215254174;IRF1,2:-1.00689747791;BPTF:-1.01368163786;FOXP1:-1.03314863646;BREu{core}:-1.07097185166;T:-1.12873765719;ZBTB16:-1.21715759587;RFX2..5_RFXANK_RFXAP:-1.21998687986;FOXM1:-1.32641239969;NKX6-1,2:-1.3323158349;STAT1,3:-1.35393882002;ALX1:-1.48130896224;FOXD3:-1.53888125363;FOXO1,3,4:-1.58288412683;PDX1:-1.61104572826
|top_motifs=IKZF1:1.96794455276;SRF:1.76913803398;POU3F1..4:1.62793989759;GTF2A1,2:1.62383309185;GLI1..3:1.58983106738;HOX{A5,B5}:1.38032846644;ZNF238:1.16745790634;TFAP4:1.07580503439;PPARG:1.05357018835;ZNF148:1.03281186908;HIF1A:0.991010629214;TP53:0.981940659854;EBF1:0.977661812354;SPZ1:0.952262001121;LHX3,4:0.920832345469;POU2F1..3:0.899582142628;GCM1,2:0.885929621611;DBP:0.832942730355;EN1,2:0.80115179832;SOX{8,9,10}:0.794886750047;RXRA_VDR{dimer}:0.742188797178;XCPE1{core}:0.732903562316;NFATC1..3:0.707114873231;MAFB:0.699004979619;SMAD1..7,9:0.698164334426;TLX1..3_NFIC{dimer}:0.687679032927;ONECUT1,2:0.687047586988;HSF1,2:0.64832481849;UFEwm:0.639677540735;TEAD1:0.638037629935;TFCP2:0.620561572237;ATF6:0.616239831222;HMGA1,2:0.613038718684;ZIC1..3:0.590095147132;NANOG{mouse}:0.584791947111;XBP1:0.571357893072;HOXA9_MEIS1:0.565157843244;AR:0.540068051324;PAX8:0.530066383586;TBP:0.509881519631;TAL1_TCF{3,4,12}:0.502169650324;SOX17:0.498116303178;ZNF423:0.487607523848;ZBTB6:0.472297430557;HAND1,2:0.454651211202;ESR1:0.441326220217;NR6A1:0.436689821594;NFE2L2:0.432794117637;HLF:0.375861904735;LEF1_TCF7_TCF7L1,2:0.349131161956;GTF2I:0.338788736662;NANOG:0.336472791537;CEBPA,B_DDIT3:0.317178761661;GFI1B:0.304643876064;MYBL2:0.302668227928;NKX2-2,8:0.297148294646;PAX3,7:0.29329695083;TFAP2{A,C}:0.280219392731;CDC5L:0.278424811288;BACH2:0.276848741351;STAT2,4,6:0.273159759785;HES1:0.267993860727;RXR{A,B,G}:0.260275025752;MTE{core}:0.254498047508;HMX1:0.231254792314;NFE2L1:0.21685504017;FOXL1:0.209492962313;NR5A1,2:0.186233866056;NFKB1_REL_RELA:0.180072411696;FOS_FOS{B,L1}_JUN{B,D}:0.173120013696;ADNP_IRX_SIX_ZHX:0.163751729199;ALX4:0.15322863289;PBX1:0.144466964375;SOX2:0.14437776282;TFAP2B:0.134644093281;STAT5{A,B}:0.133259290253;REST:0.112969174679;MEF2{A,B,C,D}:0.112879378166;KLF4:0.102288513801;NFE2:0.0904099674931;NKX3-2:0.089726786906;PAX2:0.076660485878;NKX2-1,4:0.0617814793549;FOSL2:0.0521074171088;NHLH1,2:0.0372159687926;ETS1,2:0.0315450657041;MAZ:0.0247154100864;HNF1A:0.0206526394348;GATA6:0.0153932974974;ATF2:0.0141168745708;NR3C1:0.00531196623648;JUN:0.00523248781429;ZNF384:-0.00616944267628;HIC1:-0.00719744510028;NKX3-1:-0.0235402960336;POU1F1:-0.0384647909815;NKX2-3_NKX2-5:-0.0441188212329;PATZ1:-0.0448139939267;TFDP1:-0.0484022262561;SP1:-0.090027143626;ESRRA:-0.103542902569;bHLH_family:-0.106962599532;TOPORS:-0.117009048421;HBP1_HMGB_SSRP1_UBTF:-0.120412840028;GFI1:-0.143136864515;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.146557359818;AHR_ARNT_ARNT2:-0.157841652925;MYB:-0.158779246279;PITX1..3:-0.160190568631;NR1H4:-0.167164354338;FOXA2:-0.171099848462;HNF4A_NR2F1,2:-0.17359963133;LMO2:-0.175740539719;PAX6:-0.177057986084;TBX4,5:-0.210137948068;MZF1:-0.211873669754;CRX:-0.220140881192;ZNF143:-0.224518664847;E2F1..5:-0.225658598499;PRRX1,2:-0.246142913361;RORA:-0.246723497303;ELK1,4_GABP{A,B1}:-0.249272338479;NFIX:-0.251051141267;POU5F1:-0.252470382146;RFX1:-0.259850137105;OCT4_SOX2{dimer}:-0.260557533439;NFIL3:-0.270261158339;AIRE:-0.272767455997;FOX{I1,J2}:-0.275218634115;PAX5:-0.282366461256;SPIB:-0.291178715271;POU6F1:-0.309461117285;FOX{F1,F2,J1}:-0.335041439645;ELF1,2,4:-0.352959857039;NFY{A,B,C}:-0.355952526776;MTF1:-0.375385180829;EVI1:-0.378575450677;RREB1:-0.403541044604;PRDM1:-0.405082669104;MYOD1:-0.425732606448;GZF1:-0.43298244216;MED-1{core}:-0.482532833025;SPI1:-0.482616386755;RUNX1..3:-0.487838899197;FOX{D1,D2}:-0.512756723964;SNAI1..3:-0.539194207804;VSX1,2:-0.564183027827;IKZF2:-0.574341682238;EP300:-0.575952628549;FOXP3:-0.589502878624;FOXQ1:-0.621978658263;ARID5B:-0.646702076957;HOX{A4,D4}:-0.648906392404;ATF5_CREB3:-0.658196999368;ATF4:-0.658879525949;ZEB1:-0.666075204944;NRF1:-0.669915442701;GATA4:-0.683135434893;EGR1..3:-0.708882331209;ZFP161:-0.718544243009;MYFfamily:-0.751785657358;TEF:-0.784472587907;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.793277084229;TLX2:-0.800125758965;CUX2:-0.82004493597;SOX5:-0.825392463814;PAX1,9:-0.83686407589;CDX1,2,4:-0.845242438797;TGIF1:-0.850131962302;SREBF1,2:-0.886337051194;IRF7:-0.908424748274;HOX{A6,A7,B6,B7}:-0.920730288459;CREB1:-0.933668249673;YY1:-0.946781090054;PAX4:-0.950798950081;RBPJ:-0.962890081135;DMAP1_NCOR{1,2}_SMARC:-0.963546470238;FOXN1:-0.975215254174;IRF1,2:-1.00689747791;BPTF:-1.01368163786;FOXP1:-1.03314863646;BREu{core}:-1.07097185166;T:-1.12873765719;ZBTB16:-1.21715759587;RFX2..5_RFXANK_RFXAP:-1.21998687986;FOXM1:-1.32641239969;NKX6-1,2:-1.3323158349;STAT1,3:-1.35393882002;ALX1:-1.48130896224;FOXD3:-1.53888125363;FOXO1,3,4:-1.58288412683;PDX1:-1.61104572826
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11345-117G4;search_select_hide=table117:FF:11345-117G4
}}
}}

Latest revision as of 17:53, 4 June 2020

Name:Fibroblast - Cardiac, donor2
Species:Human (Homo sapiens)
Library ID:CNhs11378
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueheart
dev stage21 weeks old fetus
sexfemale
ageemrbyo 21week
cell typefibroblast
cell lineNA
companyCell Applications
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number2112
catalog numberCA306-R10f
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005873
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11378 CAGE DRX008244 DRR009116
Accession ID Hg19

Library idBAMCTSS
CNhs11378 DRZ000541 DRZ001926
Accession ID Hg38

Library idBAMCTSS
CNhs11378 DRZ011891 DRZ013276
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005873
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10012.AGTCAA sRNA-Seq DRX037192 DRR041558
Accession ID Hg19

Library idBAMCTSS
SRhi10012.AGTCAA DRZ007200


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.168
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.124
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0.315
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.501
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.243
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.228
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.551
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.618
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.315
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.548
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.0628
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.802
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.315
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.624
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.826
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.624
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.624
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11378

Jaspar motifP-value
MA0002.20.189
MA0003.10.188
MA0004.10.455
MA0006.10.278
MA0007.10.0819
MA0009.10.208
MA0014.10.631
MA0017.10.723
MA0018.20.0148
MA0019.10.621
MA0024.10.0357
MA0025.10.776
MA0027.10.703
MA0028.10.205
MA0029.10.202
MA0030.10.162
MA0031.10.0318
MA0035.20.353
MA0038.10.962
MA0039.20.854
MA0040.10.447
MA0041.10.343
MA0042.10.819
MA0043.10.00511
MA0046.10.636
MA0047.20.754
MA0048.10.266
MA0050.13.3178e-9
MA0051.17.86287e-4
MA0052.10.868
MA0055.10.0742
MA0057.10.298
MA0058.10.167
MA0059.10.247
MA0060.10.293
MA0061.10.144
MA0062.20.00629
MA0065.20.0939
MA0066.10.177
MA0067.10.0411
MA0068.10.932
MA0069.10.339
MA0070.10.585
MA0071.10.282
MA0072.10.525
MA0073.10.421
MA0074.10.266
MA0076.10.0244
MA0077.10.041
MA0078.10.142
MA0079.20.883
MA0080.20.00155
MA0081.10.0809
MA0083.14.52996e-8
MA0084.10.365
MA0087.10.598
MA0088.10.3
MA0090.10.00211
MA0091.10.0393
MA0092.10.028
MA0093.10.411
MA0099.22.91631e-7
MA0100.10.132
MA0101.10.184
MA0102.20.0733
MA0103.10.727
MA0104.20.491
MA0105.10.13
MA0106.10.201
MA0107.10.211
MA0108.22.6263e-5
MA0111.10.0763
MA0112.20.00159
MA0113.10.212
MA0114.10.577
MA0115.10.406
MA0116.10.0841
MA0117.10.841
MA0119.10.0525
MA0122.10.492
MA0124.10.98
MA0125.10.992
MA0131.10.383
MA0135.10.577
MA0136.10.0027
MA0137.20.0969
MA0138.20.554
MA0139.10.671
MA0140.10.396
MA0141.10.372
MA0142.10.198
MA0143.10.955
MA0144.10.69
MA0145.10.137
MA0146.10.12
MA0147.10.903
MA0148.10.869
MA0149.10.402
MA0150.10.109
MA0152.10.126
MA0153.10.43
MA0154.10.0406
MA0155.10.0407
MA0156.10.297
MA0157.10.064
MA0159.10.0329
MA0160.10.568
MA0162.10.0593
MA0163.10.0206
MA0164.10.755
MA0258.10.00323
MA0259.10.966



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11378

Novel motifP-value
10.217
100.842
1000.587
1010.383
1020.779
1030.408
1040.195
1050.153
1060.0119
1070.0189
1080.463
1090.0829
110.0555
1100.353
1110.817
1120.658
1130.625
1140.261
1150.172
1160.0743
1170.876
1180.743
1190.0743
120.892
1200.203
1210.502
1220.932
1230.0813
1240.972
1250.988
1260.611
1270.468
1280.185
1290.788
130.599
1300.557
1310.194
1320.351
1330.982
1340.794
1350.0482
1360.666
1370.476
1380.546
1390.0511
140.761
1400.872
1410.592
1420.427
1430.00832
1440.83
1450.156
1460.176
1470.411
1480.622
1490.0189
150.336
1500.0639
1510.62
1520.0319
1530.813
1540.799
1550.259
1560.346
1570.759
1580.177
1590.638
160.173
1600.041
1610.403
1620.294
1630.425
1640.522
1650.326
1660.832
1670.498
1680.949
1690.0243
170.105
180.0479
190.0382
20.527
200.427
210.753
220.159
230.00858
240.246
250.579
260.0566
270.604
280.259
290.846
30.44
300.512
310.553
324.97656e-8
330.575
340.137
350.902
360.81
370.118
380.558
390.33
40.25
400.207
410.671
420.609
430.173
440.484
450.346
460.0722
470.24
480.0624
490.206
50.371
500.724
510.654
520.649
530.629
540.355
550.868
560.657
570.234
580.888
590.00809
60.697
600.448
610.903
620.257
630.294
640.129
650.0442
660.444
670.269
680.0711
690.676
70.599
700.199
710.12
720.711
730.0291
740.903
750.485
760.525
770.033
780.428
790.00329
80.0588
800.513
810.79
820.747
830.592
840.672
850.0241
860.799
870.0721
880.112
890.0434
90.337
900.674
910.181
920.79
930.772
940.237
950.249
960.79
970.259
980.876
990.0345



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11378


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0002494 (cardiocyte)
0000057 (fibroblast)
0002548 (cardiac fibroblast)

UBERON: Anatomy
0000468 (multi-cellular organism)
0007100 (primary circulatory organ)
0000948 (heart)
0002384 (connective tissue)
0000479 (tissue)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0010317 (germ layer / neural crest derived structure)
0004535 (cardiovascular system)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000001 (sample)
0000059 (human cardiac fibroblast sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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