Personal tools

FF:11765-123I1: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(5 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005341
|DRA_sample_Accession=CAGE@SAMD00005341
|accession_numbers=CAGE;DRX008577;DRR009449;DRZ000874;DRZ002259
|accession_numbers=CAGE;DRX008577;DRR009449;DRZ000874;DRZ002259;DRZ012224;DRZ013609
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002384,UBERON:0000479,UBERON:0007846,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000043,UBERON:0007845,UBERON:0002204
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002384,UBERON:0000479,UBERON:0007846,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000043,UBERON:0007845,UBERON:0002204
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000499,CL:0000630,CL:0000135,CL:0000386,CL:0000255,CL:0000388
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000499,CL:0000630,CL:0000135,CL:0000386,CL:0000255,CL:0000388
Line 42: Line 42:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/tenocyte%252c%2520donor2.CNhs12640.11765-123I1.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/tenocyte%252c%2520donor2.CNhs12640.11765-123I1.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/tenocyte%252c%2520donor2.CNhs12640.11765-123I1.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/tenocyte%252c%2520donor2.CNhs12640.11765-123I1.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/tenocyte%252c%2520donor2.CNhs12640.11765-123I1.hg38.nobarcode.ctss.bed.gz
|id=FF:11765-123I1
|id=FF:11765-123I1
|is_a=EFO:0002091;;FF:0000280
|is_a=EFO:0002091;;FF:0000280
Line 47: Line 52:
|library_id=CNhs12640
|library_id=CNhs12640
|library_id_phase_based=2:CNhs12640
|library_id_phase_based=2:CNhs12640
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11765
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11765
|name=tenocyte, donor2
|name=tenocyte, donor2
|namespace=FANTOM5
|namespace=FANTOM5
Line 54: Line 63:
|profile_rnaseq=
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
|repeat_enrich_byfamily=0,0,0.142142173967197,0,0,0,0,-0.160318030086386,0,0.0375695221156509,-0.140261386609744,0,0,0,0,0,0,0,0,0,0,0,0.164999540860188,0,0.423369984257451,0,0,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,0.137471744682773,0,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0,0,0.0509357280732625,0,-0.0969923612426051,0,0,0.186940720721298,0.164999540860188,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0521760476860644,0,0,0.0466439006880448,-0.0584468268118252,0.124731601506711,0,0.37776633136086,0,0,-0.0980353512377064,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.295718578694969,0,0,0,0.087490614380885,0.148008138413363,0,0,0,0,0,0
|repeat_enrich_byfamily=0,0,0.142142173967197,0,0,0,0,-0.160318030086386,0,0.0375695221156509,-0.140261386609744,0,0,0,0,0,0,0,0,0,0,0,0.164999540860188,0,0.423369984257451,0,0,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,0.137471744682773,0,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0,0,0.0509357280732625,0,-0.0969923612426051,0,0,0.186940720721298,0.164999540860188,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0521760476860644,0,0,0.0466439006880448,-0.0584468268118252,0.124731601506711,0,0.37776633136086,0,0,-0.0980353512377064,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.295718578694969,0,0,0,0.087490614380885,0.148008138413363,0,0,0,0,0,0
|repeat_enrich_byname=0,0,0,0.164999540860188,-0.0980353512377064,0,0,0,0,0,0,0,0,0.37776633136086,0,0,0.130587456075296,0,-0.189801870817614,-0.143515142523472,0.082499770430094,0,0.0883909598559299,0,0.37776633136086,0,0,0,0,0,0.164999540860188,0,0.621752147246082,0,0.79519908975036,0,0,0,0,0.134951773920585,-0.140472690038219,0,0.0530654883130515,0.215940086857026,0,0.0335803347148289,0,0,0.060784670313303,0,0.0441200570664475,0.0822793725367709,-0.0566120472426186,0.175211461752625,0.118194881967808,0,0,0,0.3590729641204,0.486306217753008,0,0,0.214149152450706,0.128473701331996,0,0,1.29147877226031,0,0.197423556952274,0.40319572065586,0,0,0,0,0,0,0,0,0,0,0,0,0,1.27026300489697,0.488994539214863,0,0,0,0,0.114672629942617,0,0,0.00448017540429319,0.0248620119332006,-0.0226074332704641,-0.297318241862406,0,0.369468281395246,0.0328377817773722,0.433158648152894,-0.206215300331541,0.636782495863721,0.436895219234547,0,0.0455929013590677,0.0870746458679561,0.0379310198965779,0.133624557887891,-0.0302447930437535,0.175051760017336,0.176371415557214,0,0,0.0455456411916613,0.0804678541022457,0,0.0828116690998362,0.479262114991139,-0.102943710325446,0.116096947838608,0.268013012845543,0.0348581669068825,0.0596657724898573,0.102609645510527,-0.0796701215357347,0.0817407789907973,0.028136395374293,0.165730357698309,0,0,0.0112304868903387,0.0300710287865097,-0.238059841817819,0,0.0927155327948982,-0.0683442610773682,0,0.0605886443794962,-0.0601668121206729,0,0.306339623488821,0.048099707912982,0,0,0,0,0.454647098925123,-0.0070833265150021,0.543013720445291,-0.232855561555545,0,-0.0275476286414565,0.00136390864814734,-0.108402914672157,0,0.0294026015838419,0.308637201467728,0,0.162013294328887,0,0.011324998599708,0.461793902910514,0.0466439006880448,0.249463203013422,-0.0584468268118252,0.085511202118101,-0.0815037129659317,0.0648669712712708,0.593235394906228,0.076929300124961,0.289639498885572,0,0.0158726900376051,0.136485004272308,0.0377350808596248,0.0658375693652047,0.114323516253597,0.168577763874306,0,0.1088676717876,0,-0.360022933825505,-0.020490554631875,-0.0615230432198262,-0.333567057853453,0.00778621620554348,-0.131975272095655,0.501614607777262,0,-0.0810017596559328,0,0,0.0146324575255488,0.0521760476860644,0.329111590990169,0.1452948912552,0,0.133930715800778,0,0,0.488572390424893,0.34121695684149,0,0.229430385366461,-0.324918566279002,-0.0275230465894157,-0.115971073434934,0.671858008405159,0,0.539769413896161,0,0.284284347934395,-0.321643715883636,0.203167109908315,-0.165136225033511,-0.253326341486756,0,0.227306194748324,0,0,0.106756581969219,0,0.0918693706459964,0,0,0.0925900722519531,0,0,0.082499770430094,0.78418434523486,0.175580577175269,0,0,0,0,0,0,0,0.439638732655984,0.221859664389431,0,-0.0243736242646745,0,0,0,0,0,0,0,0,0.791943126297973,-0.00241317280852993,-0.12301741567642,0,0,0,0,0.411153536230919,-0.203236562094724,0.284284347934395,-0.131862706497632,0,0.227323549462562,0,0,0.0788585510709768,0,0,0,0,0.107269083806524,0.485589677249671,0,0.164999540860188,0,-0.27695440160179,0,0,0,0.0268203230982148,0.00850024880402112,0,0,0.358468046198531,0,0.175708629202396,-0.0815818795468414,0,-0.026473401958326,0.252407850182134,-0.525435995413602,0,0,-0.261347131789888,0,0.147862740564551,-0.0455461020483365,0,0,0,0,0,0,0,0,0,-0.214314512399756,0,0,0,0,0,0.164999540860188,0,0,0,0,0,0.210163948878502,0.0727754842016778,0.244308887936312,0,0,0,0,0,0,0.140893517781285,0.114807143049369,0.082499770430094,0,0,0,0,0,0,0,-0.093659608302382,0,0,0,0,0,-0.0969923612426051,0,0,0,0.284284347934395,-0.280522773219489,0,0,-0.277362132193514,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0416804548247404,0.0375695221156509,0,0,0,0,0,0,0,0.397024710199068,0,0,0,0,0.170399974225417,0,0,0,-0.104796384789156,0,-0.160318030086386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.608956417841105,0.0385151669547417,0.164999540860188,-0.000791098582063138,0,0,0.142307654466282,0,0,0,0,0,0,0.195983125434034,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0354714087798906,0,0,0,0,0,0,0,-0.0979578962680575,0,0,-0.00953303937043205,0,0,0,0,0,0,0.142511830613427,0.323264425579612,0.0422203491713632,0,0,0,0.0281141979476391,0,0,0.0591056006929991,0,0.0982221534412868,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.423369984257451,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0340113632754165,0,0,0,0,0,0,0,0.164999540860188,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0800184682686384,0,0,0,0.85249495855288,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171264127655484,0,0,0,0,0,0,0,0,0,0,0.0198710891303295,0,0,0.116777465621134,0,0.199907715704368,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164999540860188,-0.550504042515712,0,0,0,0,0.117362430199269,0,0,0,0,0,0,0,-0.00492872737175907,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0306737396458896,0,0,0.319312805036698,0,0,0,0,0,0,0,0,0,0,0,0,0.103679361710062,0,0,0,0,0,0,0,0,0,0,-0.0484300422256687,0,0,0,0,0,0,0,0,1.15845577185863,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0720656554139641,0.148008138413363,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107281360987819,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0528028480574185,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0241262850837726,0,0,0,0,0,0,0,0,0.00648052003478994,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0695606586202656,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.224641944397292,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.591437157389938,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.082499770430094,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164999540860188,0,0,0.292472305991485,0,0,0,0,0,0,0,-0.122695996997001,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.058759986912532,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0317165860483832,0,0,0,0,0,0,0,0,0,0,0,0,0.164999540860188,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0797419986649781,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.186940720721298,0,0.271382936110524,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.238408514781353,0,0,0,0,0,0,0,0,0,0,-0.0412500915278073,0.142142173967197,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0685385555823728,0,0,-0.0422874684771159,0,0.164999540860188,0,0,0,0,0,0,0.0350053057108735,0,0,0,0,0,0,0,0,0,0,-0.0400762477245316,0,0,0.1469458455105,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.115072554462778,0,-0.129587485199454,0.179618306083864,0,0,0.288968295100185,0,0,0,0,0,-0.00999335423011088,-0.395033174100926,0.519943196841365,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0838759867214579,0.284284347934395,0,0,-0.0568589461625992,0.185171463330553,0,0.545174619840011,0,0,-0.0781053106522872,0,0,0,0.0690401334866013
|repeat_enrich_byname=0,0,0,0.164999540860188,-0.0980353512377064,0,0,0,0,0,0,0,0,0.37776633136086,0,0,0.130587456075296,0,-0.189801870817614,-0.143515142523472,0.082499770430094,0,0.0883909598559299,0,0.37776633136086,0,0,0,0,0,0.164999540860188,0,0.621752147246082,0,0.79519908975036,0,0,0,0,0.134951773920585,-0.140472690038219,0,0.0530654883130515,0.215940086857026,0,0.0335803347148289,0,0,0.060784670313303,0,0.0441200570664475,0.0822793725367709,-0.0566120472426186,0.175211461752625,0.118194881967808,0,0,0,0.3590729641204,0.486306217753008,0,0,0.214149152450706,0.128473701331996,0,0,1.29147877226031,0,0.197423556952274,0.40319572065586,0,0,0,0,0,0,0,0,0,0,0,0,0,1.27026300489697,0.488994539214863,0,0,0,0,0.114672629942617,0,0,0.00448017540429319,0.0248620119332006,-0.0226074332704641,-0.297318241862406,0,0.369468281395246,0.0328377817773722,0.433158648152894,-0.206215300331541,0.636782495863721,0.436895219234547,0,0.0455929013590677,0.0870746458679561,0.0379310198965779,0.133624557887891,-0.0302447930437535,0.175051760017336,0.176371415557214,0,0,0.0455456411916613,0.0804678541022457,0,0.0828116690998362,0.479262114991139,-0.102943710325446,0.116096947838608,0.268013012845543,0.0348581669068825,0.0596657724898573,0.102609645510527,-0.0796701215357347,0.0817407789907973,0.028136395374293,0.165730357698309,0,0,0.0112304868903387,0.0300710287865097,-0.238059841817819,0,0.0927155327948982,-0.0683442610773682,0,0.0605886443794962,-0.0601668121206729,0,0.306339623488821,0.048099707912982,0,0,0,0,0.454647098925123,-0.0070833265150021,0.543013720445291,-0.232855561555545,0,-0.0275476286414565,0.00136390864814734,-0.108402914672157,0,0.0294026015838419,0.308637201467728,0,0.162013294328887,0,0.011324998599708,0.461793902910514,0.0466439006880448,0.249463203013422,-0.0584468268118252,0.085511202118101,-0.0815037129659317,0.0648669712712708,0.593235394906228,0.076929300124961,0.289639498885572,0,0.0158726900376051,0.136485004272308,0.0377350808596248,0.0658375693652047,0.114323516253597,0.168577763874306,0,0.1088676717876,0,-0.360022933825505,-0.020490554631875,-0.0615230432198262,-0.333567057853453,0.00778621620554348,-0.131975272095655,0.501614607777262,0,-0.0810017596559328,0,0,0.0146324575255488,0.0521760476860644,0.329111590990169,0.1452948912552,0,0.133930715800778,0,0,0.488572390424893,0.34121695684149,0,0.229430385366461,-0.324918566279002,-0.0275230465894157,-0.115971073434934,0.671858008405159,0,0.539769413896161,0,0.284284347934395,-0.321643715883636,0.203167109908315,-0.165136225033511,-0.253326341486756,0,0.227306194748324,0,0,0.106756581969219,0,0.0918693706459964,0,0,0.0925900722519531,0,0,0.082499770430094,0.78418434523486,0.175580577175269,0,0,0,0,0,0,0,0.439638732655984,0.221859664389431,0,-0.0243736242646745,0,0,0,0,0,0,0,0,0.791943126297973,-0.00241317280852993,-0.12301741567642,0,0,0,0,0.411153536230919,-0.203236562094724,0.284284347934395,-0.131862706497632,0,0.227323549462562,0,0,0.0788585510709768,0,0,0,0,0.107269083806524,0.485589677249671,0,0.164999540860188,0,-0.27695440160179,0,0,0,0.0268203230982148,0.00850024880402112,0,0,0.358468046198531,0,0.175708629202396,-0.0815818795468414,0,-0.026473401958326,0.252407850182134,-0.525435995413602,0,0,-0.261347131789888,0,0.147862740564551,-0.0455461020483365,0,0,0,0,0,0,0,0,0,-0.214314512399756,0,0,0,0,0,0.164999540860188,0,0,0,0,0,0.210163948878502,0.0727754842016778,0.244308887936312,0,0,0,0,0,0,0.140893517781285,0.114807143049369,0.082499770430094,0,0,0,0,0,0,0,-0.093659608302382,0,0,0,0,0,-0.0969923612426051,0,0,0,0.284284347934395,-0.280522773219489,0,0,-0.277362132193514,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0416804548247404,0.0375695221156509,0,0,0,0,0,0,0,0.397024710199068,0,0,0,0,0.170399974225417,0,0,0,-0.104796384789156,0,-0.160318030086386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.608956417841105,0.0385151669547417,0.164999540860188,-0.000791098582063138,0,0,0.142307654466282,0,0,0,0,0,0,0.195983125434034,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0354714087798906,0,0,0,0,0,0,0,-0.0979578962680575,0,0,-0.00953303937043205,0,0,0,0,0,0,0.142511830613427,0.323264425579612,0.0422203491713632,0,0,0,0.0281141979476391,0,0,0.0591056006929991,0,0.0982221534412868,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.423369984257451,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0340113632754165,0,0,0,0,0,0,0,0.164999540860188,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0800184682686384,0,0,0,0.85249495855288,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171264127655484,0,0,0,0,0,0,0,0,0,0,0.0198710891303295,0,0,0.116777465621134,0,0.199907715704368,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164999540860188,-0.550504042515712,0,0,0,0,0.117362430199269,0,0,0,0,0,0,0,-0.00492872737175907,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0306737396458896,0,0,0.319312805036698,0,0,0,0,0,0,0,0,0,0,0,0,0.103679361710062,0,0,0,0,0,0,0,0,0,0,-0.0484300422256687,0,0,0,0,0,0,0,0,1.15845577185863,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0720656554139641,0.148008138413363,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107281360987819,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0528028480574185,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0241262850837726,0,0,0,0,0,0,0,0,0.00648052003478994,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0695606586202656,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.224641944397292,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.591437157389938,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.082499770430094,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164999540860188,0,0,0.292472305991485,0,0,0,0,0,0,0,-0.122695996997001,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.058759986912532,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0317165860483832,0,0,0,0,0,0,0,0,0,0,0,0,0.164999540860188,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0797419986649781,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.186940720721298,0,0.271382936110524,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.238408514781353,0,0,0,0,0,0,0,0,0,0,-0.0412500915278073,0.142142173967197,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0685385555823728,0,0,-0.0422874684771159,0,0.164999540860188,0,0,0,0,0,0,0.0350053057108735,0,0,0,0,0,0,0,0,0,0,-0.0400762477245316,0,0,0.1469458455105,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.115072554462778,0,-0.129587485199454,0.179618306083864,0,0,0.288968295100185,0,0,0,0,0,-0.00999335423011088,-0.395033174100926,0.519943196841365,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0838759867214579,0.284284347934395,0,0,-0.0568589461625992,0.185171463330553,0,0.545174619840011,0,0,-0.0781053106522872,0,0,0,0.0690401334866013
Line 91: Line 101:
|top_motifs=FOXL1:2.77737470766;ESR1:2.27022348849;ZNF238:2.00716780933;UFEwm:1.96691892561;MYBL2:1.95756047042;PAX1,9:1.952978334;EN1,2:1.82846151869;RXRA_VDR{dimer}:1.78097512328;ATF6:1.76451796197;HES1:1.73516094159;GLI1..3:1.72107925883;ALX4:1.64716774045;GCM1,2:1.61142347731;NR6A1:1.60218219568;NKX2-2,8:1.55774076325;EVI1:1.50053151678;STAT2,4,6:1.49580740775;TAL1_TCF{3,4,12}:1.48633478805;KLF4:1.37968773499;HOX{A4,D4}:1.36921666803;GZF1:1.31782506569;ZNF423:1.29318057881;GFI1B:1.27577097448;FOXO1,3,4:1.21562019455;NR1H4:1.13295256767;TFCP2:1.13189021559;IKZF1:1.11027789111;EBF1:1.10343418231;RXR{A,B,G}:1.09885687819;GTF2A1,2:1.07188169942;XCPE1{core}:0.955249999083;HMGA1,2:0.94736609082;TEAD1:0.914981509999;NKX3-1:0.910123240323;TBP:0.909704710988;SMAD1..7,9:0.864726383078;HAND1,2:0.847449864509;MAFB:0.835796964778;TFAP4:0.749941932024;MTF1:0.704721785909;GTF2I:0.700013648913;NKX2-1,4:0.692942466961;XBP1:0.657239046573;TP53:0.648532699994;TLX1..3_NFIC{dimer}:0.641820714373;PATZ1:0.640141252451;HSF1,2:0.63210673542;DBP:0.598446082577;AIRE:0.593207564028;STAT1,3:0.582559483059;IRF1,2:0.581039512095;PRDM1:0.577716136561;NFATC1..3:0.576952900539;NKX6-1,2:0.568839894978;ZNF384:0.564419183751;ZIC1..3:0.562856594017;NFE2L1:0.542832578714;LHX3,4:0.528626851764;RREB1:0.522790540208;MAZ:0.502561194734;HIC1:0.501472704229;TFAP2B:0.481271677546;MTE{core}:0.435347966621;NKX3-2:0.427398757913;FOXD3:0.421821578093;ZNF148:0.400254227287;HMX1:0.379326429869;HBP1_HMGB_SSRP1_UBTF:0.330553983075;NR3C1:0.29651452511;HIF1A:0.285882380486;TFAP2{A,C}:0.278974565534;YY1:0.278427213744;PAX5:0.26149621053;SP1:0.261103477612;TEF:0.221042154654;BPTF:0.216648519964;ARID5B:0.200920586843;AR:0.193383881143;HOX{A5,B5}:0.169092681207;MYFfamily:0.160918972998;MED-1{core}:0.152596978084;HLF:0.150625953437;NANOG{mouse}:0.149358818892;MZF1:0.132851890078;HOX{A6,A7,B6,B7}:0.10195886096;PPARG:0.0902035611088;NHLH1,2:0.0898737270004;REST:0.0827221105484;VSX1,2:0.0800515604677;POU5F1:0.0561793869115;SRF:0.0536937207065;SOX5:0.0451539548144;NFE2L2:0.0383486773587;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.0214831355934;bHLH_family:0.00611870976899;ZBTB6:0.00585873133043;TBX4,5:-0.00612233560972;FOX{D1,D2}:-0.0110722506347;HNF1A:-0.0243179828913;MEF2{A,B,C,D}:-0.0685508899071;PRRX1,2:-0.153294563491;RUNX1..3:-0.159194328106;RFX1:-0.162076360902;MYB:-0.174495464286;IKZF2:-0.181588946496;LMO2:-0.181922557633;SPZ1:-0.197763604352;ESRRA:-0.212336922802;ZBTB16:-0.21577709207;CDC5L:-0.233693882076;SREBF1,2:-0.241089748368;EGR1..3:-0.254668682982;PAX4:-0.258903355658;NKX2-3_NKX2-5:-0.266535546468;FOS_FOS{B,L1}_JUN{B,D}:-0.274071577405;PDX1:-0.275620169153;POU6F1:-0.278686541048;HNF4A_NR2F1,2:-0.281069936768;ZNF143:-0.290371763485;BACH2:-0.304872933105;CDX1,2,4:-0.305168963654;CEBPA,B_DDIT3:-0.315995245383;FOXM1:-0.341972520969;FOSL2:-0.35648978548;NFE2:-0.363229199532;EP300:-0.364258345637;NFIL3:-0.367387100351;DMAP1_NCOR{1,2}_SMARC:-0.368244587019;AHR_ARNT_ARNT2:-0.395746014686;TLX2:-0.404168253801;NFIX:-0.425100303201;FOXP1:-0.45262485964;ONECUT1,2:-0.488826013592;IRF7:-0.494698743806;NRF1:-0.509136092643;T:-0.515647252206;STAT5{A,B}:-0.525891019978;GFI1:-0.53188031062;RFX2..5_RFXANK_RFXAP:-0.537463377417;LEF1_TCF7_TCF7L1,2:-0.548387578799;NFKB1_REL_RELA:-0.550260286537;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.560585020378;PAX3,7:-0.564177998656;NR5A1,2:-0.569741648579;ZFP161:-0.605894219974;BREu{core}:-0.611319060228;SOX17:-0.611925142487;GATA4:-0.628306469396;SPI1:-0.631134912655;ELK1,4_GABP{A,B1}:-0.640082054212;TOPORS:-0.670079043448;FOXP3:-0.675213851981;CRX:-0.692929648062;CREB1:-0.710253101132;HOXA9_MEIS1:-0.723540887909;POU3F1..4:-0.727406642698;PAX6:-0.730256614832;ETS1,2:-0.733433290282;SNAI1..3:-0.755737221007;TFDP1:-0.783606832568;SPIB:-0.802218194984;FOX{I1,J2}:-0.827585790138;E2F1..5:-0.83207059347;ADNP_IRX_SIX_ZHX:-0.845500329182;TGIF1:-0.858116897992;JUN:-0.860711631735;ATF4:-0.861086956946;ATF2:-0.87361573245;FOXN1:-0.901956347781;PITX1..3:-0.93781795605;FOX{F1,F2,J1}:-0.941238494609;ATF5_CREB3:-0.949878011679;ZEB1:-0.964935541286;RBPJ:-1.01913793758;PBX1:-1.07487311726;ELF1,2,4:-1.12212340896;POU1F1:-1.17462603616;OCT4_SOX2{dimer}:-1.22279250978;PAX2:-1.26905118449;NFY{A,B,C}:-1.33555424293;SOX{8,9,10}:-1.34183258051;SOX2:-1.35522643476;FOXA2:-1.38768080008;CUX2:-1.41017978493;RORA:-1.4138903364;POU2F1..3:-1.41548058403;GATA6:-1.42658916962;MYOD1:-1.51266579263;PAX8:-1.61883180148;ALX1:-1.83330237275;FOXQ1:-2.09550170055;NANOG:-2.1617027613
|top_motifs=FOXL1:2.77737470766;ESR1:2.27022348849;ZNF238:2.00716780933;UFEwm:1.96691892561;MYBL2:1.95756047042;PAX1,9:1.952978334;EN1,2:1.82846151869;RXRA_VDR{dimer}:1.78097512328;ATF6:1.76451796197;HES1:1.73516094159;GLI1..3:1.72107925883;ALX4:1.64716774045;GCM1,2:1.61142347731;NR6A1:1.60218219568;NKX2-2,8:1.55774076325;EVI1:1.50053151678;STAT2,4,6:1.49580740775;TAL1_TCF{3,4,12}:1.48633478805;KLF4:1.37968773499;HOX{A4,D4}:1.36921666803;GZF1:1.31782506569;ZNF423:1.29318057881;GFI1B:1.27577097448;FOXO1,3,4:1.21562019455;NR1H4:1.13295256767;TFCP2:1.13189021559;IKZF1:1.11027789111;EBF1:1.10343418231;RXR{A,B,G}:1.09885687819;GTF2A1,2:1.07188169942;XCPE1{core}:0.955249999083;HMGA1,2:0.94736609082;TEAD1:0.914981509999;NKX3-1:0.910123240323;TBP:0.909704710988;SMAD1..7,9:0.864726383078;HAND1,2:0.847449864509;MAFB:0.835796964778;TFAP4:0.749941932024;MTF1:0.704721785909;GTF2I:0.700013648913;NKX2-1,4:0.692942466961;XBP1:0.657239046573;TP53:0.648532699994;TLX1..3_NFIC{dimer}:0.641820714373;PATZ1:0.640141252451;HSF1,2:0.63210673542;DBP:0.598446082577;AIRE:0.593207564028;STAT1,3:0.582559483059;IRF1,2:0.581039512095;PRDM1:0.577716136561;NFATC1..3:0.576952900539;NKX6-1,2:0.568839894978;ZNF384:0.564419183751;ZIC1..3:0.562856594017;NFE2L1:0.542832578714;LHX3,4:0.528626851764;RREB1:0.522790540208;MAZ:0.502561194734;HIC1:0.501472704229;TFAP2B:0.481271677546;MTE{core}:0.435347966621;NKX3-2:0.427398757913;FOXD3:0.421821578093;ZNF148:0.400254227287;HMX1:0.379326429869;HBP1_HMGB_SSRP1_UBTF:0.330553983075;NR3C1:0.29651452511;HIF1A:0.285882380486;TFAP2{A,C}:0.278974565534;YY1:0.278427213744;PAX5:0.26149621053;SP1:0.261103477612;TEF:0.221042154654;BPTF:0.216648519964;ARID5B:0.200920586843;AR:0.193383881143;HOX{A5,B5}:0.169092681207;MYFfamily:0.160918972998;MED-1{core}:0.152596978084;HLF:0.150625953437;NANOG{mouse}:0.149358818892;MZF1:0.132851890078;HOX{A6,A7,B6,B7}:0.10195886096;PPARG:0.0902035611088;NHLH1,2:0.0898737270004;REST:0.0827221105484;VSX1,2:0.0800515604677;POU5F1:0.0561793869115;SRF:0.0536937207065;SOX5:0.0451539548144;NFE2L2:0.0383486773587;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.0214831355934;bHLH_family:0.00611870976899;ZBTB6:0.00585873133043;TBX4,5:-0.00612233560972;FOX{D1,D2}:-0.0110722506347;HNF1A:-0.0243179828913;MEF2{A,B,C,D}:-0.0685508899071;PRRX1,2:-0.153294563491;RUNX1..3:-0.159194328106;RFX1:-0.162076360902;MYB:-0.174495464286;IKZF2:-0.181588946496;LMO2:-0.181922557633;SPZ1:-0.197763604352;ESRRA:-0.212336922802;ZBTB16:-0.21577709207;CDC5L:-0.233693882076;SREBF1,2:-0.241089748368;EGR1..3:-0.254668682982;PAX4:-0.258903355658;NKX2-3_NKX2-5:-0.266535546468;FOS_FOS{B,L1}_JUN{B,D}:-0.274071577405;PDX1:-0.275620169153;POU6F1:-0.278686541048;HNF4A_NR2F1,2:-0.281069936768;ZNF143:-0.290371763485;BACH2:-0.304872933105;CDX1,2,4:-0.305168963654;CEBPA,B_DDIT3:-0.315995245383;FOXM1:-0.341972520969;FOSL2:-0.35648978548;NFE2:-0.363229199532;EP300:-0.364258345637;NFIL3:-0.367387100351;DMAP1_NCOR{1,2}_SMARC:-0.368244587019;AHR_ARNT_ARNT2:-0.395746014686;TLX2:-0.404168253801;NFIX:-0.425100303201;FOXP1:-0.45262485964;ONECUT1,2:-0.488826013592;IRF7:-0.494698743806;NRF1:-0.509136092643;T:-0.515647252206;STAT5{A,B}:-0.525891019978;GFI1:-0.53188031062;RFX2..5_RFXANK_RFXAP:-0.537463377417;LEF1_TCF7_TCF7L1,2:-0.548387578799;NFKB1_REL_RELA:-0.550260286537;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.560585020378;PAX3,7:-0.564177998656;NR5A1,2:-0.569741648579;ZFP161:-0.605894219974;BREu{core}:-0.611319060228;SOX17:-0.611925142487;GATA4:-0.628306469396;SPI1:-0.631134912655;ELK1,4_GABP{A,B1}:-0.640082054212;TOPORS:-0.670079043448;FOXP3:-0.675213851981;CRX:-0.692929648062;CREB1:-0.710253101132;HOXA9_MEIS1:-0.723540887909;POU3F1..4:-0.727406642698;PAX6:-0.730256614832;ETS1,2:-0.733433290282;SNAI1..3:-0.755737221007;TFDP1:-0.783606832568;SPIB:-0.802218194984;FOX{I1,J2}:-0.827585790138;E2F1..5:-0.83207059347;ADNP_IRX_SIX_ZHX:-0.845500329182;TGIF1:-0.858116897992;JUN:-0.860711631735;ATF4:-0.861086956946;ATF2:-0.87361573245;FOXN1:-0.901956347781;PITX1..3:-0.93781795605;FOX{F1,F2,J1}:-0.941238494609;ATF5_CREB3:-0.949878011679;ZEB1:-0.964935541286;RBPJ:-1.01913793758;PBX1:-1.07487311726;ELF1,2,4:-1.12212340896;POU1F1:-1.17462603616;OCT4_SOX2{dimer}:-1.22279250978;PAX2:-1.26905118449;NFY{A,B,C}:-1.33555424293;SOX{8,9,10}:-1.34183258051;SOX2:-1.35522643476;FOXA2:-1.38768080008;CUX2:-1.41017978493;RORA:-1.4138903364;POU2F1..3:-1.41548058403;GATA6:-1.42658916962;MYOD1:-1.51266579263;PAX8:-1.61883180148;ALX1:-1.83330237275;FOXQ1:-2.09550170055;NANOG:-2.1617027613
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11765-123I1;search_select_hide=table117:FF:11765-123I1
}}
}}

Latest revision as of 18:18, 4 June 2020

Name:tenocyte, donor2
Species:Human (Homo sapiens)
Library ID:CNhs12640
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuetendon
dev stageNA
sexNA
ageNA
cell typetenocyte
cell lineNA
companyNA
collaborationGundula Schulze-Tanzil
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typeNA
extraction protocol (Details)NA

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005341
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12640 CAGE DRX008577 DRR009449
Accession ID Hg19

Library idBAMCTSS
CNhs12640 DRZ000874 DRZ002259
Accession ID Hg38

Library idBAMCTSS
CNhs12640 DRZ012224 DRZ013609
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.18
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.287
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.486
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.103
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.13
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.947
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.049
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.166
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.577
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0.784
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.364
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0.165
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.165
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.455
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.455
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.368
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular1.645
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.165
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0.52
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.969
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.692
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.924
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.165
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic1.083
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0.138
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.52
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12640

Jaspar motifP-value
MA0002.20.164
MA0003.10.153
MA0004.10.156
MA0006.10.238
MA0007.10.777
MA0009.10.495
MA0014.10.582
MA0017.10.473
MA0018.21.86588e-5
MA0019.10.37
MA0024.12.3607e-4
MA0025.12.62952e-4
MA0027.10.455
MA0028.10.0078
MA0029.10.626
MA0030.10.188
MA0031.10.901
MA0035.20.00424
MA0038.10.0422
MA0039.20.293
MA0040.10.821
MA0041.10.459
MA0042.10.529
MA0043.11.14176e-5
MA0046.10.221
MA0047.20.933
MA0048.10.177
MA0050.10.165
MA0051.10.0722
MA0052.10.709
MA0055.10.625
MA0057.10.197
MA0058.10.13
MA0059.10.34
MA0060.13.64986e-11
MA0061.10.212
MA0062.22.20547e-9
MA0065.20.564
MA0066.10.239
MA0067.10.0238
MA0068.10.897
MA0069.10.339
MA0070.10.47
MA0071.10.856
MA0072.10.476
MA0073.10.641
MA0074.10.169
MA0076.10.00127
MA0077.10.114
MA0078.10.87
MA0079.20.998
MA0080.28.68411e-8
MA0081.10.00243
MA0083.10.293
MA0084.10.243
MA0087.10.525
MA0088.10.834
MA0090.10.00155
MA0091.10.0269
MA0092.10.371
MA0093.10.136
MA0099.21.15532e-5
MA0100.10.155
MA0101.18.72647e-4
MA0102.20.577
MA0103.10.00977
MA0104.20.0406
MA0105.10.437
MA0106.10.282
MA0107.10.00252
MA0108.20.0405
MA0111.10.409
MA0112.20.00173
MA0113.10.564
MA0114.10.747
MA0115.10.529
MA0116.10.14
MA0117.10.0793
MA0119.10.397
MA0122.10.541
MA0124.10.706
MA0125.10.242
MA0131.10.197
MA0135.10.46
MA0136.15.89588e-12
MA0137.20.0431
MA0138.20.128
MA0139.10.387
MA0140.10.0132
MA0141.10.313
MA0142.10.179
MA0143.10.256
MA0144.10.112
MA0145.10.384
MA0146.10.199
MA0147.10.0361
MA0148.10.505
MA0149.10.964
MA0150.10.00966
MA0152.10.00451
MA0153.10.542
MA0154.10.268
MA0155.10.129
MA0156.11.05923e-9
MA0157.10.472
MA0159.10.624
MA0160.10.483
MA0162.10.0568
MA0163.10.0157
MA0164.10.9
MA0258.10.182
MA0259.10.0443



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12640

Novel motifP-value
10.745
100.837
1000.945
1010.325
1020.0335
1030.368
1040.918
1050.0723
1060.464
1070.112
1080.396
1090.47
110.603
1100.418
1110.725
1120.51
1130.916
1140.399
1150.00535
1160.085
1170.596
1180.85
1190.523
120.199
1200.954
1210.534
1220.128
1230.00251
1240.334
1250.571
1260.68
1270.645
1280.237
1290.921
130.684
1300.601
1310.971
1320.0761
1330.419
1340.605
1350.759
1360.545
1370.631
1380.491
1390.715
140.677
1400.565
1410.296
1420.907
1430.964
1440.0888
1450.954
1460.502
1470.731
1480.418
1490.00223
150.418
1500.41
1510.385
1520.0712
1530.932
1540.454
1550.355
1560.517
1570.561
1580.0125
1590.495
160.0227
1600.47
1610.621
1620.374
1630.894
1640.246
1650.452
1660.00256
1670.436
1680.627
1690.0305
170.653
180.524
190.00265
20.155
200.49
210.0772
220.115
230.261
240.144
250.446
260.541
270.495
280.191
290.418
30.57
300.155
310.636
325.63663e-20
330.644
340.416
350.926
360.0438
370.147
380.772
390.223
40.145
400.704
410.265
420.765
430.605
440.337
450.566
460.576
470.508
480.977
490.838
50.902
500.292
510.759
520.495
530.302
540.6
550.683
560.947
570.83
580.335
590.0155
60.196
600.67
610.531
620.834
630.276
640.656
650.259
660.0714
670.802
680.662
690.456
70.208
700.111
710.933
720.549
730.0285
740.444
750.733
760.666
770.00205
780.19
791.068e-4
80.432
800.0964
810.74
820.267
830.297
840.221
850.167
860.851
870.673
880.208
890.0365
90.294
900.283
910.728
920.359
930.696
940.542
950.968
960.482
970.318
980.629
990.00656



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12640


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000499 (stromal cell)
0000630 (supportive cell)
0000135 (fibrocyte)
0000386 (attachment cell)
0000255 (eukaryotic cell)
0000388 (tendon cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002384 (connective tissue)
0000479 (tissue)
0007846 (dense regular connective tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000043 (tendon)
0007845 (regular connective tissue)
0002204 (musculoskeletal system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000280 (human tenocyte sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=FF:11765-123I1&oldid=4576712"