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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00004896
|DRA_sample_Accession=CAGE@SAMD00004896
|accession_numbers=CAGE;DRX008339;DRR009211;DRZ000636;DRZ002021
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004896
|accession_numbers=CAGE;DRX008339;DRR009211;DRZ000636;DRZ002021;DRZ011986;DRZ013371
|accession_numbers_RNASeq=sRNA-Seq;DRX037257;DRR041623;DRZ007265
|ancestors_in_anatomy_facet=
|ancestors_in_anatomy_facet=
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000075,CL:0000066,CL:0002371,CL:0000325,CL:0000147,CL:0000710,CL:0000255,CL:0002077,CL:0000148,CL:0002567
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000075,CL:0000066,CL:0002371,CL:0000325,CL:0000147,CL:0000710,CL:0000255,CL:0002077,CL:0000148,CL:0002567
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|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Melanocyte%2520-%2520light%252c%2520donor2.CNhs11383.11351-117H1.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Melanocyte%2520-%2520light%252c%2520donor2.CNhs11383.11351-117H1.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Melanocyte%2520-%2520light%252c%2520donor2.CNhs11383.11351-117H1.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Melanocyte%2520-%2520light%252c%2520donor2.CNhs11383.11351-117H1.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Melanocyte%2520-%2520light%252c%2520donor2.CNhs11383.11351-117H1.hg38.nobarcode.ctss.bed.gz
|id=FF:11351-117H1
|id=FF:11351-117H1
|is_a=EFO:0002091;;FF:0000090
|is_a=EFO:0002091;;FF:0000090
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|library_id=CNhs11383
|library_id=CNhs11383
|library_id_phase_based=2:CNhs11383
|library_id_phase_based=2:CNhs11383
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11351
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10015.AGTTCC.11351
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11351
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10015.AGTTCC.11351
|name=Melanocyte - light, donor2
|name=Melanocyte - light, donor2
|namespace=FANTOM5
|namespace=FANTOM5
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|profile_rnaseq=
|profile_rnaseq=
|profile_srnaseq=SRhi10015,,,
|profile_srnaseq=SRhi10015,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 68: Line 82:
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|sample_category=primary cells
Line 91: Line 106:
|top_motifs=ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:3.25735698376;NFE2L1:2.60575072517;SREBF1,2:2.08690386321;NR5A1,2:2.03771739098;PAX6:2.0033725104;ZNF423:1.77110662212;ESRRA:1.72437594166;HES1:1.6857939808;bHLH_family:1.57900694128;RXR{A,B,G}:1.46533069628;NANOG:1.17020087233;EN1,2:1.15822496778;SOX{8,9,10}:1.13840659576;PBX1:1.11588634771;PAX8:1.07898878684;GTF2A1,2:1.07886838597;NR3C1:1.04412006766;EBF1:1.02486721206;XCPE1{core}:0.881214561699;ESR1:0.863913572757;HOX{A6,A7,B6,B7}:0.850920772726;POU3F1..4:0.850445029173;TFCP2:0.820752729342;TFDP1:0.802151721414;HMX1:0.738410658475;LHX3,4:0.728115649628;SP1:0.684143688794;RORA:0.669771021152;ZNF238:0.64118009625;GFI1:0.617267010397;ARID5B:0.584352545052;NFY{A,B,C}:0.575534794364;AR:0.548786520108;TLX1..3_NFIC{dimer}:0.543412856678;GZF1:0.536966862279;FOX{F1,F2,J1}:0.534652799886;POU2F1..3:0.532322352242;NKX2-3_NKX2-5:0.520779328561;PAX2:0.511675315733;LMO2:0.5011725752;PAX5:0.459582182485;JUN:0.443379671488;RFX2..5_RFXANK_RFXAP:0.432733683942;ZNF148:0.430772583235;TFAP2{A,C}:0.430417100943;HOXA9_MEIS1:0.427452747941;POU1F1:0.419749251958;ZIC1..3:0.398347803627;XBP1:0.352700052919;GFI1B:0.347263261197;HIC1:0.31590541829;TFAP2B:0.292798141674;HNF4A_NR2F1,2:0.285697682834;ZNF143:0.275816851422;SOX5:0.272007471919;EP300:0.267472902707;HOX{A4,D4}:0.240174295559;NFIX:0.233292361417;ZBTB6:0.226014185078;PRRX1,2:0.207941000313;GTF2I:0.161112027406;PAX1,9:0.146130501177;TP53:0.125148986864;CUX2:0.0994937921433;YY1:0.0596488409259;FOX{D1,D2}:0.0552301684187;REST:0.0547457330279;NHLH1,2:0.0397972126846;E2F1..5:0.0360050421112;SOX2:0.0255343525218;HNF1A:0.0148568906594;RUNX1..3:0.0134338165752;OCT4_SOX2{dimer}:0.00604460309331;RXRA_VDR{dimer}:-0.00407360507093;FOXM1:-0.00894347592776;STAT5{A,B}:-0.0112948243079;RFX1:-0.0156460435004;FOSL2:-0.0323354461921;BACH2:-0.0335853618233;MEF2{A,B,C,D}:-0.0338118789696;POU6F1:-0.0457605837731;GATA6:-0.050011564781;NRF1:-0.0852882539498;ONECUT1,2:-0.0969672397959;VSX1,2:-0.124040617164;IKZF1:-0.144311163748;GLI1..3:-0.163925559451;LEF1_TCF7_TCF7L1,2:-0.173989243791;MTF1:-0.186341372191;MYB:-0.192892782427;ELK1,4_GABP{A,B1}:-0.209305969415;NFE2:-0.212773755676;CRX:-0.213226477965;BREu{core}:-0.242707779275;GCM1,2:-0.253315896362;CREB1:-0.288600244168;PAX4:-0.289958170009;IRF7:-0.295185049196;UFEwm:-0.300559870638;SOX17:-0.31186373798;ZFP161:-0.317004057591;FOS_FOS{B,L1}_JUN{B,D}:-0.323954022544;SPI1:-0.325256515465;ETS1,2:-0.328857762344;PPARG:-0.337302013497;HOX{A5,B5}:-0.346166376551;EGR1..3:-0.346630821978;SPIB:-0.361569497556;NFIL3:-0.364197170215;FOXL1:-0.366607758451;RREB1:-0.37776420603;IRF1,2:-0.382971971105;CEBPA,B_DDIT3:-0.391743891819;MED-1{core}:-0.400561140319;TFAP4:-0.43123757329;SNAI1..3:-0.43928297179;NFKB1_REL_RELA:-0.444582757228;FOXA2:-0.456177270227;CDC5L:-0.462071495115;MAFB:-0.462484100311;HAND1,2:-0.47603896205;ATF5_CREB3:-0.477072444218;NFE2L2:-0.483292758287;NANOG{mouse}:-0.489153802681;TGIF1:-0.496946027429;ELF1,2,4:-0.50435070013;STAT1,3:-0.523732210269;TEAD1:-0.534970997702;TLX2:-0.54507835662;FOXP3:-0.54924658952;FOX{I1,J2}:-0.559659241922;TAL1_TCF{3,4,12}:-0.564197729303;ATF4:-0.58872482388;STAT2,4,6:-0.629652531175;MYOD1:-0.633384054509;TOPORS:-0.634684804668;TEF:-0.645905864582;KLF4:-0.654918583561;AHR_ARNT_ARNT2:-0.668943887268;NFATC1..3:-0.679324459392;HLF:-0.698602171905;SRF:-0.753241285181;EVI1:-0.783969544411;NR6A1:-0.785119615575;SMAD1..7,9:-0.793529368449;RBPJ:-0.809226120486;MAZ:-0.810835480343;HBP1_HMGB_SSRP1_UBTF:-0.845592809724;PDX1:-0.855354626408;MZF1:-0.888468616305;MYFfamily:-0.894137160254;ALX4:-0.903415463906;PATZ1:-0.908294190151;MYBL2:-0.912070743834;ADNP_IRX_SIX_ZHX:-0.912161277573;TBP:-0.91282213494;ZEB1:-0.920335130342;DBP:-0.951452187828;PAX3,7:-1.00486182741;ATF2:-1.00627958958;NR1H4:-1.02042651043;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.04304952976;MTE{core}:-1.0536599271;DMAP1_NCOR{1,2}_SMARC:-1.06103005774;NKX6-1,2:-1.0694230853;HMGA1,2:-1.10417896609;PRDM1:-1.12331219806;ATF6:-1.2111441263;TBX4,5:-1.21216128402;PITX1..3:-1.22645350761;BPTF:-1.2376771097;SPZ1:-1.25631823786;T:-1.29926980821;HIF1A:-1.30773389293;FOXQ1:-1.32363995457;HSF1,2:-1.33024897862;NKX3-2:-1.35022412949;FOXO1,3,4:-1.3605036268;ZNF384:-1.389389177;FOXN1:-1.396723139;GATA4:-1.40841899148;IKZF2:-1.6499778207;ZBTB16:-1.66387704017;NKX3-1:-1.70925143793;NKX2-1,4:-1.71351692222;CDX1,2,4:-1.7304338195;AIRE:-1.76093044152;NKX2-2,8:-1.76815110125;FOXP1:-1.85871327121;POU5F1:-1.91855605949;ALX1:-2.4517085752;FOXD3:-2.85523579943
|top_motifs=ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:3.25735698376;NFE2L1:2.60575072517;SREBF1,2:2.08690386321;NR5A1,2:2.03771739098;PAX6:2.0033725104;ZNF423:1.77110662212;ESRRA:1.72437594166;HES1:1.6857939808;bHLH_family:1.57900694128;RXR{A,B,G}:1.46533069628;NANOG:1.17020087233;EN1,2:1.15822496778;SOX{8,9,10}:1.13840659576;PBX1:1.11588634771;PAX8:1.07898878684;GTF2A1,2:1.07886838597;NR3C1:1.04412006766;EBF1:1.02486721206;XCPE1{core}:0.881214561699;ESR1:0.863913572757;HOX{A6,A7,B6,B7}:0.850920772726;POU3F1..4:0.850445029173;TFCP2:0.820752729342;TFDP1:0.802151721414;HMX1:0.738410658475;LHX3,4:0.728115649628;SP1:0.684143688794;RORA:0.669771021152;ZNF238:0.64118009625;GFI1:0.617267010397;ARID5B:0.584352545052;NFY{A,B,C}:0.575534794364;AR:0.548786520108;TLX1..3_NFIC{dimer}:0.543412856678;GZF1:0.536966862279;FOX{F1,F2,J1}:0.534652799886;POU2F1..3:0.532322352242;NKX2-3_NKX2-5:0.520779328561;PAX2:0.511675315733;LMO2:0.5011725752;PAX5:0.459582182485;JUN:0.443379671488;RFX2..5_RFXANK_RFXAP:0.432733683942;ZNF148:0.430772583235;TFAP2{A,C}:0.430417100943;HOXA9_MEIS1:0.427452747941;POU1F1:0.419749251958;ZIC1..3:0.398347803627;XBP1:0.352700052919;GFI1B:0.347263261197;HIC1:0.31590541829;TFAP2B:0.292798141674;HNF4A_NR2F1,2:0.285697682834;ZNF143:0.275816851422;SOX5:0.272007471919;EP300:0.267472902707;HOX{A4,D4}:0.240174295559;NFIX:0.233292361417;ZBTB6:0.226014185078;PRRX1,2:0.207941000313;GTF2I:0.161112027406;PAX1,9:0.146130501177;TP53:0.125148986864;CUX2:0.0994937921433;YY1:0.0596488409259;FOX{D1,D2}:0.0552301684187;REST:0.0547457330279;NHLH1,2:0.0397972126846;E2F1..5:0.0360050421112;SOX2:0.0255343525218;HNF1A:0.0148568906594;RUNX1..3:0.0134338165752;OCT4_SOX2{dimer}:0.00604460309331;RXRA_VDR{dimer}:-0.00407360507093;FOXM1:-0.00894347592776;STAT5{A,B}:-0.0112948243079;RFX1:-0.0156460435004;FOSL2:-0.0323354461921;BACH2:-0.0335853618233;MEF2{A,B,C,D}:-0.0338118789696;POU6F1:-0.0457605837731;GATA6:-0.050011564781;NRF1:-0.0852882539498;ONECUT1,2:-0.0969672397959;VSX1,2:-0.124040617164;IKZF1:-0.144311163748;GLI1..3:-0.163925559451;LEF1_TCF7_TCF7L1,2:-0.173989243791;MTF1:-0.186341372191;MYB:-0.192892782427;ELK1,4_GABP{A,B1}:-0.209305969415;NFE2:-0.212773755676;CRX:-0.213226477965;BREu{core}:-0.242707779275;GCM1,2:-0.253315896362;CREB1:-0.288600244168;PAX4:-0.289958170009;IRF7:-0.295185049196;UFEwm:-0.300559870638;SOX17:-0.31186373798;ZFP161:-0.317004057591;FOS_FOS{B,L1}_JUN{B,D}:-0.323954022544;SPI1:-0.325256515465;ETS1,2:-0.328857762344;PPARG:-0.337302013497;HOX{A5,B5}:-0.346166376551;EGR1..3:-0.346630821978;SPIB:-0.361569497556;NFIL3:-0.364197170215;FOXL1:-0.366607758451;RREB1:-0.37776420603;IRF1,2:-0.382971971105;CEBPA,B_DDIT3:-0.391743891819;MED-1{core}:-0.400561140319;TFAP4:-0.43123757329;SNAI1..3:-0.43928297179;NFKB1_REL_RELA:-0.444582757228;FOXA2:-0.456177270227;CDC5L:-0.462071495115;MAFB:-0.462484100311;HAND1,2:-0.47603896205;ATF5_CREB3:-0.477072444218;NFE2L2:-0.483292758287;NANOG{mouse}:-0.489153802681;TGIF1:-0.496946027429;ELF1,2,4:-0.50435070013;STAT1,3:-0.523732210269;TEAD1:-0.534970997702;TLX2:-0.54507835662;FOXP3:-0.54924658952;FOX{I1,J2}:-0.559659241922;TAL1_TCF{3,4,12}:-0.564197729303;ATF4:-0.58872482388;STAT2,4,6:-0.629652531175;MYOD1:-0.633384054509;TOPORS:-0.634684804668;TEF:-0.645905864582;KLF4:-0.654918583561;AHR_ARNT_ARNT2:-0.668943887268;NFATC1..3:-0.679324459392;HLF:-0.698602171905;SRF:-0.753241285181;EVI1:-0.783969544411;NR6A1:-0.785119615575;SMAD1..7,9:-0.793529368449;RBPJ:-0.809226120486;MAZ:-0.810835480343;HBP1_HMGB_SSRP1_UBTF:-0.845592809724;PDX1:-0.855354626408;MZF1:-0.888468616305;MYFfamily:-0.894137160254;ALX4:-0.903415463906;PATZ1:-0.908294190151;MYBL2:-0.912070743834;ADNP_IRX_SIX_ZHX:-0.912161277573;TBP:-0.91282213494;ZEB1:-0.920335130342;DBP:-0.951452187828;PAX3,7:-1.00486182741;ATF2:-1.00627958958;NR1H4:-1.02042651043;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.04304952976;MTE{core}:-1.0536599271;DMAP1_NCOR{1,2}_SMARC:-1.06103005774;NKX6-1,2:-1.0694230853;HMGA1,2:-1.10417896609;PRDM1:-1.12331219806;ATF6:-1.2111441263;TBX4,5:-1.21216128402;PITX1..3:-1.22645350761;BPTF:-1.2376771097;SPZ1:-1.25631823786;T:-1.29926980821;HIF1A:-1.30773389293;FOXQ1:-1.32363995457;HSF1,2:-1.33024897862;NKX3-2:-1.35022412949;FOXO1,3,4:-1.3605036268;ZNF384:-1.389389177;FOXN1:-1.396723139;GATA4:-1.40841899148;IKZF2:-1.6499778207;ZBTB16:-1.66387704017;NKX3-1:-1.70925143793;NKX2-1,4:-1.71351692222;CDX1,2,4:-1.7304338195;AIRE:-1.76093044152;NKX2-2,8:-1.76815110125;FOXP1:-1.85871327121;POU5F1:-1.91855605949;ALX1:-2.4517085752;FOXD3:-2.85523579943
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11351-117H1;search_select_hide=table117:FF:11351-117H1
}}
}}

Latest revision as of 17:54, 4 June 2020

Name:Melanocyte - light, donor2
Species:Human (Homo sapiens)
Library ID:CNhs11383
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueskin
dev stageinfant
sexmale
ageNeonatal
cell typemelanocyte
cell lineNA
companyCell Applications
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number1607
catalog numberCA104-R10n
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004896
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11383 CAGE DRX008339 DRR009211
Accession ID Hg19

Library idBAMCTSS
CNhs11383 DRZ000636 DRZ002021
Accession ID Hg38

Library idBAMCTSS
CNhs11383 DRZ011986 DRZ013371
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00004896
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10015.AGTTCC sRNA-Seq DRX037257 DRR041623
Accession ID Hg19

Library idBAMCTSS
SRhi10015.AGTTCC DRZ007265


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0844
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.0376
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.26
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.204
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.887
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.699
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.677
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.0663
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.352
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90.655
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived1.084
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11383

Jaspar motifP-value
MA0002.20.217
MA0003.10.245
MA0004.11.77055e-5
MA0006.10.681
MA0007.10.0558
MA0009.10.505
MA0014.10.279
MA0017.10.628
MA0018.20.914
MA0019.10.141
MA0024.10.456
MA0025.10.408
MA0027.10.41
MA0028.10.756
MA0029.10.802
MA0030.10.778
MA0031.10.81
MA0035.20.0194
MA0038.10.0156
MA0039.20.0236
MA0040.10.521
MA0041.10.306
MA0042.10.813
MA0043.10.0366
MA0046.10.516
MA0047.20.919
MA0048.10.949
MA0050.10.668
MA0051.10.679
MA0052.10.0198
MA0055.10.00611
MA0057.10.385
MA0058.12.14797e-10
MA0059.12.30341e-4
MA0060.14.96006e-8
MA0061.10.0321
MA0062.20.38
MA0065.20.0589
MA0066.10.385
MA0067.10.00223
MA0068.10.312
MA0069.10.178
MA0070.12.20598e-5
MA0071.10.442
MA0072.10.942
MA0073.10.929
MA0074.10.0326
MA0076.10.46
MA0077.10.17
MA0078.10.993
MA0079.20.179
MA0080.20.0228
MA0081.10.539
MA0083.10.346
MA0084.10.429
MA0087.10.611
MA0088.10.134
MA0090.10.532
MA0091.10.274
MA0092.10.677
MA0093.17.09823e-6
MA0099.20.54
MA0100.10.628
MA0101.10.182
MA0102.20.0191
MA0103.10.721
MA0104.20.0104
MA0105.10.129
MA0106.10.886
MA0107.10.0531
MA0108.20.472
MA0111.10.369
MA0112.20.621
MA0113.10.746
MA0114.10.0751
MA0115.10.632
MA0116.10.554
MA0117.10.0737
MA0119.10.698
MA0122.10.859
MA0124.10.374
MA0125.10.0202
MA0131.10.324
MA0135.10.0313
MA0136.10.0463
MA0137.20.285
MA0138.20.978
MA0139.10.407
MA0140.10.1
MA0141.10.0107
MA0142.10.168
MA0143.10.648
MA0144.10.159
MA0145.10.266
MA0146.10.0031
MA0147.10.0199
MA0148.10.921
MA0149.10.0852
MA0150.10.978
MA0152.10.0889
MA0153.10.186
MA0154.10.456
MA0155.10.307
MA0156.10.152
MA0157.10.858
MA0159.10.114
MA0160.10.00964
MA0162.10.206
MA0163.10.686
MA0164.10.613
MA0258.10.186
MA0259.10.174



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11383

Novel motifP-value
10.864
100.538
1000.533
1010.0478
1020.0388
1030.0531
1040.283
1050.976
1060.926
1070.666
1080.866
1090.022
110.682
1100.0379
1110.0649
1120.73
1130.0188
1140.571
1150.749
1160.89
1170.271
1180.873
1190.695
120.66
1200.955
1210.295
1220.163
1230.956
1240.895
1250.484
1260.794
1270.645
1280.429
1290.0298
130.367
1300.416
1310.522
1320.412
1330.351
1340.71
1350.268
1360.101
1370.714
1380.91
1390.176
140.935
1400.39
1410.095
1420.975
1430.409
1440.764
1450.672
1463.41269e-4
1470.6
1480.0113
1490.695
150.782
1500.734
1510.861
1520.283
1530.069
1540.0166
1550.654
1560.921
1570.867
1580.567
1590.843
160.377
1600.701
1610.641
1620.048
1630.726
1640.255
1650.18
1660.486
1670.17
1680.215
1690.21
170.419
180.158
190.311
20.933
200.824
210.414
220.011
230.668
240.949
250.358
260.49
270.23
280.273
290.0543
30.886
300.641
310.673
320.0868
330.304
340.236
350.438
360.884
370.66
380.312
390.799
40.601
400.0144
410.927
420.264
430.463
440.979
450.7
460.345
470.675
480.902
490.581
50.6
500.364
510.913
520.797
530.112
540.626
550.447
560.587
570.45
580.128
590.268
60.933
600.823
610.677
620.0293
630.51
640.363
650.0683
660.00564
670.664
680.151
690.709
70.946
700.822
710.729
720.949
730.00748
740.189
750.528
760.887
770.412
780.21
790.647
80.3
800.76
810.856
820.998
830.277
840.151
850.351
860.782
876.4636e-4
880.267
890.506
90.324
900.0226
910.612
920.0136
930.316
940.751
950.0526
960.903
970.196
980.127
990.266



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11383


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000075 (columnar/cuboidal epithelial cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000325 (stuff accumulating cell)
0000147 (pigment cell)
0000710 (neurecto-epithelial cell)
0000255 (eukaryotic cell)
0002077 (ecto-epithelial cell)
0000148 (melanocyte)
0002567 (light melanocyte)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000090 (human light melanocyte sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000133 (neurectodermal cell)
CL:0000221 (ectodermal cell)

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