FF:11353-117H3: Difference between revisions
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{{f5samples | {{f5samples | ||
| | |DRA_sample_Accession=CAGE@SAMD00005579 | ||
| | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005579 | ||
| | |accession_numbers=CAGE;DRX008390;DRR009262;DRZ000687;DRZ002072;DRZ012037;DRZ013422 | ||
| | |accession_numbers_RNASeq=sRNA-Seq;DRX037030;DRR041396;DRZ007038 | ||
|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000055,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000062 | |||
| | |||
|ancestors_in_cell_lineage_facet=CL:0000000 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
| | |ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000127,FF:0000128 | ||
|comment= | |||
|created_by= | |||
|creation_date= | |||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |||
|expression_enrichment_score=chr7:96654133..96654150,-!p1@DLX5!1.91!79.59!DLX5;;chr4:57522513..57522548,-!p4@HOPX!1.85!70.50!HOPX;;chr4:57522598..57522664,-!p3@HOPX!1.76!56.85!HOPX;;chr4:57522674..57522699,-!p5@HOPX!1.57!36.39!HOPX;;chr12:54378923..54378966,+!p1@HOXC10!1.55!34.11!HOXC10;;chr9:132427972..132428056,+!p1@PRRX2!1.54!43.21!PRRX2;;chr9:132427883..132427951,+!p2@PRRX2!1.49!29.56!PRRX2;;chr7:44143978..44143989,+!p2@AEBP1!1.46!50.03!AEBP1;;chr1:170633348..170633399,+!p2@PRRX1!1.45!36.39!PRRX1;;chr7:44143997..44144008,+!p3@AEBP1!1.45!34.11!AEBP1;;chr12:54393880..54393962,+!p1@HOXC9!1.45!27.29!HOXC9;;chr11:46299539..46299620,+!p2@CREB3L1!1.41!40.93!CREB3L1;;chr6:45296048..45296082,+!p1@RUNX2!1.40!27.29!RUNX2;;chr19:13134772..13134822,+!p2@NFIX!1.39!34.11!NFIX;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.38!22.74!HOXC5;;chr7:19157248..19157268,-!p1@TWIST1!1.37!61.40!TWIST1;;chr11:46299199..46299233,+!p1@CREB3L1!1.31!97.79!CREB3L1;;chr1:119530636..119530653,-!p2@TBX15!1.28!18.19!TBX15;;chr16:86600426..86600441,+!p1@FOXC2!1.25!40.93!FOXC2;;chr12:10875658..10875708,-!p2@CSDA!1.23!36.39!CSDA;;chr12:54379029..54379057,+!p2@HOXC10!1.23!15.92!HOXC10;;chrX:106960180..106960197,-!p2@TSC22D3!1.22!59.13!TSC22D3;;chr19:18391615..18391637,-!p5@JUND!1.22!20.47!JUND;;chr15:42749722..42749739,-!p2@ZFP106!1.21!27.29!ZFP106;;chr19:18391708..18391737,-!p7@JUND!1.20!22.74!JUND;;chr1:170632285..170632309,+!p1@PRRX1!1.18!15.92!PRRX1;;chr7:44143925..44143970,+!p1@AEBP1!1.17!304.73!AEBP1;;chr14:61116183..61116208,-!p1@SIX1!1.17!52.30!SIX1;;chr12:10875548..10875563,-!p13@CSDA!1.17!13.64!CSDA;;chr12:54394309..54394336,+!p2@HOXC9!1.17!13.64!HOXC9;;chr7:27196217..27196246,-!p2@HOXA7!1.17!13.64!HOXA7;;chr7:27213872..27213886,-!p4@HOXA10!1.17!13.64!HOXA10;;chr7:27213893..27213954,-!p1@HOXA10!1.17!13.64!HOXA10;;chr7:96654026..96654061,-!p2@DLX5!1.17!13.64!DLX5;;chr19:7584204..7584218,+!p9@ZNF358!1.17!13.64!ZNF358;;chr19:13135914..13135942,+!p19@NFIX!1.17!13.64!NFIX;;chr5:72744594..72744609,-!p1@FOXD1!1.15!59.13!FOXD1;;chr12:10875768..10875808,-!p3@CSDA!1.11!18.19!CSDA;;chr4:57522166..57522260,-!p2@HOPX!1.11!13.64!HOPX;;chr12:10875612..10875631,-!p9@CSDA!1.09!13.64!CSDA;;chr2:45236540..45236577,-!p1@SIX2!1.09!11.37!SIX2;;chr17:46132044..46132080,+!p4@NFE2L1!1.09!11.37!NFE2L1;;chr7:27192185..27192209,-!p1@HOXA3!1.09!11.37!HOXA3;;chr7:96635178..96635181,+!p1@DLX6!1.09!11.37!DLX6;;chr19:46801639..46801699,+!p1@HIF3A!1.09!11.37!HIF3A;;chr1:170632477..170632506,+!p6@PRRX1!1.09!11.37!PRRX1;;chr17:59477233..59477263,+!p1@TBX2!1.08!34.11!TBX2;;chr16:54320101..54320125,-!p4@IRX3!1.08!15.92!IRX3;;chr20:48807648..48807671,+!p9@CEBPB!1.08!15.92!CEBPB;;chr6:1610293..1610310,+!p1@FOXC1!1.07!18.19!FOXC1;;chr5:92919375..92919438,+!p6@NR2F1!1.06!11.37!NR2F1;;chr5:92919100..92919135,+!p3@NR2F1!1.01!11.37!NR2F1;;chr20:48807548..48807572,+!p14@CEBPB!1.01!11.37!CEBPB;;chr11:46333934..46333963,+!p5@CREB3L1!1.00!9.10!CREB3L1;;chr2:176994408..176994492,+!p1@HOXD8!1.00!9.10!HOXD8;;chr7:27196267..27196311,-!p1@HOXA7!1.00!9.10!HOXA7;;chr7:27205136..27205164,-!p1@HOXA9!1.00!9.10!HOXA9;;chr19:56111680..56111716,+!p1@ZNF524!0.99!34.11!ZNF524;;chr14:24837368..24837401,+!p1@NFATC4!0.98!20.47!NFATC4;;chr16:79634595..79634620,-!p2@MAF!0.98!15.92!MAF;;chr17:59477275..59477286,+!p3@TBX2!0.98!11.37!TBX2;;chrX:106960285..106960299,-!p1@TSC22D3!0.97!229.68!TSC22D3;;chr11:46299186..46299195,+!p3@CREB3L1!0.96!9.10!CREB3L1;;chr7:19157043..19157088,-!p2@TWIST1!0.95!20.47!TWIST1;;chr1:170633262..170633285,+!p3@PRRX1!0.95!9.10!PRRX1;;chr5:92920456..92920488,+!p9@NR2F1!0.94!9.10!NR2F1;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.93!77.32!GLIS2;;chr10:64576105..64576133,-!p1@EGR2!0.93!15.92!EGR2;;chr12:26277956..26277980,-!p1@BHLHE41!0.92!27.29!BHLHE41;;chr5:134369905..134369972,-!p1@PITX1!0.92!11.37!PITX1;;chr14:21566731..21566836,-!p1@ZNF219!0.91!79.59!ZNF219;;chr3:178789522..178789564,-!p2@ZMAT3!0.91!54.58!ZMAT3;;chr16:79633894..79633954,-!p3@MAF!0.90!13.64!MAF;;chr15:67391010..67391046,+!p13@SMAD3!0.89!6.82!SMAD3;;chr16:31076332..31076388,-!p3@ZNF668!0.89!6.82!ZNF668;;chr16:54320127..54320148,-!p6@IRX3!0.89!6.82!IRX3;;chr16:54320322..54320343,-!p7@IRX3!0.89!6.82!IRX3;;chr16:86600870..86600921,+!p2@FOXC2!0.89!6.82!FOXC2;;chr4:174451370..174451387,-!p1@HAND2!0.89!6.82!HAND2;;chr1:119530493..119530572,-!p1@TBX15!0.89!6.82!TBX15;;chr1:119530706..119530736,-!p3@TBX15!0.89!6.82!TBX15;;chr1:170632583..170632590,+!p26@PRRX1!0.89!6.82!PRRX1;;chr1:170633058..170633084,+!p5@PRRX1!0.89!6.82!PRRX1;;chr20:30433396..30433414,-!p1@FOXS1!0.89!6.82!FOXS1;;chrY:21906594..21906622,-!p1@KDM5D!0.89!6.82!KDM5D;;chr11:46299443..46299459,+!p4@CREB3L1!0.89!6.82!CREB3L1;;chr12:53625846..53625861,-!p6@RARG!0.89!6.82!RARG;;chr7:27224795..27224840,-!p2@HOXA11!0.89!6.82!HOXA11;;chr7:96635329..96635357,+!p9@DLX6!0.89!6.82!DLX6;;chr13:45151259..45151326,-!p2@TSC22D1!0.88!40.93!TSC22D1;;chr12:26277817..26277863,-!p2@BHLHE41!0.88!9.10!BHLHE41;;chr10:77161650..77161661,-!p4@ZNF503!0.87!9.10!ZNF503;;chr20:39317868..39317884,-!p1@MAFB!0.86!79.59!MAFB;;chrX:106960221..106960236,-!p3@TSC22D3!0.86!18.19!TSC22D3;;chr16:8962202..8962222,-!p3@CARHSP1!0.86!11.37!CARHSP1;;chr20:48808114..48808168,+!p5@CEBPB!0.85!15.92!CEBPB;;chr16:54964740..54964789,+!p1@IRX5!0.85!9.10!IRX5;;chr11:47279248..47279264,+!p3@NR1H3!0.84!6.82!NR1H3;;chr5:92918919..92918942,+!p1@NR2F1!0.83!27.29!NR2F1;;chr12:48298785..48298828,-!p1@VDR!0.82!31.84!VDR;;chr14:105886300..105886316,+!p2@MTA1!0.82!9.10!MTA1;;chr11:8102819..8102845,+!p3@TUB!0.81!6.82!TUB;;chr17:17723746..17723766,-!p5@SREBF1!0.80!9.10!SREBF1;;chr5:72744445..72744466,-!p2@FOXD1!0.80!9.10!FOXD1;;chr20:48807779..48807802,+!p10@CEBPB!0.80!9.10!CEBPB;;chr16:29817841..29817865,+!p1@MAZ!0.79!120.53!MAZ;;chr12:48298765..48298783,-!p2@VDR!0.79!11.37!VDR;;chr19:42788636..42788660,+!p1@CIC!0.79!9.10!CIC;;chr12:125003087..125003141,-!p4@NCOR2!0.79!6.82!NCOR2;;chr10:77161133..77161176,-!p3@ZNF503!0.78!11.37!ZNF503;;chr1:164528297..164528309,+!p9@PBX1!0.78!6.82!PBX1;;chr5:158526459..158526481,-!p2@EBF1!0.78!6.82!EBF1;;chr16:30583017..30583064,-!p1@ZNF688!0.77!27.29!ZNF688;;chr6:85474299..85474324,-!p1@TBX18!0.77!9.10!TBX18;;chr10:77161504..77161530,-!p1@ZNF503!0.76!70.50!ZNF503;;chr16:54320158..54320200,-!p5@IRX3!0.75!6.82!IRX3;;chr6:31515311..31515330,+!p3@NFKBIL1!0.75!6.82!NFKBIL1;;chr8:72756267..72756296,-!p4@MSC!0.74!6.82!MSC;;chr11:113930425..113930471,+!p1@ZBTB16!0.74!6.82!ZBTB16;;chr10:131762504..131762555,-!p1@EBF3!0.74!4.55!EBF3;;chr10:28032421..28032494,-!p2@MKX!0.74!4.55!MKX;;chr10:28034739..28034756,-!p1@MKX!0.74!4.55!MKX;;chr12:10856751..10856757,-!p39@CSDA!0.74!4.55!CSDA;;chr12:10870927..10870966,-!p5@CSDA!0.74!4.55!CSDA;;chr12:10875481..10875504,-!p14@CSDA!0.74!4.55!CSDA;;chr12:51611583..51611612,-!p4@POU6F1!0.74!4.55!POU6F1;;chr12:54380404..54380433,+!p3@HOXC10!0.74!4.55!HOXC10;;chr12:54402745..54402788,+!p1@HOXC8!0.74!4.55!HOXC8;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.74!4.55!HOXC5;;chr12:57522813..57522825,-!p10@STAT6!0.74!4.55!STAT6;;chr13:45150455..45150472,-!p8@TSC22D1!0.74!4.55!TSC22D1;;chr5:134369879..134369898,-!p2@PITX1!0.74!4.55!PITX1;;chr5:92919312..92919334,+!p13@NR2F1!0.74!4.55!NR2F1;;chr5:92920517..92920532,+!p15@NR2F1!0.74!4.55!NR2F1;;chr6:134210243..134210257,+!p1@TCF21!0.74!4.55!TCF21;;chr6:1610178..1610190,+!p5@FOXC1!0.74!4.55!FOXC1;;chr6:45389966..45389977,+!p23@RUNX2!0.74!4.55!RUNX2;;chr7:27212501..27212513,-!p5@HOXA10!0.74!4.55!HOXA10;;chr7:27224842..27224872,-!p1@HOXA11!0.74!4.55!HOXA11;;chr7:96635277..96635301,+!p7@DLX6!0.74!4.55!DLX6;;chr7:96635448..96635470,+!p5@DLX6!0.74!4.55!DLX6;;chr7:96654015..96654018,-!p3@DLX5!0.74!4.55!DLX5;;chr2:28635317..28635334,+!p10@FOSL2!0.74!4.55!FOSL2;;chr2:74726710..74726736,-!p3@LBX2!0.74!4.55!LBX2;;chr2:85980868..85980880,+!p12@ATOH8!0.74!4.55!ATOH8;;chr2:85981008..85981025,+!p7@ATOH8!0.74!4.55!ATOH8;;chr3:157824001..157824078,-!p2@SHOX2!0.74!4.55!SHOX2;;chr4:57522701..57522712,-!p10@HOPX!0.74!4.55!HOPX;;chr17:17740823..17740833,-!p8@SREBF1!0.74!4.55!SREBF1;;chr19:13135731..13135787,+!p10@NFIX!0.74!4.55!NFIX;;chr19:16435735..16435773,+!p4@KLF2!0.74!4.55!KLF2;;chr19:20278043..20278054,+!p2@ZNF486!0.74!4.55!ZNF486;;chr1:170632683..170632696,+!p12@PRRX1!0.74!4.55!PRRX1;;chr21:36421347..36421380,-!p8@RUNX1!0.74!4.55!RUNX1;;chr21:40032558..40032578,-!p5@ERG!0.74!4.55!ERG;;chr1:23885981..23886002,-!p1@ID3!0.73!868.70!ID3;;chr17:46126136..46126152,+!p1@NFE2L1!0.73!254.70!NFE2L1;;chr17:3571863..3571881,-!p1@TAX1BP3!0.72!338.84!TAX1BP3;;chr19:13106214..13106382,+!p1@NFIX!0.72!111.43!NFIX;;chr19:18392236..18392248,-!p2@JUND!0.72!31.84!JUND;;chr7:150974206..150974255,-!p1@SMARCD3!0.72!29.56!SMARCD3;;chr16:79634624..79634642,-!p1@MAF!0.71!18.19!MAF;;chr17:17723626..17723663,-!p4@SREBF1!0.71!9.10!SREBF1;;chr6:21594845..21594908,+!p6@SOX4!0.70!6.82!SOX4;;chr19:49140572..49140594,-!p2@DBP!0.70!6.82!DBP;;chr7:14028488..14028516,-!p2@ETV1!0.70!4.55!ETV1;;chr22:29196433..29196445,-!p4@XBP1!0.70!4.55!XBP1;;chr19:36545128..36545203,-!p1@THAP8!0.69!20.47!THAP8;;chr19:18392250..18392260,-!p4@JUND!0.69!13.64!JUND;;chr19:18391593..18391611,-!p6@JUND!0.69!6.82!JUND;;chr19:36980756..36980795,-!p3@ZNF566!0.69!6.82!ZNF566;;chr9:110252074..110252079,-!p3@KLF4!0.69!6.82!KLF4;;chr22:41735880..41735903,+!p5@ZC3H7B!0.69!4.55!ZC3H7B;;chr2:231084820..231084836,-!p5@SP110!0.69!4.55!SP110;;chr14:61116168..61116180,-!p2@SIX1!0.69!4.55!SIX1;;chr14:75894714..75894733,+!p1@JDP2!0.68!122.80!JDP2;;chr6:31515337..31515420,+!p1@NFKBIL1!0.68!79.59!NFKBIL1;;chr17:79885633..79885645,-!p4@MAFG!0.68!6.82!MAFG;;chr5:72743793..72743855,-!p4@FOXD1!0.68!4.55!FOXD1;;chr8:146024397..146024416,+!p2@ZNF517!0.68!4.55!ZNF517;;chr2:46524865..46524870,+!p9@EPAS1!0.68!4.55!EPAS1;;chr19:56154958..56155027,+!p1@ZNF581!0.67!140.99!ZNF581;;chr17:3571887..3571918,-!p2@TAX1BP3!0.67!47.76!TAX1BP3;;chr11:47279504..47279563,+!p1@NR1H3!0.67!9.10!NR1H3;;chr12:6798523..6798548,-!p6@ZNF384!0.67!6.82!ZNF384;;chr19:58666441..58666478,-!p2@ZNF329!0.67!6.82!ZNF329;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146..67358157,+!p7@SMAD3!0.30!2.27!SMAD3;;chr17:15689487..15689505,+!p@chr17:15689487..15689505,+!0.30!2.27!MEIS3P1;;chr18:5296138..5296159,-!p3@ZFP161!0.30!2.27!ZFP161;;chr19:12075844..12075880,+!p3@ZNF763!0.30!2.27!ZNF763;;chr19:12476469..12476509,-!p2@ZNF442!0.30!2.27!ZNF442;;chr9:4299552..4299598,-!p5@GLIS3!0.30!2.27!GLIS3;;chr7:148844581..148844606,+!p2@ZNF398!0.30!2.27!ZNF398;;chr19:45261550..45261641,+!p6@BCL3!0.30!2.27!BCL3;;chr19:56904947..56904975,-!p2@ZNF582!0.30!2.27!ZNF582;;chr20:50808252..50808264,-!p4@ZFP64!0.30!2.27!ZFP64;;chr19:59031131..59031193,-!p1@ZBTB45!0.29!22.74!ZBTB45;;chr18:22932080..22932170,-!p1@ZNF521!0.29!6.82!ZNF521;;chr19:2944907..2944981,-!p1@ZNF77!0.29!6.82!ZNF77;;chr8:77593474..77593612,+!p1@ZFHX4!0.29!6.82!ZFHX4;;chr9:116638565..116638606,+!p1@ZNF618!0.29!6.82!ZNF618;;chr19:52674696..52674758,-!p1@ZNF836!0.29!4.55!ZNF836;;chr7:113726357..113726443,+!p1@FOXP2!0.29!2.27!FOXP2;;chr7:137564014..137564042,-!p8@CREB3L2!0.29!2.27!CREB3L2;;chr12:3068501..3068515,+!p4@TEAD4!0.29!2.27!TEAD4;;chr14:61191049..61191080,-!p2@SIX4!0.29!2.27!SIX4;;chr16:88636835..88636846,+!p2@ZC3H18!0.29!2.27!ZC3H18;;chr18:32924431..32924440,-!p2@ZNF24!0.29!2.27!ZNF24;;chr19:17356436..17356481,-!p3@NR2F6!0.29!2.27!NR2F6;;chr2:178129414..178129517,-!p1@NFE2L2!0.28!68.22!NFE2L2;;chr9:110252035..110252057,-!p1@KLF4!0.28!27.29!KLF4;;chr10:63809106..63809127,+!p1@ARID5B!0.28!22.74!ARID5B;;chr6:43139153..43139232,+!p1@SRF!0.28!15.92!SRF;;chr5:178286925..178287007,+!p1@ZNF354B!0.28!9.10!ZNF354B;;chr18:45456930..45456967,-!p2@SMAD2!0.28!9.10!SMAD2;;chrX:48900899..48900917,-!p2@TFE3!0.28!6.82!TFE3;;chr19:57752022..57752108,+!p1@ZNF805!0.28!6.82!ZNF805;;chr1:211433275..211433335,+!p2@RCOR3!0.28!4.55!RCOR3;;chr16:67062996..67063016,+!p3@CBFB!0.28!4.55!CBFB;;chr7:148892581..148892604,+!p3@ZNF282!0.28!4.55!ZNF282;;chr5:178368186..178368238,+!p1@ZNF454!0.28!2.27!ZNF454;;chr8:123793988..123794016,+!p1@ZHX2!0.28!2.27!ZHX2;;chr19:56988677..56988729,-!p1@ZNF667!0.28!2.27!ZNF667;;chr1:249132608..249132628,+!p5@ZNF672!0.28!2.27!ZNF672;;chr1:43148625..43148710,+!p3@YBX1!0.28!2.27!YBX1;;chr1:6845489..6845494,+!p4@CAMTA1!0.28!2.27!CAMTA1;;chr21:34143999..34144016,-!p4@GCFC1!0.28!2.27!GCFC1;;chr2:46524878..46524891,+!p3@EPAS1!0.28!2.27!EPAS1;;chr3:141820622..141820635,-!p5@TFDP2!0.28!2.27!TFDP2;;chr3:150126038..150126052,+!p8@TSC22D2!0.28!2.27!TSC22D2;;chr3:52001396..52001425,-!p4@PCBP4!0.28!2.27!PCBP4;;chr4:206390..206444,+!p1@ZNF876P!0.28!2.27!ZNF876P;;chr17:40719073..40719080,+!p2@MLX!0.28!2.27!MLX;;chr17:42297282..42297300,-!p9@UBTF!0.28!2.27!UBTF;;chr14:64970427..64970450,-!p5@ZBTB25!0.28!2.27!ZBTB25;;chr2:191878874..191878938,-!p1@STAT1!0.27!90.96!STAT1;;chr3:185826855..185826911,-!p1@ETV5!0.27!45.48!ETV5;;chr16:29817665..29817719,+!p3@MAZ!0.27!25.01!MAZ;;chr20:62258402..62258464,-!p1@GMEB2!0.27!18.19!GMEB2;;chr20:62601243..62601291,-!p1@ZNF512B!0.27!15.92!ZNF512B;;chr17:61920280..61920343,-!p2@SMARCD2!0.27!15.92!SMARCD2;;chr1:41157266..41157314,+!p3@NFYC!0.27!13.64!NFYC;;chr19:58514129..58514205,-!p1@ZNF606!0.27!9.10!ZNF606;;chr6:151712673..151712709,-!p1@ZBTB2!0.27!9.10!ZBTB2;;chr6:28220023..28220053,-!p1@ZKSCAN4!0.27!6.82!ZKSCAN4;;chr3:48282587..48282603,+!p1@ZNF589!0.27!6.82!ZNF589;;chr22:20748434..20748455,+!p1@ZNF74!0.27!4.55!ZNF74;;chr1:164528384..164528409,+!p3@PBX1!0.27!4.55!PBX1;;chr19:55987998..55988026,+!p2@ZNF628!0.27!2.27!ZNF628;;chr16:3185024..3185045,+!p2@ZNF213!0.27!2.27!ZNF213;;chr7:148823387..148823440,-!p1@ZNF425!0.27!2.27!ZNF425;;chr17:40719102..40719141,+!p1@MLX!0.26!52.30!MLX;;chr6:35464817..35464894,-!p1@TEAD3!0.26!25.01!TEAD3;;chr6:32095968..32096032,-!p1@ATF6B!0.26!13.64!ATF6B;;chr6:12011943..12012015,+!p2@HIVEP1!0.26!4.55!HIVEP1;;chr14:89883412..89883478,-!p3@FOXN3!0.26!4.55!FOXN3;;chr17:38256877..38256900,-!p2@NR1D1!0.26!4.55!NR1D1;;chr15:56535468..56535521,-!p2@RFX7!0.26!2.27!RFX7;;chr15:96874063..96874074,+!p10@NR2F2!0.26!2.27!NR2F2;;chr1:33004734..33004807,+!p2@ZBTB8A!0.26!2.27!ZBTB8A;;chr20:39946400..39946423,-!p3@ZHX3!0.26!2.27!ZHX3;;chrX:48900782..48900793,-!p3@TFE3!0.26!2.27!TFE3;;chr6:31869828..31869880,-!p1@ZBTB12!0.26!2.27!ZBTB12;;chr11:130184672..130184696,-!p3@ZBTB44!0.26!2.27!ZBTB44;;chr11:85376097..85376108,-!p2@CREBZF!0.26!2.27!CREBZF;;chr18:47814032..47814079,-!p1@CXXC1!0.25!29.56!CXXC1;;chr19:4065485..4065546,-!p2@ZBTB7A!0.25!13.64!ZBTB7A;;chr1:59249688..59249703,-!p3@JUN!0.25!9.10!JUN;;chr7:148892629..148892651,+!p2@ZNF282!0.25!9.10!ZNF282;;chr8:146176199..146176272,-!p1@ZNF16!0.25!6.82!ZNF16;;chr6:126102292..126102329,+!p3@NCOA7!0.25!4.55!NCOA7;;chr19:53758058..53758088,-!p2@ZNF677!0.25!4.55!ZNF677;;chr19:58838369..58838439,+!p1@ZSCAN22!0.25!4.55!ZSCAN22;;chr1:151253991..151254031,+!p2@ZNF687!0.25!2.27!ZNF687;;chr1:33721873..33721898,+!p3@ZNF362!0.25!2.27!ZNF362;;chr15:96874145..96874166,+!p7@NR2F2!0.25!2.27!NR2F2;;chr19:20150268..20150298,-!p2@ZNF682!0.25!2.27!ZNF682;;chr11:695215..695231,-!p2@DEAF1!0.25!2.27!DEAF1;;chr12:66218183..66218209,+!p4@HMGA2!0.25!2.27!HMGA2;;chr5: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| |||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000062 | |||
|ffid_belonging_in_development=CL:0000134,CL:0000335 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
Line 66: | Line 43: | ||
|fonse_treatment= | |fonse_treatment= | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|top_motifs= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Osteoblast%2520-%2520differentiated%252c%2520donor2.CNhs11980.11353-117H3.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Osteoblast%2520-%2520differentiated%252c%2520donor2.CNhs11980.11353-117H3.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Osteoblast%2520-%2520differentiated%252c%2520donor2.CNhs11980.11353-117H3.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Osteoblast%2520-%2520differentiated%252c%2520donor2.CNhs11980.11353-117H3.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Osteoblast%2520-%2520differentiated%252c%2520donor2.CNhs11980.11353-117H3.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11353-117H3 | |||
|is_a=EFO:0002091;;FF:0000127;;FF:0000128 | |||
|is_obsolete= | |||
|library_id=CNhs11980 | |||
|library_id_phase_based=2:CNhs11980 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11353 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10003.CGTACG.11353 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11353 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10003.CGTACG.11353 | |||
|name=Osteoblast - differentiated, donor2 | |||
|namespace=FANTOM5 | |||
|part_of= | |||
|profile_cagescan=,,, | |||
|profile_hcage=CNhs11980,LSID836,release011,COMPLETED | |||
|profile_rnaseq= | |||
|profile_srnaseq=SRhi10003,,, | |||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.160318030086386,0,0.729328955427967,1.10479543155348,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,1.13040460847698,0,0,0.382132039276165,0,0,0,0,0,0,0,0,0,0,0,0,0.396169473876633,0.955940178395003,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0.744148200512376,0,0.0215560044461029,0,1.13137014350244,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.216031315860083,0,0,0,0.126088944897357,0.160876697560319,0,0.515088629055027,0,0,-0.0980353512377064,0.705534944325875,0,0,0,0,0,0,0.744148200512376,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0,0,0,0.535029046856754,0.733233804579688,0,0,0,0,0,0 | |||
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| |||
|rna_box=117 | |||
|rna_catalog_number=CA406D-R10f | |||
|rna_concentration=0.41 | |||
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0 | |||
|rna_lot_number=1424 | |||
|rna_od260/230= | |||
|rna_od260/280= | |||
|rna_position=H3 | |||
|rna_rin= | |||
|rna_sample_type=total RNA | |||
|rna_tube_id=117H3 | |||
|rna_weight_ug=10 | |||
|rnaseq_library_id=SRhi10003.CGTACG | |||
|sample_age=embryo 22week | |||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |||
|sample_cell_line= | |||
|sample_cell_lot=N/A | |||
|sample_cell_type=osteocyte | |||
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest) | |||
|sample_company=Cell Applications | |||
|sample_description= | |||
|sample_dev_stage=22 weeks old fetus | |||
|sample_disease= | |||
|sample_donor(cell lot)= | |||
|sample_ethnicity=U | |||
|sample_experimental_condition= | |||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;3.21197798757309e-278!GO:0005737;cytoplasm;3.59218102438898e-176!GO:0044444;cytoplasmic part;7.02688024483716e-144!GO:0043226;organelle;3.35081774912401e-106!GO:0043229;intracellular organelle;4.69200132311535e-106!GO:0043231;intracellular membrane-bound organelle;4.69200132311535e-106!GO:0043227;membrane-bound organelle;8.98622276133899e-106!GO:0044422;organelle part;1.94222324058923e-92!GO:0044446;intracellular organelle part;1.9411689171655e-91!GO:0005739;mitochondrion;3.0595309985487e-68!GO:0032991;macromolecular complex;2.02734346114772e-66!GO:0030529;ribonucleoprotein complex;8.39696536772402e-66!GO:0005515;protein binding;9.45767274518311e-62!GO:0031090;organelle membrane;5.03281225573852e-51!GO:0005840;ribosome;1.26373063660738e-49!GO:0009058;biosynthetic process;1.3535280220406e-46!GO:0044237;cellular metabolic process;2.73349669674543e-45!GO:0003735;structural constituent of ribosome;1.23662014555414e-44!GO:0044238;primary metabolic process;1.24702414374537e-44!GO:0043233;organelle lumen;4.04704095939119e-44!GO:0031974;membrane-enclosed lumen;4.04704095939119e-44!GO:0044429;mitochondrial part;3.39521060897609e-43!GO:0006412;translation;2.24466844891968e-42!GO:0019538;protein metabolic process;5.05413372628315e-41!GO:0033279;ribosomal subunit;3.43810072909048e-40!GO:0009059;macromolecule biosynthetic process;6.88167242069907e-40!GO:0003723;RNA binding;3.94025037733652e-39!GO:0044249;cellular biosynthetic process;6.38654853722024e-39!GO:0005829;cytosol;2.00053331249278e-37!GO:0044260;cellular macromolecule metabolic process;4.19192124477811e-37!GO:0044267;cellular protein metabolic process;1.19581216654255e-35!GO:0043170;macromolecule metabolic process;8.3435871062163e-35!GO:0044428;nuclear part;1.19765494294681e-32!GO:0031967;organelle envelope;1.70740077079229e-32!GO:0043234;protein complex;1.8592653118428e-32!GO:0031975;envelope;3.26653653788494e-32!GO:0015031;protein transport;3.5334395488878e-32!GO:0033036;macromolecule localization;6.59602647921504e-32!GO:0045184;establishment of protein localization;6.14157491676358e-31!GO:0008104;protein localization;1.38468107238335e-30!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.13540141092496e-29!GO:0016043;cellular component organization and biogenesis;1.20462063179795e-29!GO:0005740;mitochondrial envelope;2.57380686298601e-29!GO:0031966;mitochondrial membrane;9.78649591700599e-28!GO:0019866;organelle inner membrane;7.60498653561258e-27!GO:0006396;RNA processing;6.48166733680362e-26!GO:0005743;mitochondrial inner membrane;1.21865098145326e-25!GO:0005783;endoplasmic reticulum;9.47012577139705e-24!GO:0044445;cytosolic part;1.79207425087714e-22!GO:0046907;intracellular transport;2.88478652925744e-22!GO:0016071;mRNA metabolic process;3.14262951611143e-22!GO:0006119;oxidative phosphorylation;5.32929384969741e-22!GO:0015934;large ribosomal subunit;4.97139958595753e-21!GO:0065003;macromolecular complex assembly;9.39124775496511e-21!GO:0044432;endoplasmic reticulum part;2.14029444222542e-20!GO:0015935;small ribosomal subunit;3.65794359381251e-20!GO:0006886;intracellular protein transport;7.45749247667721e-20!GO:0044455;mitochondrial membrane part;8.81298051509357e-20!GO:0031981;nuclear lumen;9.62483113732817e-20!GO:0012505;endomembrane system;1.89547528515023e-19!GO:0008380;RNA splicing;3.5042534150053e-19!GO:0048770;pigment granule;4.74188066968294e-19!GO:0042470;melanosome;4.74188066968294e-19!GO:0022613;ribonucleoprotein complex biogenesis and assembly;9.20747384721974e-19!GO:0006397;mRNA processing;9.6032844732237e-19!GO:0051186;cofactor metabolic process;1.46962997085131e-18!GO:0006457;protein folding;7.55454997966428e-18!GO:0031980;mitochondrial lumen;8.90784411781701e-18!GO:0005759;mitochondrial matrix;8.90784411781701e-18!GO:0022607;cellular component assembly;1.44253220988794e-17!GO:0005746;mitochondrial respiratory chain;1.53657919659489e-17!GO:0005794;Golgi apparatus;2.11374502949348e-17!GO:0005634;nucleus;2.49024635999665e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.54748022070191e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);3.72358153758018e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);7.24194552576644e-15!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;7.30531117674257e-15!GO:0016462;pyrophosphatase activity;8.59811523590648e-15!GO:0016817;hydrolase activity, acting on acid anhydrides;8.96721390199451e-15!GO:0050136;NADH dehydrogenase (quinone) activity;9.34023947749703e-15!GO:0003954;NADH dehydrogenase activity;9.34023947749703e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;9.34023947749703e-15!GO:0006732;coenzyme metabolic process;9.69003664842714e-15!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.05288431971515e-14!GO:0005789;endoplasmic reticulum membrane;2.12790371516164e-14!GO:0005681;spliceosome;4.66680780847651e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;5.80890154306781e-14!GO:0005761;mitochondrial ribosome;5.98385232439492e-14!GO:0000313;organellar ribosome;5.98385232439492e-14!GO:0017111;nucleoside-triphosphatase activity;1.11305336678688e-13!GO:0016491;oxidoreductase activity;2.76934245464713e-13!GO:0000502;proteasome complex (sensu Eukaryota);3.23447515908093e-13!GO:0043228;non-membrane-bound organelle;4.01825666695395e-13!GO:0043232;intracellular non-membrane-bound organelle;4.01825666695395e-13!GO:0042775;organelle ATP synthesis coupled electron transport;5.76447049647206e-13!GO:0042773;ATP synthesis coupled electron transport;5.76447049647206e-13!GO:0030964;NADH dehydrogenase complex (quinone);5.86265008125317e-13!GO:0045271;respiratory chain complex I;5.86265008125317e-13!GO:0005747;mitochondrial respiratory chain complex I;5.86265008125317e-13!GO:0051082;unfolded protein binding;6.38677146209539e-13!GO:0006996;organelle organization and biogenesis;9.9078331526713e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.22071815519188e-12!GO:0051649;establishment of cellular localization;2.52926058926137e-12!GO:0022618;protein-RNA complex assembly;3.03612625632613e-12!GO:0051641;cellular localization;3.63709162907421e-12!GO:0006605;protein targeting;3.6915953299507e-12!GO:0008134;transcription factor binding;1.14536988210477e-11!GO:0005654;nucleoplasm;2.42408314121388e-11!GO:0009055;electron carrier activity;4.01267710112127e-11!GO:0008135;translation factor activity, nucleic acid binding;4.66607445147563e-11!GO:0043285;biopolymer catabolic process;1.32896832030019e-10!GO:0016874;ligase activity;1.49600382244883e-10!GO:0009057;macromolecule catabolic process;1.50629205640797e-10!GO:0044248;cellular catabolic process;1.7182475245435e-10!GO:0048193;Golgi vesicle transport;1.77472864347412e-10!GO:0012501;programmed cell death;3.35239780836638e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;4.16120807214211e-10!GO:0044451;nucleoplasm part;4.85592436056273e-10!GO:0044265;cellular macromolecule catabolic process;5.31460192669599e-10!GO:0010467;gene expression;7.04087903567566e-10!GO:0006915;apoptosis;1.07192531627953e-09!GO:0005793;ER-Golgi intermediate compartment;1.17907552670688e-09!GO:0005730;nucleolus;1.44110671960355e-09!GO:0008219;cell death;2.06220385805727e-09!GO:0016265;death;2.06220385805727e-09!GO:0051188;cofactor biosynthetic process;2.50432539130739e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;3.16931096670695e-09!GO:0015078;hydrogen ion transmembrane transporter activity;3.32150569314531e-09!GO:0005773;vacuole;3.5919775149986e-09!GO:0006091;generation of precursor metabolites and energy;3.65683061791024e-09!GO:0016192;vesicle-mediated transport;3.73099527407726e-09!GO:0006512;ubiquitin cycle;4.37262565047177e-09!GO:0043283;biopolymer metabolic process;5.03790119138146e-09!GO:0030163;protein catabolic process;9.4657314110575e-09!GO:0009150;purine ribonucleotide metabolic process;9.78690423534785e-09!GO:0009259;ribonucleotide metabolic process;1.19746778569061e-08!GO:0006163;purine nucleotide metabolic process;1.24054803354693e-08!GO:0003743;translation initiation factor activity;2.08013365473778e-08!GO:0009152;purine ribonucleotide biosynthetic process;2.37529095480551e-08!GO:0015986;ATP synthesis coupled proton transport;2.42680730217243e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.42680730217243e-08!GO:0006164;purine nucleotide biosynthetic process;3.22059354731697e-08!GO:0019829;cation-transporting ATPase activity;3.30187036926635e-08!GO:0009060;aerobic respiration;4.01133292300588e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;4.59842320375952e-08!GO:0009144;purine nucleoside triphosphate metabolic process;4.59842320375952e-08!GO:0009141;nucleoside triphosphate metabolic process;4.59842320375952e-08!GO:0009199;ribonucleoside triphosphate metabolic process;4.94274035256225e-08!GO:0051603;proteolysis involved in cellular protein catabolic process;5.78701102580732e-08!GO:0000323;lytic vacuole;5.98024195979632e-08!GO:0005764;lysosome;5.98024195979632e-08!GO:0006413;translational initiation;6.01851960301434e-08!GO:0044431;Golgi apparatus part;6.04061026051889e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;6.27613331290574e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;6.27613331290574e-08!GO:0009142;nucleoside triphosphate biosynthetic process;7.04677118008329e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;7.04677118008329e-08!GO:0009260;ribonucleotide biosynthetic process;7.57367317751617e-08!GO:0000166;nucleotide binding;7.57945879275955e-08!GO:0005788;endoplasmic reticulum lumen;8.06082895991586e-08!GO:0019941;modification-dependent protein catabolic process;8.50679150031505e-08!GO:0043632;modification-dependent macromolecule catabolic process;8.50679150031505e-08!GO:0044257;cellular protein catabolic process;8.90794400789373e-08!GO:0006446;regulation of translational initiation;1.14550131606961e-07!GO:0043412;biopolymer modification;1.15636561043509e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.20291280581804e-07!GO:0000398;nuclear mRNA splicing, via spliceosome;1.43717040027634e-07!GO:0000375;RNA splicing, via transesterification reactions;1.43717040027634e-07!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.43717040027634e-07!GO:0006511;ubiquitin-dependent protein catabolic process;1.58441857463948e-07!GO:0046034;ATP metabolic process;1.69741741600899e-07!GO:0006754;ATP biosynthetic process;1.76748327228646e-07!GO:0006753;nucleoside phosphate metabolic process;1.76748327228646e-07!GO:0003712;transcription cofactor activity;1.84527500727329e-07!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.85066242082859e-07!GO:0017038;protein import;1.93963045615756e-07!GO:0005768;endosome;2.58978000590207e-07!GO:0016469;proton-transporting two-sector ATPase complex;2.73670262730857e-07!GO:0045333;cellular respiration;2.91555471647603e-07!GO:0003924;GTPase activity;2.92431721047293e-07!GO:0008565;protein transporter activity;2.99148630970001e-07!GO:0042254;ribosome biogenesis and assembly;3.28091118764616e-07!GO:0006913;nucleocytoplasmic transport;4.42015278442016e-07!GO:0009108;coenzyme biosynthetic process;4.46677276007022e-07!GO:0006464;protein modification process;4.52084244492106e-07!GO:0048523;negative regulation of cellular process;5.16721333617299e-07!GO:0009056;catabolic process;5.64630601443673e-07!GO:0016023;cytoplasmic membrane-bound vesicle;6.37774895005342e-07!GO:0006259;DNA metabolic process;6.93750710825485e-07!GO:0051169;nuclear transport;7.14983291069899e-07!GO:0031988;membrane-bound vesicle;9.78511632240183e-07!GO:0042623;ATPase activity, coupled;1.03262623524617e-06!GO:0016887;ATPase activity;1.11361571843322e-06!GO:0044262;cellular carbohydrate metabolic process;1.24965491333077e-06!GO:0006461;protein complex assembly;1.34626243514783e-06!GO:0045786;negative regulation of progression through cell cycle;1.38688259003484e-06!GO:0009117;nucleotide metabolic process;1.39324010772772e-06!GO:0003714;transcription corepressor activity;1.58151150660323e-06!GO:0051187;cofactor catabolic process;2.10468404250363e-06!GO:0031252;leading edge;2.12668568447289e-06!GO:0008639;small protein conjugating enzyme activity;2.29907171109364e-06!GO:0048519;negative regulation of biological process;2.7064775392625e-06!GO:0030120;vesicle coat;2.9885108845778e-06!GO:0030662;coated vesicle membrane;2.9885108845778e-06!GO:0016049;cell growth;3.31888223750146e-06!GO:0006099;tricarboxylic acid cycle;3.33420376579376e-06!GO:0046356;acetyl-CoA catabolic process;3.33420376579376e-06!GO:0007005;mitochondrion organization and biogenesis;3.47126450003294e-06!GO:0005839;proteasome core complex (sensu Eukaryota);3.72295064883555e-06!GO:0045259;proton-transporting ATP synthase complex;3.81544238513426e-06!GO:0048475;coated membrane;3.85456393966404e-06!GO:0030117;membrane coat;3.85456393966404e-06!GO:0008361;regulation of cell size;3.9636613063937e-06!GO:0000139;Golgi membrane;4.4006975077918e-06!GO:0017076;purine nucleotide binding;4.73573656678766e-06!GO:0043067;regulation of programmed cell death;4.73573656678766e-06!GO:0032553;ribonucleotide binding;4.73573656678766e-06!GO:0032555;purine ribonucleotide binding;4.73573656678766e-06!GO:0004842;ubiquitin-protein ligase activity;4.84022646745915e-06!GO:0005770;late endosome;4.84022646745915e-06!GO:0009109;coenzyme catabolic process;5.20516183005832e-06!GO:0005762;mitochondrial large ribosomal subunit;5.50044267567436e-06!GO:0000315;organellar large ribosomal subunit;5.50044267567436e-06!GO:0006752;group transfer coenzyme metabolic process;6.03161121621489e-06!GO:0042981;regulation of apoptosis;6.1917415032027e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;6.45302292208768e-06!GO:0004812;aminoacyl-tRNA ligase activity;6.45302292208768e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;6.45302292208768e-06!GO:0016787;hydrolase activity;8.03244533227691e-06!GO:0016879;ligase activity, forming carbon-nitrogen bonds;8.59746956266848e-06!GO:0016604;nuclear body;9.28067429039894e-06!GO:0019787;small conjugating protein ligase activity;9.3947212545354e-06!GO:0045454;cell redox homeostasis;9.57897939058388e-06!GO:0006084;acetyl-CoA metabolic process;9.95273220747648e-06!GO:0006888;ER to Golgi vesicle-mediated transport;1.0009276563515e-05!GO:0001558;regulation of cell growth;1.0214396300219e-05!GO:0008654;phospholipid biosynthetic process;1.21467617572906e-05!GO:0005635;nuclear envelope;1.35120606415663e-05!GO:0043038;amino acid activation;1.35682107839072e-05!GO:0006418;tRNA aminoacylation for protein translation;1.35682107839072e-05!GO:0043039;tRNA aminoacylation;1.35682107839072e-05!GO:0016853;isomerase activity;1.4261091842141e-05!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.48344318528565e-05!GO:0006916;anti-apoptosis;1.78398683136538e-05!GO:0051246;regulation of protein metabolic process;1.78398683136538e-05!GO:0016564;transcription repressor activity;1.7911832111779e-05!GO:0031982;vesicle;1.92903588490165e-05!GO:0008610;lipid biosynthetic process;2.04154673096738e-05!GO:0031410;cytoplasmic vesicle;2.08737616736189e-05!GO:0051789;response to protein stimulus;2.11313853160265e-05!GO:0006986;response to unfolded protein;2.11313853160265e-05!GO:0043069;negative regulation of programmed cell death;2.20125974467748e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;2.52994351486412e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;2.53907866008871e-05!GO:0015399;primary active transmembrane transporter activity;2.53907866008871e-05!GO:0004298;threonine endopeptidase activity;2.71475976453362e-05!GO:0005905;coated pit;2.75586902958762e-05!GO:0030532;small nuclear ribonucleoprotein complex;3.69622753012317e-05!GO:0006082;organic acid metabolic process;3.78461425712122e-05!GO:0031965;nuclear membrane;3.78689198757773e-05!GO:0005525;GTP binding;3.94385244894995e-05!GO:0019752;carboxylic acid metabolic process;4.4815072608993e-05!GO:0016881;acid-amino acid ligase activity;4.50613718976828e-05!GO:0043066;negative regulation of apoptosis;4.68532218937736e-05!GO:0051726;regulation of cell cycle;4.70151945601771e-05!GO:0015980;energy derivation by oxidation of organic compounds;4.90944156556091e-05!GO:0000074;regulation of progression through cell cycle;4.93274920094825e-05!GO:0019843;rRNA binding;5.18939155207392e-05!GO:0006399;tRNA metabolic process;5.58954751351808e-05!GO:0022890;inorganic cation transmembrane transporter activity;5.78398370968841e-05!GO:0044440;endosomal part;5.78724699778657e-05!GO:0010008;endosome membrane;5.78724699778657e-05!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;6.35630069254983e-05!GO:0005798;Golgi-associated vesicle;0.000104888129021825!GO:0006364;rRNA processing;0.000106257549538433!GO:0016126;sterol biosynthetic process;0.000106901797798058!GO:0016072;rRNA metabolic process;0.00010744160277124!GO:0005048;signal sequence binding;0.000122918515359293!GO:0005791;rough endoplasmic reticulum;0.000131993695615107!GO:0043687;post-translational protein modification;0.000173621459657835!GO:0032561;guanyl ribonucleotide binding;0.000182713786005939!GO:0019001;guanyl nucleotide binding;0.000182713786005939!GO:0033116;ER-Golgi intermediate compartment membrane;0.000195868671393538!GO:0043492;ATPase activity, coupled to movement of substances;0.000204448231342326!GO:0030133;transport vesicle;0.000209169919830565!GO:0040008;regulation of growth;0.000216872447080909!GO:0006325;establishment and/or maintenance of chromatin architecture;0.000216872447080909!GO:0016607;nuclear speck;0.000219751830544899!GO:0051170;nuclear import;0.000219751830544899!GO:0006606;protein import into nucleus;0.000219751830544899!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000239518267854571!GO:0030867;rough endoplasmic reticulum membrane;0.000243975059599864!GO:0065004;protein-DNA complex assembly;0.000305517193901687!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000312612995835101!GO:0000314;organellar small ribosomal subunit;0.000319073288835431!GO:0005763;mitochondrial small ribosomal subunit;0.000319073288835431!GO:0005975;carbohydrate metabolic process;0.00034267222952662!GO:0044453;nuclear membrane part;0.000347047238477944!GO:0016859;cis-trans isomerase activity;0.000385920916184813!GO:0006118;electron transport;0.000412090193033479!GO:0003697;single-stranded DNA binding;0.000413719708069179!GO:0030176;integral to endoplasmic reticulum membrane;0.00042152848989416!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000427054694774395!GO:0000245;spliceosome assembly;0.00044890960224329!GO:0007050;cell cycle arrest;0.000458564335920876!GO:0004576;oligosaccharyl transferase activity;0.000528569076469392!GO:0006613;cotranslational protein targeting to membrane;0.000569338733114693!GO:0008250;oligosaccharyl transferase complex;0.000572225447149174!GO:0006366;transcription from RNA polymerase II promoter;0.00061454743366383!GO:0065002;intracellular protein transport across a membrane;0.00061454743366383!GO:0006323;DNA packaging;0.000638521452747552!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00064622909452761!GO:0000151;ubiquitin ligase complex;0.000685455196633212!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000696878603153188!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.000705869918895845!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.000714984039772227!GO:0015002;heme-copper terminal oxidase activity;0.000714984039772227!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.000714984039772227!GO:0004129;cytochrome-c oxidase activity;0.000714984039772227!GO:0009165;nucleotide biosynthetic process;0.000734829706847955!GO:0046474;glycerophospholipid biosynthetic process;0.000737725621945607!GO:0065009;regulation of a molecular function;0.000756134101172545!GO:0019899;enzyme binding;0.000756134101172545!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000853624282360018!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.000862201585061892!GO:0005885;Arp2/3 protein complex;0.000888857082389828!GO:0046467;membrane lipid biosynthetic process;0.000894166304047692!GO:0019867;outer membrane;0.000989103121688263!GO:0006509;membrane protein ectodomain proteolysis;0.00108051623869138!GO:0033619;membrane protein proteolysis;0.00108051623869138!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00108814035267768!GO:0016044;membrane organization and biogenesis;0.00115863699489818!GO:0044255;cellular lipid metabolic process;0.00118586689279277!GO:0005524;ATP binding;0.00120840631641694!GO:0008026;ATP-dependent helicase activity;0.00121772519734836!GO:0007040;lysosome organization and biogenesis;0.00124011488720903!GO:0051920;peroxiredoxin activity;0.00128613777312625!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.00128775542679095!GO:0043566;structure-specific DNA binding;0.00133039482299061!GO:0007033;vacuole organization and biogenesis;0.00133039482299061!GO:0032559;adenyl ribonucleotide binding;0.00145269080503141!GO:0031968;organelle outer membrane;0.00153568532357985!GO:0006333;chromatin assembly or disassembly;0.00157874796488995!GO:0006334;nucleosome assembly;0.00159411560343814!GO:0030554;adenyl nucleotide binding;0.00159411560343814!GO:0048468;cell development;0.00167746469273075!GO:0005667;transcription factor complex;0.00168234788167209!GO:0043681;protein import into mitochondrion;0.0017102486523629!GO:0030145;manganese ion binding;0.00178148424538951!GO:0006695;cholesterol biosynthetic process;0.0018207220346427!GO:0006790;sulfur metabolic process;0.00190158981066633!GO:0016125;sterol metabolic process;0.00190242056669581!GO:0005774;vacuolar membrane;0.00198398634346407!GO:0005741;mitochondrial outer membrane;0.00202722150071857!GO:0007049;cell cycle;0.00204425953186313!GO:0016567;protein ubiquitination;0.00204425953186313!GO:0031324;negative regulation of cellular metabolic process;0.00215043126594157!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.00220702566164151!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.00220702566164151!GO:0018196;peptidyl-asparagine modification;0.00226321638923!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00226321638923!GO:0030132;clathrin coat of coated pit;0.00231539849377912!GO:0043284;biopolymer biosynthetic process;0.00247796880923643!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00259329099165014!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00260032900670119!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00262846227629369!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00262846227629369!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00262846227629369!GO:0030118;clathrin coat;0.00263245136703271!GO:0006807;nitrogen compound metabolic process;0.00265137850258637!GO:0016563;transcription activator activity;0.00265137850258637!GO:0030036;actin cytoskeleton organization and biogenesis;0.00273429895692817!GO:0043433;negative regulation of transcription factor activity;0.00280794978885784!GO:0032446;protein modification by small protein conjugation;0.00296948890319476!GO:0003746;translation elongation factor activity;0.00323682386050054!GO:0051101;regulation of DNA binding;0.00329918284364537!GO:0009892;negative regulation of metabolic process;0.00333395299967426!GO:0030663;COPI coated vesicle membrane;0.00334572505597409!GO:0030126;COPI vesicle coat;0.00334572505597409!GO:0015992;proton transport;0.00338920676907302!GO:0006793;phosphorus metabolic process;0.00348032586630119!GO:0006796;phosphate metabolic process;0.00348032586630119!GO:0006778;porphyrin metabolic process;0.00350881805961318!GO:0033013;tetrapyrrole metabolic process;0.00350881805961318!GO:0006612;protein targeting to membrane;0.00350948711793914!GO:0030027;lamellipodium;0.00369187927794964!GO:0030137;COPI-coated vesicle;0.00374723026144829!GO:0016860;intramolecular oxidoreductase activity;0.00381825288499888!GO:0006818;hydrogen transport;0.00392942037461538!GO:0016740;transferase activity;0.00398510236547066!GO:0044437;vacuolar part;0.0040911292858881!GO:0031301;integral to organelle membrane;0.00419830309548741!GO:0005769;early endosome;0.00419830309548741!GO:0006979;response to oxidative stress;0.00419830309548741!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00432097841241622!GO:0006626;protein targeting to mitochondrion;0.00434944582743089!GO:0031072;heat shock protein binding;0.00442634855884997!GO:0001726;ruffle;0.00458494641678817!GO:0043623;cellular protein complex assembly;0.00465741589221748!GO:0043021;ribonucleoprotein binding;0.00465741589221748!GO:0051098;regulation of binding;0.00465741589221748!GO:0005643;nuclear pore;0.00480241606226632!GO:0031497;chromatin assembly;0.00488694607863422!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.00496461938931531!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00501302187977521!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00501302187977521!GO:0031902;late endosome membrane;0.00523760268247813!GO:0005777;peroxisome;0.00528419748461111!GO:0042579;microbody;0.00528419748461111!GO:0006891;intra-Golgi vesicle-mediated transport;0.00548002312211747!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00553034665049858!GO:0046930;pore complex;0.00555349055545016!GO:0007006;mitochondrial membrane organization and biogenesis;0.00561831368479763!GO:0048471;perinuclear region of cytoplasm;0.00601469050315132!GO:0008092;cytoskeletal protein binding;0.00608471202640334!GO:0008632;apoptotic program;0.00629198785953103!GO:0046519;sphingoid metabolic process;0.00635015359214632!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.00636472290567852!GO:0009308;amine metabolic process;0.00653323120826606!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00673876561703276!GO:0006974;response to DNA damage stimulus;0.00684792578987242!GO:0030503;regulation of cell redox homeostasis;0.00700215829664937!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.00701972752459452!GO:0006839;mitochondrial transport;0.00721278488050106!GO:0006643;membrane lipid metabolic process;0.00721278488050106!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00748602468764539!GO:0045792;negative regulation of cell size;0.00767721348678292!GO:0006629;lipid metabolic process;0.00796376118402438!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00824240964385298!GO:0016310;phosphorylation;0.00824240964385298!GO:0008637;apoptotic mitochondrial changes;0.0082597115978485!GO:0043488;regulation of mRNA stability;0.00830226131284661!GO:0043487;regulation of RNA stability;0.00830226131284661!GO:0045936;negative regulation of phosphate metabolic process;0.00851099388556161!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00854536759513353!GO:0003713;transcription coactivator activity;0.00856510454979252!GO:0006749;glutathione metabolic process;0.00856923843659572!GO:0042168;heme metabolic process;0.00856923843659572!GO:0030308;negative regulation of cell growth;0.00875767637568832!GO:0030029;actin filament-based process;0.00884515145481056!GO:0050662;coenzyme binding;0.00925769538505477!GO:0017166;vinculin binding;0.0092851233797137!GO:0006779;porphyrin biosynthetic process;0.00952856433908394!GO:0033014;tetrapyrrole biosynthetic process;0.00952856433908394!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.00957933559340139!GO:0005765;lysosomal membrane;0.00970729743825014!GO:0051235;maintenance of localization;0.00996818442184009!GO:0006650;glycerophospholipid metabolic process;0.0102571065693888!GO:0005520;insulin-like growth factor binding;0.0105451669356331!GO:0001527;microfibril;0.0106676131639263!GO:0006354;RNA elongation;0.0109536772828478!GO:0000902;cell morphogenesis;0.0110779060440237!GO:0032989;cellular structure morphogenesis;0.0110779060440237!GO:0032507;maintenance of cellular protein localization;0.0111284526972536!GO:0051427;hormone receptor binding;0.0115091233137848!GO:0006022;aminoglycan metabolic process;0.0116738225704142!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0118247531852344!GO:0048522;positive regulation of cellular process;0.0120922595899002!GO:0008286;insulin receptor signaling pathway;0.0122685950039424!GO:0035035;histone acetyltransferase binding;0.0124648363549019!GO:0004386;helicase activity;0.0127033603990424!GO:0007243;protein kinase cascade;0.0131393978617063!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0132843184411832!GO:0003724;RNA helicase activity;0.0133349539914715!GO:0006672;ceramide metabolic process;0.0133349539914715!GO:0006740;NADPH regeneration;0.0137829983627806!GO:0006098;pentose-phosphate shunt;0.0137829983627806!GO:0030125;clathrin vesicle coat;0.0142045958493093!GO:0030665;clathrin coated vesicle membrane;0.0142045958493093!GO:0050811;GABA receptor binding;0.0144280969440055!GO:0000049;tRNA binding;0.0144280969440055!GO:0006520;amino acid metabolic process;0.0144459971321185!GO:0009719;response to endogenous stimulus;0.0144982991813235!GO:0046483;heterocycle metabolic process;0.0144982991813235!GO:0000096;sulfur amino acid metabolic process;0.0147663026794031!GO:0016568;chromatin modification;0.0149305578448963!GO:0006414;translational elongation;0.0156148717086996!GO:0006595;polyamine metabolic process;0.0164588310208933!GO:0046489;phosphoinositide biosynthetic process;0.0164958840899696!GO:0048487;beta-tubulin binding;0.0166686904540476!GO:0051287;NAD binding;0.0167354088888611!GO:0031418;L-ascorbic acid binding;0.0169350800778259!GO:0008203;cholesterol metabolic process;0.0169360449869672!GO:0031300;intrinsic to organelle membrane;0.0170361119985318!GO:0016408;C-acyltransferase activity;0.0172998021065722!GO:0000785;chromatin;0.0173393300258773!GO:0030658;transport vesicle membrane;0.0179878028784494!GO:0001836;release of cytochrome c from mitochondria;0.0183278808878718!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.018453722264459!GO:0045185;maintenance of protein localization;0.0184714812030947!GO:0051128;regulation of cellular component organization and biogenesis;0.0187041617340197!GO:0030203;glycosaminoglycan metabolic process;0.0188227314007963!GO:0051651;maintenance of cellular localization;0.0189488998853155!GO:0035257;nuclear hormone receptor binding;0.0196167389333575!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.0196460735034229!GO:0030119;AP-type membrane coat adaptor complex;0.0198295747732601!GO:0030984;kininogen binding;0.0200050023875031!GO:0004213;cathepsin B activity;0.0200050023875031!GO:0003729;mRNA binding;0.0201560489829032!GO:0016481;negative regulation of transcription;0.0205250057132211!GO:0022402;cell cycle process;0.0206249628654748!GO:0046822;regulation of nucleocytoplasmic transport;0.0212859308694508!GO:0042326;negative regulation of phosphorylation;0.0214892314775436!GO:0005581;collagen;0.0214923974800267!GO:0048037;cofactor binding;0.0216537649071637!GO:0005869;dynactin complex;0.0218635455805686!GO:0006066;alcohol metabolic process;0.0225722669161583!GO:0004216;cathepsin K activity;0.0225722669161583!GO:0051716;cellular response to stimulus;0.0228438554897149!GO:0006733;oxidoreduction coenzyme metabolic process;0.0229055471060579!GO:0033559;unsaturated fatty acid metabolic process;0.0233491623723897!GO:0006636;unsaturated fatty acid biosynthetic process;0.0233491623723897!GO:0006783;heme biosynthetic process;0.0234548742568934!GO:0008180;signalosome;0.0234548742568934!GO:0045926;negative regulation of growth;0.0243390279643888!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0248912284942757!GO:0042802;identical protein binding;0.0251632009148207!GO:0030660;Golgi-associated vesicle membrane;0.0252629286544226!GO:0016272;prefoldin complex;0.0266542072001655!GO:0050790;regulation of catalytic activity;0.0267589256895015!GO:0030659;cytoplasmic vesicle membrane;0.0269261203695465!GO:0051087;chaperone binding;0.0271438871326237!GO:0008139;nuclear localization sequence binding;0.0271989461794101!GO:0044420;extracellular matrix part;0.0274936566409873!GO:0003711;transcription elongation regulator activity;0.0275999132489641!GO:0007179;transforming growth factor beta receptor signaling pathway;0.0277241135259792!GO:0043022;ribosome binding;0.0284513338232964!GO:0008147;structural constituent of bone;0.0295201991062167!GO:0033673;negative regulation of kinase activity;0.029642423239244!GO:0006469;negative regulation of protein kinase activity;0.029642423239244!GO:0015631;tubulin binding;0.0300204929770226!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0304975915342056!GO:0030131;clathrin adaptor complex;0.0309965283188099!GO:0006897;endocytosis;0.0310143117491139!GO:0010324;membrane invagination;0.0310143117491139!GO:0000030;mannosyltransferase activity;0.0316069586400421!GO:0019318;hexose metabolic process;0.0327287896241708!GO:0005862;muscle thin filament tropomyosin;0.0334459463441234!GO:0031529;ruffle organization and biogenesis;0.0336985784977422!GO:0004177;aminopeptidase activity;0.0336985784977422!GO:0006497;protein amino acid lipidation;0.0338891569187354!GO:0051348;negative regulation of transferase activity;0.034911140955246!GO:0032981;mitochondrial respiratory chain complex I assembly;0.035048047778433!GO:0010257;NADH dehydrogenase complex assembly;0.035048047778433!GO:0033108;mitochondrial respiratory chain complex assembly;0.035048047778433!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0351532409120626!GO:0008652;amino acid biosynthetic process;0.0353337915643405!GO:0005996;monosaccharide metabolic process;0.0356196783424998!GO:0004192;cathepsin D activity;0.0357888750249236!GO:0006914;autophagy;0.0369433963882593!GO:0006402;mRNA catabolic process;0.0369433963882593!GO:0016197;endosome transport;0.0371399728411951!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0374201203353269!GO:0030149;sphingolipid catabolic process;0.0374490434141325!GO:0051276;chromosome organization and biogenesis;0.0390710692101313!GO:0030031;cell projection biogenesis;0.0400371748732485!GO:0051329;interphase of mitotic cell cycle;0.0404622978338449!GO:0001666;response to hypoxia;0.0404810247070521!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0410152307612111!GO:0042771;DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis;0.0414457532705022!GO:0031543;peptidyl-proline dioxygenase activity;0.0414457532705022!GO:0048500;signal recognition particle;0.0418335144163311!GO:0044438;microbody part;0.0421077332111076!GO:0044439;peroxisomal part;0.0421077332111076!GO:0006518;peptide metabolic process;0.0422166029185619!GO:0016051;carbohydrate biosynthetic process;0.0425569208276703!GO:0030199;collagen fibril organization;0.0425569208276703!GO:0030508;thiol-disulfide exchange intermediate activity;0.0426654439891475!GO:0003756;protein disulfide isomerase activity;0.0429017881618267!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0429017881618267!GO:0008154;actin polymerization and/or depolymerization;0.0430654815632232!GO:0008186;RNA-dependent ATPase activity;0.0433673038871045!GO:0004860;protein kinase inhibitor activity;0.0438129297259706!GO:0050178;phenylpyruvate tautomerase activity;0.0440712563789487!GO:0005832;chaperonin-containing T-complex;0.0447393954489645!GO:0006644;phospholipid metabolic process;0.0447837494715708!GO:0015036;disulfide oxidoreductase activity;0.0450338854650806!GO:0004228;gelatinase A activity;0.0450338854650806!GO:0001955;blood vessel maturation;0.0450338854650806!GO:0006739;NADP metabolic process;0.0450438555227592!GO:0051168;nuclear export;0.0452837322894011!GO:0043071;positive regulation of non-apoptotic programmed cell death;0.046030459965978!GO:0008320;protein transmembrane transporter activity;0.0467669999214048!GO:0006767;water-soluble vitamin metabolic process;0.0480548576469962!GO:0000209;protein polyubiquitination;0.048595711033611 | |||
|sample_id=11353 | |||
|sample_note= | |||
|sample_sex=male | |||
|sample_species=Human (Homo sapiens) | |||
|sample_strain= | |||
|sample_tissue=bone | |||
|top_motifs=HMX1:2.43070393594;HES1:2.33984793782;ESR1:2.24930805124;EBF1:2.21618058476;TFAP4:1.80261387097;IKZF1:1.7552770145;ZNF423:1.71622591384;ZNF238:1.62390767104;bHLH_family:1.60814480064;TAL1_TCF{3,4,12}:1.58783250067;GLI1..3:1.53978025972;MAFB:1.4018876556;NFE2L1:1.38423428978;PAX1,9:1.27731631716;HOX{A5,B5}:1.17502028672;RXRA_VDR{dimer}:1.13750542782;UFEwm:1.10116956282;ESRRA:1.08371594449;NR5A1,2:1.05382749305;TP53:1.03786982715;GCM1,2:1.03763206354;SMAD1..7,9:1.00822898858;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.982174949912;ZBTB6:0.953856538595;ZIC1..3:0.854001024498;TFAP2{A,C}:0.822368410104;LHX3,4:0.820234452066;ATF6:0.794927379196;HOX{A6,A7,B6,B7}:0.761770099244;GTF2A1,2:0.724955846935;MTF1:0.700629198044;PPARG:0.685076442215;TFAP2B:0.666461796881;TEAD1:0.643722393575;GZF1:0.640888570825;SREBF1,2:0.61340982823;ZNF148:0.604908546628;ALX4:0.594890281084;TFCP2:0.587933548012;NANOG{mouse}:0.517424104279;RREB1:0.504577484825;NR6A1:0.503919229128;GFI1B:0.502203180359;ARID5B:0.494468799554;TLX1..3_NFIC{dimer}:0.477499468754;PAX5:0.451714519776;REST:0.40096154599;SPZ1:0.396431831346;MYFfamily:0.386348698095;NHLH1,2:0.358050387329;EVI1:0.32840468407;NFIX:0.322543786684;NR3C1:0.316203291864;SRF:0.315099854008;GTF2I:0.271994768869;XBP1:0.267862712802;HLF:0.267008869731;FOXL1:0.253734431244;HIC1:0.2393430271;NKX2-2,8:0.229489443728;KLF4:0.211298224085;HNF4A_NR2F1,2:0.19336266789;HAND1,2:0.185188616918;NR1H4:0.174868582019;STAT2,4,6:0.166497779124;NFE2L2:0.150852281169;TBX4,5:0.140735322087;NFATC1..3:0.127354063033;NFIL3:0.110073334389;MYB:0.089304270153;HNF1A:0.0786062914854;PATZ1:0.0648142349428;MED-1{core}:0.0508141243057;ONECUT1,2:0.0469606910612;MYOD1:0.024465736548;RXR{A,B,G}:0.0101988053889;RUNX1..3:-0.0137124891712;CEBPA,B_DDIT3:-0.0472541752058;LEF1_TCF7_TCF7L1,2:-0.0758662820105;YY1:-0.0778401168923;FOX{D1,D2}:-0.0939009651369;TBP:-0.123746388937;XCPE1{core}:-0.128316832392;ZEB1:-0.137469217408;MAZ:-0.157007353229;JUN:-0.165858626735;RFX1:-0.174422689732;MTE{core}:-0.178416091117;BACH2:-0.183323662422;SNAI1..3:-0.18915718727;FOS_FOS{B,L1}_JUN{B,D}:-0.199805315943;MZF1:-0.204343079431;FOXO1,3,4:-0.219708171512;PRRX1,2:-0.222664238694;FOSL2:-0.242168472279;EN1,2:-0.250350071427;STAT5{A,B}:-0.267631916882;TLX2:-0.287965608227;POU6F1:-0.310141095746;AIRE:-0.320965227629;NFKB1_REL_RELA:-0.327154866438;FOXA2:-0.346975043543;PRDM1:-0.364419462193;CDC5L:-0.373353328533;MEF2{A,B,C,D}:-0.375381770598;ATF4:-0.444892823996;GATA4:-0.445900393898;NKX2-3_NKX2-5:-0.461460942108;SOX17:-0.469458350204;GATA6:-0.47951440731;FOXM1:-0.479598948433;LMO2:-0.480963043446;DBP:-0.484927619313;PBX1:-0.486365993922;ADNP_IRX_SIX_ZHX:-0.49782351508;NKX3-2:-0.529718575669;MYBL2:-0.532366351993;PAX6:-0.542920037641;TOPORS:-0.570841927679;HOX{A4,D4}:-0.577029932865;SPIB:-0.594125969949;SP1:-0.611714957176;FOX{F1,F2,J1}:-0.612542746606;BPTF:-0.626487302653;RFX2..5_RFXANK_RFXAP:-0.647867475089;ETS1,2:-0.650025572286;HMGA1,2:-0.663885666753;TGIF1:-0.667994327657;GFI1:-0.668775196545;FOXQ1:-0.673152861321;EGR1..3:-0.676160455759;PAX4:-0.707369990354;IRF1,2:-0.711780190788;EP300:-0.72280099016;ZNF143:-0.744323555635;ZFP161:-0.752375771951;NFE2:-0.763821803246;CRX:-0.765594058276;FOXP3:-0.775209033346;POU3F1..4:-0.793903485142;NKX3-1:-0.794196395076;SPI1:-0.806777324839;DMAP1_NCOR{1,2}_SMARC:-0.8070752884;CDX1,2,4:-0.813005796545;FOX{I1,J2}:-0.815459219808;RORA:-0.829553276121;PAX3,7:-0.871448592484;T:-0.887428021299;POU2F1..3:-0.891198658668;ZNF384:-0.898484314132;PAX8:-0.91791106089;NANOG:-0.929080059287;IRF7:-0.931931562069;SOX5:-0.937903645561;SOX{8,9,10}:-0.976062885127;TFDP1:-1.01262676446;NKX6-1,2:-1.01746215576;HIF1A:-1.04406745767;CUX2:-1.04644672148;HOXA9_MEIS1:-1.05301923481;ELK1,4_GABP{A,B1}:-1.06401364163;AR:-1.06751817571;PITX1..3:-1.07088366997;ATF2:-1.07094157878;TEF:-1.08931985442;HSF1,2:-1.09333772353;RBPJ:-1.1588025527;OCT4_SOX2{dimer}:-1.17105129142;STAT1,3:-1.18310003923;SOX2:-1.20657893006;HBP1_HMGB_SSRP1_UBTF:-1.21222726696;NRF1:-1.21920259056;ATF5_CREB3:-1.26176820691;PAX2:-1.27568047974;CREB1:-1.28166500594;BREu{core}:-1.34098819947;NKX2-1,4:-1.36744176189;E2F1..5:-1.45296017525;ZBTB16:-1.46660013899;AHR_ARNT_ARNT2:-1.48041568125;VSX1,2:-1.50143583503;PDX1:-1.50893190087;NFY{A,B,C}:-1.54132825763;ALX1:-1.6017748677;FOXP1:-1.64637924525;POU5F1:-1.64828600646;ELF1,2,4:-1.65772190666;FOXN1:-1.70755989577;IKZF2:-1.80419820594;RXR{A,B,G}_{NR1H2,PPAR}dimers:-2.37923802558;POU1F1:-2.40463642062;FOXD3:-2.5066863879 | |||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11353-117H3;search_select_hide=table117:FF:11353-117H3 | |||
}} | }} |
Latest revision as of 17:54, 4 June 2020
Name: | Osteoblast - differentiated, donor2 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs11980 |
Sample type: | primary cells |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11980
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11980
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.666 |
10 | 10 | 0.871 |
100 | 100 | 0.917 |
101 | 101 | 0.908 |
102 | 102 | 0.722 |
103 | 103 | 0.226 |
104 | 104 | 0.138 |
105 | 105 | 0.576 |
106 | 106 | 0.0298 |
107 | 107 | 0.0368 |
108 | 108 | 0.229 |
109 | 109 | 0.0851 |
11 | 11 | 0.0375 |
110 | 110 | 0.287 |
111 | 111 | 0.595 |
112 | 112 | 0.402 |
113 | 113 | 0.267 |
114 | 114 | 0.207 |
115 | 115 | 0.0161 |
116 | 116 | 0.105 |
117 | 117 | 0.729 |
118 | 118 | 0.821 |
119 | 119 | 0.194 |
12 | 12 | 0.632 |
120 | 120 | 0.217 |
121 | 121 | 0.543 |
122 | 122 | 0.479 |
123 | 123 | 0.363 |
124 | 124 | 0.91 |
125 | 125 | 0.945 |
126 | 126 | 0.81 |
127 | 127 | 0.21 |
128 | 128 | 0.0348 |
129 | 129 | 0.683 |
13 | 13 | 0.791 |
130 | 130 | 0.576 |
131 | 131 | 0.856 |
132 | 132 | 0.396 |
133 | 133 | 0.963 |
134 | 134 | 0.169 |
135 | 135 | 0.175 |
136 | 136 | 0.761 |
137 | 137 | 0.418 |
138 | 138 | 0.957 |
139 | 139 | 0.0997 |
14 | 14 | 0.845 |
140 | 140 | 0.158 |
141 | 141 | 0.527 |
142 | 142 | 0.0536 |
143 | 143 | 0.0754 |
144 | 144 | 0.78 |
145 | 145 | 0.186 |
146 | 146 | 0.239 |
147 | 147 | 0.46 |
148 | 148 | 0.442 |
149 | 149 | 0.00917 |
15 | 15 | 0.204 |
150 | 150 | 0.345 |
151 | 151 | 0.296 |
152 | 152 | 0.0679 |
153 | 153 | 0.87 |
154 | 154 | 0.59 |
155 | 155 | 0.425 |
156 | 156 | 0.728 |
157 | 157 | 0.171 |
158 | 158 | 0.189 |
159 | 159 | 0.654 |
16 | 16 | 0.0703 |
160 | 160 | 0.133 |
161 | 161 | 0.568 |
162 | 162 | 0.0443 |
163 | 163 | 0.0877 |
164 | 164 | 0.448 |
165 | 165 | 0.611 |
166 | 166 | 0.121 |
167 | 167 | 0.606 |
168 | 168 | 0.718 |
169 | 169 | 0.0367 |
17 | 17 | 0.178 |
18 | 18 | 0.0392 |
19 | 19 | 0.06 |
2 | 2 | 0.289 |
20 | 20 | 0.509 |
21 | 21 | 0.764 |
22 | 22 | 0.0891 |
23 | 23 | 0.187 |
24 | 24 | 0.792 |
25 | 25 | 0.573 |
26 | 26 | 0.299 |
27 | 27 | 0.205 |
28 | 28 | 0.613 |
29 | 29 | 0.415 |
3 | 3 | 0.341 |
30 | 30 | 0.425 |
31 | 31 | 0.367 |
32 | 32 | 1.75673e-7 |
33 | 33 | 0.757 |
34 | 34 | 0.535 |
35 | 35 | 0.333 |
36 | 36 | 0.858 |
37 | 37 | 0.145 |
38 | 38 | 0.409 |
39 | 39 | 0.257 |
4 | 4 | 0.703 |
40 | 40 | 0.286 |
41 | 41 | 0.926 |
42 | 42 | 0.781 |
43 | 43 | 0.16 |
44 | 44 | 0.213 |
45 | 45 | 0.256 |
46 | 46 | 0.13 |
47 | 47 | 0.323 |
48 | 48 | 0.188 |
49 | 49 | 0.17 |
5 | 5 | 0.61 |
50 | 50 | 0.519 |
51 | 51 | 0.266 |
52 | 52 | 0.323 |
53 | 53 | 0.771 |
54 | 54 | 0.326 |
55 | 55 | 0.0662 |
56 | 56 | 0.372 |
57 | 57 | 0.393 |
58 | 58 | 0.966 |
59 | 59 | 0.013 |
6 | 6 | 0.956 |
60 | 60 | 0.392 |
61 | 61 | 0.603 |
62 | 62 | 0.759 |
63 | 63 | 0.0748 |
64 | 64 | 0.153 |
65 | 65 | 0.0684 |
66 | 66 | 0.709 |
67 | 67 | 0.363 |
68 | 68 | 0.329 |
69 | 69 | 0.0811 |
7 | 7 | 0.853 |
70 | 70 | 0.0301 |
71 | 71 | 0.43 |
72 | 72 | 0.559 |
73 | 73 | 0.0438 |
74 | 74 | 0.729 |
75 | 75 | 0.377 |
76 | 76 | 0.753 |
77 | 77 | 0.0131 |
78 | 78 | 0.52 |
79 | 79 | 0.00129 |
8 | 8 | 0.0488 |
80 | 80 | 0.926 |
81 | 81 | 0.213 |
82 | 82 | 0.123 |
83 | 83 | 0.551 |
84 | 84 | 0.224 |
85 | 85 | 0.0785 |
86 | 86 | 0.444 |
87 | 87 | 0.226 |
88 | 88 | 0.601 |
89 | 89 | 0.0229 |
9 | 9 | 0.438 |
90 | 90 | 0.354 |
91 | 91 | 0.357 |
92 | 92 | 0.104 |
93 | 93 | 0.54 |
94 | 94 | 0.527 |
95 | 95 | 0.452 |
96 | 96 | 0.494 |
97 | 97 | 0.248 |
98 | 98 | 0.0631 |
99 | 99 | 0.021 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11980
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000127 human osteoblast-Sciencell sample
FF:0000128 human osteoblast-Cell applications sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000055 (non-terminally differentiated cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000062 (osteoblast)
UBERON: Anatomy
0002384 (connective tissue)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000127 (human osteoblast-Sciencell sample)
0000128 (human osteoblast-Cell applications sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
CL:0000335 (mesenchyme condensation cell)