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{{f5samples
{{f5samples
|id=FF:12652-134H6
|DRA_sample_Accession=CAGE@SAMD00005824
|name=Aortic smooth muscle cell response to IL1b, 00hr00min, biol_rep1 (LK31)
|accession_numbers=CAGE;DRX008581;DRR009453;DRZ000878;DRZ002263;DRZ012228;DRZ013613
|sample_id=12652
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001135,UBERON:0000947,UBERON:0001637,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0004573,UBERON:0002385,UBERON:0003509,UBERON:0007500,UBERON:0001981,UBERON:0004237,UBERON:0004695,UBERON:0002049,UBERON:0010317,UBERON:0002111,UBERON:0007798,UBERON:0001015,UBERON:0004178,UBERON:0002204,UBERON:0004535,UBERON:0004571,UBERON:0010191,UBERON:0000383,UBERON:0004572,UBERON:0004537,UBERON:0001009
|rna_tube_id=134H6
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0000359,CL:0002539
|rna_box=134
|rna_position=H6
|sample_cell_lot=
|sample_cell_catalog=
|sample_company=
|rna_lot_number=
|rna_catalog_number=
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=
|sample_tissue=aorta
|sample_donor(cell lot)=rep1
|sample_sex=
|sample_age=
|sample_ethnicity=
|rna_rin=
|rna_od260/230=
|rna_od260/280=2.090010977
|sample_cell_type=smooth muscle cell, vascular associated
|sample_cell_line=
|sample_collaboration=Levon Khachigian (University of New South Wales)
|sample_experimental_condition=Aortic smooth muscle cell response to interleukin 1b
|sample_disease=
|rna_sample_type=
|rna_extraction_protocol=
|rna_weight_ug=4.57
|rna_concentration=0.15
|sample_note=
|profile_hcage=CNhs13349,LSID1022,release013,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000048,CL:0000055,CL:0000056,CL:0000144,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000220,CL:0000222,CL:0000255,CL:0000355,CL:0000359,CL:0000393,CL:0000514,CL:0000548,CL:0000680,CL:0000723,CL:0002321,CL:0002371,CL:0002539
|ancestors_in_anatomy_facet=UBERON:0000025,UBERON:0000055,UBERON:0000061,UBERON:0000119,UBERON:0000383,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000477,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000483,UBERON:0000486,UBERON:0000490,UBERON:0000914,UBERON:0000922,UBERON:0000923,UBERON:0000926,UBERON:0000947,UBERON:0001009,UBERON:0001015,UBERON:0001062,UBERON:0001134,UBERON:0001135,UBERON:0001637,UBERON:0001981,UBERON:0002036,UBERON:0002049,UBERON:0002050,UBERON:0002111,UBERON:0002204,UBERON:0002329,UBERON:0002385,UBERON:0002532,UBERON:0003059,UBERON:0003077,UBERON:0003081,UBERON:0003082,UBERON:0003104,UBERON:0003509,UBERON:0003914,UBERON:0004111,UBERON:0004120,UBERON:0004178,UBERON:0004237,UBERON:0004290,UBERON:0004535,UBERON:0004537,UBERON:0004571,UBERON:0004572,UBERON:0004573,UBERON:0004695,UBERON:0004872,UBERON:0005291,UBERON:0005423,UBERON:0006965,UBERON:0007500,UBERON:0007798,UBERON:0009142
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000210,FF:0000101,FF:0000001,FF:0000350,FF:0000344,FF:0000340,FF:0000556
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|donor=biol_rep1 (LK31)
|expression_enrichment_score=chr8:55370487..55370503,+!p1@SOX17!1.98!94.94!SOX17;;chr21:38071430..38071456,+!p1@SIM2!1.75!54.77!SIM2;;chr1:170633348..170633399,+!p2@PRRX1!1.53!44.55!PRRX1;;chr12:66218836..66218888,+!p1@HMGA2!1.40!216.90!HMGA2;;chr14:29235961..29236008,+!p1@FOXG1!1.39!23.37!FOXG1;;chr14:29236269..29236285,+!p3@FOXG1!1.37!22.64!FOXG1;;chr1:170632285..170632309,+!p1@PRRX1!1.34!23.37!PRRX1;;chr14:29234581..29234601,+!p2@FOXG1!1.33!20.45!FOXG1;;chr12:66218598..66218645,+!p2@HMGA2!1.24!75.22!HMGA2;;chr17:1959369..1959388,+!p2@HIC1!1.24!43.09!HIC1;;chr1:170633262..170633285,+!p3@PRRX1!1.21!17.53!PRRX1;;chr8:11561684..11561751,+!p1@GATA4!1.19!14.61!GATA4;;chr12:66218923..66218934,+!p14@HMGA2!1.17!13.88!HMGA2;;chr11:34642612..34642646,+!p1@EHF!1.10!11.68!EHF;;chr11:46299199..46299233,+!p1@CREB3L1!1.08!57.69!CREB3L1;;chr12:66218904..66218913,+!p11@HMGA2!1.08!10.95!HMGA2;;chr1:170632250..170632277,+!p7@PRRX1!1.08!10.95!PRRX1;;chr10:94449703..94449718,+!p1@HHEX!1.07!41.63!HHEX;;chr3:141087393..141087426,+!p3@ZBTB38!1.05!41.63!ZBTB38;;chr12:66218255..66218304,+!p3@HMGA2!0.99!24.10!HMGA2;;chr6:45296048..45296082,+!p1@RUNX2!0.99!10.22!RUNX2;;chr2:19558373..19558392,-!p1@OSR1!0.98!24.10!OSR1;;chr1:170632959..170632987,+!p4@PRRX1!0.98!9.49!PRRX1;;chr5:72744594..72744609,-!p1@FOXD1!0.96!37.98!FOXD1;;chr17:46621937..46621966,-!p2@HOXB2!0.96!22.64!HOXB2;;chr15:83953397..83953425,-!p1@BNC1!0.96!9.49!BNC1;;chr17:46622205..46622218,-!p3@HOXB2!0.96!9.49!HOXB2;;chr8:55370720..55370733,+!p2@SOX17!0.96!8.03!SOX17;;chr11:61520075..61520136,+!p1@C11orf9!0.92!16.07!C11orf9;;chr1:170632723..170632739,+!p8@PRRX1!0.92!7.30!PRRX1;;chr11:46299539..46299620,+!p2@CREB3L1!0.91!12.42!CREB3L1;;chr3:141105705..141105770,+!p4@ZBTB38!0.91!8.76!ZBTB38;;chr19:42636586..42636607,-!p1@POU2F2!0.90!19.72!POU2F2;;chr16:86544113..86544145,+!p1@FOXF1!0.90!8.76!FOXF1;;chr1:151032860..151032918,+!p1@MLLT11!0.89!84.72!MLLT11;;chr17:46622070..46622109,-!p1@HOXB2!0.88!15.34!HOXB2;;chr7:35293685..35293718,-!p1@TBX20!0.88!6.57!TBX20;;chr1:170632115..170632136,+!p9@PRRX1!0.88!6.57!PRRX1;;chr21:38071403..38071428,+!p2@SIM2!0.88!6.57!SIM2;;chr15:96876966..96877017,+!p12@NR2F2!0.87!9.49!NR2F2;;chr2:239756739..239756755,+!p2@TWIST2!0.86!10.95!TWIST2;;chr3:157823517..157823562,-!p1@SHOX2!0.85!6.57!SHOX2;;chr17:46688334..46688385,-!p1@HOXB7!0.84!8.76!HOXB7;;chr12:66218212..66218244,+!p5@HMGA2!0.84!8.76!HMGA2;;chr17:46675558..46675577,-!p2@HOXB6!0.84!5.84!HOXB6;;chr2:102091144..102091183,-!p2@RFX8!0.84!5.84!RFX8;;chr1:170633058..170633084,+!p5@PRRX1!0.84!5.84!PRRX1;;chr15:96869255..96869291,+!p6@NR2F2!0.83!10.95!NR2F2;;chr1:151032922..151032951,+!p2@MLLT11!0.81!9.49!MLLT11;;chr2:239756671..239756732,+!p1@TWIST2!0.80!18.26!TWIST2;;chr11:65686802..65686818,+!p6@DRAP1!0.79!9.49!DRAP1;;chr17:46622440..46622477,-!p5@HOXB2!0.79!5.84!HOXB2;;chr21:38071462..38071474,+!p3@SIM2!0.79!5.11!SIM2;;chr5:139492456..139492489,+!p7@PURA!0.79!5.11!PURA;;chr6:134210243..134210257,+!p1@TCF21!0.79!5.11!TCF21;;chr1:37940170..37940190,+!p1@ZC3H12A!0.75!63.54!ZC3H12A;;chr17:41622765..41622821,-!p2@ETV4!0.75!7.30!ETV4;;chr11:65687362..65687436,+!p3@DRAP1!0.74!22.64!DRAP1;;chr20:42543441..42543497,+!p1@TOX2!0.73!21.91!TOX2;;chr1:170632051..170632081,+!p16@PRRX1!0.73!4.38!PRRX1;;chr11:46333934..46333963,+!p5@CREB3L1!0.73!4.38!CREB3L1;;chr12:66357214..66357233,+!p13@HMGA2!0.73!4.38!HMGA2;;chr12:66358080..66358094,+!p15@HMGA2!0.73!4.38!HMGA2;;chr17:46655672..46655697,-!p3@HOXB4!0.73!4.38!HOXB4;;chr7:27169801..27169844,-!p2@HOXA4!0.73!4.38!HOXA4;;chr7:27183263..27183284,-!p2@HOXA5!0.73!4.38!HOXA5;;chrY:21906594..21906622,-!p1@KDM5D!0.73!4.38!KDM5D;;chr17:3571863..3571881,-!p1@TAX1BP3!0.72!343.98!TAX1BP3;;chr11:128563948..128564003,+!p1@FLI1!0.72!57.69!FLI1;;chr5:72743793..72743855,-!p4@FOXD1!0.72!5.11!FOXD1;;chr6:43140149..43140177,+!p8@SRF!0.70!4.38!SRF;;chr17:1958388..1958404,+!p1@HIC1!0.69!28.48!HIC1;;chr12:66218183..66218209,+!p4@HMGA2!0.69!8.03!HMGA2;;chr1:221052776..221052799,+!p1@HLX!0.68!7.30!HLX;;chr17:41623009..41623053,-!p4@ETV4!0.68!6.57!ETV4;;chr8:72756267..72756296,-!p4@MSC!0.68!5.84!MSC;;chr8:72756213..72756243,-!p5@MSC!0.68!5.11!MSC;;chr5:72744445..72744466,-!p2@FOXD1!0.67!6.57!FOXD1;;chr6:21597600..21597664,+!p3@SOX4!0.67!6.57!SOX4;;chr12:66218573..66218596,+!p7@HMGA2!0.67!5.84!HMGA2;;chr11:46299443..46299459,+!p4@CREB3L1!0.67!3.65!CREB3L1;;chr7:27153454..27153469,-!p2@HOXA3!0.67!3.65!HOXA3;;chr7:27183291..27183324,-!p1@HOXA5!0.67!3.65!HOXA5;;chr16:30406423..30406447,+!p4@ZNF48!0.67!3.65!ZNF48;;chr16:31076332..31076388,-!p3@ZNF668!0.67!3.65!ZNF668;;chr17:46655578..46655589,-!p4@HOXB4!0.67!3.65!HOXB4;;chr17:46659728..46659749,-!p3@HOXB3!0.67!3.65!HOXB3;;chr19:9609272..9609297,-!p1@ZNF560!0.67!3.65!ZNF560;;chr1:170632477..170632506,+!p6@PRRX1!0.67!3.65!PRRX1;;chr1:170632907..170632916,+!p22@PRRX1!0.67!3.65!PRRX1;;chr1:170633245..170633256,+!p14@PRRX1!0.67!3.65!PRRX1;;chr21:38071488..38071502,+!p4@SIM2!0.67!3.65!SIM2;;chr7:26191809..26191890,+!p1@NFE2L3!0.66!20.45!NFE2L3;;chr2:66662281..66662308,+!p1@MEIS1!0.66!13.88!MEIS1;;chr15:96869222..96869251,+!p18@NR2F2!0.66!4.38!NR2F2;;chr6:34204921..34204939,+!p3@HMGA1!0.65!122.69!HMGA1;;chr14:62162258..62162269,+!p2@HIF1A!0.65!38.71!HIF1A;;chr1:221053049..221053075,+!p3@HLX!0.65!6.57!HLX;;chr20:50721803..50721857,-!p2@ZFP64!0.65!5.84!ZFP64;;chr19:13134457..13134462,+!p5@NFIX!0.64!6.57!NFIX;;chr5:72744562..72744573,-!p3@FOXD1!0.64!4.38!FOXD1;;chr11:65686732..65686756,+!p2@DRAP1!0.63!16.07!DRAP1;;chr12:125002739..125002756,-!p6@NCOR2!0.63!5.11!NCOR2;;chr5:321810..321877,+!p1@AHRR!0.62!11.68!AHRR;;chr18:53068911..53068935,-!p4@TCF4!0.62!3.65!TCF4;;chr6:34205372..34205412,+!p5@HMGA1!0.61!18.26!HMGA1;;chr17:46675420..46675465,-!p3@HOXB6!0.61!3.65!HOXB6;;chr9:35732647..35732678,+!p2@CREB3!0.60!19.72!CREB3;;chr4:4861385..4861398,+!p1@MSX1!0.60!10.22!MSX1;;chr3:52001396..52001425,-!p4@PCBP4!0.60!5.84!PCBP4;;chr1:221052840..221052875,+!p4@HLX!0.60!3.65!HLX;;chr17:46622229..46622257,-!p6@HOXB2!0.60!3.65!HOXB2;;chr20:42543506..42543549,+!p2@TOX2!0.59!8.03!TOX2;;chr8:72756063..72756125,-!p1@MSC!0.59!6.57!MSC;;chr7:27142290..27142310,-!p1@HOXA2!0.59!2.92!HOXA2;;chr8:55370693..55370704,+!p4@SOX17!0.59!2.92!SOX17;;chr1:170632028..170632043,+!p20@PRRX1!0.59!2.92!PRRX1;;chr1:170632137..170632172,+!p10@PRRX1!0.59!2.92!PRRX1;;chr1:170632439..170632465,+!p11@PRRX1!0.59!2.92!PRRX1;;chr1:170633194..170633205,+!p18@PRRX1!0.59!2.92!PRRX1;;chr10:131762504..131762555,-!p1@EBF3!0.59!2.92!EBF3;;chr14:29236169..29236216,+!p6@FOXG1!0.59!2.92!FOXG1;;chr2:102091566..102091581,-!p1@RFX8!0.59!2.92!RFX8;;chr2:66662510..66662521,+!p6@MEIS1!0.59!2.92!MEIS1;;chr16:86612320..86612394,+!p1@FOXL1!0.59!2.92!FOXL1;;chr17:41622731..41622764,-!p5@ETV4!0.59!2.92!ETV4;;chr17:46621146..46621180,-!p10@HOXB2!0.59!2.92!HOXB2;;chr17:46675586..46675600,-!p6@HOXB6!0.59!2.92!HOXB6;;chrY:2803415..2803468,+!p1@ZFY!0.59!2.92!ZFY;;chr9:16705069..16705086,-!p3@BNC2!0.59!2.92!BNC2;;chr7:44143925..44143970,+!p1@AEBP1!0.58!77.41!AEBP1;;chr5:34929947..34930005,+!p3@DNAJC21!0.58!9.49!DNAJC21;;chr10:94449675..94449694,+!p2@HHEX!0.58!8.76!HHEX;;chr17:46655730..46655791,-!p1@HOXB4!0.58!8.03!HOXB4;;chr3:168864315..168864339,-!p2@MECOM!0.58!5.11!MECOM;;chr2:66662895..66662907,+!p3@MEIS1!0.58!3.65!MEIS1;;chr6:43140095..43140145,+!p5@SRF!0.58!3.65!SRF;;chr8:49833948..49833973,-!p2@SNAI2!0.57!21.18!SNAI2;;chr15:57511609..57511651,+!p2@TCF12!0.57!5.11!TCF12;;chr17:41622925..41622976,-!p3@ETV4!0.57!4.38!ETV4;;chr17:3571887..3571918,-!p2@TAX1BP3!0.56!36.52!TAX1BP3;;chr1:158979792..158979814,+!p2@IFI16!0.56!31.40!IFI16;;chr6:21597765..21597779,+!p2@SOX4!0.56!26.29!SOX4;;chrX:66763815..66763854,+!p2@AR!0.56!3.65!AR;;chr17:41623692..41623715,-!p1@ETV4!0.55!13.15!ETV4;;chr12:66218378..66218401,+!p6@HMGA2!0.55!4.38!HMGA2;;chr2:46612334..46612349,+!p6@EPAS1!0.55!3.65!EPAS1;;chr4:81118647..81118666,+!p1@PRDM8!0.55!3.65!PRDM8;;chr11:46299186..46299195,+!p3@CREB3L1!0.55!2.92!CREB3L1;;chr3:52001448..52001478,-!p2@PCBP4!0.54!43.82!PCBP4;;chr6:21597370..21597408,+!p5@SOX4!0.54!4.38!SOX4;;chr5:43067636..43067674,+!p6@ZNF131!0.54!3.65!ZNF131;;chr17:46687959..46688007,-!p2@HOXB7!0.54!3.65!HOXB7;;chr10:63809013..63809041,+!p3@ARID5B!0.53!16.80!ARID5B;;chr7:19157248..19157268,-!p1@TWIST1!0.53!8.03!TWIST1;;chr6:1312325..1312340,+!p1@FOXQ1!0.53!4.38!FOXQ1;;chr10:63809106..63809127,+!p1@ARID5B!0.52!40.17!ARID5B;;chr11:65687158..65687216,+!p4@DRAP1!0.52!16.80!DRAP1;;chr2:66662249..66662267,+!p2@MEIS1!0.52!10.95!MEIS1;;chr19:52839515..52839572,+!p1@ZNF610!0.52!5.84!ZNF610;;chr15:96869292..96869320,+!p15@NR2F2!0.52!3.65!NR2F2;;chrX:66763856..66763896,+!p1@AR!0.52!3.65!AR;;chr8:145159846..145159889,+!p6@MAF1!0.52!3.65!MAF1;;chr17:41622834..41622883,-!p6@ETV4!0.52!2.92!ETV4;;chr2:46602879..46602899,+!p8@EPAS1!0.52!2.92!EPAS1;;chr10:63853436..63853442,+!p4@ARID5B!0.51!15.34!ARID5B;;chr16:86600426..86600441,+!p1@FOXC2!0.51!6.57!FOXC2;;chr10:94449649..94449664,+!p3@HHEX!0.51!3.65!HHEX;;chr4:146402966..146402985,+!p2@SMAD1!0.50!10.22!SMAD1;;chr14:73360799..73360817,-!p1@DPF3!0.50!9.49!DPF3;;chr14:35872962..35873025,-!p3@NFKBIA!0.50!6.57!NFKBIA;;chr7:19157043..19157088,-!p2@TWIST1!0.50!6.57!TWIST1;;chr19:56152332..56152347,+!p4@ZNF580!0.50!5.84!ZNF580;;chr1:151032833..151032850,+!p3@MLLT11!0.50!5.84!MLLT11;;chr19:19303047..19303079,+!p3@RFXANK!0.50!5.84!RFXANK;;chr1:151032782..151032801,+!p4@MLLT11!0.50!5.11!MLLT11;;chr1:158985493..158985535,+!p4@IFI16!0.50!3.65!IFI16;;chr17:46655704..46655718,-!p2@HOXB4!0.50!3.65!HOXB4;;chr12:80083544..80083558,-!p13@PAWR!0.50!2.92!PAWR;;chr1:151032739..151032748,+!p6@MLLT11!0.50!2.92!MLLT11;;chr19:45254481..45254495,+!p13@BCL3!0.50!2.19!BCL3;;chr1:170632310..170632321,+!p15@PRRX1!0.50!2.19!PRRX1;;chr1:170632583..170632590,+!p26@PRRX1!0.50!2.19!PRRX1;;chr1:170632647..170632659,+!p17@PRRX1!0.50!2.19!PRRX1;;chr1:170632683..170632696,+!p12@PRRX1!0.50!2.19!PRRX1;;chr1:170633021..170633028,+!p27@PRRX1!0.50!2.19!PRRX1;;chr1:43162358..43162369,+!p11@YBX1!0.50!2.19!YBX1;;chr15:96869165..96869183,+!p20@NR2F2!0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|ffid_belonging_in_development=CL:0000355,CL:0000222,CL:0000514
|fonse_cell_line=
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|fonse_cell_line_closure=
Line 66: Line 42:
|fonse_treatment=EFO:0000369,FF:0000340,FF:0000556,FF:12652-134H6
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|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/Aortic%2520smooth%2520muscle%2520cell%2520response%2520to%2520IL1b%252c%252000hr00min%252c%2520biol_rep1%2520%2528LK31%2529.CNhs13349.12652-134H6.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/Aortic%2520smooth%2520muscle%2520cell%2520response%2520to%2520IL1b%252c%252000hr00min%252c%2520biol_rep1%2520%2528LK31%2529.CNhs13349.12652-134H6.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.timecourse.hCAGE/Aortic%2520smooth%2520muscle%2520cell%2520response%2520to%2520IL1b%252c%252000hr00min%252c%2520biol_rep1%2520%2528LK31%2529.CNhs13349.12652-134H6.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.timecourse.hCAGE/Aortic%2520smooth%2520muscle%2520cell%2520response%2520to%2520IL1b%252c%252000hr00min%252c%2520biol_rep1%2520%2528LK31%2529.CNhs13349.12652-134H6.hg38.nobarcode.ctss.bed.gz
|id=FF:12652-134H6
|is_a=EFO:0002091;;FF:0000556
|is_obsolete=
|library_id=CNhs13349
|library_id_phase_based=2:CNhs13349
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;12652
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;12652
|name=Aortic smooth muscle cell response to IL1b
|namespace=FANTOM5
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|rna_box=134
|rna_catalog_number=
|rna_concentration=0.15
|rna_extraction_protocol=
|rna_lot_number=
|rna_od260/230=
|rna_od260/280=2.090010977
|rna_position=H6
|rna_rin=
|rna_sample_type=
|rna_tube_id=134H6
|rna_weight_ug=4.57
|sample_age=
|sample_category=time courses
|sample_cell_catalog=
|sample_cell_line=
|sample_cell_lot=
|sample_cell_type=smooth muscle cell, vascular associated
|sample_collaboration=Levon Khachigian (University of New South Wales)
|sample_company=
|sample_description=
|sample_dev_stage=
|sample_disease=
|sample_donor(cell lot)=rep1
|sample_ethnicity=
|sample_experimental_condition=Aortic smooth muscle cell response to interleukin 1b
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.36164274924968e-205!GO:0005737;cytoplasm;2.24020608356257e-195!GO:0043226;organelle;3.05742165686626e-156!GO:0043229;intracellular organelle;6.7435051248252e-156!GO:0043231;intracellular membrane-bound organelle;3.10234005815442e-152!GO:0043227;membrane-bound organelle;5.35336005771801e-152!GO:0044444;cytoplasmic part;2.01962040591437e-147!GO:0044422;organelle part;4.51563216008865e-125!GO:0044446;intracellular organelle part;1.46892701409836e-123!GO:0032991;macromolecular complex;3.30106487721132e-93!GO:0030529;ribonucleoprotein complex;6.37498210856462e-87!GO:0005515;protein binding;7.53038278262757e-75!GO:0044237;cellular metabolic process;1.14904895875103e-71!GO:0044238;primary metabolic process;3.09280996728044e-71!GO:0005739;mitochondrion;2.49760100360427e-69!GO:0043233;organelle lumen;8.18324731393751e-66!GO:0031974;membrane-enclosed lumen;8.18324731393751e-66!GO:0043170;macromolecule metabolic process;7.57471045435909e-65!GO:0003723;RNA binding;3.61546510169017e-60!GO:0005840;ribosome;1.6994094775221e-55!GO:0044428;nuclear part;3.09552829245746e-55!GO:0031090;organelle membrane;9.8149650559515e-53!GO:0019538;protein metabolic process;1.24713708033136e-52!GO:0006412;translation;5.72308280547277e-52!GO:0003735;structural constituent of ribosome;9.77448632188371e-50!GO:0044260;cellular macromolecule metabolic process;1.90794936786524e-48!GO:0044267;cellular protein metabolic process;2.79359773050753e-47!GO:0044429;mitochondrial part;5.08770417168835e-47!GO:0043234;protein complex;1.06226256465524e-45!GO:0009058;biosynthetic process;3.79871303295545e-45!GO:0033279;ribosomal subunit;5.90454164244704e-44!GO:0016043;cellular component organization and biogenesis;6.71027396486401e-44!GO:0005829;cytosol;9.09834027071291e-44!GO:0044249;cellular biosynthetic process;2.09453213543259e-42!GO:0006396;RNA processing;3.41996721943996e-42!GO:0015031;protein transport;3.89915502510772e-42!GO:0009059;macromolecule biosynthetic process;5.27750258779438e-42!GO:0033036;macromolecule localization;9.88913068829819e-42!GO:0005634;nucleus;1.14067400209757e-41!GO:0045184;establishment of protein localization;9.24134075147047e-40!GO:0008104;protein localization;3.96360844265929e-39!GO:0031967;organelle envelope;4.19792778766806e-37!GO:0031975;envelope;9.42253681454875e-37!GO:0031981;nuclear lumen;2.39036715957789e-36!GO:0016071;mRNA metabolic process;1.40625024010339e-32!GO:0005830;cytosolic ribosome (sensu Eukaryota);3.09718594618651e-32!GO:0008380;RNA splicing;1.18853168202653e-31!GO:0005740;mitochondrial envelope;4.65400879084654e-31!GO:0046907;intracellular transport;2.27247591000864e-30!GO:0031966;mitochondrial membrane;4.8021869671589e-29!GO:0006397;mRNA processing;8.20437362830131e-29!GO:0043283;biopolymer metabolic process;1.52968527481082e-28!GO:0022613;ribonucleoprotein complex biogenesis and assembly;6.44316108374266e-28!GO:0019866;organelle inner membrane;6.94237310540136e-28!GO:0065003;macromolecular complex assembly;1.09977342809969e-27!GO:0010467;gene expression;1.67753143702066e-27!GO:0044445;cytosolic part;4.4739974865556e-27!GO:0005743;mitochondrial inner membrane;1.12101810343236e-26!GO:0006886;intracellular protein transport;4.5003457482999e-26!GO:0006996;organelle organization and biogenesis;7.70919893255377e-25!GO:0006119;oxidative phosphorylation;9.4644790075502e-25!GO:0043228;non-membrane-bound organelle;4.84445241805116e-24!GO:0043232;intracellular non-membrane-bound organelle;4.84445241805116e-24!GO:0022607;cellular component assembly;7.00319314841292e-24!GO:0005783;endoplasmic reticulum;4.33721758986231e-23!GO:0005681;spliceosome;6.64634611555326e-23!GO:0015934;large ribosomal subunit;8.8104719818233e-23!GO:0044455;mitochondrial membrane part;8.8314631454764e-23!GO:0015935;small ribosomal subunit;3.18081611356044e-22!GO:0005654;nucleoplasm;3.20444114514977e-22!GO:0006457;protein folding;4.04412645925444e-22!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.69397200990095e-21!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;5.75717070359586e-21!GO:0016462;pyrophosphatase activity;8.2314461265624e-21!GO:0016817;hydrolase activity, acting on acid anhydrides;9.33556793305339e-21!GO:0012505;endomembrane system;3.78631115967742e-20!GO:0017111;nucleoside-triphosphatase activity;6.76127570880003e-20!GO:0031980;mitochondrial lumen;2.10944387161912e-19!GO:0005759;mitochondrial matrix;2.10944387161912e-19!GO:0051641;cellular localization;2.60212509808152e-19!GO:0051649;establishment of cellular localization;2.91060344484382e-19!GO:0048770;pigment granule;9.12912676284432e-19!GO:0042470;melanosome;9.12912676284432e-19!GO:0044432;endoplasmic reticulum part;1.5267771568222e-18!GO:0044451;nucleoplasm part;2.11641985734553e-18!GO:0005746;mitochondrial respiratory chain;2.70376897369481e-18!GO:0022618;protein-RNA complex assembly;7.70411559083867e-18!GO:0051186;cofactor metabolic process;1.24507457304901e-17!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.37999385766793e-17!GO:0005794;Golgi apparatus;2.4093252453752e-17!GO:0000502;proteasome complex (sensu Eukaryota);7.97765669724279e-17!GO:0000166;nucleotide binding;9.44690371801721e-17!GO:0050136;NADH dehydrogenase (quinone) activity;1.02410519888133e-16!GO:0003954;NADH dehydrogenase activity;1.02410519888133e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.02410519888133e-16!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.16184881651811e-16!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.30598417769163e-16!GO:0016874;ligase activity;8.63661478535406e-16!GO:0008134;transcription factor binding;1.34126628539316e-15!GO:0005761;mitochondrial ribosome;1.66128890943092e-15!GO:0000313;organellar ribosome;1.66128890943092e-15!GO:0008135;translation factor activity, nucleic acid binding;1.77124647665876e-15!GO:0006512;ubiquitin cycle;2.14492128505501e-15!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.94356879912963e-15!GO:0043285;biopolymer catabolic process;3.01391593435958e-15!GO:0005730;nucleolus;3.19211093406884e-15!GO:0030964;NADH dehydrogenase complex (quinone);8.7941420024636e-15!GO:0045271;respiratory chain complex I;8.7941420024636e-15!GO:0005747;mitochondrial respiratory chain complex I;8.7941420024636e-15!GO:0042775;organelle ATP synthesis coupled electron transport;8.85421918472004e-15!GO:0042773;ATP synthesis coupled electron transport;8.85421918472004e-15!GO:0048193;Golgi vesicle transport;9.07816698451149e-15!GO:0044265;cellular macromolecule catabolic process;1.06278825317168e-14!GO:0009057;macromolecule catabolic process;1.11659753242821e-14!GO:0051082;unfolded protein binding;1.42840514136038e-14!GO:0016192;vesicle-mediated transport;1.80935660907095e-14!GO:0006259;DNA metabolic process;1.86911464756818e-14!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.03665066899025e-14!GO:0030163;protein catabolic process;4.25036679774552e-14!GO:0051603;proteolysis involved in cellular protein catabolic process;5.52913941304024e-14!GO:0044257;cellular protein catabolic process;9.10822780181168e-14!GO:0044248;cellular catabolic process;9.10822780181168e-14!GO:0019941;modification-dependent protein catabolic process;1.02177162408689e-13!GO:0043632;modification-dependent macromolecule catabolic process;1.02177162408689e-13!GO:0006732;coenzyme metabolic process;1.34709587932313e-13!GO:0006511;ubiquitin-dependent protein catabolic process;2.12074841484681e-13!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.38475288891261e-13!GO:0006605;protein targeting;3.75630135255649e-13!GO:0003743;translation initiation factor activity;7.19277647039567e-13!GO:0005789;endoplasmic reticulum membrane;8.10131917133148e-13!GO:0012501;programmed cell death;1.28456882351836e-12!GO:0009055;electron carrier activity;2.19024940663668e-12!GO:0006915;apoptosis;3.00087631389367e-12!GO:0005793;ER-Golgi intermediate compartment;3.9692795833152e-12!GO:0000398;nuclear mRNA splicing, via spliceosome;5.48748899012893e-12!GO:0000375;RNA splicing, via transesterification reactions;5.48748899012893e-12!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;5.48748899012893e-12!GO:0009259;ribonucleotide metabolic process;1.37393655752316e-11!GO:0006413;translational initiation;1.44398401781114e-11!GO:0017076;purine nucleotide binding;1.67111742183853e-11!GO:0032553;ribonucleotide binding;1.98726547101875e-11!GO:0032555;purine ribonucleotide binding;1.98726547101875e-11!GO:0008219;cell death;2.42260047610098e-11!GO:0016265;death;2.42260047610098e-11!GO:0043412;biopolymer modification;3.13401453349825e-11!GO:0006163;purine nucleotide metabolic process;3.38870623692354e-11!GO:0042254;ribosome biogenesis and assembly;5.00456078155479e-11!GO:0009150;purine ribonucleotide metabolic process;5.00456078155479e-11!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.04043768998498e-10!GO:0003712;transcription cofactor activity;1.07349386425946e-10!GO:0003676;nucleic acid binding;1.26635709723886e-10!GO:0048523;negative regulation of cellular process;1.33188614415834e-10!GO:0006164;purine nucleotide biosynthetic process;1.85859176355235e-10!GO:0009260;ribonucleotide biosynthetic process;2.58189972473641e-10!GO:0009152;purine ribonucleotide biosynthetic process;2.64284749818444e-10!GO:0008565;protein transporter activity;2.99176415045217e-10!GO:0006464;protein modification process;3.04402730673325e-10!GO:0007049;cell cycle;6.38361134893807e-10!GO:0006446;regulation of translational initiation;7.04833113393025e-10!GO:0016887;ATPase activity;7.05859318108184e-10!GO:0009199;ribonucleoside triphosphate metabolic process;7.66967763707745e-10!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;9.00247284852637e-10!GO:0009141;nucleoside triphosphate metabolic process;1.31238938651244e-09!GO:0042623;ATPase activity, coupled;1.40212739068377e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.47108637639982e-09!GO:0009144;purine nucleoside triphosphate metabolic process;1.47108637639982e-09!GO:0003924;GTPase activity;2.96117953187518e-09!GO:0015986;ATP synthesis coupled proton transport;3.29583057640342e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;3.29583057640342e-09!GO:0048519;negative regulation of biological process;3.29583057640342e-09!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;3.96163280318905e-09!GO:0016491;oxidoreductase activity;4.32220943741227e-09!GO:0051188;cofactor biosynthetic process;4.66664294542658e-09!GO:0009142;nucleoside triphosphate biosynthetic process;5.75718205075555e-09!GO:0009201;ribonucleoside triphosphate biosynthetic process;5.75718205075555e-09!GO:0009056;catabolic process;5.95020412483746e-09!GO:0019829;cation-transporting ATPase activity;6.47592750194725e-09!GO:0019787;small conjugating protein ligase activity;7.95318097303994e-09!GO:0046034;ATP metabolic process;8.90398479501954e-09!GO:0043069;negative regulation of programmed cell death;9.80818312024099e-09!GO:0008639;small protein conjugating enzyme activity;1.00641352141764e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.08487408339373e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.08487408339373e-08!GO:0006399;tRNA metabolic process;1.11063364564686e-08!GO:0005768;endosome;1.12896629969563e-08!GO:0006888;ER to Golgi vesicle-mediated transport;1.28539210567173e-08!GO:0009060;aerobic respiration;1.57320516491407e-08!GO:0004842;ubiquitin-protein ligase activity;1.83494632055562e-08!GO:0051246;regulation of protein metabolic process;2.04179098734995e-08!GO:0043067;regulation of programmed cell death;2.04282854622897e-08!GO:0006916;anti-apoptosis;2.11749694626592e-08!GO:0043066;negative regulation of apoptosis;2.18100337442666e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.30381368098942e-08!GO:0016604;nuclear body;2.42148095600435e-08!GO:0042981;regulation of apoptosis;2.82366959531492e-08!GO:0015078;hydrogen ion transmembrane transporter activity;2.96870475177869e-08!GO:0005524;ATP binding;3.0296596805246e-08!GO:0006913;nucleocytoplasmic transport;5.00032191888668e-08!GO:0032559;adenyl ribonucleotide binding;5.06297321359047e-08!GO:0030554;adenyl nucleotide binding;5.15661258432375e-08!GO:0016070;RNA metabolic process;5.15661258432375e-08!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;5.29493344767241e-08!GO:0006754;ATP biosynthetic process;5.3020008689359e-08!GO:0006753;nucleoside phosphate metabolic process;5.3020008689359e-08!GO:0005788;endoplasmic reticulum lumen;6.28245783300308e-08!GO:0009117;nucleotide metabolic process;6.48160596855803e-08!GO:0045333;cellular respiration;6.5621319004157e-08!GO:0043687;post-translational protein modification;7.36483771279865e-08!GO:0030120;vesicle coat;7.5154154968716e-08!GO:0030662;coated vesicle membrane;7.5154154968716e-08!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;7.65985287065746e-08!GO:0016881;acid-amino acid ligase activity;8.34712546734598e-08!GO:0051169;nuclear transport;8.88762050294135e-08!GO:0005635;nuclear envelope;1.02130374322879e-07!GO:0030532;small nuclear ribonucleoprotein complex;1.1451311041468e-07!GO:0044453;nuclear membrane part;1.2056283111842e-07!GO:0044431;Golgi apparatus part;1.30425569940338e-07!GO:0048475;coated membrane;1.47239546950336e-07!GO:0030117;membrane coat;1.47239546950336e-07!GO:0006974;response to DNA damage stimulus;1.5730057310991e-07!GO:0031965;nuclear membrane;1.66070888615522e-07!GO:0006325;establishment and/or maintenance of chromatin architecture;1.71548393091163e-07!GO:0016787;hydrolase activity;1.8764399244053e-07!GO:0016469;proton-transporting two-sector ATPase complex;2.28469670718543e-07!GO:0005773;vacuole;2.75612901898546e-07!GO:0007005;mitochondrion organization and biogenesis;3.1644815359476e-07!GO:0065004;protein-DNA complex assembly;3.16513645240814e-07!GO:0016607;nuclear speck;4.0997309970698e-07!GO:0006461;protein complex assembly;4.2267425816256e-07!GO:0006323;DNA packaging;4.58604130721402e-07!GO:0008026;ATP-dependent helicase activity;4.66004298107877e-07!GO:0005839;proteasome core complex (sensu Eukaryota);4.88142824488127e-07!GO:0051726;regulation of cell cycle;5.22867395265284e-07!GO:0009108;coenzyme biosynthetic process;5.26081004210821e-07!GO:0017038;protein import;5.61469494279878e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;5.99877889103975e-07!GO:0004812;aminoacyl-tRNA ligase activity;5.99877889103975e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;5.99877889103975e-07!GO:0000074;regulation of progression through cell cycle;6.51699884036923e-07!GO:0004386;helicase activity;7.1771990573497e-07!GO:0006364;rRNA processing;7.61492726272328e-07!GO:0022402;cell cycle process;7.80796638664862e-07!GO:0043038;amino acid activation;8.99860887075881e-07!GO:0006418;tRNA aminoacylation for protein translation;8.99860887075881e-07!GO:0043039;tRNA aminoacylation;8.99860887075881e-07!GO:0016072;rRNA metabolic process;9.38467566175451e-07!GO:0006091;generation of precursor metabolites and energy;9.79767457483045e-07!GO:0006099;tricarboxylic acid cycle;1.01593195557827e-06!GO:0046356;acetyl-CoA catabolic process;1.01593195557827e-06!GO:0044440;endosomal part;1.01949915929899e-06!GO:0010008;endosome membrane;1.01949915929899e-06!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.05626723911094e-06!GO:0006366;transcription from RNA polymerase II promoter;1.10156874434702e-06!GO:0005667;transcription factor complex;1.27259450545441e-06!GO:0045259;proton-transporting ATP synthase complex;1.29254725167575e-06!GO:0005525;GTP binding;1.60198877979802e-06!GO:0051187;cofactor catabolic process;1.77976495331316e-06!GO:0016853;isomerase activity;1.93439007764298e-06!GO:0003714;transcription corepressor activity;2.37808966293796e-06!GO:0051276;chromosome organization and biogenesis;2.51370722932142e-06!GO:0031252;leading edge;2.55675858872043e-06!GO:0005770;late endosome;2.5639856128933e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;2.56828334737037e-06!GO:0006084;acetyl-CoA metabolic process;2.68725619089554e-06!GO:0031988;membrane-bound vesicle;2.71422519210888e-06!GO:0016023;cytoplasmic membrane-bound vesicle;2.78199612358397e-06!GO:0006752;group transfer coenzyme metabolic process;3.21204999933312e-06!GO:0000323;lytic vacuole;3.34810128642599e-06!GO:0005764;lysosome;3.34810128642599e-06!GO:0065002;intracellular protein transport across a membrane;3.45099983727795e-06!GO:0005762;mitochondrial large ribosomal subunit;4.17633362035614e-06!GO:0000315;organellar large ribosomal subunit;4.17633362035614e-06!GO:0016859;cis-trans isomerase activity;4.92445557216854e-06!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;5.06265184305814e-06!GO:0000245;spliceosome assembly;5.13936821916088e-06!GO:0000139;Golgi membrane;5.34847668663471e-06!GO:0006333;chromatin assembly or disassembly;5.36570952883362e-06!GO:0009109;coenzyme catabolic process;5.8927630012363e-06!GO:0048522;positive regulation of cellular process;6.13818271877062e-06!GO:0005643;nuclear pore;7.208613296925e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;7.2641733045463e-06!GO:0006281;DNA repair;8.98498397133642e-06!GO:0005798;Golgi-associated vesicle;9.00977109162581e-06!GO:0032446;protein modification by small protein conjugation;1.35948113074582e-05!GO:0004298;threonine endopeptidase activity;1.68011408493068e-05!GO:0031982;vesicle;1.75086084406528e-05!GO:0006613;cotranslational protein targeting to membrane;1.78083122791448e-05!GO:0019843;rRNA binding;1.95370026453405e-05!GO:0032561;guanyl ribonucleotide binding;2.05092452823188e-05!GO:0019001;guanyl nucleotide binding;2.05092452823188e-05!GO:0000278;mitotic cell cycle;2.05685193034591e-05!GO:0031410;cytoplasmic vesicle;2.09676059824115e-05!GO:0016564;transcription repressor activity;2.20622281630986e-05!GO:0006334;nucleosome assembly;2.28829914900059e-05!GO:0003713;transcription coactivator activity;2.2933216045061e-05!GO:0016567;protein ubiquitination;2.63074086098762e-05!GO:0003697;single-stranded DNA binding;3.24364637899258e-05!GO:0009719;response to endogenous stimulus;3.28937891635293e-05!GO:0045786;negative regulation of progression through cell cycle;3.30314731906622e-05!GO:0046930;pore complex;3.34805262009929e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;3.62548599972972e-05!GO:0051789;response to protein stimulus;3.62548599972972e-05!GO:0006986;response to unfolded protein;3.62548599972972e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;3.71422868766033e-05!GO:0015399;primary active transmembrane transporter activity;3.71422868766033e-05!GO:0015980;energy derivation by oxidation of organic compounds;4.16357557466887e-05!GO:0005905;coated pit;4.41329847620724e-05!GO:0030867;rough endoplasmic reticulum membrane;4.75836270085427e-05!GO:0045454;cell redox homeostasis;4.78453193401915e-05!GO:0008361;regulation of cell size;4.92703584467801e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;5.22996143767695e-05!GO:0005852;eukaryotic translation initiation factor 3 complex;5.24695872295603e-05!GO:0033116;ER-Golgi intermediate compartment membrane;5.25592246920195e-05!GO:0003724;RNA helicase activity;5.80161085088932e-05!GO:0050794;regulation of cellular process;6.04809497432673e-05!GO:0016049;cell growth;6.1671098478554e-05!GO:0016740;transferase activity;6.81092826163509e-05!GO:0016563;transcription activator activity;6.89732456175917e-05!GO:0000314;organellar small ribosomal subunit;7.26523070083621e-05!GO:0005763;mitochondrial small ribosomal subunit;7.26523070083621e-05!GO:0031497;chromatin assembly;7.44522361332082e-05!GO:0030036;actin cytoskeleton organization and biogenesis;7.73836055141068e-05!GO:0030133;transport vesicle;8.35943333432581e-05!GO:0001558;regulation of cell growth;8.8592201047213e-05!GO:0008654;phospholipid biosynthetic process;8.95123238543807e-05!GO:0009165;nucleotide biosynthetic process;9.31771395004305e-05!GO:0031968;organelle outer membrane;0.000124764637728856!GO:0006403;RNA localization;0.000126062744967127!GO:0031324;negative regulation of cellular metabolic process;0.000132454628711449!GO:0050657;nucleic acid transport;0.000134004464210912!GO:0051236;establishment of RNA localization;0.000134004464210912!GO:0050658;RNA transport;0.000134004464210912!GO:0051170;nuclear import;0.00013418181456541!GO:0016044;membrane organization and biogenesis;0.000137110976768633!GO:0019867;outer membrane;0.000144128608990881!GO:0043566;structure-specific DNA binding;0.000144436405107151!GO:0000785;chromatin;0.000155630521034571!GO:0000151;ubiquitin ligase complex;0.000164077924966769!GO:0043623;cellular protein complex assembly;0.000178423479895837!GO:0006793;phosphorus metabolic process;0.000185226436426609!GO:0006796;phosphate metabolic process;0.000185226436426609!GO:0005048;signal sequence binding;0.000188679939992013!GO:0043021;ribonucleoprotein binding;0.000189308907492668!GO:0016779;nucleotidyltransferase activity;0.000214689829572582!GO:0005769;early endosome;0.000231460874449765!GO:0006606;protein import into nucleus;0.000237516878587155!GO:0007243;protein kinase cascade;0.000262431277975442!GO:0006260;DNA replication;0.000272112668879861!GO:0016310;phosphorylation;0.000281865896865965!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000287749945670649!GO:0005885;Arp2/3 protein complex;0.000315292540657475!GO:0004576;oligosaccharyl transferase activity;0.000328070680991514!GO:0008250;oligosaccharyl transferase complex;0.000339733390445999!GO:0005694;chromosome;0.000340443725053379!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.000373374759859615!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00044010995343271!GO:0044262;cellular carbohydrate metabolic process;0.000445434692191018!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000451360760492017!GO:0030029;actin filament-based process;0.000454116572783245!GO:0006612;protein targeting to membrane;0.000454784830113839!GO:0051427;hormone receptor binding;0.000454784830113839!GO:0003899;DNA-directed RNA polymerase activity;0.000456497591877646!GO:0005741;mitochondrial outer membrane;0.000480639104060721!GO:0009892;negative regulation of metabolic process;0.000490785027267679!GO:0006414;translational elongation;0.000495477765934204!GO:0043284;biopolymer biosynthetic process;0.000500662322968932!GO:0015630;microtubule cytoskeleton;0.00051540917440545!GO:0016568;chromatin modification;0.000517223485882689!GO:0031072;heat shock protein binding;0.000631585014579409!GO:0030663;COPI coated vesicle membrane;0.000647635775868379!GO:0030126;COPI vesicle coat;0.000647635775868379!GO:0048518;positive regulation of biological process;0.000670905318344715!GO:0043492;ATPase activity, coupled to movement of substances;0.000733854042561259!GO:0051920;peroxiredoxin activity;0.000744962120634207!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000791117650660353!GO:0044427;chromosomal part;0.000858668342360812!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000858668342360812!GO:0018196;peptidyl-asparagine modification;0.000865525220001656!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.000865525220001656!GO:0043681;protein import into mitochondrion;0.000865525220001656!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00089193471167004!GO:0035257;nuclear hormone receptor binding;0.000908356706538267!GO:0008186;RNA-dependent ATPase activity;0.000931679963594347!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000933365557145023!GO:0065009;regulation of a molecular function;0.000996364086018325!GO:0015992;proton transport;0.00116994052286933!GO:0008092;cytoskeletal protein binding;0.00117931886425059!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.0011836926595518!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.0011836926595518!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.0011836926595518!GO:0030137;COPI-coated vesicle;0.0012068710242998!GO:0009967;positive regulation of signal transduction;0.00120853191207803!GO:0006818;hydrogen transport;0.00123196765914828!GO:0051028;mRNA transport;0.0012462927729851!GO:0030176;integral to endoplasmic reticulum membrane;0.00127826415867677!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0013916546016033!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00143259293600136!GO:0006626;protein targeting to mitochondrion;0.00159930437650808!GO:0000087;M phase of mitotic cell cycle;0.00161754006011268!GO:0007067;mitosis;0.00182448212501045!GO:0003729;mRNA binding;0.00195418370506342!GO:0007006;mitochondrial membrane organization and biogenesis;0.0020373341230819!GO:0048471;perinuclear region of cytoplasm;0.00208874596634317!GO:0040008;regulation of growth;0.00220749182241109!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00224963470729638!GO:0019899;enzyme binding;0.00229393969145937!GO:0007010;cytoskeleton organization and biogenesis;0.00231103777593219!GO:0005813;centrosome;0.00235567543943647!GO:0022890;inorganic cation transmembrane transporter activity;0.00243016412871612!GO:0004177;aminopeptidase activity;0.00243876229704241!GO:0004004;ATP-dependent RNA helicase activity;0.00248947792192515!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00253141113697707!GO:0046474;glycerophospholipid biosynthetic process;0.00258532094380718!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00258532094380718!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00258532094380718!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00265509168649005!GO:0006839;mitochondrial transport;0.00272334429910252!GO:0005791;rough endoplasmic reticulum;0.002760293205565!GO:0048487;beta-tubulin binding;0.00282200770373361!GO:0000786;nucleosome;0.00285063329877006!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00291168918940712!GO:0048468;cell development;0.0029877314268717!GO:0016272;prefoldin complex;0.00305725586825122!GO:0006118;electron transport;0.00309880213199291!GO:0042802;identical protein binding;0.00320300059695336!GO:0030118;clathrin coat;0.00327637123626142!GO:0050789;regulation of biological process;0.00341760312466142!GO:0005815;microtubule organizing center;0.00345465765605483!GO:0006383;transcription from RNA polymerase III promoter;0.00346581632504419!GO:0048500;signal recognition particle;0.00354023383176295!GO:0051301;cell division;0.00383150268014978!GO:0008033;tRNA processing;0.00389234569829374!GO:0006891;intra-Golgi vesicle-mediated transport;0.00401999390541841!GO:0030658;transport vesicle membrane;0.00402721374035027!GO:0008243;plasminogen activator activity;0.00418045921708546!GO:0016481;negative regulation of transcription;0.00429167096298171!GO:0007040;lysosome organization and biogenesis;0.00435039143644022!GO:0008180;signalosome;0.00442069921729716!GO:0003711;transcription elongation regulator activity;0.00442404843249064!GO:0030027;lamellipodium;0.00461467877996079!GO:0006778;porphyrin metabolic process;0.00461467877996079!GO:0033013;tetrapyrrole metabolic process;0.00461467877996079!GO:0008610;lipid biosynthetic process;0.00480359095492226!GO:0051087;chaperone binding;0.00482109608009953!GO:0046519;sphingoid metabolic process;0.00486115195092018!GO:0007050;cell cycle arrest;0.00490849673403512!GO:0006082;organic acid metabolic process;0.00503692696341584!GO:0046489;phosphoinositide biosynthetic process;0.00507354138029456!GO:0008139;nuclear localization sequence binding;0.00542274766276747!GO:0019752;carboxylic acid metabolic process;0.00543619773869326!GO:0006509;membrane protein ectodomain proteolysis;0.00555147847676461!GO:0033619;membrane protein proteolysis;0.00555147847676461!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00569599673830579!GO:0001726;ruffle;0.00569599673830579!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.00573560584414554!GO:0030134;ER to Golgi transport vesicle;0.00584449591917075!GO:0006897;endocytosis;0.00586927172869532!GO:0010324;membrane invagination;0.00586927172869532!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00587473368568934!GO:0045047;protein targeting to ER;0.00587473368568934!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0059900717712525!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0059900717712525!GO:0015002;heme-copper terminal oxidase activity;0.0059900717712525!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0059900717712525!GO:0004129;cytochrome-c oxidase activity;0.0059900717712525!GO:0030880;RNA polymerase complex;0.00606366094075955!GO:0006740;NADPH regeneration;0.00618613849285433!GO:0006098;pentose-phosphate shunt;0.00618613849285433!GO:0046483;heterocycle metabolic process;0.00643444182002378!GO:0016126;sterol biosynthetic process;0.00674995558750888!GO:0030132;clathrin coat of coated pit;0.0068219533929102!GO:0015631;tubulin binding;0.0069509474567436!GO:0044452;nucleolar part;0.00698697392744234!GO:0017166;vinculin binding;0.00733809475353941!GO:0042168;heme metabolic process;0.00755439253747717!GO:0046467;membrane lipid biosynthetic process;0.00783431260851736!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0078712468957908!GO:0008312;7S RNA binding;0.00797653130868178!GO:0008632;apoptotic program;0.00798572435581894!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00802529478896156!GO:0006892;post-Golgi vesicle-mediated transport;0.00802529478896156!GO:0016363;nuclear matrix;0.00805934104436081!GO:0008047;enzyme activator activity;0.00826073991768558!GO:0006497;protein amino acid lipidation;0.00828182564505082!GO:0007033;vacuole organization and biogenesis;0.00837643678329404!GO:0030127;COPII vesicle coat;0.00844346362132711!GO:0012507;ER to Golgi transport vesicle membrane;0.00844346362132711!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00850382172209172!GO:0051168;nuclear export;0.00855575025350023!GO:0031902;late endosome membrane;0.00866185695406748!GO:0006950;response to stress;0.00867942562519932!GO:0035258;steroid hormone receptor binding;0.00874106992821743!GO:0045045;secretory pathway;0.00874106992821743!GO:0005684;U2-dependent spliceosome;0.00905327441897351!GO:0006672;ceramide metabolic process;0.00913948649402455!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00913948649402455!GO:0030660;Golgi-associated vesicle membrane;0.00976924625869458!GO:0045893;positive regulation of transcription, DNA-dependent;0.00999679200354324!GO:0045941;positive regulation of transcription;0.0100448071234824!GO:0007264;small GTPase mediated signal transduction;0.0100488381538993!GO:0008154;actin polymerization and/or depolymerization;0.0102650580971089!GO:0005869;dynactin complex;0.0105156807519256!GO:0006595;polyamine metabolic process;0.0105156807519256!GO:0030119;AP-type membrane coat adaptor complex;0.010739297304804!GO:0030041;actin filament polymerization;0.010739297304804!GO:0000059;protein import into nucleus, docking;0.0108932496224439!GO:0006352;transcription initiation;0.0109224892483473!GO:0030659;cytoplasmic vesicle membrane;0.011831441787868!GO:0003746;translation elongation factor activity;0.011850737657116!GO:0005862;muscle thin filament tropomyosin;0.0118874499332361!GO:0045792;negative regulation of cell size;0.0119484157569454!GO:0050662;coenzyme binding;0.0119837263808786!GO:0030308;negative regulation of cell growth;0.0119987372960629!GO:0005774;vacuolar membrane;0.0124567645649083!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0126133229376212!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0128770357020442!GO:0000428;DNA-directed RNA polymerase complex;0.0128770357020442!GO:0043022;ribosome binding;0.0130307523539222!GO:0050811;GABA receptor binding;0.0135497502701029!GO:0051539;4 iron, 4 sulfur cluster binding;0.0143073157039662!GO:0022403;cell cycle phase;0.0154726629053526!GO:0051287;NAD binding;0.015546374752206!GO:0006779;porphyrin biosynthetic process;0.0157126972968387!GO:0033014;tetrapyrrole biosynthetic process;0.0157126972968387!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0157126972968387!GO:0044433;cytoplasmic vesicle part;0.0160003676568893!GO:0005832;chaperonin-containing T-complex;0.0162166854199763!GO:0006979;response to oxidative stress;0.0165938748344311!GO:0006007;glucose catabolic process;0.0167166782816382!GO:0031529;ruffle organization and biogenesis;0.0169509384509462!GO:0051540;metal cluster binding;0.0170619312330976!GO:0051536;iron-sulfur cluster binding;0.0170619312330976!GO:0048144;fibroblast proliferation;0.0172522754168378!GO:0048145;regulation of fibroblast proliferation;0.0172522754168378!GO:0000049;tRNA binding;0.0177685936090296!GO:0030521;androgen receptor signaling pathway;0.0179774457898506!GO:0008637;apoptotic mitochondrial changes;0.0181254484475361!GO:0006695;cholesterol biosynthetic process;0.0184288726490977!GO:0006650;glycerophospholipid metabolic process;0.0191040463809392!GO:0007034;vacuolar transport;0.0191187778074479!GO:0030125;clathrin vesicle coat;0.0194144364473479!GO:0030665;clathrin coated vesicle membrane;0.0194144364473479!GO:0030131;clathrin adaptor complex;0.019935006582078!GO:0051128;regulation of cellular component organization and biogenesis;0.0203930055467437!GO:0000209;protein polyubiquitination;0.0206501070398047!GO:0032984;macromolecular complex disassembly;0.0213591224698505!GO:0046426;negative regulation of JAK-STAT cascade;0.0214434426026933!GO:0042158;lipoprotein biosynthetic process;0.0223870348396447!GO:0008320;protein transmembrane transporter activity;0.0229501984586537!GO:0022884;macromolecule transmembrane transporter activity;0.0231923623883565!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0231923623883565!GO:0022408;negative regulation of cell-cell adhesion;0.0236605053512893!GO:0050790;regulation of catalytic activity;0.0236770221987341!GO:0050681;androgen receptor binding;0.0241297355937132!GO:0016197;endosome transport;0.0246172824060134!GO:0000339;RNA cap binding;0.0248241403178956!GO:0031901;early endosome membrane;0.0248241403178956!GO:0044437;vacuolar part;0.0254777880271863!GO:0008022;protein C-terminus binding;0.0256237953323061!GO:0051252;regulation of RNA metabolic process;0.0256237953323061!GO:0006783;heme biosynthetic process;0.0256237953323061!GO:0012506;vesicle membrane;0.0259693801168778!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0261507826859333!GO:0016408;C-acyltransferase activity;0.0264170455367974!GO:0051101;regulation of DNA binding;0.0265649962211488!GO:0006417;regulation of translation;0.0271447188219717!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0271447188219717!GO:0003756;protein disulfide isomerase activity;0.0272052155298233!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0272052155298233!GO:0006739;NADP metabolic process;0.0280580179253165!GO:0048146;positive regulation of fibroblast proliferation;0.0280906544481999!GO:0030833;regulation of actin filament polymerization;0.0282942459247059!GO:0006354;RNA elongation;0.0292690891080198!GO:0032940;secretion by cell;0.0306327554853112!GO:0006402;mRNA catabolic process;0.0315380207048563!GO:0006769;nicotinamide metabolic process;0.0316603238735359!GO:0051348;negative regulation of transferase activity;0.0328180260785363!GO:0030032;lamellipodium biogenesis;0.032876078128082!GO:0008538;proteasome activator activity;0.0328956983978184!GO:0043241;protein complex disassembly;0.0328985640831699!GO:0051271;negative regulation of cell motility;0.0329810127865354!GO:0045926;negative regulation of growth;0.0329810127865354!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0330749133231454!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0331570778072803!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0331570778072803!GO:0031418;L-ascorbic acid binding;0.0338298809545454!GO:0033673;negative regulation of kinase activity;0.0340125346170874!GO:0006469;negative regulation of protein kinase activity;0.0340125346170874!GO:0031371;ubiquitin conjugating enzyme complex;0.0346839754800653!GO:0043624;cellular protein complex disassembly;0.0350720569472967!GO:0006506;GPI anchor biosynthetic process;0.0350890052865407!GO:0051098;regulation of binding;0.0351135231717209!GO:0003690;double-stranded DNA binding;0.0359203179928637!GO:0009889;regulation of biosynthetic process;0.0363647974935156!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0364652996081726!GO:0010257;NADH dehydrogenase complex assembly;0.0364652996081726!GO:0033108;mitochondrial respiratory chain complex assembly;0.0364652996081726!GO:0006520;amino acid metabolic process;0.036600611465986!GO:0005801;cis-Golgi network;0.036600611465986!GO:0030384;phosphoinositide metabolic process;0.0370758001661811!GO:0051329;interphase of mitotic cell cycle;0.0370860745804445!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0370860745804445!GO:0031301;integral to organelle membrane;0.037208106441245!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0372688296671106!GO:0033043;regulation of organelle organization and biogenesis;0.0372688296671106!GO:0031625;ubiquitin protein ligase binding;0.0378262570489949!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0380929514585143!GO:0009303;rRNA transcription;0.0389938350975059!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0393009801815234!GO:0035035;histone acetyltransferase binding;0.0395351968012189!GO:0008234;cysteine-type peptidase activity;0.0396730972887877!GO:0043065;positive regulation of apoptosis;0.0403121141345412!GO:0043433;negative regulation of transcription factor activity;0.0412277645989936!GO:0005092;GDP-dissociation inhibitor activity;0.0412832146577026!GO:0022415;viral reproductive process;0.0415679595826952!GO:0005765;lysosomal membrane;0.0416783477787158!GO:0016251;general RNA polymerase II transcription factor activity;0.0419836599329247!GO:0009003;signal peptidase activity;0.0421303165652842!GO:0043488;regulation of mRNA stability;0.0421303165652842!GO:0043487;regulation of RNA stability;0.0421303165652842!GO:0006401;RNA catabolic process;0.0421303165652842!GO:0045936;negative regulation of phosphate metabolic process;0.0422992075974548!GO:0006378;mRNA polyadenylation;0.042535959060419!GO:0007021;tubulin folding;0.0427411312404261!GO:0008147;structural constituent of bone;0.043024304814971!GO:0006376;mRNA splice site selection;0.043024304814971!GO:0000389;nuclear mRNA 3'-splice site recognition;0.043024304814971!GO:0006289;nucleotide-excision repair;0.0433441130006884!GO:0005758;mitochondrial intermembrane space;0.0434140027833087!GO:0030911;TPR domain binding;0.0434140027833087!GO:0030508;thiol-disulfide exchange intermediate activity;0.0434140027833087!GO:0001953;negative regulation of cell-matrix adhesion;0.0436332157155414!GO:0006505;GPI anchor metabolic process;0.0437930691129051!GO:0007030;Golgi organization and biogenesis;0.0447541008479204!GO:0043068;positive regulation of programmed cell death;0.0449005284983574!GO:0005637;nuclear inner membrane;0.0449065385023435!GO:0008383;manganese superoxide dismutase activity;0.0454105947731535!GO:0001315;age-dependent response to reactive oxygen species;0.0454105947731535!GO:0045892;negative regulation of transcription, DNA-dependent;0.0459181363509619!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0459181363509619!GO:0030145;manganese ion binding;0.0459181363509619!GO:0005665;DNA-directed RNA polymerase II, core complex;0.04598322785763!GO:0007162;negative regulation of cell adhesion;0.046423184451955!GO:0000030;mannosyltransferase activity;0.0477715947305396!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0477725655664214!GO:0031970;organelle envelope lumen;0.047799688437141!GO:0000118;histone deacetylase complex;0.0479488131254388!GO:0030031;cell projection biogenesis;0.0489453571473941!GO:0004287;prolyl oligopeptidase activity;0.0490110347996734!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0493964424591556!GO:0044438;microbody part;0.0493964424591556!GO:0044439;peroxisomal part;0.0493964424591556!GO:0042532;negative regulation of tyrosine phosphorylation of STAT protein;0.0493964424591556!GO:0042518;negative regulation of tyrosine phosphorylation of Stat3 protein;0.0493964424591556!GO:0050732;negative regulation of peptidyl-tyrosine phosphorylation;0.0493964424591556
|sample_id=12652
|sample_note=
|sample_sex=
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=aorta
|time= 00hr00min
|timecourse=AoSMC_response_to_IL1b
|top_motifs=PAX1,9:1.94780218583;ALX4:1.86336053507;NKX3-1:1.66639015817;XBP1:1.51390624454;TP53:1.41224165895;POU1F1:1.38719212601;UFEwm:1.32644518347;ZNF238:1.11321167136;EVI1:1.10945567756;HMGA1,2:1.10623590066;NFE2L1:1.09621331021;GZF1:1.03046874773;TAL1_TCF{3,4,12}:0.901564024994;SRF:0.893922449756;NKX2-2,8:0.892626684838;TFAP4:0.887612377893;EBF1:0.849238781431;ONECUT1,2:0.848304966534;POU3F1..4:0.843003243495;GCM1,2:0.831311552945;DBP:0.808717327857;POU6F1:0.778418163962;ALX1:0.763176901011;CDC5L:0.75057208183;TBP:0.730754820655;GLI1..3:0.73064222722;RXR{A,B,G}:0.701249785912;HMX1:0.684381409711;GFI1B:0.682329191124;MYBL2:0.681753560991;ZBTB6:0.659247789326;PAX4:0.650873672095;HES1:0.636203562458;FOXL1:0.622221016994;NKX3-2:0.613572801016;TLX1..3_NFIC{dimer}:0.596462897714;HOX{A5,B5}:0.572464593972;TEAD1:0.558919268225;NFATC1..3:0.557947316003;EN1,2:0.543212722202;KLF4:0.541256886031;GTF2A1,2:0.529479693941;HOX{A4,D4}:0.465081172938;HBP1_HMGB_SSRP1_UBTF:0.457852614575;ATF6:0.45434034771;TFCP2:0.421675660578;LHX3,4:0.41920044004;PITX1..3:0.398044298888;TBX4,5:0.361287759691;NFE2L2:0.3530869328;ZIC1..3:0.353026460909;BACH2:0.342901515677;FOXM1:0.319898931381;bHLH_family:0.313090507723;GATA4:0.306929601409;ZNF384:0.298697900445;NFIX:0.287895499375;TEF:0.267966260132;FOXD3:0.243874603894;HSF1,2:0.229676799375;PAX8:0.22548285182;HLF:0.222792900218;NKX2-1,4:0.220170681093;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.217857826231;REST:0.211964059902;IKZF1:0.204093476444;PPARG:0.198657351803;NR3C1:0.177476687918;BPTF:0.174193002775;AIRE:0.158833502818;NKX6-1,2:0.155581361041;SMAD1..7,9:0.144947298442;PBX1:0.139111701658;FOXQ1:0.13311214877;SOX17:0.130149089497;PAX6:0.120553724418;HOXA9_MEIS1:0.116676661331;NANOG{mouse}:0.102085922757;AR:0.0952504458155;FOS_FOS{B,L1}_JUN{B,D}:0.0790075192919;PRDM1:0.0558153357279;GTF2I:0.0536429612331;MAFB:0.0515462442082;HAND1,2:0.0282500654696;PAX5:0.0263154016449;RXRA_VDR{dimer}:0.0195088880541;NFKB1_REL_RELA:0.00427095259224;MTE{core}:-0.0307613575391;FOSL2:-0.0349494276833;VSX1,2:-0.0430838652809;FOXP3:-0.0483209251919;NFE2:-0.0603074339547;RUNX1..3:-0.0668050289076;MZF1:-0.0854982536596;ELK1,4_GABP{A,B1}:-0.0895122991252;SOX2:-0.0986773567095;AHR_ARNT_ARNT2:-0.1203485015;TLX2:-0.142356346711;TFAP2{A,C}:-0.147662265006;HNF1A:-0.152543031126;ESR1:-0.158993240797;LEF1_TCF7_TCF7L1,2:-0.171706185485;ADNP_IRX_SIX_ZHX:-0.175271277935;IKZF2:-0.184557660495;POU2F1..3:-0.186235263425;SOX{8,9,10}:-0.189273597829;YY1:-0.194662984074;CDX1,2,4:-0.195957081097;MEF2{A,B,C,D}:-0.20839750191;STAT2,4,6:-0.220357189632;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.221845892441;PATZ1:-0.238289823521;CRX:-0.241442687753;DMAP1_NCOR{1,2}_SMARC:-0.259267711291;PRRX1,2:-0.262465890115;ELF1,2,4:-0.26270141793;PAX2:-0.265218208589;ZBTB16:-0.268905988972;ETS1,2:-0.290109391929;JUN:-0.30359241207;HIF1A:-0.310067429122;TFAP2B:-0.31974095584;NR6A1:-0.320151144418;OCT4_SOX2{dimer}:-0.322116976302;HNF4A_NR2F1,2:-0.32329384936;MAZ:-0.325346322242;MED-1{core}:-0.329462474697;SPZ1:-0.335702958719;NHLH1,2:-0.336009087284;ARID5B:-0.344869978299;NFIL3:-0.357155788241;GFI1:-0.35930021374;SOX5:-0.381431795447;SPI1:-0.381879711252;STAT5{A,B}:-0.383445653755;XCPE1{core}:-0.402327455198;CEBPA,B_DDIT3:-0.406905496007;FOX{I1,J2}:-0.428697648395;NRF1:-0.452405543844;SNAI1..3:-0.454375145235;HOX{A6,A7,B6,B7}:-0.458747780472;MYB:-0.477423423726;IRF1,2:-0.478992592091;MYFfamily:-0.482055861095;HIC1:-0.490473094254;ESRRA:-0.490897169883;SPIB:-0.492947159442;RFX1:-0.504394300263;FOX{D1,D2}:-0.507359521014;ZNF423:-0.511584319803;ZEB1:-0.528883294434;CREB1:-0.530712435199;ZNF143:-0.531012677254;NKX2-3_NKX2-5:-0.542250321249;ZFP161:-0.545821419482;LMO2:-0.56620259876;MTF1:-0.567381817429;RREB1:-0.568751262885;ATF5_CREB3:-0.580909485418;ATF2:-0.586967953241;POU5F1:-0.602261756148;NR1H4:-0.621428693055;FOX{F1,F2,J1}:-0.626631936988;ZNF148:-0.658819194043;TOPORS:-0.664685895321;TFDP1:-0.679587160592;FOXP1:-0.691079721491;E2F1..5:-0.694514747474;CUX2:-0.723403401932;TGIF1:-0.735440799335;GATA6:-0.789495613141;FOXO1,3,4:-0.797327301443;EGR1..3:-0.818521802785;SREBF1,2:-0.861373594492;RFX2..5_RFXANK_RFXAP:-0.881575550495;SP1:-0.903191868233;ATF4:-0.938139949694;STAT1,3:-0.941200128162;NR5A1,2:-0.976155856399;RORA:-0.995978335105;IRF7:-1.00723899868;MYOD1:-1.05154255807;PDX1:-1.07180012588;FOXN1:-1.13273546002;NANOG:-1.15601594546;PAX3,7:-1.18622121647;NFY{A,B,C}:-1.30204562688;FOXA2:-1.39233155104;BREu{core}:-1.54522580694;RBPJ:-1.55998955035;EP300:-1.76570255321;T:-1.86224655859
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:12652-134H6;search_select_hide=table117:FF:12652-134H6
}}
}}

Latest revision as of 18:41, 4 June 2020

Name:Aortic smooth muscle cell response to IL1b
Species:Human (Homo sapiens)
Library ID:CNhs13349
Sample type:time courses
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueaorta
dev stageNA
sexNA
ageNA
cell typesmooth muscle cell, vascular associated
cell lineNA
companyNA
collaborationLevon Khachigian (University of New South Wales)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typeNA
extraction protocol (Details)NA

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005824
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs13349 CAGE DRX008581 DRR009453
Accession ID Hg19

Library idBAMCTSS
CNhs13349 DRZ000878 DRZ002263
Accession ID Hg38

Library idBAMCTSS
CNhs13349 DRZ012228 DRZ013613
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.0679
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.26
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.693
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.0331
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.208
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.198
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.668
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.317
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.208
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.203
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0.786
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-0.0574
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.797
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.284
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.238
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.504
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.823
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.879
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.391
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.518
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13349

Jaspar motifP-value
MA0002.20.523
MA0003.10.406
MA0004.10.624
MA0006.10.295
MA0007.10.323
MA0009.10.777
MA0014.10.966
MA0017.10.632
MA0018.22.27702e-5
MA0019.10.964
MA0024.14.00198e-6
MA0025.10.00204
MA0027.10.814
MA0028.10.578
MA0029.10.984
MA0030.10.0801
MA0031.10.157
MA0035.20.0852
MA0038.10.00193
MA0039.20.0527
MA0040.10.381
MA0041.10.61
MA0042.10.897
MA0043.11.52323e-4
MA0046.10.0555
MA0047.20.33
MA0048.10.233
MA0050.16.61446e-5
MA0051.10.0754
MA0052.10.05
MA0055.10.306
MA0057.10.42
MA0058.10.47
MA0059.10.129
MA0060.15.26532e-11
MA0061.10.151
MA0062.20.00876
MA0065.20.171
MA0066.10.073
MA0067.10.00329
MA0068.10.235
MA0069.10.418
MA0070.10.634
MA0071.10.721
MA0072.10.849
MA0073.10.879
MA0074.10.18
MA0076.10.124
MA0077.10.251
MA0078.10.214
MA0079.20.0589
MA0080.28.55821e-6
MA0081.10.136
MA0083.10.00746
MA0084.10.282
MA0087.10.393
MA0088.10.402
MA0090.10.184
MA0091.10.107
MA0092.10.118
MA0093.10.568
MA0099.20.00444
MA0100.10.189
MA0101.10.753
MA0102.20.145
MA0103.10.826
MA0104.20.752
MA0105.11.79712e-4
MA0106.11.96428e-4
MA0107.10.791
MA0108.20.985
MA0111.10.922
MA0112.20.00331
MA0113.10.516
MA0114.10.679
MA0115.10.194
MA0116.10.021
MA0117.10.58
MA0119.10.0343
MA0122.10.731
MA0124.10.385
MA0125.10.213
MA0131.10.131
MA0135.10.261
MA0136.13.16353e-4
MA0137.20.0974
MA0138.20.227
MA0139.10.208
MA0140.10.527
MA0141.10.273
MA0142.10.615
MA0143.10.241
MA0144.10.568
MA0145.10.224
MA0146.10.807
MA0147.10.84
MA0148.10.839
MA0149.10.154
MA0150.10.755
MA0152.10.0449
MA0153.10.295
MA0154.10.0312
MA0155.10.307
MA0156.10.0238
MA0157.10.614
MA0159.10.145
MA0160.10.426
MA0162.10.0303
MA0163.11.55672e-6
MA0164.10.749
MA0258.10.106
MA0259.10.61



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13349

Novel motifP-value
10.178
100.322
1000.304
1010.911
1020.849
1030.118
1040.874
1050.484
1060.0323
1070.125
1080.257
1090.202
110.0613
1100.126
1110.139
1120.211
1130.0622
1140.0151
1150.334
1160.0596
1170.182
1180.552
1190.195
120.818
1200.0343
1210.993
1220.114
1230.145
1240.975
1250.322
1260.432
1270.711
1280.113
1290.811
130.281
1300.586
1310.685
1320.985
1330.68
1340.773
1350.402
1360.964
1370.143
1380.877
1390.222
140.75
1400.107
1410.628
1420.879
1430.0308
1440.259
1450.288
1460.848
1470.196
1480.0409
1490.00802
150.442
1500.217
1510.666
1520.079
1530.723
1540.678
1550.109
1560.923
1570.182
1580.0308
1590.109
160.0546
1600.0425
1610.965
1620.136
1630.648
1640.0247
1650.916
1660.439
1670.486
1680.605
1690.0836
170.0786
180.0767
190.0541
20.576
200.954
210.451
220.576
230.163
240.775
250.554
260.228
270.253
280.345
290.158
30.117
300.905
310.514
323.88192e-5
330.375
340.652
350.0974
360.235
370.017
380.576
390.37
40.912
400.37
410.692
420.632
430.16
440.0502
450.741
460.0501
470.184
480.235
490.337
50.448
500.744
510.548
520.776
530.551
540.446
550.357
560.504
570.143
580.985
590.0408
60.63
600.388
610.617
620.274
630.223
640.799
650.144
660.78
670.284
680.805
690.43
70.933
700.0287
710.0888
720.512
730.0328
740.0581
750.235
760.375
770.0309
780.429
790.00318
80.019
800.568
810.245
820.0377
830.959
840.938
850.121
860.626
870.175
880.274
890.0332
90.481
900.0791
910.526
920.123
930.567
940.325
950.229
960.305
970.597
980.97
990.078



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs13349


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0000359 (vascular associated smooth muscle cell)
0002539 (aortic smooth muscle cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001135 (smooth muscle tissue)
0000947 (aorta)
0001637 (artery)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0004573 (systemic artery)
0002385 (muscle tissue)
0003509 (arterial blood vessel)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0004237 (blood vessel smooth muscle)
0004695 (arterial system smooth muscle)
0002049 (vasculature)
0010317 (germ layer / neural crest derived structure)
0002111 (artery smooth muscle tissue)
0007798 (vascular system)
0001015 (musculature)
0004178 (aorta smooth muscle tissue)
0002204 (musculoskeletal system)
0004535 (cardiovascular system)
0004571 (systemic arterial system)
0010191 (aortic system)
0000383 (musculature of body)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)

FF: FANTOM5
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000350 (experimentally modified sample)
0000344 (0 minute sample)
0000340 (IL1-beta treatment sample)
0000556 (human Aortic Smooth Muscle cells 0min after treatment with IL1b sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)

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