FF:12182-129A4: Difference between revisions

Latest revision as of 18:33, 4 June 2020

Name:	Whole blood (ribopure), donor090612, donation1
Species:	Human (Homo sapiens)
Library ID:	CNhs11672,RDhi10003
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	blood
dev stage	NA
sex	NA
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	NA
collaboration	Matched_genome_OSC(contact:Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	NA

CAGE Accession numbers

Method		Sample accession id
RNA-Seq		SAMD00013682

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11672		CAGE		DRX008534		DRR009406
RDhi10003		RNA-Seq		DRX012356		DRR013804

Accession ID Hg19

Library id		BAM		CTSS
CNhs11672		DRZ000831		DRZ002216
RDhi10003		DRZ003005

Accession ID Hg38

Library id		BAM		CTSS
CNhs11672		DRZ012181		DRZ013566
RDhi10003

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0787
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0.132
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.373
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0.148
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	1.165
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0.131
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.514
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.394
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0.476
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.446
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.217
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0.361
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.156
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0.512
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.144
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0.217
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.363
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	1.228
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.217
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.568
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.217
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0.469
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.045
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.627
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.217
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.628
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0.111
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.743
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0.145
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0.217
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0.217
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.874
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0.217
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0.361
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11672

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	8.41912e-12
MA0003.1	MA0003.1	0.0358
MA0004.1	MA0004.1	0.643
MA0006.1	MA0006.1	0.507
MA0007.1	MA0007.1	0.892
MA0009.1	MA0009.1	0.0807
MA0014.1	MA0014.1	0.956
MA0017.1	MA0017.1	0.0548
MA0018.2	MA0018.2	0.245
MA0019.1	MA0019.1	0.775
MA0024.1	MA0024.1	0.00927
MA0025.1	MA0025.1	0.225
MA0027.1	MA0027.1	0.589
MA0028.1	MA0028.1	0.643
MA0029.1	MA0029.1	0.737
MA0030.1	MA0030.1	0.0271
MA0031.1	MA0031.1	3.58069e-4
MA0035.2	MA0035.2	6.34146e-4
MA0038.1	MA0038.1	0.0512
MA0039.2	MA0039.2	0.126
MA0040.1	MA0040.1	0.115
MA0041.1	MA0041.1	0.156
MA0042.1	MA0042.1	0.0693
MA0043.1	MA0043.1	0.0998
MA0046.1	MA0046.1	0.586
MA0047.2	MA0047.2	0.193
MA0048.1	MA0048.1	0.103
MA0050.1	MA0050.1	7.46691e-6
MA0051.1	MA0051.1	0.0232
MA0052.1	MA0052.1	0.0843
MA0055.1	MA0055.1	0.0372
MA0057.1	MA0057.1	0.964
MA0058.1	MA0058.1	0.628
MA0059.1	MA0059.1	0.592
MA0060.1	MA0060.1	9.2617e-4
MA0061.1	MA0061.1	0.0159
MA0062.2	MA0062.2	1.63826e-4
MA0065.2	MA0065.2	0.149
MA0066.1	MA0066.1	0.246
MA0067.1	MA0067.1	0.89
MA0068.1	MA0068.1	0.606
MA0069.1	MA0069.1	0.796
MA0070.1	MA0070.1	0.0269
MA0071.1	MA0071.1	0.55
MA0072.1	MA0072.1	0.724
MA0073.1	MA0073.1	0.266
MA0074.1	MA0074.1	0.69
MA0076.1	MA0076.1	0.198
MA0077.1	MA0077.1	0.22
MA0078.1	MA0078.1	0.914
MA0079.2	MA0079.2	0.933
MA0080.2	MA0080.2	1.18686e-17
MA0081.1	MA0081.1	0.00158
MA0083.1	MA0083.1	0.672
MA0084.1	MA0084.1	0.551
MA0087.1	MA0087.1	0.764
MA0088.1	MA0088.1	0.426
MA0090.1	MA0090.1	0.0261
MA0091.1	MA0091.1	0.416
MA0092.1	MA0092.1	0.863
MA0093.1	MA0093.1	0.502
MA0099.2	MA0099.2	0.326
MA0100.1	MA0100.1	0.975
MA0101.1	MA0101.1	0.336
MA0102.2	MA0102.2	2.38069e-6
MA0103.1	MA0103.1	0.156
MA0104.2	MA0104.2	0.565
MA0105.1	MA0105.1	1.79821e-4
MA0106.1	MA0106.1	0.591
MA0107.1	MA0107.1	0.358
MA0108.2	MA0108.2	2.56597e-4
MA0111.1	MA0111.1	0.302
MA0112.2	MA0112.2	0.00104
MA0113.1	MA0113.1	0.895
MA0114.1	MA0114.1	0.393
MA0115.1	MA0115.1	0.606
MA0116.1	MA0116.1	2.45923e-5
MA0117.1	MA0117.1	0.852
MA0119.1	MA0119.1	0.479
MA0122.1	MA0122.1	0.255
MA0124.1	MA0124.1	0.862
MA0125.1	MA0125.1	0.0429
MA0131.1	MA0131.1	0.511
MA0135.1	MA0135.1	0.324
MA0136.1	MA0136.1	1.14988e-23
MA0137.2	MA0137.2	0.0329
MA0138.2	MA0138.2	0.376
MA0139.1	MA0139.1	0.211
MA0140.1	MA0140.1	7.46312e-11
MA0141.1	MA0141.1	0.607
MA0142.1	MA0142.1	0.776
MA0143.1	MA0143.1	0.785
MA0144.1	MA0144.1	0.0457
MA0145.1	MA0145.1	0.0986
MA0146.1	MA0146.1	0.00627
MA0147.1	MA0147.1	0.497
MA0148.1	MA0148.1	0.525
MA0149.1	MA0149.1	0.536
MA0150.1	MA0150.1	0.00212
MA0152.1	MA0152.1	0.142
MA0153.1	MA0153.1	0.134
MA0154.1	MA0154.1	0.0022
MA0155.1	MA0155.1	0.601
MA0156.1	MA0156.1	5.0319e-18
MA0157.1	MA0157.1	0.00309
MA0159.1	MA0159.1	0.171
MA0160.1	MA0160.1	0.362
MA0162.1	MA0162.1	0.346
MA0163.1	MA0163.1	1.26111e-4
MA0164.1	MA0164.1	0.357
MA0258.1	MA0258.1	0.0203
MA0259.1	MA0259.1	0.299

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11672

Novel motif	Logo	P-value
1	1	0.189
10	10	0.0913
100	100	0.562
101	101	0.359
102	102	0.613
103	103	0.121
104	104	0.818
105	105	0.103
106	106	0.0483
107	107	0.772
108	108	0.785
109	109	0.0853
11	11	0.102
110	110	0.345
111	111	0.291
112	112	0.111
113	113	0.174
114	114	0.0596
115	115	0.258
116	116	1
117	117	0.0648
118	118	0.359
119	119	0.452
12	12	0.382
120	120	0.664
121	121	0.648
122	122	0.257
123	123	0.23
124	124	0.0629
125	125	0.13
126	126	0.187
127	127	0.32
128	128	0.0469
129	129	0.513
13	13	0.844
130	130	0.965
131	131	0.578
132	132	0.398
133	133	0.859
134	134	0.971
135	135	0.329
136	136	0.99
137	137	0.0055
138	138	0.0703
139	139	0.015
14	14	0.186
140	140	0.519
141	141	0.401
142	142	0.984
143	143	0.00335
144	144	0.937
145	145	0.357
146	146	0.858
147	147	0.232
148	148	0.274
149	149	0.57
15	15	0.0553
150	150	0.999
151	151	0.263
152	152	0.348
153	153	0.709
154	154	0.969
155	155	0.21
156	156	0.727
157	157	0.348
158	158	0.0888
159	159	0.3
16	16	0.454
160	160	0.618
161	161	0.459
162	162	0.574
163	163	0.332
164	164	0.282
165	165	0.127
166	166	0.9
167	167	0.783
168	168	0.0558
169	169	0.0112
17	17	0.376
18	18	0.375
19	19	0.343
2	2	0.228
20	20	0.596
21	21	0.603
22	22	0.174
23	23	0.0511
24	24	0.0707
25	25	0.156
26	26	0.137
27	27	0.0956
28	28	0.479
29	29	0.477
3	3	0.0979
30	30	0.858
31	31	0.531
32	32	0.864
33	33	0.549
34	34	0.219
35	35	0.284
36	36	0.418
37	37	0.163
38	38	0.301
39	39	0.996
4	4	0.87
40	40	0.331
41	41	0.0284
42	42	0.266
43	43	0.144
44	44	0.447
45	45	0.365
46	46	0.132
47	47	0.207
48	48	0.294
49	49	0.138
5	5	0.236
50	50	0.981
51	51	0.405
52	52	0.411
53	53	0.153
54	54	0.252
55	55	0.131
56	56	0.254
57	57	0.721
58	58	0.0565
59	59	0.0522
6	6	0.619
60	60	0.0464
61	61	0.273
62	62	0.0147
63	63	0.518
64	64	0.393
65	65	0.181
66	66	0.577
67	67	0.208
68	68	0.405
69	69	0.717
7	7	0.14
70	70	0.0642
71	71	0.114
72	72	0.208
73	73	0.351
74	74	0.822
75	75	0.131
76	76	0.649
77	77	0.644
78	78	0.369
79	79	0.978
8	8	0.501
80	80	0.00932
81	81	0.37
82	82	0.0198
83	83	0.518
84	84	0.498
85	85	0.161
86	86	0.119
87	87	0.592
88	88	0.516
89	89	0.217
9	9	0.249
90	90	0.0296
91	91	0.339
92	92	0.0719
93	93	0.206
94	94	0.0828
95	95	0.605
96	96	0.109
97	97	0.776
98	98	0.0444
99	99	0.447

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11672

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000002 in vivo cell sample
FF:0000281 human whole blood sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000178 (blood)
0000479 (tissue)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000179 (haemolymphatic fluid)
0000463 (organism substance)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010317 (germ layer / neural crest derived structure)
0002390 (hematopoietic system)
0004535 (cardiovascular system)
0002193 (hemolymphoid system)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0010053 (human blood - adult sample)
0000004 (tissue sample)
0000281 (human whole blood sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
NA

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=RNA-Seq@SAMD00013682!CAGE@SAMD00005023
+|DRA_sample_Accession=RNA-Seq@SAMD00013682
-|accession_numbers=CAGE;DRX008534;DRR009406;DRZ000831;DRZ002216!RNA-Seq;DRX012356;DRR013804;DRZ003005;
+|accession_numbers=CAGE;DRX008534;DRR009406;DRZ000831;DRZ002216;DRZ012181;DRZ013566!RNA-Seq;DRX012356;DRR013804;DRZ003005;
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000178,UBERON:0000479,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000179,UBERON:0000463,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0002390,UBERON:0004535,UBERON:0002193,UBERON:0001009
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003
@@ Line 13: / Line 13: @@
 |def=
 |expression_enrichment_score=chr11:47400078..47400106,-!p1@SPI1!2.82!658.85!SPI1;;chr12:54694653..54694672,-!p2@NFE2!2.76!568.06!NFE2;;chr2:68592406..68592424,+!p1@PLEK!2.65!450.04!PLEK;;chr12:54694758..54694805,-!p1@NFE2!2.41!304.78!NFE2;;chrX:131622958..131622978,-!p3@MBNL3!2.37!292.46!MBNL3;;chrX:131623026..131623039,-!p5@MBNL3!2.36!226.97!MBNL3;;chrX:131623044..131623089,-!p1@MBNL3!2.34!846.26!MBNL3;;chrX:131622988..131623006,-!p8@MBNL3!2.25!178.33!MBNL3;;chr10:51572339..51572376,+!p4@NCOA4!2.22!355.36!NCOA4;;chr12:54694807..54694832,-!p3@NFE2!2.16!142.66!NFE2;;chrX:70315688..70315709,+!p1@FOXO4!2.14!305.43!FOXO4;;chr10:51572408..51572454,+!p3@NCOA4!2.11!701.65!NCOA4;;chr19:13213511..13213545,-!p2@LYL1!2.07!125.16!LYL1;;chr2:70142232..70142251,+!p1@MXD1!2.04!582.33!MXD1;;chr7:28220506..28220552,-!p3@JAZF1!2.02!103.11!JAZF1;;chr7:28220354..28220441,-!p1@JAZF1!1.93!1223.67!JAZF1;;chr3:128212033..128212051,-!p1@GATA2!1.84!68.09!GATA2;;chr19:12998003..12998021,-!p1@KLF1!1.84!67.44!KLF1;;chr10:51585430..51585448,+!p7@NCOA4!1.81!63.55!NCOA4;;chr10:51585449..51585487,+!p6@NCOA4!1.79!60.96!NCOA4;;chr16:85932760..85932775,+!p1@IRF8!1.76!56.42!IRF8;;chr1:43148855..43148908,+!p4@YBX1!1.72!80.41!YBX1;;chr2:148778973..148779035,+!p3@MBD5!1.71!127.10!MBD5;;chr4:109087445..109087463,-!p1@LEF1!1.71!49.93!LEF1;;chr7:50344289..50344323,+!p1@IKZF1!1.69!47.99!IKZF1;;chr3:141748010..141748030,-!p8@TFDP2!1.67!45.39!TFDP2;;chr11:47400062..47400077,-!p2@SPI1!1.67!45.39!SPI1;;chr1:47697965..47697991,-!p7@TAL1!1.66!44.74!TAL1;;chr20:56195474..56195506,-!p1@ZBP1!1.66!44.74!ZBP1;;chr17:45810594..45810608,+!p1@TBX21!1.66!44.74!TBX21;;chr10:111985713..111985774,+!p2@MXI1!1.65!392.97!MXI1;;chr12:54778471..54778528,-!p1@ZNF385A!1.65!44.10!ZNF385A;;chr11:47400045..47400060,-!p6@SPI1!1.63!42.15!SPI1;;chr7:50343634..50343717,+!p2@IKZF1!1.63!42.15!IKZF1;;chr3:27763807..27763822,-!p1@EOMES!1.62!40.85!EOMES;;chr3:187463179..187463201,-!p2@BCL6!1.61!156.28!BCL6;;chr5:176735063..176735088,-!p2@MXD3!1.61!39.56!MXD3;;chr11:47399947..47399961,-!p3@SPI1!1.61!39.56!SPI1;;chr11:47399996..47400014,-!p4@SPI1!1.57!36.31!SPI1;;chr7:28725715..28725727,+!p3@CREB5!1.56!41.50!CREB5;;chr11:47400032..47400043,-!p5@SPI1!1.56!35.02!SPI1;;chr1:23857325..23857416,-!p2@E2F2!1.55!40.21!E2F2;;chr2:231090433..231090469,+!p1@SP140!1.55!34.37!SP140;;chr10:111967345..111967422,+!p1@MXI1!1.52!501.27!MXI1;;chr5:133451294..133451310,+!p2@TCF7!1.52!32.42!TCF7;;chr7:28725740..28725778,+!p1@CREB5!1.50!264.58!CREB5;;chr19:16435625..16435682,+!p1@KLF2!1.49!904.62!KLF2;;chr21:34442439..34442455,+!p1@OLIG1!1.49!29.83!OLIG1;;chr12:54694738..54694749,-!p5@NFE2!1.46!27.88!NFE2;;chr6:391743..391759,+!p1@IRF4!1.46!27.88!IRF4;;chr9:117150254..117150271,-!p1@AKNA!1.45!72.63!AKNA;;chr19:13213662..13213686,-!p1@LYL1!1.45!39.56!LYL1;;chr2:68592394..68592405,+!p2@PLEK!1.44!26.59!PLEK;;chr2:28618532..28618610,+!p4@FOSL2!1.43!44.10!FOSL2;;chrX:48644984..48645005,+!p1@GATA1!1.42!25.29!GATA1;;chr1:8484007..8484061,-!p13@RERE!1.41!31.13!RERE;;chr6:144385698..144385742,-!p2@PLAGL1!1.41!29.83!PLAGL1;;chr2:231090471..231090504,+!p2@SP140!1.41!24.64!SP140;;chr2:100759010..100759035,-!p1@AFF3!1.40!23.99!AFF3;;chr4:185395633..185395651,-!p2@IRF2!1.39!37.61!IRF2;;chr2:192015701..192015743,-!p1@STAT4!1.39!32.42!STAT4;;chr19:13213555..13213568,-!p5@LYL1!1.39!23.35!LYL1;;chr11:111249993..111250006,-!p1@POU2AF1!1.36!22.05!POU2AF1;;chr12:54691711..54691725,-!p7@NFE2!1.35!21.40!NFE2;;chr2:192015750..192015793,-!p2@STAT4!1.34!27.88!STAT4;;chr19:13213634..13213645,-!p8@LYL1!1.34!20.75!LYL1;;chr2:208031943..208031978,-!p5@KLF7!1.33!27.24!KLF7;;chr5:133450365..133450444,+!p1@TCF7!1.32!89.49!TCF7;;chr10:51565239..51565263,+!p2@NCOA4!1.31!442.26!NCOA4;;chr3:63953435..63953499,+!p1@ATXN7!1.31!19.45!ATXN7;;chr12:53835425..53835437,+!p4@PRR13,p5@PCBP2!1.30!30.48!PCBP2;;chr12:10854646..10854658,-!p24@CSDA!1.30!18.81!CSDA;;chr11:128563948..128564003,+!p1@FLI1!1.28!210.75!FLI1;;chr1:25256756..25256774,-!p1@RUNX3!1.28!33.72!RUNX3;;chr12:54689552..54689574,-!p6@NFE2!1.28!18.16!NFE2;;chr5:142782823..142782854,-!p3@NR3C1!1.27!25.29!NR3C1;;chr17:38020392..38020477,-!p1@IKZF3!1.25!16.86!IKZF3;;chr5:131826457..131826514,-!p1@IRF1!1.24!632.91!IRF1;;chr9:32550965..32551031,-!p4@TOPORS!1.24!25.29!TOPORS;;chr17:38497662..38497713,+!p4@RARA!1.24!18.81!RARA;;chr17:17721569..17721574,-!p9@SREBF1!1.24!16.21!SREBF1;;chrX:107018836..107018862,-!p8@TSC22D3!1.24!16.21!TSC22D3;;chr1:23857128..23857141,-!p6@E2F2!1.24!16.21!E2F2;;chr16:88752889..88752921,-!p1@SNAI3!1.22!18.16!SNAI3;;chr19:50922187..50922204,+!p1@SPIB!1.22!15.56!SPIB;;chr9:137217986..137218049,+!p3@RXRA!1.20!42.15!RXRA;;chr16:3313791..3313834,+!p2@ZNF263!1.20!33.07!ZNF263;;chr9:135854091..135854159,+!p1@GFI1B!1.20!14.91!GFI1B;;chr3:18486354..18486377,-!p2@SATB1!1.19!18.16!SATB1;;chr10:31288398..31288455,-!p2@ZNF438!1.19!16.86!ZNF438;;chrX:106960285..106960299,-!p1@TSC22D3!1.18!374.82!TSC22D3;;chr5:88178983..88179012,-!p1@MEF2C!1.18!107.65!MEF2C;;chr2:70142189..70142223,+!p2@MXD1!1.18!99.22!MXD1;;chr12:54694686..54694697,-!p8@NFE2!1.18!14.27!NFE2;;chr1:23857698..23857733,-!p1@E2F2!1.17!25.29!E2F2;;chr13:41593425..41593480,-!p1@ELF1!1.16!84.30!ELF1;;chrX:106960180..106960197,-!p2@TSC22D3!1.16!51.23!TSC22D3;;chr4:185395191..185395226,-!p4@IRF2!1.16!18.81!IRF2;;chr10:8096631..8096660,+!p1@GATA3!1.16!16.21!GATA3;;chr2:231084659..231084721,-!p1@SP110!1.15!302.84!SP110;;chr7:149470641..149470694,-!p1@ZNF467!1.15!59.01!ZNF467;;chr7:50343895..50343936,+!p5@IKZF1!1.15!12.97!IKZF1;;chr1:47697881..47697910,-!p4@TAL1!1.15!12.97!TAL1;;chr17:37934365..37934387,-!p2@IKZF3!1.15!12.97!IKZF3;;chr9:117160738..117160782,-!p2@AKNA!1.14!52.53!AKNA;;chr6:108881012..108881034,+!p3@FOXO3!1.14!46.04!FOXO3;;chr17:38498402..38498445,+!p3@RARA!1.14!46.04!RARA;;chr19:56879534..56879615,+!p3@ZNF542!1.14!20.10!ZNF542;;chr2:208031542..208031595,-!p2@KLF7!1.13!87.54!KLF7;;chr1:43148792..43148849,+!p2@YBX1!1.12!46.69!YBX1;;chr19:45250948..45250998,+!p3@BCL3!1.12!31.13!BCL3;;chr3:71355163..71355209,-!p5@FOXP1!1.12!16.86!FOXP1;;chr12:54689532..54689551,-!p4@NFE2!1.12!12.32!NFE2;;chr7:64126535..64126559,+!p2@ZNF107!1.11!25.29!ZNF107;;chr20:50159198..50159299,-!p1@NFATC2!1.11!17.51!NFATC2;;chr17:38498594..38498661,+!p2@RARA!1.10!38.91!RARA;;chr6:106546808..106546833,+!p3@PRDM1!1.09!14.27!PRDM1;;chr2:70167296..70167306,+!p3@MXD1!1.06!16.21!MXD1;;chr1:47695003..47695042,-!p2@TAL1!1.06!10.38!TAL1;;chr14:75745523..75745537,+!p1@FOS!1.05!1235.99!FOS;;chr3:71632840..71632857,-!p10@FOXP1!1.03!19.45!FOXP1;;chr7:115670804..115670825,-!p1@TFEC!1.03!9.73!TFEC;;chr2:145277640..145277771,-!p1@ZEB2!1.02!127.75!ZEB2;;chr19:42636586..42636607,-!p1@POU2F2!1.02!26.59!POU2F2;;chr4:185395590..185395627,-!p3@IRF2!1.02!11.67!IRF2;;chr21:30671235..30671253,+!p1@BACH1!1.01!118.67!BACH1;;chr4:106068026..106068084,+!p1@TET2!1.01!85.60!TET2;;chr6:15246200..15246214,+!p2@JARID2!1.01!25.94!JARID2;;chr21:30671211..30671234,+!p3@BACH1!1.00!44.74!BACH1;;chr19:47616992..47617011,-!p4@ZC3H4!1.00!19.45!ZC3H4;;chr8:67525443..67525459,-!p2@MYBL1!1.00!13.62!MYBL1;;chr7:50344144..50344157,+!p6@IKZF1!1.00!9.08!IKZF1;;chr7:50344251..50344288,+!p3@IKZF1!1.00!9.08!IKZF1;;chr4:57522513..57522548,-!p4@HOPX!1.00!9.08!HOPX;;chr10:31288370..31288393,-!p3@ZNF438!1.00!9.08!ZNF438;;chr11:128392273..128392308,-!p2@ETS1!0.99!38.26!ETS1;;chr3:187463220..187463232,-!p3@BCL6!0.99!27.24!BCL6;;chr7:149470540..149470596,-!p2@ZNF467!0.99!11.67!ZNF467;;chr8:71316021..71316068,-!p1@NCOA2!0.98!82.36!NCOA2;;chr2:208394817..208394834,+!p3@CREB1!0.98!35.02!CREB1;;chrX:107018969..107019024,-!p6@TSC22D3!0.97!11.67!TSC22D3;;chr19:13213704..13213726,-!p3@LYL1!0.97!11.02!LYL1;;chrX:107019163..107019179,-!p7@TSC22D3!0.97!9.73!TSC22D3;;chr4:57522166..57522260,-!p2@HOPX!0.97!9.73!HOPX;;chr2:231090344..231090361,-!p3@SP110!0.97!8.43!SP110;;chr17:38020557..38020572,-!p4@IKZF3!0.97!8.43!IKZF3;;chr12:6782377..6782382,-!p15@ZNF384!0.97!8.43!ZNF384;;chr21:34442540..34442560,+!p2@OLIG1!0.97!8.43!OLIG1;;chr6:108882109..108882173,+!p2@FOXO3!0.96!44.74!FOXO3;;chr15:60884706..60884743,-!p1@RORA!0.96!42.80!RORA;;chr14:75988771..75988826,+!p1@BATF!0.96!11.02!BATF;;chr4:38665769..38665801,+!p2@KLF3!0.95!74.57!KLF3;;chr14:69262789..69262822,-!p2@ZFP36L1!0.95!21.40!ZFP36L1;;chr10:64576105..64576133,-!p1@EGR2!0.94!16.21!EGR2;;chr12:124812308..124812313,-!p57@NCOR2!0.94!7.78!NCOR2;;chr6:106546731..106546755,+!p5@PRDM1!0.94!7.78!PRDM1;;chr19:45251395..45251432,+!p8@BCL3!0.94!7.78!BCL3;;chr9:20382446..20382493,-!p4@MLLT3!0.94!7.78!MLLT3;;chr5:140080022..140080042,+!p1@ZMAT2!0.92!412.43!ZMAT2;;chr3:187463248..187463264,-!p1@BCL6!0.92!162.77!BCL6;;chr9:88969339..88969422,-!p2@ZCCHC6!0.92!59.66!ZCCHC6;;chr19:19779619..19779670,+!p1@ZNF101!0.92!21.40!ZNF101;;chr1:221052776..221052799,+!p1@HLX!0.92!13.62!HLX;;chr12:10854595..10854628,-!p7@CSDA!0.92!10.38!CSDA;;chr12:57505121..57505179,-!p1@STAT6!0.91!291.81!STAT6;;chr17:40440481..40440550,+!p1@STAT5A!0.91!53.17!STAT5A;;chr10:8096772..8096787,+!p2@GATA3!0.91!8.43!GATA3;;chr10:111985777..111985788,+!p4@MXI1!0.91!7.13!MXI1;;chr1:151030388..151030419,+!p9@MLLT11!0.91!7.13!MLLT11;;chr1:23857087..23857100,-!p8@E2F2!0.91!7.13!E2F2;;chr1:47691303..47691319,-!p5@TAL1!0.91!7.13!TAL1;;chr4:109089901..109089930,-!p3@LEF1!0.91!7.13!LEF1;;chr14:99738059..99738086,-!p2@BCL11B!0.91!7.13!BCL11B;;chr1:156470494..156470505,-!p3@MEF2D!0.90!10.38!MEF2D;;chr4:140098339..140098392,-!p1@ELF2!0.89!59.01!ELF2;;chr6:91006518..91006570,-!p1@BACH2!0.89!16.21!BACH2;;chr9:88969303..88969335,-!p1@ZCCHC6!0.88!64.20!ZCCHC6;;chr3:71632864..71632885,-!p4@FOXP1!0.88!23.35!FOXP1;;chr6:106534192..106534224,+!p1@PRDM1!0.88!19.45!PRDM1;;chr8:37963466..37963506,+!p3@ASH2L!0.88!8.43!ASH2L;;chr6:108880956..108881011,+!p1@FOXO3!0.87!44.74!FOXO3;;chr1:158979872..158979898,+!p3@IFI16!0.87!20.75!IFI16;;chr2:231084639..231084654,-!p2@SP110!0.87!11.02!SP110;;chr2:68615063..68615089,+!p4@PLEK!0.87!6.48!PLEK;;chr3:18480217..18480239,-!p3@SATB1!0.87!6.48!SATB1;;chr4:109090075..109090095,-!p2@LEF1!0.87!6.48!LEF1;;c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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000178;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 40: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Whole%2520blood%2520%2528ribopure%2529%252c%2520donor090612%252c%2520donation1.CNhs11672.12182-129A4.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Whole%2520blood%2520%2528ribopure%2529%252c%2520donor090612%252c%2520donation1.CNhs11672.12182-129A4.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Whole%2520blood%2520%2528ribopure%2529%252c%2520donor090612%252c%2520donation1.CNhs11672.12182-129A4.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Whole%2520blood%2520%2528ribopure%2529%252c%2520donor090612%252c%2520donation1.CNhs11672.12182-129A4.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Whole%2520blood%2520%2528ribopure%2529%252c%2520donor090612%252c%2520donation1.CNhs11672.12182-129A4.hg38.nobarcode.ctss.bed.gz
 |id=FF:12182-129A4
 |is_a=EFO:0002091;;FF:0000002;;FF:0000281
 |is_obsolete=
-|library_id=CNhs11672
+|library_id=CNhs11672!RDhi10003
 |library_id_phase_based=2:CNhs11672
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;12182
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;12182
 |name=Whole blood (ribopure), donor090612, donation1
 |namespace=FANTOM5
@@ Line 52: / Line 62: @@
 |profile_rnaseq=
 |profile_srnaseq=,,,
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:12182-129A4;search_select_hide=table117:FF:12182-129A4
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FF:12182-129A4: Difference between revisions

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Latest revision as of 18:33, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0