FF:11920-125H3: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00004761 | |DRA_sample_Accession=CAGE@SAMD00004761 | ||
|accession_numbers=CAGE;DRX008183;DRR009055;DRZ000480;DRZ001865 | |accession_numbers=CAGE;DRX008183;DRR009055;DRZ000480;DRZ001865;DRZ011830;DRZ013215 | ||
|ancestors_in_anatomy_facet= | |ancestors_in_anatomy_facet= | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | ||
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|def= | |def= | ||
|expression_enrichment_score=chrX:49121165..49121179,-!p1@FOXP3!2.60!397.72!FOXP3;;chr10:8096631..8096660,+!p1@GATA3!1.89!91.43!GATA3;;chr14:75988831..75988847,+!p2@BATF!1.88!74.78!BATF;;chr17:37934204..37934241,-!p3@IKZF3!1.84!68.93!IKZF3;;chr16:79634624..79634642,-!p1@MAF!1.83!248.02!MAF;;chr10:8096772..8096787,+!p2@GATA3!1.83!78.30!GATA3;;chr17:37934365..37934387,-!p2@IKZF3!1.82!65.68!IKZF3;;chr7:50343634..50343717,+!p2@IKZF1!1.81!63.86!IKZF1;;chr16:79634595..79634620,-!p2@MAF!1.78!105.22!MAF;;chr14:75988771..75988826,+!p1@BATF!1.77!75.30!BATF;;chr2:231090433..231090469,+!p1@SP140!1.65!43.18!SP140;;chr1:25256756..25256774,-!p1@RUNX3!1.53!59.83!RUNX3;;chr19:19779619..19779670,+!p1@ZNF101!1.51!86.10!ZNF101;;chr20:50159198..50159299,-!p1@NFATC2!1.47!40.71!NFATC2;;chr20:56195474..56195506,-!p1@ZBP1!1.47!28.35!ZBP1;;chr3:18486354..18486377,-!p2@SATB1!1.46!34.86!SATB1;;chrY:21906594..21906622,-!p1@KDM5D!1.44!26.79!KDM5D;;chr10:35484053..35484076,+!p1@CREM!1.42!61.65!CREM;;chr15:60884706..60884743,-!p1@RORA!1.41!122.65!RORA;;chr9:117150254..117150271,-!p1@AKNA!1.39!62.95!AKNA;;chr17:38020392..38020477,-!p1@IKZF3!1.39!23.41!IKZF3;;chr2:192015701..192015743,-!p1@STAT4!1.36!29.91!STAT4;;chr2:231090471..231090504,+!p2@SP140!1.36!21.85!SP140;;chr7:50343895..50343936,+!p5@IKZF1!1.35!21.33!IKZF1;;chr6:391743..391759,+!p1@IRF4!1.33!20.29!IRF4;;chr19:19729477..19729542,-!p1@PBX4!1.32!41.75!PBX4;;chr2:192015750..192015793,-!p2@STAT4!1.31!25.88!STAT4;;chr17:37934280..37934299,-!p6@IKZF3!1.30!18.73!IKZF3;;chr7:50344251..50344288,+!p3@IKZF1!1.29!18.47!IKZF1;;chr19:16435625..16435682,+!p1@KLF2!1.28!564.59!KLF2;;chr12:56415246..56415286,+!p2@IKZF4!1.28!18.08!IKZF4;;chr7:50348268..50348366,+!p4@IKZF1!1.28!18.08!IKZF1;;chr20:56195525..56195556,-!p2@ZBP1!1.28!18.08!ZBP1;;chr19:36204309..36204335,+!p1@ZBTB32!1.27!17.56!ZBTB32;;chr1:92951607..92951661,-!p1@GFI1!1.27!17.43!GFI1;;chr6:106546808..106546833,+!p3@PRDM1!1.26!21.46!PRDM1;;chr16:88752889..88752921,-!p1@SNAI3!1.26!20.16!SNAI3;;chr3:12330560..12330579,+!p1@PPARG!1.25!19.25!PPARG;;chr14:99738138..99738163,-!p1@BCL11B!1.24!16.52!BCL11B;;chr7:50344289..50344323,+!p1@IKZF1!1.24!16.26!IKZF1;;chr19:19779686..19779697,+!p3@ZNF101!1.22!18.21!ZNF101;;chr16:79634581..79634592,-!p4@MAF!1.22!15.74!MAF;;chr16:68119324..68119364,+!p1@NFATC3!1.20!65.03!NFATC3;;chr17:45810594..45810608,+!p1@TBX21!1.18!14.18!TBX21;;chr17:38020557..38020572,-!p4@IKZF3!1.14!12.75!IKZF3;;chr3:63953435..63953499,+!p1@ATXN7!1.13!12.36!ATXN7;;chr3:141105705..141105770,+!p4@ZBTB38!1.12!14.70!ZBTB38;;chr7:137620650..137620677,-!p3@CREB3L2!1.11!11.97!CREB3L2;;chr16:79633894..79633954,-!p3@MAF!1.10!22.37!MAF;;chr13:41593425..41593480,-!p1@ELF1!1.09!72.31!ELF1;;chr3:71355163..71355209,-!p5@FOXP1!1.08!15.22!FOXP1;;chr3:18480217..18480239,-!p3@SATB1!1.08!11.06!SATB1;;chr17:37934188..37934202,-!p8@IKZF3!1.07!10.79!IKZF3;;chr12:56415287..56415300,+!p5@IKZF4!1.07!10.66!IKZF4;;chr7:77428066..77428132,+!p2@PHTF2!1.06!68.15!PHTF2;;chr1:23857698..23857733,-!p1@E2F2!1.06!19.51!E2F2;;chr11:47236584..47236679,+!p1@DDB2!1.04!109.38!DDB2;;chr10:8095593..8095625,+!p3@GATA3!1.04!11.71!GATA3;;chr8:60031619..60031676,-!p1@TOX!1.01!20.16!TOX;;chr2:97202991..97203043,+!p3@ARID5A!1.01!9.23!ARID5A;;chr17:38020516..38020544,-!p5@IKZF3!1.00!8.97!IKZF3;;chr4:185395633..185395651,-!p2@IRF2!0.98!13.79!IRF2;;chr17:1959369..1959388,+!p2@HIC1!0.97!22.76!HIC1;;chr10:104154246..104154347,+!p3@NFKB2!0.96!50.98!NFKB2;;chr14:75988851..75988862,+!p3@BATF!0.96!8.19!BATF;;chr16:88752861..88752884,-!p2@SNAI3!0.96!8.06!SNAI3;;chr5:131826457..131826514,-!p1@IRF1!0.95!322.68!IRF1;;chr4:57522598..57522664,-!p3@HOPX!0.94!7.80!HOPX;;chr9:20621927..20621996,-!p3@MLLT3!0.92!12.49!MLLT3;;chr2:242556880..242556899,-!p5@THAP4!0.92!7.28!THAP4;;chr3:48282587..48282603,+!p1@ZNF589!0.90!32.12!ZNF589;;chr21:36421535..36421610,-!p2@RUNX1!0.90!25.88!RUNX1;;chr6:106546786..106546802,+!p6@PRDM1!0.90!7.02!PRDM1;;chr14:99737850..99737852,-!p3@BCL11B!0.90!7.02!BCL11B;;chr11:128392085..128392232,-!p1@ETS1!0.89!240.09!ETS1;;chr6:106546834..106546850,+!p4@PRDM1!0.89!6.76!PRDM1;;chr6:106547079..106547114,+!p9@PRDM1!0.88!6.63!PRDM1;;chr7:137620684..137620711,-!p4@CREB3L2!0.88!6.63!CREB3L2;;chr17:56565257..56565283,-!p2@HSF5!0.88!6.63!HSF5;;chr1:25291475..25291511,-!p2@RUNX3!0.88!6.50!RUNX3;;chr10:8097321..8097348,+!p4@GATA3!0.88!6.50!GATA3;;chr11:128563948..128564003,+!p1@FLI1!0.87!81.81!FLI1;;chr14:99738059..99738086,-!p2@BCL11B!0.87!6.37!BCL11B;;chr21:36421147..36421193,-!p10@RUNX1!0.87!6.37!RUNX1;;chr7:50343864..50343888,+!p7@IKZF1!0.87!6.37!IKZF1;;chr11:111249993..111250006,-!p1@POU2AF1!0.86!6.24!POU2AF1;;chr1:92949331..92949377,-!p2@GFI1!0.86!6.24!GFI1;;chr9:20622444..20622468,-!p2@MLLT3!0.85!20.94!MLLT3;;chr6:106546731..106546755,+!p5@PRDM1!0.85!6.11!PRDM1;;chr10:35484804..35484902,+!p2@CREM!0.84!24.19!CREM;;chr19:42636586..42636607,-!p1@POU2F2!0.84!17.30!POU2F2;;chr2:214015343..214015366,-!p3@IKZF2!0.84!5.98!IKZF2;;chr11:67007548..67007610,+!p3@KDM2A!0.83!45.65!KDM2A;;chr6:106534192..106534224,+!p1@PRDM1!0.82!16.78!PRDM1;;chr6:45390269..45390298,+!p5@RUNX2!0.82!9.62!RUNX2;;chr4:185395590..185395627,-!p3@IRF2!0.82!7.02!IRF2;;chrY:2803415..2803468,+!p1@ZFY!0.81!5.46!ZFY;;chr1:158978768..158978800,+!p8@IFI16!0.81!5.46!IFI16;;chr10:35484090..35484104,+!p6@CREM!0.81!5.46!CREM;;chr2:238600933..238600985,+!p3@LRRFIP1!0.80!31.21!LRRFIP1;;chr4:81104895..81104920,+!p2@PRDM8!0.79!7.93!PRDM8;;chr2:242556900..242556916,-!p6@THAP4!0.79!5.20!THAP4;;chr13:41240717..41240735,-!p2@FOXO1!0.78!37.72!FOXO1;;chr11:128392273..128392308,-!p2@ETS1!0.78!23.02!ETS1;;chr17:46621146..46621180,-!p10@HOXB2!0.78!5.07!HOXB2;;chr15:31619326..31619390,+!p2@KLF13!0.77!61.65!KLF13;;chr15:74833584..74833626,+!p1@ARID3B!0.77!12.10!ARID3B;;chr11:615570..615721,-!p2@IRF7!0.77!10.14!IRF7;;chr7:128577972..128578047,+!p1@IRF5!0.77!8.06!IRF5;;chr7:50344144..50344157,+!p6@IKZF1!0.77!4.94!IKZF1;;chr16:89787937..89787971,+!p1@ZNF276!0.76!13.40!ZNF276;;chr4:57522166..57522260,-!p2@HOPX!0.76!5.59!HOPX;;chr2:231084659..231084721,-!p1@SP110!0.75!119.00!SP110;;chr7:139762641..139762768,-!p1@PARP12!0.75!70.62!PARP12;;chr6:15249128..15249177,+!p4@JARID2!0.75!8.71!JARID2;;chr4:57522674..57522699,-!p5@HOPX!0.75!4.68!HOPX;;chr2:97202480..97202499,+!p1@ARID5A!0.74!50.46!ARID5A;;chr2:148778973..148779035,+!p3@MBD5!0.74!12.62!MBD5;;chr7:21467802..21467840,+!p3@SP4!0.73!9.75!SP4;;chr14:24630902..24630948,+!p2@IRF9!0.73!5.46!IRF9;;chr16:79634464..79634493,-!p5@MAF!0.73!4.42!MAF;;chr13:41240737..41240787,-!p1@FOXO1!0.72!56.71!FOXO1;;chr10:35416142..35416169,+!p3@CREM!0.72!12.23!CREM;;chr6:45390300..45390335,+!p4@RUNX2!0.72!6.89!RUNX2;;chr10:8100691..8100732,+!p5@GATA3!0.72!4.29!GATA3;;chr17:37934268..37934277,-!p10@IKZF3!0.72!4.29!IKZF3;;chr17:40440481..40440550,+!p1@STAT5A!0.71!33.56!STAT5A;;chr3:71007344..71007348,-!p6@FOXP1!0.71!18.21!FOXP1;;chr12:46123273..46123329,+!p3@ARID2!0.71!7.54!ARID2;;chr10:3824332..3824425,-!p4@KLF6!0.71!7.15!KLF6;;chr1:44679370..44679422,+!p3@DMAP1!0.71!5.72!DMAP1;;chr19:4153613..4153652,+!p1@CREB3L3!0.71!4.16!CREB3L3;;chr2:214013461..214013517,-!p6@IKZF2!0.71!4.16!IKZF2;;chr2:231090344..231090361,-!p3@SP110!0.71!4.16!SP110;;chr1:158979686..158979745,+!p1@IFI16!0.70!150.61!IFI16;;chr14:90085458..90085557,-!p1@FOXN3!0.70!47.73!FOXN3;;chr7:148982396..148982408,+!p4@ZNF783!0.70!4.03!ZNF783;;chr20:46130672..46130686,+!p2@NCOA3!0.69!19.51!NCOA3;;chr11:113930425..113930471,+!p1@ZBTB16!0.69!5.98!ZBTB16;;chr2:74741569..74741620,+!p1@TLX2!0.69!3.90!TLX2;;chr3:18480173..18480189,-!p6@SATB1!0.69!3.90!SATB1;;chr6:45389791..45389832,+!p3@RUNX2!0.68!10.53!RUNX2;;chr3:141121847..141121868,+!p5@ZBTB38!0.68!6.11!ZBTB38;;chr6:36355513..36355578,-!p2@ETV7!0.68!4.94!ETV7;;chr17:38020481..38020506,-!p7@IKZF3!0.68!3.77!IKZF3;;chrY:21906761..21906810,-!p2@KDM5D!0.68!3.77!KDM5D;;chr5:321810..321877,+!p1@AHRR!0.67!13.01!AHRR;;chr6:106534230..106534254,+!p2@PRDM1!0.67!10.14!PRDM1;;chr14:64970670..64970712,-!p3@ZBTB25!0.67!8.71!ZBTB25;;chr1:151319654..151319698,-!p2@RFX5!0.67!8.71!RFX5;;chr9:20622478..20622525,-!p1@MLLT3!0.66!32.38!MLLT3;;chr4:185395191..185395226,-!p4@IRF2!0.66!5.20!IRF2;;chr2:178128250..178128293,-!p6@NFE2L2!0.65!9.88!NFE2L2;;chr17:46621101..46621143,-!p7@HOXB2!0.65!4.94!HOXB2;;chr12:72056800..72056834,+!p1@THAP2!0.65!4.94!THAP2;;chr11:47237922..47237964,+!p4@DDB2!0.65!4.16!DDB2;;chr4:81104865..81104886,+!p6@PRDM8!0.65!3.77!PRDM8;;chr15:60884747..60884774,-!p3@RORA!0.64!9.36!RORA;;chr1:154975110..154975149,+!p2@ZBTB7B!0.64!7.93!ZBTB7B;;chr2:214015111..214015179,-!p1@IKZF2!0.64!6.50!IKZF2;;chr17:36861735..36861755,+!p4@MLLT6!0.64!6.24!MLLT6;;chr17:46621311..46621332,-!p8@HOXB2!0.64!4.55!HOXB2;;chr21:36421347..36421380,-!p8@RUNX1!0.64!3.38!RUNX1;;chr19:52674696..52674758,-!p1@ZNF836!0.63!10.92!ZNF836;;chr20:44600199..44600219,-!p3@ZNF335!0.63!4.68!ZNF335;;chr9:117150303..117150312,-!p3@AKNA!0.63!4.29!AKNA;;chr4:57522513..57522548,-!p4@HOPX!0.63!3.25!HOPX;;chr17:41738709..41738733,-!p3@MEOX1!0.63!3.25!MEOX1;;chr19:16435705..16435726,+!p3@KLF2!0.63!3.25!KLF2;;chr16:68118689..68118733,+!p3@NFATC3!0.62!9.10!NFATC3;;chr19:45972701..45972774,+!p2@FOSB!0.62!4.55!FOSB;;chr17:41738750..41738764,-!p4@MEOX1!0.62!3.12!MEOX1;;chr10:104154415..104154434,+!p5@NFKB2!0.62!3.12!NFKB2;;chr11:128331703..128331717,-!p8@ETS1!0.62!3.12!ETS1;;chr5:176738887..176738934,-!p1@MXD3!0.61!24.58!MXD3;;chr10:104155480..104155534,+!p2@NFKB2!0.61!23.54!NFKB2;;chr6:91006518..91006570,-!p1@BACH2!0.61!7.93!BACH2;;chr3:71179699..71179744,-!p2@FOXP1!0.60!26.66!FOXP1;;chr7:64838786..64838809,+!p2@ZNF92!0.60!20.42!ZNF92;;chr6:20403916..20403965,+!p3@E2F3!0.60!15.74!E2F3;;chr3:18466787..18466839,-!p1@SATB1!0.60!15.74!SATB1;;chr7:21467674..21467727,+!p1@SP4!0.60!14.05!SP4;;chr6:36355431..36355466,-!p1@ETV7!0.60!2.99!ETV7;;chr17:37934392..37934398,-!p11@IKZF3!0.60!2.99!IKZF3;;chr11:615942..615957,-!p1@IRF7!0.59!33.04!IRF7;;chr7:99156145..99156207,+!p5@ZNF655!0.59!11.45!ZNF655;;chr9:3525727..3525828,-!p2@RFX3!0.59!8.58!RFX3;;chr11:128392309..128392350,-!p3@ETS1!0.5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| |expression_enrichment_score=chrX:49121165..49121179,-!p1@FOXP3!2.60!397.72!FOXP3;;chr10:8096631..8096660,+!p1@GATA3!1.89!91.43!GATA3;;chr14:75988831..75988847,+!p2@BATF!1.88!74.78!BATF;;chr17:37934204..37934241,-!p3@IKZF3!1.84!68.93!IKZF3;;chr16:79634624..79634642,-!p1@MAF!1.83!248.02!MAF;;chr10:8096772..8096787,+!p2@GATA3!1.83!78.30!GATA3;;chr17:37934365..37934387,-!p2@IKZF3!1.82!65.68!IKZF3;;chr7:50343634..50343717,+!p2@IKZF1!1.81!63.86!IKZF1;;chr16:79634595..79634620,-!p2@MAF!1.78!105.22!MAF;;chr14:75988771..75988826,+!p1@BATF!1.77!75.30!BATF;;chr2:231090433..231090469,+!p1@SP140!1.65!43.18!SP140;;chr1:25256756..25256774,-!p1@RUNX3!1.53!59.83!RUNX3;;chr19:19779619..19779670,+!p1@ZNF101!1.51!86.10!ZNF101;;chr20:50159198..50159299,-!p1@NFATC2!1.47!40.71!NFATC2;;chr20:56195474..56195506,-!p1@ZBP1!1.47!28.35!ZBP1;;chr3:18486354..18486377,-!p2@SATB1!1.46!34.86!SATB1;;chrY:21906594..21906622,-!p1@KDM5D!1.44!26.79!KDM5D;;chr10:35484053..35484076,+!p1@CREM!1.42!61.65!CREM;;chr15:60884706..60884743,-!p1@RORA!1.41!122.65!RORA;;chr9:117150254..117150271,-!p1@AKNA!1.39!62.95!AKNA;;chr17:38020392..38020477,-!p1@IKZF3!1.39!23.41!IKZF3;;chr2:192015701..192015743,-!p1@STAT4!1.36!29.91!STAT4;;chr2:231090471..231090504,+!p2@SP140!1.36!21.85!SP140;;chr7:50343895..50343936,+!p5@IKZF1!1.35!21.33!IKZF1;;chr6:391743..391759,+!p1@IRF4!1.33!20.29!IRF4;;chr19:19729477..19729542,-!p1@PBX4!1.32!41.75!PBX4;;chr2:192015750..192015793,-!p2@STAT4!1.31!25.88!STAT4;;chr17:37934280..37934299,-!p6@IKZF3!1.30!18.73!IKZF3;;chr7:50344251..50344288,+!p3@IKZF1!1.29!18.47!IKZF1;;chr19:16435625..16435682,+!p1@KLF2!1.28!564.59!KLF2;;chr12:56415246..56415286,+!p2@IKZF4!1.28!18.08!IKZF4;;chr7:50348268..50348366,+!p4@IKZF1!1.28!18.08!IKZF1;;chr20:56195525..56195556,-!p2@ZBP1!1.28!18.08!ZBP1;;chr19:36204309..36204335,+!p1@ZBTB32!1.27!17.56!ZBTB32;;chr1:92951607..92951661,-!p1@GFI1!1.27!17.43!GFI1;;chr6:106546808..106546833,+!p3@PRDM1!1.26!21.46!PRDM1;;chr16:88752889..88752921,-!p1@SNAI3!1.26!20.16!SNAI3;;chr3:12330560..12330579,+!p1@PPARG!1.25!19.25!PPARG;;chr14:99738138..99738163,-!p1@BCL11B!1.24!16.52!BCL11B;;chr7:50344289..50344323,+!p1@IKZF1!1.24!16.26!IKZF1;;chr19:19779686..19779697,+!p3@ZNF101!1.22!18.21!ZNF101;;chr16:79634581..79634592,-!p4@MAF!1.22!15.74!MAF;;chr16:68119324..68119364,+!p1@NFATC3!1.20!65.03!NFATC3;;chr17:45810594..45810608,+!p1@TBX21!1.18!14.18!TBX21;;chr17:38020557..38020572,-!p4@IKZF3!1.14!12.75!IKZF3;;chr3:63953435..63953499,+!p1@ATXN7!1.13!12.36!ATXN7;;chr3:141105705..141105770,+!p4@ZBTB38!1.12!14.70!ZBTB38;;chr7:137620650..137620677,-!p3@CREB3L2!1.11!11.97!CREB3L2;;chr16:79633894..79633954,-!p3@MAF!1.10!22.37!MAF;;chr13:41593425..41593480,-!p1@ELF1!1.09!72.31!ELF1;;chr3:71355163..71355209,-!p5@FOXP1!1.08!15.22!FOXP1;;chr3:18480217..18480239,-!p3@SATB1!1.08!11.06!SATB1;;chr17:37934188..37934202,-!p8@IKZF3!1.07!10.79!IKZF3;;chr12:56415287..56415300,+!p5@IKZF4!1.07!10.66!IKZF4;;chr7:77428066..77428132,+!p2@PHTF2!1.06!68.15!PHTF2;;chr1:23857698..23857733,-!p1@E2F2!1.06!19.51!E2F2;;chr11:47236584..47236679,+!p1@DDB2!1.04!109.38!DDB2;;chr10:8095593..8095625,+!p3@GATA3!1.04!11.71!GATA3;;chr8:60031619..60031676,-!p1@TOX!1.01!20.16!TOX;;chr2:97202991..97203043,+!p3@ARID5A!1.01!9.23!ARID5A;;chr17:38020516..38020544,-!p5@IKZF3!1.00!8.97!IKZF3;;chr4:185395633..185395651,-!p2@IRF2!0.98!13.79!IRF2;;chr17:1959369..1959388,+!p2@HIC1!0.97!22.76!HIC1;;chr10:104154246..104154347,+!p3@NFKB2!0.96!50.98!NFKB2;;chr14:75988851..75988862,+!p3@BATF!0.96!8.19!BATF;;chr16:88752861..88752884,-!p2@SNAI3!0.96!8.06!SNAI3;;chr5:131826457..131826514,-!p1@IRF1!0.95!322.68!IRF1;;chr4:57522598..57522664,-!p3@HOPX!0.94!7.80!HOPX;;chr9:20621927..20621996,-!p3@MLLT3!0.92!12.49!MLLT3;;chr2:242556880..242556899,-!p5@THAP4!0.92!7.28!THAP4;;chr3:48282587..48282603,+!p1@ZNF589!0.90!32.12!ZNF589;;chr21:36421535..36421610,-!p2@RUNX1!0.90!25.88!RUNX1;;chr6:106546786..106546802,+!p6@PRDM1!0.90!7.02!PRDM1;;chr14:99737850..99737852,-!p3@BCL11B!0.90!7.02!BCL11B;;chr11:128392085..128392232,-!p1@ETS1!0.89!240.09!ETS1;;chr6:106546834..106546850,+!p4@PRDM1!0.89!6.76!PRDM1;;chr6:106547079..106547114,+!p9@PRDM1!0.88!6.63!PRDM1;;chr7:137620684..137620711,-!p4@CREB3L2!0.88!6.63!CREB3L2;;chr17:56565257..56565283,-!p2@HSF5!0.88!6.63!HSF5;;chr1:25291475..25291511,-!p2@RUNX3!0.88!6.50!RUNX3;;chr10:8097321..8097348,+!p4@GATA3!0.88!6.50!GATA3;;chr11:128563948..128564003,+!p1@FLI1!0.87!81.81!FLI1;;chr14:99738059..99738086,-!p2@BCL11B!0.87!6.37!BCL11B;;chr21:36421147..36421193,-!p10@RUNX1!0.87!6.37!RUNX1;;chr7:50343864..50343888,+!p7@IKZF1!0.87!6.37!IKZF1;;chr11:111249993..111250006,-!p1@POU2AF1!0.86!6.24!POU2AF1;;chr1:92949331..92949377,-!p2@GFI1!0.86!6.24!GFI1;;chr9:20622444..20622468,-!p2@MLLT3!0.85!20.94!MLLT3;;chr6:106546731..106546755,+!p5@PRDM1!0.85!6.11!PRDM1;;chr10:35484804..35484902,+!p2@CREM!0.84!24.19!CREM;;chr19:42636586..42636607,-!p1@POU2F2!0.84!17.30!POU2F2;;chr2:214015343..214015366,-!p3@IKZF2!0.84!5.98!IKZF2;;chr11:67007548..67007610,+!p3@KDM2A!0.83!45.65!KDM2A;;chr6:106534192..106534224,+!p1@PRDM1!0.82!16.78!PRDM1;;chr6:45390269..45390298,+!p5@RUNX2!0.82!9.62!RUNX2;;chr4:185395590..185395627,-!p3@IRF2!0.82!7.02!IRF2;;chrY:2803415..2803468,+!p1@ZFY!0.81!5.46!ZFY;;chr1:158978768..158978800,+!p8@IFI16!0.81!5.46!IFI16;;chr10:35484090..35484104,+!p6@CREM!0.81!5.46!CREM;;chr2:238600933..238600985,+!p3@LRRFIP1!0.80!31.21!LRRFIP1;;chr4:81104895..81104920,+!p2@PRDM8!0.79!7.93!PRDM8;;chr2:242556900..242556916,-!p6@THAP4!0.79!5.20!THAP4;;chr13:41240717..41240735,-!p2@FOXO1!0.78!37.72!FOXO1;;chr11:128392273..128392308,-!p2@ETS1!0.78!23.02!ETS1;;chr17:46621146..46621180,-!p10@HOXB2!0.78!5.07!HOXB2;;chr15:31619326..31619390,+!p2@KLF13!0.77!61.65!KLF13;;chr15:74833584..74833626,+!p1@ARID3B!0.77!12.10!ARID3B;;chr11:615570..615721,-!p2@IRF7!0.77!10.14!IRF7;;chr7:128577972..128578047,+!p1@IRF5!0.77!8.06!IRF5;;chr7:50344144..50344157,+!p6@IKZF1!0.77!4.94!IKZF1;;chr16:89787937..89787971,+!p1@ZNF276!0.76!13.40!ZNF276;;chr4:57522166..57522260,-!p2@HOPX!0.76!5.59!HOPX;;chr2:231084659..231084721,-!p1@SP110!0.75!119.00!SP110;;chr7:139762641..139762768,-!p1@PARP12!0.75!70.62!PARP12;;chr6:15249128..15249177,+!p4@JARID2!0.75!8.71!JARID2;;chr4:57522674..57522699,-!p5@HOPX!0.75!4.68!HOPX;;chr2:97202480..97202499,+!p1@ARID5A!0.74!50.46!ARID5A;;chr2:148778973..148779035,+!p3@MBD5!0.74!12.62!MBD5;;chr7:21467802..21467840,+!p3@SP4!0.73!9.75!SP4;;chr14:24630902..24630948,+!p2@IRF9!0.73!5.46!IRF9;;chr16:79634464..79634493,-!p5@MAF!0.73!4.42!MAF;;chr13:41240737..41240787,-!p1@FOXO1!0.72!56.71!FOXO1;;chr10:35416142..35416169,+!p3@CREM!0.72!12.23!CREM;;chr6:45390300..45390335,+!p4@RUNX2!0.72!6.89!RUNX2;;chr10:8100691..8100732,+!p5@GATA3!0.72!4.29!GATA3;;chr17:37934268..37934277,-!p10@IKZF3!0.72!4.29!IKZF3;;chr17:40440481..40440550,+!p1@STAT5A!0.71!33.56!STAT5A;;chr3:71007344..71007348,-!p6@FOXP1!0.71!18.21!FOXP1;;chr12:46123273..46123329,+!p3@ARID2!0.71!7.54!ARID2;;chr10:3824332..3824425,-!p4@KLF6!0.71!7.15!KLF6;;chr1:44679370..44679422,+!p3@DMAP1!0.71!5.72!DMAP1;;chr19:4153613..4153652,+!p1@CREB3L3!0.71!4.16!CREB3L3;;chr2:214013461..214013517,-!p6@IKZF2!0.71!4.16!IKZF2;;chr2:231090344..231090361,-!p3@SP110!0.71!4.16!SP110;;chr1:158979686..158979745,+!p1@IFI16!0.70!150.61!IFI16;;chr14:90085458..90085557,-!p1@FOXN3!0.70!47.73!FOXN3;;chr7:148982396..148982408,+!p4@ZNF783!0.70!4.03!ZNF783;;chr20:46130672..46130686,+!p2@NCOA3!0.69!19.51!NCOA3;;chr11:113930425..113930471,+!p1@ZBTB16!0.69!5.98!ZBTB16;;chr2:74741569..74741620,+!p1@TLX2!0.69!3.90!TLX2;;chr3:18480173..18480189,-!p6@SATB1!0.69!3.90!SATB1;;chr6:45389791..45389832,+!p3@RUNX2!0.68!10.53!RUNX2;;chr3:141121847..141121868,+!p5@ZBTB38!0.68!6.11!ZBTB38;;chr6:36355513..36355578,-!p2@ETV7!0.68!4.94!ETV7;;chr17:38020481..38020506,-!p7@IKZF3!0.68!3.77!IKZF3;;chrY:21906761..21906810,-!p2@KDM5D!0.68!3.77!KDM5D;;chr5:321810..321877,+!p1@AHRR!0.67!13.01!AHRR;;chr6:106534230..106534254,+!p2@PRDM1!0.67!10.14!PRDM1;;chr14:64970670..64970712,-!p3@ZBTB25!0.67!8.71!ZBTB25;;chr1:151319654..151319698,-!p2@RFX5!0.67!8.71!RFX5;;chr9:20622478..20622525,-!p1@MLLT3!0.66!32.38!MLLT3;;chr4:185395191..185395226,-!p4@IRF2!0.66!5.20!IRF2;;chr2:178128250..178128293,-!p6@NFE2L2!0.65!9.88!NFE2L2;;chr17:46621101..46621143,-!p7@HOXB2!0.65!4.94!HOXB2;;chr12:72056800..72056834,+!p1@THAP2!0.65!4.94!THAP2;;chr11:47237922..47237964,+!p4@DDB2!0.65!4.16!DDB2;;chr4:81104865..81104886,+!p6@PRDM8!0.65!3.77!PRDM8;;chr15:60884747..60884774,-!p3@RORA!0.64!9.36!RORA;;chr1:154975110..154975149,+!p2@ZBTB7B!0.64!7.93!ZBTB7B;;chr2:214015111..214015179,-!p1@IKZF2!0.64!6.50!IKZF2;;chr17:36861735..36861755,+!p4@MLLT6!0.64!6.24!MLLT6;;chr17:46621311..46621332,-!p8@HOXB2!0.64!4.55!HOXB2;;chr21:36421347..36421380,-!p8@RUNX1!0.64!3.38!RUNX1;;chr19:52674696..52674758,-!p1@ZNF836!0.63!10.92!ZNF836;;chr20:44600199..44600219,-!p3@ZNF335!0.63!4.68!ZNF335;;chr9:117150303..117150312,-!p3@AKNA!0.63!4.29!AKNA;;chr4:57522513..57522548,-!p4@HOPX!0.63!3.25!HOPX;;chr17:41738709..41738733,-!p3@MEOX1!0.63!3.25!MEOX1;;chr19:16435705..16435726,+!p3@KLF2!0.63!3.25!KLF2;;chr16:68118689..68118733,+!p3@NFATC3!0.62!9.10!NFATC3;;chr19:45972701..45972774,+!p2@FOSB!0.62!4.55!FOSB;;chr17:41738750..41738764,-!p4@MEOX1!0.62!3.12!MEOX1;;chr10:104154415..104154434,+!p5@NFKB2!0.62!3.12!NFKB2;;chr11:128331703..128331717,-!p8@ETS1!0.62!3.12!ETS1;;chr5:176738887..176738934,-!p1@MXD3!0.61!24.58!MXD3;;chr10:104155480..104155534,+!p2@NFKB2!0.61!23.54!NFKB2;;chr6:91006518..91006570,-!p1@BACH2!0.61!7.93!BACH2;;chr3:71179699..71179744,-!p2@FOXP1!0.60!26.66!FOXP1;;chr7:64838786..64838809,+!p2@ZNF92!0.60!20.42!ZNF92;;chr6:20403916..20403965,+!p3@E2F3!0.60!15.74!E2F3;;chr3:18466787..18466839,-!p1@SATB1!0.60!15.74!SATB1;;chr7:21467674..21467727,+!p1@SP4!0.60!14.05!SP4;;chr6:36355431..36355466,-!p1@ETV7!0.60!2.99!ETV7;;chr17:37934392..37934398,-!p11@IKZF3!0.60!2.99!IKZF3;;chr11:615942..615957,-!p1@IRF7!0.59!33.04!IRF7;;chr7:99156145..99156207,+!p5@ZNF655!0.59!11.45!ZNF655;;chr9:3525727..3525828,-!p2@RFX3!0.59!8.58!RFX3;;chr11:128392309..128392350,-!p3@ETS1!0.5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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000084;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000542;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000624;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000789;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000893;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
Line 40: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252bCD25%252bCD45RA-%2520memory%2520regulatory%2520T%2520cells%2520expanded%252c%2520donor3.CNhs13812.11920-125H3.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252bCD25%252bCD45RA-%2520memory%2520regulatory%2520T%2520cells%2520expanded%252c%2520donor3.CNhs13812.11920-125H3.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252bCD25%252bCD45RA-%2520memory%2520regulatory%2520T%2520cells%2520expanded%252c%2520donor3.CNhs13812.11920-125H3.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD4%252bCD25%252bCD45RA-%2520memory%2520regulatory%2520T%2520cells%2520expanded%252c%2520donor3.CNhs13812.11920-125H3.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD4%252bCD25%252bCD45RA-%2520memory%2520regulatory%2520T%2520cells%2520expanded%252c%2520donor3.CNhs13812.11920-125H3.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11920-125H3 | |id=FF:11920-125H3 | ||
|is_a=EFO:0002091;;FF:0000002;;FF:0000210 | |is_a=EFO:0002091;;FF:0000002;;FF:0000210 | ||
Line 45: | Line 51: | ||
|library_id=CNhs13812 | |library_id=CNhs13812 | ||
|library_id_phase_based=2:CNhs13812 | |library_id_phase_based=2:CNhs13812 | ||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11920 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11920 | |||
|name=CD4+CD25+CD45RA- memory regulatory T cells expanded, donor3 | |name=CD4+CD25+CD45RA- memory regulatory T cells expanded, donor3 | ||
|namespace= | |namespace= | ||
Line 52: | Line 62: | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq= | |profile_srnaseq= | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| ||
Line 89: | Line 100: | ||
|top_motifs=ZBTB16:2.648765926;CDX1,2,4:2.43853293192;ELF1,2,4:2.19550301786;PAX3,7:1.94248506727;NKX6-1,2:1.87360274927;RUNX1..3:1.8668992977;RORA:1.77381426686;FOXP1:1.76486935923;TLX2:1.76001749268;PITX1..3:1.71641916125;PAX4:1.60877059883;IKZF2:1.4236032448;ETS1,2:1.38723592196;IRF1,2:1.38216549507;FOX{F1,F2,J1}:1.27493328159;POU2F1..3:1.23609723979;BPTF:1.20747822078;AIRE:1.19315739663;NKX3-1:1.16480235588;SPI1:1.15838181867;PDX1:1.12860971994;DMAP1_NCOR{1,2}_SMARC:0.984220096909;GATA6:0.897978620632;POU1F1:0.880024491481;TOPORS:0.87676103384;HMX1:0.779149168996;STAT2,4,6:0.775366749153;ELK1,4_GABP{A,B1}:0.770697482229;CRX:0.769424678164;FOX{D1,D2}:0.742713378514;CREB1:0.738516342072;FOXO1,3,4:0.694629936223;ZNF384:0.654811273283;SPIB:0.651477830993;E2F1..5:0.644102492201;BREu{core}:0.624644998771;STAT1,3:0.616290180613;PBX1:0.581931166652;NFKB1_REL_RELA:0.580992581495;ATF5_CREB3:0.559113142704;IRF7:0.556841952171;NANOG{mouse}:0.524080269105;ZEB1:0.467995490084;STAT5{A,B}:0.457479792058;YY1:0.452218438625;LMO2:0.428363878389;RFX2..5_RFXANK_RFXAP:0.397440228241;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.39237032999;TGIF1:0.371833678702;MYOD1:0.357123156099;SNAI1..3:0.346963422676;FOX{I1,J2}:0.344220334715;NFY{A,B,C}:0.307470196858;FOXQ1:0.279566130344;PAX2:0.272014946276;NKX2-2,8:0.261474625523;PAX8:0.244844402539;OCT4_SOX2{dimer}:0.235636775495;HES1:0.23523370363;SOX5:0.215827026302;HOX{A6,A7,B6,B7}:0.209401763301;SPZ1:0.19042046223;FOXN1:0.187154419596;MYB:0.15732880082;SMAD1..7,9:0.150275524975;ATF4:0.143284982152;EVI1:0.136188738616;SREBF1,2:0.118141773417;JUN:0.106373877949;DBP:0.104879166463;FOXD3:0.0916832600276;FOXM1:0.0889919139023;NR5A1,2:0.033123400876;NRF1:0.0324878142278;GFI1:0.0128787982164;ONECUT1,2:0.000815693506059;FOXP3:-0.0362972611425;LEF1_TCF7_TCF7L1,2:-0.0939124768552;CUX2:-0.129082403439;TAL1_TCF{3,4,12}:-0.131903266739;EP300:-0.167365949159;HNF4A_NR2F1,2:-0.173000420228;NFATC1..3:-0.175695411424;TP53:-0.202318676941;ZNF143:-0.230540159146;ZNF148:-0.23216906041;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.266789525666;FOXA2:-0.267089305478;NFE2L1:-0.26867257018;NFIL3:-0.319093059145;T:-0.337453740744;ATF2:-0.339743879967;GLI1..3:-0.343207040714;POU3F1..4:-0.3503907225;HAND1,2:-0.358166838359;RXRA_VDR{dimer}:-0.363573732366;NFE2:-0.370908909409;AR:-0.385883251585;SRF:-0.400649480194;HIF1A:-0.411395800364;PRRX1,2:-0.437369354923;TFDP1:-0.445382747361;AHR_ARNT_ARNT2:-0.452289085225;ALX1:-0.461633004511;MYFfamily:-0.46818895818;CEBPA,B_DDIT3:-0.471515942193;FOS_FOS{B,L1}_JUN{B,D}:-0.472868076373;CDC5L:-0.479363717113;SOX2:-0.48562774746;ZNF423:-0.490162679999;RREB1:-0.491792713738;NR6A1:-0.498320575438;BACH2:-0.499546418841;NKX2-1,4:-0.511951337643;NFIX:-0.52491923328;HNF1A:-0.541212523253;NR3C1:-0.544782893153;ATF6:-0.549581043881;NHLH1,2:-0.555908257834;GCM1,2:-0.559040898596;UFEwm:-0.572674812495;HOXA9_MEIS1:-0.609984685907;TFCP2:-0.639862037714;ARID5B:-0.64219850746;ALX4:-0.65942103458;RFX1:-0.674178052266;PAX6:-0.678832809635;NFE2L2:-0.67960140261;MAFB:-0.683076574229;MYBL2:-0.684598058444;SOX{8,9,10}:-0.701066268743;PPARG:-0.720270377108;NR1H4:-0.733819201797;HMGA1,2:-0.737274672236;TFAP4:-0.738126273018;FOSL2:-0.743233957798;TEF:-0.75238550141;REST:-0.779502831006;VSX1,2:-0.803327701243;NKX2-3_NKX2-5:-0.829945320589;XCPE1{core}:-0.851471219631;MED-1{core}:-0.864817260454;HLF:-0.890582171057;ESR1:-0.90883974077;POU5F1:-0.957636048004;ZNF238:-1.00825196921;PRDM1:-1.01086881679;GATA4:-1.02108215373;GFI1B:-1.02511432545;EGR1..3:-1.03390774319;ADNP_IRX_SIX_ZHX:-1.05336282573;ZFP161:-1.08084068978;PAX5:-1.08110126425;MEF2{A,B,C,D}:-1.11988918007;HSF1,2:-1.12237864685;HBP1_HMGB_SSRP1_UBTF:-1.12269037959;ZBTB6:-1.12309707355;bHLH_family:-1.12828150076;MAZ:-1.15504332125;NANOG:-1.17178345675;FOXL1:-1.20788651478;KLF4:-1.22398533547;ESRRA:-1.24521673477;HOX{A5,B5}:-1.25862925061;MTE{core}:-1.27335929668;TFAP2B:-1.2757274588;LHX3,4:-1.29267175389;POU6F1:-1.30935427604;TBP:-1.32497790738;EBF1:-1.32749303074;MTF1:-1.33165117635;MZF1:-1.35090717206;HIC1:-1.3634149322;TFAP2{A,C}:-1.47021493966;GTF2I:-1.47045701904;TBX4,5:-1.47544429602;PATZ1:-1.53082832665;GZF1:-1.53329738673;GTF2A1,2:-1.5358806787;ZIC1..3:-1.54844358784;SP1:-1.58070796266;RBPJ:-1.58654893974;SOX17:-1.63246011052;TEAD1:-1.70193893587;PAX1,9:-1.71094063727;HOX{A4,D4}:-1.72587347229;EN1,2:-1.7489594098;TLX1..3_NFIC{dimer}:-1.80279802964;NKX3-2:-1.82462217381;RXR{A,B,G}:-1.87169601266;IKZF1:-2.09815495534;XBP1:-2.56516085388 | |top_motifs=ZBTB16:2.648765926;CDX1,2,4:2.43853293192;ELF1,2,4:2.19550301786;PAX3,7:1.94248506727;NKX6-1,2:1.87360274927;RUNX1..3:1.8668992977;RORA:1.77381426686;FOXP1:1.76486935923;TLX2:1.76001749268;PITX1..3:1.71641916125;PAX4:1.60877059883;IKZF2:1.4236032448;ETS1,2:1.38723592196;IRF1,2:1.38216549507;FOX{F1,F2,J1}:1.27493328159;POU2F1..3:1.23609723979;BPTF:1.20747822078;AIRE:1.19315739663;NKX3-1:1.16480235588;SPI1:1.15838181867;PDX1:1.12860971994;DMAP1_NCOR{1,2}_SMARC:0.984220096909;GATA6:0.897978620632;POU1F1:0.880024491481;TOPORS:0.87676103384;HMX1:0.779149168996;STAT2,4,6:0.775366749153;ELK1,4_GABP{A,B1}:0.770697482229;CRX:0.769424678164;FOX{D1,D2}:0.742713378514;CREB1:0.738516342072;FOXO1,3,4:0.694629936223;ZNF384:0.654811273283;SPIB:0.651477830993;E2F1..5:0.644102492201;BREu{core}:0.624644998771;STAT1,3:0.616290180613;PBX1:0.581931166652;NFKB1_REL_RELA:0.580992581495;ATF5_CREB3:0.559113142704;IRF7:0.556841952171;NANOG{mouse}:0.524080269105;ZEB1:0.467995490084;STAT5{A,B}:0.457479792058;YY1:0.452218438625;LMO2:0.428363878389;RFX2..5_RFXANK_RFXAP:0.397440228241;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.39237032999;TGIF1:0.371833678702;MYOD1:0.357123156099;SNAI1..3:0.346963422676;FOX{I1,J2}:0.344220334715;NFY{A,B,C}:0.307470196858;FOXQ1:0.279566130344;PAX2:0.272014946276;NKX2-2,8:0.261474625523;PAX8:0.244844402539;OCT4_SOX2{dimer}:0.235636775495;HES1:0.23523370363;SOX5:0.215827026302;HOX{A6,A7,B6,B7}:0.209401763301;SPZ1:0.19042046223;FOXN1:0.187154419596;MYB:0.15732880082;SMAD1..7,9:0.150275524975;ATF4:0.143284982152;EVI1:0.136188738616;SREBF1,2:0.118141773417;JUN:0.106373877949;DBP:0.104879166463;FOXD3:0.0916832600276;FOXM1:0.0889919139023;NR5A1,2:0.033123400876;NRF1:0.0324878142278;GFI1:0.0128787982164;ONECUT1,2:0.000815693506059;FOXP3:-0.0362972611425;LEF1_TCF7_TCF7L1,2:-0.0939124768552;CUX2:-0.129082403439;TAL1_TCF{3,4,12}:-0.131903266739;EP300:-0.167365949159;HNF4A_NR2F1,2:-0.173000420228;NFATC1..3:-0.175695411424;TP53:-0.202318676941;ZNF143:-0.230540159146;ZNF148:-0.23216906041;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.266789525666;FOXA2:-0.267089305478;NFE2L1:-0.26867257018;NFIL3:-0.319093059145;T:-0.337453740744;ATF2:-0.339743879967;GLI1..3:-0.343207040714;POU3F1..4:-0.3503907225;HAND1,2:-0.358166838359;RXRA_VDR{dimer}:-0.363573732366;NFE2:-0.370908909409;AR:-0.385883251585;SRF:-0.400649480194;HIF1A:-0.411395800364;PRRX1,2:-0.437369354923;TFDP1:-0.445382747361;AHR_ARNT_ARNT2:-0.452289085225;ALX1:-0.461633004511;MYFfamily:-0.46818895818;CEBPA,B_DDIT3:-0.471515942193;FOS_FOS{B,L1}_JUN{B,D}:-0.472868076373;CDC5L:-0.479363717113;SOX2:-0.48562774746;ZNF423:-0.490162679999;RREB1:-0.491792713738;NR6A1:-0.498320575438;BACH2:-0.499546418841;NKX2-1,4:-0.511951337643;NFIX:-0.52491923328;HNF1A:-0.541212523253;NR3C1:-0.544782893153;ATF6:-0.549581043881;NHLH1,2:-0.555908257834;GCM1,2:-0.559040898596;UFEwm:-0.572674812495;HOXA9_MEIS1:-0.609984685907;TFCP2:-0.639862037714;ARID5B:-0.64219850746;ALX4:-0.65942103458;RFX1:-0.674178052266;PAX6:-0.678832809635;NFE2L2:-0.67960140261;MAFB:-0.683076574229;MYBL2:-0.684598058444;SOX{8,9,10}:-0.701066268743;PPARG:-0.720270377108;NR1H4:-0.733819201797;HMGA1,2:-0.737274672236;TFAP4:-0.738126273018;FOSL2:-0.743233957798;TEF:-0.75238550141;REST:-0.779502831006;VSX1,2:-0.803327701243;NKX2-3_NKX2-5:-0.829945320589;XCPE1{core}:-0.851471219631;MED-1{core}:-0.864817260454;HLF:-0.890582171057;ESR1:-0.90883974077;POU5F1:-0.957636048004;ZNF238:-1.00825196921;PRDM1:-1.01086881679;GATA4:-1.02108215373;GFI1B:-1.02511432545;EGR1..3:-1.03390774319;ADNP_IRX_SIX_ZHX:-1.05336282573;ZFP161:-1.08084068978;PAX5:-1.08110126425;MEF2{A,B,C,D}:-1.11988918007;HSF1,2:-1.12237864685;HBP1_HMGB_SSRP1_UBTF:-1.12269037959;ZBTB6:-1.12309707355;bHLH_family:-1.12828150076;MAZ:-1.15504332125;NANOG:-1.17178345675;FOXL1:-1.20788651478;KLF4:-1.22398533547;ESRRA:-1.24521673477;HOX{A5,B5}:-1.25862925061;MTE{core}:-1.27335929668;TFAP2B:-1.2757274588;LHX3,4:-1.29267175389;POU6F1:-1.30935427604;TBP:-1.32497790738;EBF1:-1.32749303074;MTF1:-1.33165117635;MZF1:-1.35090717206;HIC1:-1.3634149322;TFAP2{A,C}:-1.47021493966;GTF2I:-1.47045701904;TBX4,5:-1.47544429602;PATZ1:-1.53082832665;GZF1:-1.53329738673;GTF2A1,2:-1.5358806787;ZIC1..3:-1.54844358784;SP1:-1.58070796266;RBPJ:-1.58654893974;SOX17:-1.63246011052;TEAD1:-1.70193893587;PAX1,9:-1.71094063727;HOX{A4,D4}:-1.72587347229;EN1,2:-1.7489594098;TLX1..3_NFIC{dimer}:-1.80279802964;NKX3-2:-1.82462217381;RXR{A,B,G}:-1.87169601266;IKZF1:-2.09815495534;XBP1:-2.56516085388 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11920-125H3;search_select_hide=table117:FF:11920-125H3 | |||
}} | }} |
Latest revision as of 18:29, 4 June 2020
Name: | CD4+CD25+CD45RA- memory regulatory T cells expanded, donor3 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs13812 |
Sample type: | primary cells |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13812
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13812
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.0883 |
10 | 10 | 0.00689 |
100 | 100 | 0.441 |
101 | 101 | 0.0573 |
102 | 102 | 0.434 |
103 | 103 | 0.49 |
104 | 104 | 0.707 |
105 | 105 | 0.334 |
106 | 106 | 0.332 |
107 | 107 | 0.664 |
108 | 108 | 0.72 |
109 | 109 | 0.0452 |
11 | 11 | 0.0284 |
110 | 110 | 0.353 |
111 | 111 | 0.133 |
112 | 112 | 0.181 |
113 | 113 | 0.312 |
114 | 114 | 0.23 |
115 | 115 | 0.584 |
116 | 116 | 0.449 |
117 | 117 | 0.00208 |
118 | 118 | 0.401 |
119 | 119 | 0.44 |
12 | 12 | 0.585 |
120 | 120 | 0.43 |
121 | 121 | 0.389 |
122 | 122 | 0.699 |
123 | 123 | 2.24352e-7 |
124 | 124 | 0.234 |
125 | 125 | 0.908 |
126 | 126 | 0.459 |
127 | 127 | 0.734 |
128 | 128 | 0.597 |
129 | 129 | 0.63 |
13 | 13 | 0.322 |
130 | 130 | 0.509 |
131 | 131 | 0.759 |
132 | 132 | 0.881 |
133 | 133 | 0.175 |
134 | 134 | 0.729 |
135 | 135 | 0.71 |
136 | 136 | 0.662 |
137 | 137 | 0.0437 |
138 | 138 | 0.21 |
139 | 139 | 0.153 |
14 | 14 | 0.276 |
140 | 140 | 0.127 |
141 | 141 | 0.367 |
142 | 142 | 0.811 |
143 | 143 | 0.0118 |
144 | 144 | 0.391 |
145 | 145 | 0.172 |
146 | 146 | 0.706 |
147 | 147 | 0.0974 |
148 | 148 | 0.0421 |
149 | 149 | 0.909 |
15 | 15 | 0.204 |
150 | 150 | 0.458 |
151 | 151 | 0.556 |
152 | 152 | 0.606 |
153 | 153 | 0.939 |
154 | 154 | 0.418 |
155 | 155 | 0.0446 |
156 | 156 | 0.508 |
157 | 157 | 0.113 |
158 | 158 | 0.226 |
159 | 159 | 0.671 |
16 | 16 | 0.609 |
160 | 160 | 0.429 |
161 | 161 | 0.165 |
162 | 162 | 0.381 |
163 | 163 | 0.54 |
164 | 164 | 0.0848 |
165 | 165 | 0.233 |
166 | 166 | 0.857 |
167 | 167 | 0.239 |
168 | 168 | 0.989 |
169 | 169 | 0.12 |
17 | 17 | 0.715 |
18 | 18 | 0.718 |
19 | 19 | 0.689 |
2 | 2 | 0.796 |
20 | 20 | 0.48 |
21 | 21 | 0.222 |
22 | 22 | 0.821 |
23 | 23 | 0.941 |
24 | 24 | 0.973 |
25 | 25 | 0.149 |
26 | 26 | 0.0357 |
27 | 27 | 0.368 |
28 | 28 | 0.519 |
29 | 29 | 0.0186 |
3 | 3 | 0.0289 |
30 | 30 | 0.0678 |
31 | 31 | 0.908 |
32 | 32 | 0.507 |
33 | 33 | 0.546 |
34 | 34 | 0.926 |
35 | 35 | 0.322 |
36 | 36 | 0.0163 |
37 | 37 | 0.156 |
38 | 38 | 0.598 |
39 | 39 | 0.622 |
4 | 4 | 0.844 |
40 | 40 | 0.199 |
41 | 41 | 0.675 |
42 | 42 | 0.0796 |
43 | 43 | 0.317 |
44 | 44 | 0.363 |
45 | 45 | 0.434 |
46 | 46 | 0.125 |
47 | 47 | 0.0123 |
48 | 48 | 0.0616 |
49 | 49 | 0.0937 |
5 | 5 | 0.828 |
50 | 50 | 0.774 |
51 | 51 | 0.644 |
52 | 52 | 0.51 |
53 | 53 | 0.143 |
54 | 54 | 0.751 |
55 | 55 | 0.756 |
56 | 56 | 0.461 |
57 | 57 | 0.21 |
58 | 58 | 0.119 |
59 | 59 | 0.489 |
6 | 6 | 0.338 |
60 | 60 | 0.379 |
61 | 61 | 0.135 |
62 | 62 | 0.0631 |
63 | 63 | 0.439 |
64 | 64 | 0.161 |
65 | 65 | 0.694 |
66 | 66 | 0.611 |
67 | 67 | 0.97 |
68 | 68 | 0.864 |
69 | 69 | 0.906 |
7 | 7 | 0.3 |
70 | 70 | 0.0455 |
71 | 71 | 0.024 |
72 | 72 | 0.057 |
73 | 73 | 0.39 |
74 | 74 | 0.489 |
75 | 75 | 0.0238 |
76 | 76 | 0.188 |
77 | 77 | 0.747 |
78 | 78 | 0.0527 |
79 | 79 | 0.793 |
8 | 8 | 0.501 |
80 | 80 | 0.295 |
81 | 81 | 0.321 |
82 | 82 | 0.0529 |
83 | 83 | 0.695 |
84 | 84 | 0.0457 |
85 | 85 | 0.984 |
86 | 86 | 0.122 |
87 | 87 | 0.54 |
88 | 88 | 0.844 |
89 | 89 | 0.376 |
9 | 9 | 0.96 |
90 | 90 | 0.0202 |
91 | 91 | 0.477 |
92 | 92 | 0.303 |
93 | 93 | 0.501 |
94 | 94 | 0.133 |
95 | 95 | 0.018 |
96 | 96 | 0.0798 |
97 | 97 | 0.224 |
98 | 98 | 0.119 |
99 | 99 | 0.059 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs13812
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000002 in vivo cell sample
FF:0000210 human sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA