FF:11862-125A8: Difference between revisions

Latest revision as of 18:24, 4 June 2020

Name:	CD14+ monocytes - treated with Trehalose dimycolate (TDM), donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs13467
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	NA
dev stage	NA
sex	female
age	69
cell type	monocyte
cell line	NA
company	NA
collaboration	Christine Wells (University of Queensland)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	D3-3
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004744

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13467		CAGE		DRX008156		DRR009028

Accession ID Hg19

Library id		BAM		CTSS
CNhs13467		DRZ000453		DRZ001838

Accession ID Hg38

Library id		BAM		CTSS
CNhs13467		DRZ011803		DRZ013188

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0.479
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.00974
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0.78
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.472
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.177
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0.0973
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0.353
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.546
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0.891
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.302
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0.546
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0.353
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0.302
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.45
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.464
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.296
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.701
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0.273
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0.333
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.363
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0.244
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.284
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0.655
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.796
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0.98
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.894
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.512
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.598
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.962
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.517
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.441
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.403
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.896
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0.353
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.363
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.709
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.791
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0.302
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.78
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.353
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0.21
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.63
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0.273
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.399
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0.177
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0.831
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0.877
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0.244
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0.113
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0.244
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0.244
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13467

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	1.50802e-6
MA0003.1	MA0003.1	0.787
MA0004.1	MA0004.1	0.171
MA0006.1	MA0006.1	0.629
MA0007.1	MA0007.1	0.705
MA0009.1	MA0009.1	0.228
MA0014.1	MA0014.1	0.901
MA0017.1	MA0017.1	0.119
MA0018.2	MA0018.2	0.0726
MA0019.1	MA0019.1	0.526
MA0024.1	MA0024.1	8.07187e-4
MA0025.1	MA0025.1	0.0232
MA0027.1	MA0027.1	0.774
MA0028.1	MA0028.1	0.143
MA0029.1	MA0029.1	0.104
MA0030.1	MA0030.1	0.0652
MA0031.1	MA0031.1	0.359
MA0035.2	MA0035.2	0.135
MA0038.1	MA0038.1	0.126
MA0039.2	MA0039.2	0.808
MA0040.1	MA0040.1	0.519
MA0041.1	MA0041.1	0.111
MA0042.1	MA0042.1	0.281
MA0043.1	MA0043.1	1.06923e-6
MA0046.1	MA0046.1	0.012
MA0047.2	MA0047.2	0.638
MA0048.1	MA0048.1	0.557
MA0050.1	MA0050.1	2.02491e-20
MA0051.1	MA0051.1	6.88155e-12
MA0052.1	MA0052.1	0.0519
MA0055.1	MA0055.1	0.664
MA0057.1	MA0057.1	0.569
MA0058.1	MA0058.1	0.0551
MA0059.1	MA0059.1	0.138
MA0060.1	MA0060.1	2.43199e-9
MA0061.1	MA0061.1	2.90346e-6
MA0062.2	MA0062.2	0.459
MA0065.2	MA0065.2	0.0195
MA0066.1	MA0066.1	0.0718
MA0067.1	MA0067.1	1.52463e-6
MA0068.1	MA0068.1	0.373
MA0069.1	MA0069.1	0.585
MA0070.1	MA0070.1	0.0118
MA0071.1	MA0071.1	0.406
MA0072.1	MA0072.1	0.972
MA0073.1	MA0073.1	0.555
MA0074.1	MA0074.1	0.138
MA0076.1	MA0076.1	0.149
MA0077.1	MA0077.1	0.161
MA0078.1	MA0078.1	0.439
MA0079.2	MA0079.2	0.223
MA0080.2	MA0080.2	1.10366e-12
MA0081.1	MA0081.1	2.86209e-4
MA0083.1	MA0083.1	0.452
MA0084.1	MA0084.1	0.946
MA0087.1	MA0087.1	0.803
MA0088.1	MA0088.1	0.453
MA0090.1	MA0090.1	0.34
MA0091.1	MA0091.1	0.584
MA0092.1	MA0092.1	0.352
MA0093.1	MA0093.1	0.214
MA0099.2	MA0099.2	4.10853e-43
MA0100.1	MA0100.1	0.716
MA0101.1	MA0101.1	3.25159e-5
MA0102.2	MA0102.2	6.46309e-7
MA0103.1	MA0103.1	0.267
MA0104.2	MA0104.2	0.359
MA0105.1	MA0105.1	2.90705e-10
MA0106.1	MA0106.1	0.984
MA0107.1	MA0107.1	5.61104e-6
MA0108.2	MA0108.2	0.147
MA0111.1	MA0111.1	0.609
MA0112.2	MA0112.2	2.02908e-4
MA0113.1	MA0113.1	0.631
MA0114.1	MA0114.1	0.278
MA0115.1	MA0115.1	0.847
MA0116.1	MA0116.1	4.06752e-4
MA0117.1	MA0117.1	0.0716
MA0119.1	MA0119.1	0.185
MA0122.1	MA0122.1	0.958
MA0124.1	MA0124.1	0.72
MA0125.1	MA0125.1	0.261
MA0131.1	MA0131.1	0.571
MA0135.1	MA0135.1	0.35
MA0136.1	MA0136.1	2.33104e-13
MA0137.2	MA0137.2	1.06974e-10
MA0138.2	MA0138.2	0.542
MA0139.1	MA0139.1	0.895
MA0140.1	MA0140.1	0.139
MA0141.1	MA0141.1	0.131
MA0142.1	MA0142.1	0.844
MA0143.1	MA0143.1	0.897
MA0144.1	MA0144.1	4.24584e-5
MA0145.1	MA0145.1	0.504
MA0146.1	MA0146.1	0.202
MA0147.1	MA0147.1	0.493
MA0148.1	MA0148.1	0.641
MA0149.1	MA0149.1	0.276
MA0150.1	MA0150.1	1.6167e-20
MA0152.1	MA0152.1	0.659
MA0153.1	MA0153.1	0.00236
MA0154.1	MA0154.1	0.00257
MA0155.1	MA0155.1	0.955
MA0156.1	MA0156.1	1.10842e-8
MA0157.1	MA0157.1	0.971
MA0159.1	MA0159.1	0.0192
MA0160.1	MA0160.1	0.0332
MA0162.1	MA0162.1	0.683
MA0163.1	MA0163.1	1.18406e-7
MA0164.1	MA0164.1	0.539
MA0258.1	MA0258.1	0.00618
MA0259.1	MA0259.1	0.996

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13467

Novel motif	Logo	P-value
1	1	0.0898
10	10	0.0129
100	100	0.934
101	101	0.988
102	102	0.822
103	103	0.401
104	104	0.604
105	105	0.204
106	106	9.23421e-4
107	107	0.27
108	108	0.938
109	109	0.294
11	11	0.15
110	110	0.121
111	111	0.0256
112	112	0.376
113	113	0.523
114	114	0.0134
115	115	0.288
116	116	0.821
117	117	0.0385
118	118	0.168
119	119	0.137
12	12	0.349
120	120	0.968
121	121	0.501
122	122	0.736
123	123	0.0807
124	124	0.637
125	125	0.358
126	126	0.292
127	127	0.421
128	128	0.039
129	129	0.492
13	13	0.0767
130	130	0.0724
131	131	0.768
132	132	0.0765
133	133	0.569
134	134	0.596
135	135	0.746
136	136	0.887
137	137	0.0152
138	138	0.223
139	139	0.0543
14	14	0.421
140	140	0.316
141	141	0.271
142	142	0.0982
143	143	0.0457
144	144	0.812
145	145	0.269
146	146	0.547
147	147	0.516
148	148	0.0176
149	149	0.823
15	15	0.177
150	150	0.438
151	151	0.418
152	152	0.216
153	153	0.734
154	154	0.435
155	155	0.719
156	156	0.499
157	157	0.53
158	158	0.0165
159	159	0.929
16	16	0.294
160	160	0.408
161	161	0.605
162	162	0.223
163	163	0.124
164	164	0.0727
165	165	0.179
166	166	0.633
167	167	0.104
168	168	0.346
169	169	0.0117
17	17	0.229
18	18	0.175
19	19	0.428
2	2	0.507
20	20	0.157
21	21	0.512
22	22	0.365
23	23	0.0437
24	24	0.321
25	25	0.421
26	26	0.0476
27	27	0.536
28	28	0.48
29	29	0.212
3	3	0.101
30	30	0.393
31	31	0.888
32	32	0.929
33	33	0.284
34	34	0.786
35	35	0.151
36	36	0.0885
37	37	0.0724
38	38	0.407
39	39	0.863
4	4	0.812
40	40	0.207
41	41	0.0123
42	42	0.366
43	43	0.032
44	44	0.941
45	45	0.965
46	46	0.184
47	47	0.539
48	48	0.526
49	49	0.123
5	5	0.327
50	50	0.976
51	51	0.523
52	52	0.398
53	53	0.465
54	54	0.404
55	55	0.551
56	56	0.711
57	57	0.742
58	58	0.138
59	59	0.355
6	6	0.674
60	60	0.0518
61	61	0.704
62	62	0.0728
63	63	0.482
64	64	0.397
65	65	0.26
66	66	0.24
67	67	0.619
68	68	0.803
69	69	0.462
7	7	0.295
70	70	0.0343
71	71	0.0305
72	72	0.217
73	73	0.166
74	74	0.0896
75	75	0.093
76	76	0.133
77	77	0.57
78	78	0.0784
79	79	0.2
8	8	0.394
80	80	0.381
81	81	0.377
82	82	0.173
83	83	0.0697
84	84	0.246
85	85	0.0191
86	86	0.0677
87	87	0.98
88	88	0.578
89	89	0.327
9	9	0.531
90	90	0.0665
91	91	0.255
92	92	0.26
93	93	0.445
94	94	0.0684
95	95	0.348
96	96	0.666
97	97	0.792
98	98	0.135
99	99	0.0406

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13467

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011444 CD14-positive monocytes - treated with Trehalose dimycolate (TDM) sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000325 (stuff accumulating cell)
0000473 (defensive cell)
0000234 (phagocyte)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0000255 (eukaryotic cell)
0000576 (monocyte)
0000860 (classical monocyte)
0002057 (CD14-positive, CD16-negative classical monocyte)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000625 (experimental infection sample)
0000350 (experimentally modified sample)
0000631 (trehalose dimycolate (TDM) treatment sample)
0011444 (CD14-positive monocytes - treated with Trehalose dimycolate (TDM) sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
CL:0002057 (CD14-positive, CD16-negative classical monocyte)

@@ Line 1: / Line 1: @@
 {{f5samples
 |DRA_sample_Accession=CAGE@SAMD00004744
-|accession_numbers=CAGE;DRX008156;DRR009028;DRZ000453;DRZ001838
+|accession_numbers=CAGE;DRX008156;DRR009028;DRZ000453;DRZ001838;DRZ011803;DRZ013188
 |ancestors_in_anatomy_facet=
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000325,CL:0000473,CL:0000234,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0000860,CL:0002057
@@ Line 13: / Line 13: @@
 |def=
 |expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!3.72!5200.34!PLEK;;chr16:85932760..85932775,+!p1@IRF8!2.97!937.66!IRF8;;chr11:47400078..47400106,-!p1@SPI1!2.68!473.10!SPI1;;chr10:64576105..64576133,-!p1@EGR2!2.64!856.51!EGR2;;chr10:35484053..35484076,+!p1@CREM!2.62!985.90!CREM;;chr12:54778471..54778528,-!p1@ZNF385A!2.47!295.97!ZNF385A;;chr7:115670804..115670825,-!p1@TFEC!2.31!203.26!TFEC;;chr20:39317868..39317884,-!p1@MAFB!2.26!2021.55!MAFB;;chr11:47399947..47399961,-!p3@SPI1!2.19!152.26!SPI1;;chr11:64764435..64764449,-!p1@BATF2!2.14!184.42!BATF2;;chr6:106534192..106534224,+!p1@PRDM1!2.10!339.94!PRDM1;;chr6:36355431..36355466,-!p1@ETV7!2.06!114.57!ETV7;;chr7:128577972..128578047,+!p1@IRF5!2.00!153.01!IRF5;;chr21:36260295..36260310,-!p3@RUNX1!1.99!152.26!RUNX1;;chr5:131826457..131826514,-!p1@IRF1!1.98!3454.17!IRF1;;chr11:47400062..47400077,-!p2@SPI1!1.98!95.22!SPI1;;chr2:70142232..70142251,+!p1@MXD1!1.94!464.31!MXD1;;chr10:35484090..35484104,+!p6@CREM!1.94!85.42!CREM;;chr1:221052776..221052799,+!p1@HLX!1.93!147.99!HLX;;chr17:45810594..45810608,+!p1@TBX21!1.93!83.16!TBX21;;chr11:47399996..47400014,-!p4@SPI1!1.91!79.65!SPI1;;chr11:615942..615957,-!p1@IRF7!1.86!643.70!IRF7;;chr1:25256756..25256774,-!p1@RUNX3!1.84!125.62!RUNX3;;chr21:34442439..34442455,+!p1@OLIG1!1.84!68.59!OLIG1;;chr1:158985493..158985535,+!p4@IFI16!1.83!99.24!IFI16;;chr19:45971246..45971265,+!p1@FOSB!1.81!1118.56!FOSB;;chr6:106534230..106534254,+!p2@PRDM1!1.80!152.01!PRDM1;;chr1:221052733..221052749,+!p2@HLX!1.80!79.90!HLX;;chr10:64018918..64018936,+!p2@ZNF365!1.80!62.81!ZNF365;;chr16:31885093..31885165,+!p1@ZNF267!1.79!875.60!ZNF267;;chr10:31288398..31288455,-!p2@ZNF438!1.79!69.60!ZNF438;;chr2:68592394..68592405,+!p2@PLEK!1.79!61.30!PLEK;;chr11:65430554..65430579,-!p3@RELA!1.76!139.44!RELA;;chr3:12329397..12329433,+!p2@PPARG!1.74!118.59!PPARG;;chr2:231084639..231084654,-!p2@SP110!1.73!84.92!SP110;;chr2:145277640..145277771,-!p1@ZEB2!1.72!655.01!ZEB2;;chr2:157189180..157189290,-!p1@NR4A2!1.72!253.26!NR4A2;;chr22:38597987..38598021,+!p2@MAFF!1.71!290.44!MAFF;;chr19:50432132..50432217,+!p2@ATF5!1.71!59.29!ATF5;;chr11:47400032..47400043,-!p5@SPI1!1.69!47.49!SPI1;;chr2:145275162..145275202,-!p2@ZEB2!1.68!262.05!ZEB2;;chr12:72056749..72056767,+!p6@THAP2!1.68!52.01!THAP2;;chr19:33793430..33793447,-!p1@CEBPA!1.67!186.43!CEBPA;;chr12:72056800..72056834,+!p1@THAP2!1.67!60.30!THAP2;;chr21:30671690..30671762,+!p2@BACH1!1.66!146.98!BACH1;;chr2:97202480..97202499,+!p1@ARID5A!1.65!422.35!ARID5A;;chr8:22550982..22550999,-!p1@EGR3!1.65!120.35!EGR3;;chr9:102584159..102584174,+!p2@NR4A3!1.64!74.62!NR4A3;;chr16:79634624..79634642,-!p1@MAF!1.62!153.26!MAF;;chr11:65430535..65430549,-!p4@RELA!1.62!46.73!RELA;;chr14:75988831..75988847,+!p2@BATF!1.61!39.70!BATF;;chr12:54778351..54778378,-!p6@ZNF385A!1.59!37.69!ZNF385A;;chr1:212782094..212782109,+!p1@ATF3!1.58!959.77!ATF3;;chr14:75988771..75988826,+!p1@BATF!1.58!49.24!BATF;;chr10:31288370..31288393,-!p3@ZNF438!1.58!37.18!ZNF438;;chr21:30671235..30671253,+!p1@BACH1!1.57!433.91!BACH1;;chr1:158979872..158979898,+!p3@IFI16!1.57!108.04!IFI16;;chr12:72056773..72056796,+!p3@THAP2!1.57!46.73!THAP2;;chr2:191885737..191885750,-!p4@STAT1!1.57!36.43!STAT1;;chr3:12330560..12330579,+!p1@PPARG!1.56!39.95!PPARG;;chr10:35484804..35484902,+!p2@CREM!1.54!124.37!CREM;;chr6:15246200..15246214,+!p2@JARID2!1.54!91.20!JARID2;;chr17:38497662..38497713,+!p4@RARA!1.52!37.18!RARA;;chr2:231090471..231090504,+!p2@SP140!1.52!32.16!SP140;;chr21:36421535..36421610,-!p2@RUNX1!1.49!103.01!RUNX1;;chr9:110252035..110252057,-!p1@KLF4!1.48!447.73!KLF4;;chr11:615570..615721,-!p2@IRF7!1.48!56.78!IRF7;;chr4:185395590..185395627,-!p3@IRF2!1.48!35.93!IRF2;;chr9:102584262..102584276,+!p1@NR4A3!1.47!62.56!NR4A3;;chrX:129244454..129244488,-!p1@ELF4!1.46!193.21!ELF4;;chr13:41593425..41593480,-!p1@ELF1!1.46!170.35!ELF1;;chr12:48298765..48298783,-!p2@VDR!1.45!56.03!VDR;;chr19:36391434..36391450,-!p1@NFKBID!1.44!51.76!NFKBID;;chr3:39195139..39195150,-!p3@CSRNP1!1.44!33.67!CSRNP1;;chr11:65430038..65430053,-!p12@RELA!1.44!26.38!RELA;;chr6:391743..391759,+!p1@IRF4!1.44!26.38!IRF4;;chr21:36260343..36260402,-!p6@RUNX1!1.43!41.20!RUNX1;;chr19:45251395..45251432,+!p8@BCL3!1.43!25.88!BCL3;;chr6:106535598..106535637,+!p7@PRDM1!1.43!25.63!PRDM1;;chr6:144385698..144385742,-!p2@PLAGL1!1.41!29.65!PLAGL1;;chr9:102584128..102584144,+!p3@NR4A3!1.40!44.97!NR4A3;;chr20:48807351..48807384,+!p1@CEBPB!1.39!2320.78!CEBPB;;chr4:185395633..185395651,-!p2@IRF2!1.39!37.69!IRF2;;chr11:47400045..47400060,-!p6@SPI1!1.38!23.11!SPI1;;chr12:11802753..11802834,+!p2@ETV6!1.37!107.53!ETV6;;chr8:116681123..116681143,-!p4@TRPS1!1.36!41.46!TRPS1;;chr2:28618532..28618610,+!p4@FOSL2!1.36!37.44!FOSL2;;chr14:35872453..35872485,-!p2@NFKBIA!1.34!50.75!NFKBIA;;chr2:70167296..70167306,+!p3@MXD1!1.34!31.91!MXD1;;chr10:51572408..51572454,+!p3@NCOA4!1.33!115.83!NCOA4;;chr2:145277882..145277967,-!p3@ZEB2!1.33!35.17!ZEB2;;chr21:30672433..30672464,+!p6@BACH1!1.33!20.60!BACH1;;chr4:106068026..106068084,+!p1@TET2!1.31!169.34!TET2;;chr11:65429891..65429915,-!p7@RELA!1.31!19.60!RELA;;chr11:47399920..47399931,-!p7@SPI1!1.31!19.35!SPI1;;chr3:187463179..187463201,-!p2@BCL6!1.30!75.88!BCL6;;chr6:126240380..126240430,+!p2@NCOA7!1.30!48.74!NCOA7;;chr9:110250697..110250738,-!p2@KLF4!1.30!22.36!KLF4;;chr7:50344289..50344323,+!p1@IKZF1!1.29!18.59!IKZF1;;chrX:153305787..153305807,-!p3@MECP2!1.29!18.59!MECP2;;chr21:36260325..36260341,-!p14@RUNX1!1.29!18.34!RUNX1;;chr3:39195037..39195069,-!p2@CSRNP1!1.28!110.05!CSRNP1;;chr18:3449720..3449749,+!p2@TGIF1!1.28!37.94!TGIF1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.28!18.09!ZBED1;;chr12:52445218..52445237,+!p1@NR4A1!1.26!213.31!NR4A1;;chr19:45250948..45250998,+!p3@BCL3!1.26!43.47!BCL3;;chr16:79634595..79634620,-!p2@MAF!1.26!31.15!MAF;;chr9:129567282..129567353,+!p1@ZBTB43!1.25!216.33!ZBTB43;;chr1:221052840..221052875,+!p4@HLX!1.25!19.85!HLX;;chr14:75745523..75745537,+!p1@FOS!1.24!1889.14!FOS;;chr21:36260980..36261011,-!p1@RUNX1!1.24!455.77!RUNX1;;chr1:158979792..158979814,+!p2@IFI16!1.24!153.76!IFI16;;chr2:61108695..61108753,+!p1@REL!1.24!111.55!REL;;chr10:104155480..104155534,+!p2@NFKB2!1.24!103.26!NFKB2;;chr18:3449586..3449617,+!p8@TGIF1!1.24!26.38!TGIF1;;chr1:25256439..25256476,-!p3@RUNX3!1.24!16.33!RUNX3;;chr2:70314240..70314256,+!p4@PCBP1!1.23!33.16!PCBP1;;chr2:145271342..145271377,-!p5@ZEB2!1.23!15.83!ZEB2;;chr3:187455680..187455700,-!p4@BCL6!1.23!15.83!BCL6;;chr10:51572339..51572376,+!p4@NCOA4!1.22!35.17!NCOA4;;chr12:48298785..48298828,-!p1@VDR!1.21!80.40!VDR;;chr1:221053049..221053075,+!p3@HLX!1.21!26.63!HLX;;chr20:48809000..48809053,+!p12@CEBPB!1.21!20.35!CEBPB;;chr18:3449618..3449634,+!p13@TGIF1!1.21!18.84!TGIF1;;chr2:231090433..231090469,+!p1@SP140!1.21!15.33!SP140;;chr3:187455486..187455504,-!p6@BCL6!1.21!15.33!BCL6;;chrX:129244430..129244442,-!p5@ELF4!1.21!15.33!ELF4;;chr19:54058073..54058088,+!p1@ZNF331!1.21!15.07!ZNF331;;chr22:38598086..38598105,+!p1@MAFF!1.20!156.28!MAFF;;chr6:126240463..126240489,+!p6@NCOA7!1.20!16.58!NCOA7;;chr22:38598057..38598071,+!p3@MAFF!1.19!33.42!MAFF;;chr14:35873947..35873965,-!p1@NFKBIA!1.18!875.85!NFKBIA;;chr6:44233252..44233296,-!p1@NFKBIE!1.18!137.68!NFKBIE;;chr7:28725740..28725778,+!p1@CREB5!1.18!124.87!CREB5;;chr10:3827371..3827386,-!p2@KLF6!1.18!117.33!KLF6;;chr1:221052994..221053008,+!p6@HLX!1.18!16.58!HLX;;chr1:212738742..212738755,+!p2@ATF3!1.18!14.07!ATF3;;chr17:38497715..38497734,+!p8@RARA!1.18!14.07!RARA;;chr20:48599506..48599526,+!p1@SNAI1!1.17!87.18!SNAI1;;chr16:3285119..3285133,-!p2@ZNF200!1.17!27.64!ZNF200;;chr21:30672734..30672748,+!p11@BACH1!1.17!13.82!BACH1;;chr2:28615716..28615733,+!p1@FOSL2!1.16!635.16!FOSL2;;chr2:231084659..231084721,-!p1@SP110!1.16!311.05!SP110;;chr16:3285144..3285191,-!p1@ZNF200!1.16!66.08!ZNF200;;chr7:149470641..149470694,-!p1@ZNF467!1.16!60.05!ZNF467;;chr19:45252008..45252024,+!p2@BCL3!1.16!44.22!BCL3;;chr10:64575812..64575824,-!p4@EGR2!1.16!13.57!EGR2;;chr1:158979922..158979933,+!p13@IFI16!1.16!13.32!IFI16;;chr4:103422499..103422632,+!p1@NFKB1!1.15!273.11!NFKB1;;chr8:116681150..116681164,-!p5@TRPS1!1.15!25.63!TRPS1;;chr4:81118647..81118666,+!p1@PRDM8!1.15!17.34!PRDM8;;chr17:38474489..38474548,+!p1@RARA!1.14!400.24!RARA;;chr8:116681194..116681214,-!p1@TRPS1!1.14!118.84!TRPS1;;chr3:39195075..39195088,-!p1@CSRNP1!1.14!79.14!CSRNP1;;chr14:35872962..35873025,-!p3@NFKBIA!1.14!32.16!NFKBIA;;chr18:3449527..3449582,+!p6@TGIF1!1.14!24.37!TGIF1;;chr6:15246261..15246312,+!p1@JARID2!1.13!300.24!JARID2;;chr1:161736038..161736056,+!p4@ATF6!1.13!29.65!ATF6;;chr18:3448455..3448480,+!p5@TGIF1!1.13!23.11!TGIF1;;chr6:15246217..15246228,+!p3@JARID2!1.13!22.36!JARID2;;chr1:8484007..8484061,-!p13@RERE!1.13!16.08!RERE;;chr2:145275228..145275241,-!p11@ZEB2!1.13!15.33!ZEB2;;chr19:54041669..54041697,+!p2@ZNF331!1.13!12.56!ZNF331;;chr19:19496539..19496576,+!p8@GATAD2A!1.12!21.36!GATAD2A;;chr4:185395191..185395226,-!p4@IRF2!1.12!17.08!IRF2;;chr8:53373491..53373506,-!p4@ST18!1.12!12.31!ST18;;chr12:56415246..56415286,+!p2@IKZF4!1.12!12.06!IKZF4;;chr21:40177845..40177863,+!p1@ETS2!1.11!708.02!ETS2;;chr20:48807456..48807475,+!p3@CEBPB!1.11!23.11!CEBPB;;chr2:231280954..231280965,+!p2@SP100!1.11!22.11!SP100;;chr3:187455634..187455651,-!p7@BCL6!1.11!11.81!BCL6;;chr4:106066712..106066728,+!p8@TET2!1.11!11.81!TET2;;chr13:41593392..41593403,-!p7@ELF1!1.11!11.81!ELF1;;chr7:17338266..17338282,+!p1@AHR!1.10!124.12!AHR;;chr8:72756063..72756125,-!p1@MSC!1.10!23.62!MSC;;chr20:48807615..48807644,+!p6@CEBPB!1.10!19.35!CEBPB;;chr3:150126101..150126118,+!p6@TSC22D2!1.10!18.84!TSC22D2;;chr5:142782823..142782854,-!p3@NR3C1!1.10!16.58!NR3C1;;chr21:34398234..34398250,+!p1@OLIG2!1.10!11.56!OLIG2;;chr9:88969303..88969335,-!p1@ZCCHC6!1.09!105.02!ZCCHC6;;chr10:35416142..35416169,+!p3@CREM!1.09!30.40!CREM;;chr1:158979851..158979865,+!p5@IFI16!1.09!25.12!IFI16;;chr12:54785074..54785122,-!p2@ZNF385A!1.09!17.59!ZNF385A;;chr9:88969339..88969422,-!p2@ZCCHC6!1.08!87.18!ZCCHC6;;chr10:104154246..104154347,+!p3@NFKB2!1.08!67.33!NFKB2;;chr14:62162285..62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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000234;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000576;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000763;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000766;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000860;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405
 |ffid_belonging_in_development=CL:0000049,CL:0000134,CL:0002057
 |fonse_cell_line=
@@ Line 41: / Line 42: @@
 |fonse_treatment_closure=EFO:0000369,FF:0000625,FF:0000631,FF:0011444,FF:11862-125A8
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Trehalose%2520dimycolate%2520%2528TDM%2529%252c%2520donor1.CNhs13467.11862-125A8.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Trehalose%2520dimycolate%2520%2528TDM%2529%252c%2520donor1.CNhs13467.11862-125A8.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Trehalose%2520dimycolate%2520%2528TDM%2529%252c%2520donor1.CNhs13467.11862-125A8.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Trehalose%2520dimycolate%2520%2528TDM%2529%252c%2520donor1.CNhs13467.11862-125A8.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Trehalose%2520dimycolate%2520%2528TDM%2529%252c%2520donor1.CNhs13467.11862-125A8.hg38.nobarcode.ctss.bed.gz
 |id=FF:11862-125A8
 |is_a=EFO:0002091;;FF:0011444
@@ Line 46: / Line 52: @@
 |library_id=CNhs13467
 |library_id_phase_based=2:CNhs13467
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11862
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11862
 |name=CD14+ monocytes - treated with Trehalose dimycolate (TDM), donor1
 |namespace=
@@ Line 53: / Line 63: @@
 |profile_rnaseq=
 |profile_srnaseq=,,,
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11862-125A8;search_select_hide=table117:FF:11862-125A8
 }}

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FF:11862-125A8: Difference between revisions

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Latest revision as of 18:24, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0