FF:11455-119A6: Difference between revisions

Latest revision as of 18:02, 4 June 2020

Name:	Skeletal Muscle Cells, donor5
Species:	Human (Homo sapiens)
Library ID:	CNhs12056
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	skeletal muscle
dev stage	fetus
sex	unknown
age	fetal
cell type	skeletal muscle cell
cell line	NA
company	Sciencell/3H
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	482
catalog number	SC3505
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005660

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12056		CAGE		DRX008456		DRR009328

Accession ID Hg19

Library id		BAM		CTSS
CNhs12056		DRZ000753		DRZ002138

Accession ID Hg38

Library id		BAM		CTSS
CNhs12056		DRZ012103		DRZ013488

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0338
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.41
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.0278
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0.062
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.062
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	-0.0228
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.137
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.159
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0.116
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.566
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.127
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0.062
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.11
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0.284
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.522
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.404
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0.062
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.129
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.0374
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.284
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.3
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.702
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.348
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0.116
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.348
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.737
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12056

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.00737
MA0003.1	MA0003.1	0.652
MA0004.1	MA0004.1	0.933
MA0006.1	MA0006.1	0.81
MA0007.1	MA0007.1	0.0441
MA0009.1	MA0009.1	0.187
MA0014.1	MA0014.1	0.661
MA0017.1	MA0017.1	0.483
MA0018.2	MA0018.2	0.0554
MA0019.1	MA0019.1	0.596
MA0024.1	MA0024.1	2.56475e-7
MA0025.1	MA0025.1	0.00851
MA0027.1	MA0027.1	0.644
MA0028.1	MA0028.1	0.00146
MA0029.1	MA0029.1	0.884
MA0030.1	MA0030.1	0.00543
MA0031.1	MA0031.1	8.93502e-4
MA0035.2	MA0035.2	0.014
MA0038.1	MA0038.1	0.0928
MA0039.2	MA0039.2	0.454
MA0040.1	MA0040.1	0.169
MA0041.1	MA0041.1	0.194
MA0042.1	MA0042.1	0.263
MA0043.1	MA0043.1	0.066
MA0046.1	MA0046.1	0.0141
MA0047.2	MA0047.2	0.0121
MA0048.1	MA0048.1	0.00644
MA0050.1	MA0050.1	8.1045e-6
MA0051.1	MA0051.1	4.8368e-5
MA0052.1	MA0052.1	0.336
MA0055.1	MA0055.1	0.00568
MA0057.1	MA0057.1	0.845
MA0058.1	MA0058.1	0.709
MA0059.1	MA0059.1	0.16
MA0060.1	MA0060.1	5.44547e-4
MA0061.1	MA0061.1	6.10362e-5
MA0062.2	MA0062.2	0.498
MA0065.2	MA0065.2	0.993
MA0066.1	MA0066.1	0.248
MA0067.1	MA0067.1	0.0048
MA0068.1	MA0068.1	0.225
MA0069.1	MA0069.1	0.7
MA0070.1	MA0070.1	0.547
MA0071.1	MA0071.1	0.262
MA0072.1	MA0072.1	0.31
MA0073.1	MA0073.1	0.881
MA0074.1	MA0074.1	0.485
MA0076.1	MA0076.1	0.0337
MA0077.1	MA0077.1	0.59
MA0078.1	MA0078.1	0.619
MA0079.2	MA0079.2	0.331
MA0080.2	MA0080.2	2.24604e-14
MA0081.1	MA0081.1	0.0231
MA0083.1	MA0083.1	0.00119
MA0084.1	MA0084.1	0.417
MA0087.1	MA0087.1	0.97
MA0088.1	MA0088.1	3.18453e-4
MA0090.1	MA0090.1	0.106
MA0091.1	MA0091.1	0.0266
MA0092.1	MA0092.1	0.409
MA0093.1	MA0093.1	0.93
MA0099.2	MA0099.2	2.40367e-7
MA0100.1	MA0100.1	0.202
MA0101.1	MA0101.1	4.93343e-4
MA0102.2	MA0102.2	0.024
MA0103.1	MA0103.1	3.2561e-5
MA0104.2	MA0104.2	0.0463
MA0105.1	MA0105.1	0.105
MA0106.1	MA0106.1	0.491
MA0107.1	MA0107.1	5.336e-6
MA0108.2	MA0108.2	0.00343
MA0111.1	MA0111.1	0.878
MA0112.2	MA0112.2	0.57
MA0113.1	MA0113.1	0.267
MA0114.1	MA0114.1	0.86
MA0115.1	MA0115.1	0.673
MA0116.1	MA0116.1	0.424
MA0117.1	MA0117.1	0.162
MA0119.1	MA0119.1	0.0593
MA0122.1	MA0122.1	0.533
MA0124.1	MA0124.1	0.734
MA0125.1	MA0125.1	0.708
MA0131.1	MA0131.1	0.392
MA0135.1	MA0135.1	0.342
MA0136.1	MA0136.1	3.65711e-13
MA0137.2	MA0137.2	0.94
MA0138.2	MA0138.2	0.866
MA0139.1	MA0139.1	0.477
MA0140.1	MA0140.1	0.126
MA0141.1	MA0141.1	0.153
MA0142.1	MA0142.1	0.0643
MA0143.1	MA0143.1	0.909
MA0144.1	MA0144.1	0.499
MA0145.1	MA0145.1	0.74
MA0146.1	MA0146.1	0.17
MA0147.1	MA0147.1	0.0359
MA0148.1	MA0148.1	0.0349
MA0149.1	MA0149.1	0.962
MA0150.1	MA0150.1	0.00194
MA0152.1	MA0152.1	0.0294
MA0153.1	MA0153.1	0.758
MA0154.1	MA0154.1	0.239
MA0155.1	MA0155.1	0.816
MA0156.1	MA0156.1	1.40788e-10
MA0157.1	MA0157.1	0.00958
MA0159.1	MA0159.1	0.301
MA0160.1	MA0160.1	0.175
MA0162.1	MA0162.1	0.304
MA0163.1	MA0163.1	0.00826
MA0164.1	MA0164.1	0.881
MA0258.1	MA0258.1	0.382
MA0259.1	MA0259.1	0.0638

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12056

Novel motif	Logo	P-value
1	1	0.732
10	10	0.147
100	100	0.446
101	101	0.365
102	102	0.492
103	103	0.512
104	104	0.808
105	105	0.312
106	106	0.00122
107	107	0.815
108	108	0.833
109	109	0.686
11	11	0.4
110	110	0.00462
111	111	0.848
112	112	0.118
113	113	0.38
114	114	0.132
115	115	0.682
116	116	0.143
117	117	0.373
118	118	0.952
119	119	0.325
12	12	0.417
120	120	0.0981
121	121	0.807
122	122	6.72538e-4
123	123	0.101
124	124	0.23
125	125	0.653
126	126	0.67
127	127	0.111
128	128	0.4
129	129	0.183
13	13	0.185
130	130	0.299
131	131	0.872
132	132	0.49
133	133	0.807
134	134	0.441
135	135	0.159
136	136	0.114
137	137	0.0309
138	138	0.0295
139	139	0.0821
14	14	0.241
140	140	0.436
141	141	0.908
142	142	0.964
143	143	0.112
144	144	0.717
145	145	0.939
146	146	0.771
147	147	0.509
148	148	0.322
149	149	0.762
15	15	0.245
150	150	0.974
151	151	0.677
152	152	0.388
153	153	0.476
154	154	0.604
155	155	0.0483
156	156	0.163
157	157	0.324
158	158	0.0102
159	159	0.145
16	16	0.511
160	160	0.301
161	161	0.896
162	162	0.0913
163	163	0.347
164	164	0.291
165	165	0.288
166	166	0.227
167	167	0.191
168	168	0.217
169	169	0.456
17	17	0.735
18	18	0.554
19	19	0.21
2	2	0.823
20	20	0.963
21	21	0.0519
22	22	0.793
23	23	0.0312
24	24	0.32
25	25	0.632
26	26	0.116
27	27	0.563
28	28	0.102
29	29	0.225
3	3	0.924
30	30	0.949
31	31	0.505
32	32	0.00184
33	33	0.366
34	34	0.967
35	35	0.218
36	36	0.214
37	37	0.741
38	38	0.571
39	39	0.501
4	4	0.0612
40	40	0.193
41	41	0.00448
42	42	0.532
43	43	0.488
44	44	0.13
45	45	0.108
46	46	0.738
47	47	0.894
48	48	0.599
49	49	0.177
5	5	0.296
50	50	0.386
51	51	0.588
52	52	0.294
53	53	0.331
54	54	0.538
55	55	0.946
56	56	0.941
57	57	0.954
58	58	0.128
59	59	0.967
6	6	0.571
60	60	0.0856
61	61	0.414
62	62	0.135
63	63	0.815
64	64	0.95
65	65	0.54
66	66	0.572
67	67	0.494
68	68	0.203
69	69	0.576
7	7	0.538
70	70	0.024
71	71	0.489
72	72	0.196
73	73	0.622
74	74	0.744
75	75	0.446
76	76	0.935
77	77	0.982
78	78	0.683
79	79	0.0287
8	8	0.225
80	80	0.0341
81	81	0.49
82	82	0.07
83	83	0.889
84	84	0.885
85	85	0.00575
86	86	0.584
87	87	0.0979
88	88	0.573
89	89	0.679
9	9	0.864
90	90	0.425
91	91	0.442
92	92	0.687
93	93	0.731
94	94	0.718
95	95	0.224
96	96	0.338
97	97	0.885
98	98	0.422
99	99	8.93668e-4

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12056

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000162 human skeletal muscle cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0000188 (cell of skeletal muscle)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001134 (skeletal muscle tissue)
0000479 (tissue)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002036 (striated muscle tissue)
0002385 (muscle tissue)
0010317 (germ layer / neural crest derived structure)
0001015 (musculature)
0002204 (musculoskeletal system)
0000383 (musculature of body)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000162 (human skeletal muscle cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
 |DRA_sample_Accession=CAGE@SAMD00005660
-|accession_numbers=CAGE;DRX008456;DRR009328;DRZ000753;DRZ002138
+|accession_numbers=CAGE;DRX008456;DRR009328;DRZ000753;DRZ002138;DRZ012103;DRZ013488
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001134,UBERON:0000479,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002036,UBERON:0002385,UBERON:0010317,UBERON:0001015,UBERON:0002204,UBERON:0000383
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000211,CL:0000255,CL:0000188
@@ Line 13: / Line 13: @@
 |def=
 |expression_enrichment_score=chr1:203055129..203055147,-!p1@MYOG!1.82!64.78!MYOG;;chr8:25902876..25902936,-!p1@EBF2!1.79!60.17!EBF2;;chr3:12330560..12330579,+!p1@PPARG!1.64!49.12!PPARG;;chr7:19157248..19157268,-!p1@TWIST1!1.40!65.85!TWIST1;;chr5:158526917..158526932,-!p1@EBF1!1.24!40.22!EBF1;;chr17:1959369..1959388,+!p2@HIC1!1.17!36.23!HIC1;;chr11:17741111..17741124,+!p1@MYOD1!1.13!12.43!MYOD1;;chr14:61116183..61116208,-!p1@SIX1!1.11!45.44!SIX1;;chr1:170632285..170632309,+!p1@PRRX1!1.11!13.51!PRRX1;;chr7:15726296..15726315,-!p1@MEOX2!1.09!11.21!MEOX2;;chr10:131762504..131762555,-!p1@EBF3!1.07!10.75!EBF3;;chr3:12329397..12329433,+!p2@PPARG!1.06!24.10!PPARG;;chr11:47279504..47279563,+!p1@NR1H3!1.02!21.80!NR1H3;;chr19:46801639..46801699,+!p1@HIF3A!1.02!9.36!HIF3A;;chr12:66218255..66218304,+!p3@HMGA2!1.01!25.33!HMGA2;;chr1:170633348..170633399,+!p2@PRRX1!1.01!12.59!PRRX1;;chr12:66218183..66218209,+!p4@HMGA2!1.00!17.50!HMGA2;;chr12:66218598..66218645,+!p2@HMGA2!0.98!40.83!HMGA2;;chr15:42749722..42749739,-!p2@ZFP106!0.98!15.50!ZFP106;;chr12:66218212..66218244,+!p5@HMGA2!0.97!12.13!HMGA2;;chr3:25470156..25470227,+!p2@RARB!0.96!8.14!RARB;;chr8:49833948..49833973,-!p2@SNAI2!0.95!51.42!SNAI2;;chr15:57511609..57511651,+!p2@TCF12!0.95!13.66!TCF12;;chr7:15726243..15726293,-!p2@MEOX2!0.95!7.98!MEOX2;;chr2:176994408..176994492,+!p1@HOXD8!0.93!7.52!HOXD8;;chr1:170633262..170633285,+!p3@PRRX1!0.92!8.44!PRRX1;;chr7:19157043..19157088,-!p2@TWIST1!0.90!18.27!TWIST1;;chr8:128748308..128748324,+!p2@MYC!0.89!198.17!MYC;;chr6:34204921..34204939,+!p3@HMGA1!0.87!203.24!HMGA1;;chr3:12329358..12329393,+!p3@PPARG!0.87!16.58!PPARG;;chr5:137804484..137804498,+!p2@EGR1!0.86!26.56!EGR1;;chr11:113930425..113930471,+!p1@ZBTB16!0.85!8.90!ZBTB16;;chr21:47063625..47063658,+!p1@PCBP3!0.83!26.56!PCBP3;;chr2:5832508..5832524,+!p1@SOX11!0.83!5.83!SOX11;;chr19:45260775..45260838,+!p5@BCL3!0.82!7.37!BCL3;;chr12:54447637..54447659,+!p4@HOXC4!0.82!5.68!HOXC4;;chr2:45236540..45236577,-!p1@SIX2!0.81!5.53!SIX2;;chr5:158527104..158527135,-!p4@EBF1!0.81!5.53!EBF1;;chr17:1958388..1958404,+!p1@HIC1!0.80!36.53!HIC1;;chr20:51588873..51588953,+!p1@TSHZ2!0.78!6.75!TSHZ2;;chr8:49833978..49833996,-!p1@SNAI2!0.77!111.75!SNAI2;;chr19:47523058..47523114,+!p1@NPAS1!0.77!4.91!NPAS1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.77!4.91!HOXC5;;chr9:4300050..4300118,-!p1@GLIS3!0.76!34.23!GLIS3;;chr5:158527139..158527161,-!p5@EBF1!0.76!4.76!EBF1;;chr1:119530493..119530572,-!p1@TBX15!0.75!4.61!TBX15;;chr8:22550982..22550999,-!p1@EGR3!0.73!13.35!EGR3;;chr9:16870659..16870675,-!p2@BNC2!0.72!5.37!BNC2;;chr6:85474299..85474324,-!p1@TBX18!0.71!7.83!TBX18;;chr4:299227..299272,-!p1@ZNF732!0.71!4.14!ZNF732;;chr2:169312600..169312606,+!p2@CERS6!0.70!6.75!CERS6;;chr7:27183291..27183324,-!p1@HOXA5!0.70!3.99!HOXA5;;chr17:41277372..41277418,-!p1@BRCA1!0.69!15.66!BRCA1;;chr9:16870710..16870763,-!p1@BNC2!0.69!7.21!BNC2;;chr11:46299199..46299233,+!p1@CREB3L1!0.68!22.41!CREB3L1;;chr10:114710244..114710257,+!p3@TCF7L2!0.67!11.05!TCF7L2;;chr8:106330656..106330684,+!p1@ZFPM2!0.67!10.75!ZFPM2;;chr11:46299539..46299620,+!p2@CREB3L1!0.67!6.60!CREB3L1;;chr16:1031762..1031781,+!p1@SOX8!0.67!3.68!SOX8;;chr1:40105299..40105326,-!p1@HEYL!0.67!3.68!HEYL;;chr2:121493425..121493474,+!p1@GLI2!0.64!8.29!GLI2;;chr14:61116168..61116180,-!p2@SIX1!0.64!3.99!SIX1;;chr1:170632250..170632277,+!p7@PRRX1!0.64!3.38!PRRX1;;chr2:239756671..239756732,+!p1@TWIST2!0.63!12.13!TWIST2;;chr17:61919985..61920012,-!p3@SMARCD2!0.63!9.06!SMARCD2;;chr6:45296048..45296082,+!p1@RUNX2!0.63!3.84!RUNX2;;chr7:27142290..27142310,-!p1@HOXA2!0.63!3.22!HOXA2;;chr7:27183263..27183284,-!p2@HOXA5!0.63!3.22!HOXA5;;chr12:54422217..54422239,+!p3@HOXC6!0.63!3.22!HOXC6;;chr9:16705069..16705086,-!p3@BNC2!0.63!3.22!BNC2;;chr20:30193083..30193098,+!p1@ID1!0.62!311.46!ID1;;chr2:239756739..239756755,+!p2@TWIST2!0.62!5.99!TWIST2;;chr14:62162258..62162269,+!p2@HIF1A!0.61!35.77!HIF1A;;chr17:59477233..59477263,+!p1@TBX2!0.61!11.05!TBX2;;chr15:37390374..37390422,-!p9@MEIS2!0.61!3.99!MEIS2;;chr2:45236579..45236596,-!p2@SIX2!0.61!3.07!SIX2;;chr3:147127142..147127168,+!p1@ZIC1!0.61!3.07!ZIC1;;chr1:61547894..61547968,+!p2@NFIA!0.60!10.13!NFIA;;chr21:36260773..36260804,-!p7@RUNX1!0.60!4.30!RUNX1;;chr1:170632959..170632987,+!p4@PRRX1!0.60!3.38!PRRX1;;chr14:62162285..62162296,+!p3@HIF1A!0.59!17.81!HIF1A;;chr1:8934931..8934947,-!p4@ENO1!0.59!11.21!ENO1;;chr2:19558373..19558392,-!p1@OSR1!0.59!9.06!OSR1;;chr9:16728327..16728338,-!p5@BNC2!0.59!2.92!BNC2;;chr9:14083467..14083483,-!p4@NFIB!0.58!7.98!NFIB;;chr19:22817119..22817145,+!p1@ZNF492!0.58!5.22!ZNF492;;chr11:113930291..113930339,+!p2@ZBTB16!0.58!5.07!ZBTB16;;chr17:46655704..46655718,-!p2@HOXB4!0.58!4.61!HOXB4;;chr11:125034605..125034636,+!p2@PKNOX2!0.58!2.76!PKNOX2;;chr12:66218420..66218439,+!p12@HMGA2!0.58!2.76!HMGA2;;chr18:22932080..22932170,-!p1@ZNF521!0.57!13.97!ZNF521;;chr3:21792585..21792625,-!p2@ZNF385D!0.57!3.07!ZNF385D;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.57!2.92!GLIS1;;chr12:2986206..2986258,-!p2@FOXM1!0.56!19.65!FOXM1;;chr17:46622070..46622109,-!p1@HOXB2!0.56!6.75!HOXB2;;chr1:23696308..23696339,-!p2@ZNF436!0.56!6.45!ZNF436;;chr1:23696348..23696363,-!p4@ZNF436!0.56!3.07!ZNF436;;chr11:125034640..125034655,+!p1@PKNOX2!0.56!2.61!PKNOX2;;chr2:102091144..102091183,-!p2@RFX8!0.56!2.61!RFX8;;chr7:27192185..27192209,-!p1@HOXA3!0.56!2.61!HOXA3;;chr8:77593750..77593757,+!p3@ZFHX4!0.56!2.61!ZFHX4;;chr15:96873984..96873999,+!p3@NR2F2!0.55!23.18!NR2F2;;chr20:42543441..42543497,+!p1@TOX2!0.55!14.12!TOX2;;chr9:14082760..14082775,-!p6@NFIB!0.55!4.76!NFIB;;chr19:13134772..13134822,+!p2@NFIX!0.55!4.14!NFIX;;chr9:16728161..16728185,-!p4@BNC2!0.54!2.46!BNC2;;chr1:119530857..119530884,-!p4@TBX15!0.54!2.46!TBX15;;chr5:176738887..176738934,-!p1@MXD3!0.53!19.96!MXD3;;chr19:20188776..20188826,+!p1@ZNF90!0.53!7.68!ZNF90;;chr17:41622765..41622821,-!p2@ETV4!0.53!3.99!ETV4;;chr1:8926441..8926473,-!p10@ENO1!0.53!3.99!ENO1;;chr3:126076264..126076305,-!p2@KLF15!0.53!3.68!KLF15;;chr6:85473156..85473210,-!p2@TBX18!0.53!3.07!TBX18;;chr6:34204672..34204692,+!p1@HMGA1!0.52!339.40!HMGA1;;chr15:37392724..37392757,-!p1@MEIS2!0.52!13.20!MEIS2;;chr1:158979872..158979898,+!p3@IFI16!0.52!8.75!IFI16;;chr3:24536253..24536328,-!p1@THRB!0.52!5.07!THRB;;chr12:66218378..66218401,+!p6@HMGA2!0.52!3.99!HMGA2;;chr9:132427972..132428056,+!p1@PRRX2!0.52!3.22!PRRX2;;chr9:132427883..132427951,+!p2@PRRX2!0.52!2.30!PRRX2;;chr2:102091566..102091581,-!p1@RFX8!0.52!2.30!RFX8;;chr2:119604456..119604501,-!p2@EN1!0.52!2.30!EN1;;chr12:54410948..54410992,+!p3@HOXC5!0.52!2.30!HOXC5;;chr11:65687362..65687436,+!p3@DRAP1!0.51!12.89!DRAP1;;chr21:36421535..36421610,-!p2@RUNX1!0.51!9.82!RUNX1;;chr9:73029219..73029289,-!p2@KLF9!0.51!8.29!KLF9;;chr20:50721803..50721857,-!p2@ZFP64!0.51!3.99!ZFP64;;chr19:23299814..23299844,+!p1@ZNF730!0.51!2.92!ZNF730;;chr1:158979792..158979814,+!p2@IFI16!0.50!27.32!IFI16;;chr12:3068544..3068597,+!p1@TEAD4!0.50!16.73!TEAD4;;chr2:214015111..214015179,-!p1@IKZF2!0.50!4.45!IKZF2;;chr8:128747661..128747703,+!p6@MYC!0.50!3.22!MYC;;chr17:46675420..46675465,-!p3@HOXB6!0.50!2.61!HOXB6;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!0.50!2.15!PEG3;;chr3:25470062..25470084,+!p4@RARB!0.50!2.15!RARB;;chr11:113930401..113930422,+!p3@ZBTB16!0.50!2.15!ZBTB16;;chr11:17741254..17741282,+!p2@MYOD1!0.50!2.15!MYOD1;;chr12:66358080..66358094,+!p15@HMGA2!0.50!2.15!HMGA2;;chr12:81110684..81110700,+!p1@MYF5!0.50!2.15!MYF5;;chr12:66218836..66218888,+!p1@HMGA2!0.49!26.10!HMGA2;;chr1:8926369..8926385,-!p12@ENO1!0.49!3.07!ENO1;;chr12:54447599..54447630,+!p3@HOXC4!0.49!2.76!HOXC4;;chr12:66218152..66218174,+!p10@HMGA2!0.49!2.30!HMGA2;;chr17:46622114..46622138,-!p4@HOXB2!0.48!3.53!HOXB2;;chr1:247171316..247171336,-!p3@ZNF695!0.48!3.38!ZNF695;;chr12:54402745..54402788,+!p1@HOXC8!0.48!2.00!HOXC8;;chr9:16871214..16871260,-!p11@BNC2!0.48!2.00!BNC2;;chr14:95236440..95236465,-!p1@GSC!0.48!2.00!GSC;;chr2:214014959..214015006,-!p4@IKZF2!0.48!2.00!IKZF2;;chr3:147111231..147111281,+!p3@ZIC1!0.48!2.00!ZIC1;;chr14:62162224..62162254,+!p1@HIF1A!0.47!388.67!HIF1A;;chr3:114343768..114343822,-!p1@ZBTB20!0.47!11.21!ZBTB20;;chr17:41623009..41623053,-!p4@ETV4!0.47!3.68!ETV4;;chr5:138609782..138609826,+!p5@MATR3!0.46!16.42!MATR3;;chr8:77593474..77593612,+!p1@ZFHX4!0.46!10.44!ZFHX4;;chr5:76383070..76383117,-!p3@ZBED3!0.46!4.61!ZBED3;;chr10:70320074..70320106,+!p1@TET1!0.46!4.61!TET1;;chr1:247171347..247171366,-!p2@ZNF695!0.46!4.14!ZNF695;;chr2:208030647..208030689,-!p1@KLF7!0.45!20.72!KLF7;;chr11:65686732..65686756,+!p2@DRAP1!0.45!10.28!DRAP1;;chr20:42543506..42543549,+!p2@TOX2!0.45!5.53!TOX2;;chr9:4300016..4300039,-!p2@GLIS3!0.45!3.68!GLIS3;;chr12:66218573..66218596,+!p7@HMGA2!0.45!3.07!HMGA2;;chr12:54394309..54394336,+!p2@HOXC9!0.45!1.84!HOXC9;;chr22:19748231..19748317,+!p1@TBX1!0.45!1.84!TBX1;;chr3:21792631..21792665,-!p3@ZNF385D!0.45!1.84!ZNF385D;;chr3:21792790..21792824,-!p4@ZNF385D!0.45!1.84!ZNF385D;;chr1:170633194..170633205,+!p18@PRRX1!0.45!1.84!PRRX1;;chr20:42295713..42295738,+!p2@MYBL2!0.44!14.28!MYBL2;;chr2:239148671..239148686,-!p1@HES6!0.44!8.44!HES6;;chr6:126240380..126240430,+!p2@NCOA7!0.44!5.83!NCOA7;;chr14:24837368..24837401,+!p1@NFATC4!0.44!5.22!NFATC4;;chr16:8962202..8962222,-!p3@CARHSP1!0.44!3.68!CARHSP1;;chr12:66218443..66218461,+!p8@HMGA2!0.44!2.46!HMGA2;;chr1:8938766..8938774,-!p2@ENO1!0.43!167.47!ENO1;;chr9:73028814..73028895,-!p1@KLF9!0.43!23.79!KLF9;;chr6:31126291..31126399,+!p1@TCF19!0.43!22.87!TCF19;;chr12:7079780..7079791,-!p2@PHB2!0.43!12.28!PHB2;;chr1:47779762..47779827,-!p1@STIL,p1@TAL1!0.43!10.44!TAL1;;chr6:45390025..45390076,+!p2@RUNX2!0.43!5.22!RUNX2;;chr4:206390..206444,+!p1@ZNF876P!0.43!3.68!ZNF876P;;chr14:62213827..62213853,+!p6@HIF1A!0.43!2.76!HIF1A;;chr5:72743793..72743855,-!p4@FOXD1!0.43!2.15!FOXD1;;chr11:46299186..46299195,+!p3@CREB3L1!0.43!2.00!CREB3L1;;chr12:54393880..54393962,+!p1@HOXC9!0.43!1.69!HOXC9;;chr5:158524625..158524669,-!p6@EBF1!0.43!1.69!EBF1;;chr7:27205136..27205164,-!p1@HOXA9!0.43!1.69!HOXA9;;chr2:24714729..24714761,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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000056;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000187;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000188;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002385
 |ffid_belonging_in_development=CL:0000355,CL:0000222
 |fonse_cell_line=
@@ Line 41: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Skeletal%2520Muscle%2520Cells%252c%2520donor5.CNhs12056.11455-119A6.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Skeletal%2520Muscle%2520Cells%252c%2520donor5.CNhs12056.11455-119A6.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Skeletal%2520Muscle%2520Cells%252c%2520donor5.CNhs12056.11455-119A6.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Skeletal%2520Muscle%2520Cells%252c%2520donor5.CNhs12056.11455-119A6.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Skeletal%2520Muscle%2520Cells%252c%2520donor5.CNhs12056.11455-119A6.hg38.nobarcode.ctss.bed.gz
 |id=FF:11455-119A6
 |is_a=EFO:0002091;;FF:0000162
@@ Line 46: / Line 52: @@
 |library_id=CNhs12056
 |library_id_phase_based=2:CNhs12056
-|name="Skeletal Muscle Cells, donor5"
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11455
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11455
+|name=Skeletal Muscle Cells, donor5
 |namespace=FANTOM5
 |part_of=
 |profile_cagescan=,,,
-|profile_hcage="CNhs12056,LSID838,release011,COMPLETED"
+|profile_hcage=CNhs12056,LSID838,release011,COMPLETED
 |profile_rnaseq=
-|profile_srnaseq=",,,"
+|profile_srnaseq=,,,
+|refex=http://refex.dbcls.jp/genelist.php?lang
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@@ Line 90: / Line 101: @@
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11455-119A6;search_select_hide=table117:FF:11455-119A6
 }}

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FF:11455-119A6: Difference between revisions

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Latest revision as of 18:02, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0