FF:10011-101C2: Difference between revisions

Latest revision as of 12:13, 3 June 2020

Name:	bladder, adult, pool1
Species:	Human (Homo sapiens)
Library ID:	CNhs10616
Sample type:	tissues
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	bladder
dev stage	55,58,79 years old adult
sex	mixed
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	Ambion
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	0910061 -2
catalog number	Cat:AM6000 Lot:0910061 -2
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-ToTALLY-RNA-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005257

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs10616		CAGE		DRX008622		DRR009494

Accession ID Hg19

Library id		BAM		CTSS
CNhs10616		DRZ000919		DRZ002304

Accession ID Hg38

Library id		BAM		CTSS
CNhs10616		DRZ012269		DRZ013654

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0939
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.368
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0.276
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.113
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.0409
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.144
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.0782
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.233
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0.0409
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0.0409
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.0387
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.144
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0.00821
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.202
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.497
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0.804
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0.0409
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.23
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.174
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0.144
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0.0782
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0.0409
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.439
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0.0409
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.235
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.209
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.159
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.0409
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.0409
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0.113
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.00409
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.607
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.223
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.174
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.202
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0.0409
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.0782
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.202
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.0358
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.0409
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.113
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	1.044
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0.0409
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0.0782
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0.919
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.138
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.0782
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0.0782
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.144
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0.0409
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10616

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.104
MA0003.1	MA0003.1	0.215
MA0004.1	MA0004.1	0.0441
MA0006.1	MA0006.1	0.557
MA0007.1	MA0007.1	0.49
MA0009.1	MA0009.1	0.351
MA0014.1	MA0014.1	0.226
MA0017.1	MA0017.1	0.54
MA0018.2	MA0018.2	0.975
MA0019.1	MA0019.1	0.0111
MA0024.1	MA0024.1	0.00769
MA0025.1	MA0025.1	0.526
MA0027.1	MA0027.1	0.555
MA0028.1	MA0028.1	1.04763e-8
MA0029.1	MA0029.1	0.126
MA0030.1	MA0030.1	1.99526e-4
MA0031.1	MA0031.1	0.00289
MA0035.2	MA0035.2	0.49
MA0038.1	MA0038.1	0.837
MA0039.2	MA0039.2	0.538
MA0040.1	MA0040.1	0.297
MA0041.1	MA0041.1	0.253
MA0042.1	MA0042.1	0.471
MA0043.1	MA0043.1	0.191
MA0046.1	MA0046.1	0.0816
MA0047.2	MA0047.2	0.0112
MA0048.1	MA0048.1	0.0297
MA0050.1	MA0050.1	0.993
MA0051.1	MA0051.1	0.332
MA0052.1	MA0052.1	5.69579e-4
MA0055.1	MA0055.1	4.97869e-5
MA0057.1	MA0057.1	0.983
MA0058.1	MA0058.1	0.0105
MA0059.1	MA0059.1	0.00138
MA0060.1	MA0060.1	0.00367
MA0061.1	MA0061.1	0.0175
MA0062.2	MA0062.2	1.24457e-12
MA0065.2	MA0065.2	0.189
MA0066.1	MA0066.1	0.0407
MA0067.1	MA0067.1	0.325
MA0068.1	MA0068.1	0.00755
MA0069.1	MA0069.1	0.761
MA0070.1	MA0070.1	0.115
MA0071.1	MA0071.1	0.0447
MA0072.1	MA0072.1	0.11
MA0073.1	MA0073.1	0.649
MA0074.1	MA0074.1	0.715
MA0076.1	MA0076.1	1.30832e-10
MA0077.1	MA0077.1	0.217
MA0078.1	MA0078.1	0.177
MA0079.2	MA0079.2	0.528
MA0080.2	MA0080.2	0.188
MA0081.1	MA0081.1	0.127
MA0083.1	MA0083.1	9.23297e-13
MA0084.1	MA0084.1	0.59
MA0087.1	MA0087.1	0.386
MA0088.1	MA0088.1	0.0177
MA0090.1	MA0090.1	0.0577
MA0091.1	MA0091.1	0.221
MA0092.1	MA0092.1	0.145
MA0093.1	MA0093.1	0.0287
MA0099.2	MA0099.2	3.57471e-11
MA0100.1	MA0100.1	0.0567
MA0101.1	MA0101.1	0.0362
MA0102.2	MA0102.2	0.603
MA0103.1	MA0103.1	0.722
MA0104.2	MA0104.2	0.00114
MA0105.1	MA0105.1	2.77797e-4
MA0106.1	MA0106.1	0.19
MA0107.1	MA0107.1	0.037
MA0108.2	MA0108.2	2.2171e-21
MA0111.1	MA0111.1	0.425
MA0112.2	MA0112.2	0.389
MA0113.1	MA0113.1	0.824
MA0114.1	MA0114.1	0.0685
MA0115.1	MA0115.1	0.0723
MA0116.1	MA0116.1	0.00514
MA0117.1	MA0117.1	0.649
MA0119.1	MA0119.1	0.686
MA0122.1	MA0122.1	0.408
MA0124.1	MA0124.1	0.505
MA0125.1	MA0125.1	0.951
MA0131.1	MA0131.1	0.0902
MA0135.1	MA0135.1	0.969
MA0136.1	MA0136.1	0.00104
MA0137.2	MA0137.2	0.171
MA0138.2	MA0138.2	0.329
MA0139.1	MA0139.1	0.287
MA0140.1	MA0140.1	0.224
MA0141.1	MA0141.1	0.0143
MA0142.1	MA0142.1	0.224
MA0143.1	MA0143.1	0.563
MA0144.1	MA0144.1	0.298
MA0145.1	MA0145.1	0.0389
MA0146.1	MA0146.1	0.15
MA0147.1	MA0147.1	6.18225e-4
MA0148.1	MA0148.1	0.00611
MA0149.1	MA0149.1	0.0414
MA0150.1	MA0150.1	0.0143
MA0152.1	MA0152.1	0.844
MA0153.1	MA0153.1	0.194
MA0154.1	MA0154.1	0.476
MA0155.1	MA0155.1	0.617
MA0156.1	MA0156.1	1.86021e-5
MA0157.1	MA0157.1	0.147
MA0159.1	MA0159.1	0.373
MA0160.1	MA0160.1	0.108
MA0162.1	MA0162.1	0.784
MA0163.1	MA0163.1	3.65915e-6
MA0164.1	MA0164.1	0.246
MA0258.1	MA0258.1	0.112
MA0259.1	MA0259.1	0.082

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10616

Novel motif	Logo	P-value
1	1	0.0519
10	10	0.0728
100	100	0.064
101	101	0.764
102	102	0.235
103	103	0.369
104	104	0.742
105	105	0.599
106	106	0.514
107	107	0.0297
108	108	0.513
109	109	0.0243
11	11	0.149
110	110	0.218
111	111	0.035
112	112	0.947
113	113	0.267
114	114	0.0681
115	115	0.312
116	116	0.856
117	117	0.028
118	118	0.0443
119	119	0.769
12	12	0.415
120	120	0.00775
121	121	0.911
122	122	0.927
123	123	8.85005e-4
124	124	0.593
125	125	0.327
126	126	0.559
127	127	0.48
128	128	0.168
129	129	0.319
13	13	0.0331
130	130	0.773
131	131	0.0587
132	132	0.0838
133	133	0.0024
134	134	0.0714
135	135	0.0102
136	136	0.253
137	137	0.512
138	138	0.842
139	139	0.815
14	14	0.884
140	140	0.561
141	141	0.598
142	142	0.963
143	143	0.124
144	144	0.936
145	145	0.834
146	146	0.947
147	147	0.454
148	148	0.703
149	149	0.183
15	15	0.0425
150	150	0.828
151	151	0.939
152	152	0.866
153	153	0.219
154	154	0.798
155	155	0.381
156	156	0.519
157	157	0.954
158	158	0.662
159	159	0.917
16	16	0.513
160	160	0.971
161	161	0.23
162	162	0.88
163	163	0.761
164	164	0.00435
165	165	0.686
166	166	0.188
167	167	0.0536
168	168	0.227
169	169	0.791
17	17	0.863
18	18	0.154
19	19	0.189
2	2	0.0149
20	20	0.0235
21	21	0.375
22	22	0.65
23	23	0.112
24	24	0.495
25	25	0.34
26	26	0.0331
27	27	0.603
28	28	0.486
29	29	0.00241
3	3	0.285
30	30	0.0229
31	31	0.826
32	32	0.611
33	33	0.0928
34	34	0.338
35	35	0.331
36	36	0.0125
37	37	0.181
38	38	0.691
39	39	0.166
4	4	0.0498
40	40	0.0277
41	41	0.112
42	42	0.296
43	43	0.509
44	44	0.988
45	45	0.149
46	46	0.389
47	47	0.131
48	48	0.253
49	49	0.366
5	5	0.715
50	50	0.516
51	51	0.799
52	52	0.0927
53	53	0.898
54	54	0.856
55	55	0.765
56	56	0.876
57	57	0.156
58	58	0.918
59	59	0.726
6	6	0.373
60	60	0.596
61	61	0.465
62	62	0.697
63	63	0.61
64	64	0.29
65	65	0.934
66	66	0.00545
67	67	0.482
68	68	0.389
69	69	0.759
7	7	0.277
70	70	0.312
71	71	0.0842
72	72	0.703
73	73	0.0311
74	74	0.895
75	75	0.00718
76	76	0.0268
77	77	0.173
78	78	0.374
79	79	0.499
8	8	0.32
80	80	0.432
81	81	0.806
82	82	0.996
83	83	0.21
84	84	0.857
85	85	0.459
86	86	0.777
87	87	0.0316
88	88	0.778
89	89	0.623
9	9	0.307
90	90	0.219
91	91	0.0234
92	92	0.412
93	93	0.0109
94	94	0.0685
95	95	4.73561e-4
96	96	0.835
97	97	0.905
98	98	0.112
99	99	0.429

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs10616

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0010011 human bladder - adult sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0001255 (urinary bladder)
0002100 (trunk)
0000479 (tissue)
0004119 (endoderm-derived structure)
0000466 (immaterial anatomical entity)
0002075 (viscus)
0000062 (organ)
0000475 (organism subdivision)
0004120 (mesoderm-derived structure)
0000077 (mixed endoderm/mesoderm-derived structure)
0006554 (urinary system structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0002553 (anatomical cavity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0002323 (body cavity)
0000489 (cavitated compound organ)
0005177 (trunk region element)
0000464 (anatomical space)
0004458 (body cavity or lining)
0010317 (germ layer / neural crest derived structure)
0001556 (lower urinary tract)
0001008 (renal system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010011 (human bladder - adult sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0006603 (presumptive mesoderm)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
 |DRA_sample_Accession=CAGE@SAMD00005257
-|accession_numbers=CAGE;DRX008622;DRR009494;DRZ000919;DRZ002304
+|accession_numbers=CAGE;DRX008622;DRR009494;DRZ000919;DRZ002304;DRZ012269;DRZ013654
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0001255,UBERON:0002100,UBERON:0000479,UBERON:0004119,UBERON:0000466,UBERON:0002075,UBERON:0000062,UBERON:0000475,UBERON:0004120,UBERON:0000077,UBERON:0006554,UBERON:0000061,UBERON:0000465,UBERON:0002553,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0002323,UBERON:0000489,UBERON:0005177,UBERON:0000464,UBERON:0004458,UBERON:0010317,UBERON:0001556,UBERON:0001008
 |ancestors_in_cell_lineage_facet=
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|data_phase=1
+|data_phase=2
-|datafreeze_phase=1
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr16:86544113..86544145,+!p1@FOXF1!2.02!127.15!FOXF1;;chr19:46801639..46801699,+!p1@HIF3A!1.91!79.90!HIF3A;;chr7:35293685..35293718,-!p1@TBX20!1.91!79.41!TBX20;;chr2:19558373..19558392,-!p1@OSR1!1.86!190.38!OSR1;;chr6:134210243..134210257,+!p1@TCF21!1.85!69.15!TCF21;;chr3:12330560..12330579,+!p1@PPARG!1.78!67.18!PPARG;;chr1:201979703..201979721,+!p2@ELF3!1.76!57.02!ELF3;;chr11:34642612..34642646,+!p1@EHF!1.72!52.08!EHF;;chr4:174451370..174451387,-!p1@HAND2!1.65!43.90!HAND2;;chr6:1312325..1312340,+!p1@FOXQ1!1.59!60.37!FOXQ1;;chr5:134369879..134369898,-!p2@PITX1!1.57!36.20!PITX1;;chr12:52445218..52445237,+!p1@NR4A1!1.55!413.61!NR4A1;;chr1:201979743..201979762,+!p1@ELF3!1.53!32.75!ELF3;;chr17:53342311..53342400,+!p1@HLF!1.50!34.62!HLF;;chr16:85932760..85932775,+!p1@IRF8!1.50!30.48!IRF8;;chr1:61548374..61548415,+!p4@NFIA!1.49!55.04!NFIA;;chr12:52437488..52437507,+!p2@NR4A1!1.47!28.41!NR4A1;;chr8:55370487..55370503,+!p1@SOX17!1.45!27.23!SOX17;;chr20:62680984..62680999,-!p1@SOX18!1.42!33.24!SOX18;;chr4:174450089..174450153,-!p2@HAND2!1.42!25.35!HAND2;;chr11:113930425..113930471,+!p1@ZBTB16!1.40!34.53!ZBTB16;;chr21:39870339..39870443,-!p1@ERG!1.39!23.38!ERG;;chr5:134369905..134369972,-!p1@PITX1!1.36!32.95!PITX1;;chr7:27224842..27224872,-!p1@HOXA11!1.34!20.91!HOXA11;;chr19:54041669..54041697,+!p2@ZNF331!1.33!20.22!ZNF331;;chr17:59529743..59529798,+!p1@TBX4!1.30!18.94!TBX4;;chr1:170632285..170632309,+!p1@PRRX1!1.29!21.01!PRRX1;;chr1:209979467..209979494,-!p1@IRF6!1.27!19.73!IRF6;;chr11:47400078..47400106,-!p1@SPI1!1.27!17.66!SPI1;;chr7:44143925..44143970,+!p1@AEBP1!1.26!371.49!AEBP1;;chr18:53068911..53068935,-!p4@TCF4!1.26!19.43!TCF4;;chr10:8096631..8096660,+!p1@GATA3!1.25!20.22!GATA3;;chr6:391743..391759,+!p1@IRF4!1.25!16.67!IRF4;;chr3:128212033..128212051,-!p1@GATA2!1.24!16.57!GATA2;;chr1:40105299..40105326,-!p1@HEYL!1.23!16.18!HEYL;;chr18:19749541..19749557,+!p1@GATA6!1.22!49.03!GATA6;;chr11:113930291..113930339,+!p2@ZBTB16!1.22!25.65!ZBTB16;;chr17:38256822..38256851,-!p1@NR1D1!1.21!118.67!NR1D1;;chr1:61548069..61548102,+!p3@NFIA!1.21!36.50!NFIA;;chr22:38380543..38380569,-!p1@SOX10!1.20!14.99!SOX10;;chr7:27192185..27192209,-!p1@HOXA3!1.20!14.99!HOXA3;;chr7:27224795..27224840,-!p2@HOXA11!1.20!14.99!HOXA11;;chr12:26277956..26277980,-!p1@BHLHE41!1.19!51.69!BHLHE41;;chr17:7492684..7492778,-!p2@SOX15!1.19!30.28!SOX15;;chr8:10588010..10588030,-!p1@SOX7!1.19!14.60!SOX7;;chr11:12696579..12696611,+!p4@TEAD1!1.19!14.40!TEAD1;;chr19:54058073..54058088,+!p1@ZNF331!1.18!14.20!ZNF331;;chr20:61051039..61051057,-!p1@GATA5!1.18!14.11!GATA5;;chr7:15726296..15726315,-!p1@MEOX2!1.18!14.01!MEOX2;;chr1:164528410..164528428,+!p1@PBX1!1.17!103.67!PBX1;;chr1:61547894..61547968,+!p2@NFIA!1.17!39.56!NFIA;;chr15:42749722..42749739,-!p2@ZFP106!1.16!24.36!ZFP106;;chr4:81118647..81118666,+!p1@PRDM8!1.16!17.85!PRDM8;;chr3:126076242..126076257,-!p1@KLF15!1.16!16.97!KLF15;;chr11:111249993..111250006,-!p1@POU2AF1!1.16!13.61!POU2AF1;;chr3:141151009..141151033,+!p10@ZBTB38!1.15!13.22!ZBTB38;;chr4:111544219..111544240,-!p1@PITX2!1.15!13.02!PITX2;;chrX:106960285..106960299,-!p1@TSC22D3!1.11!318.72!TSC22D3;;chr20:51588873..51588953,+!p1@TSHZ2!1.11!15.59!TSHZ2;;chr3:169381420..169381535,-!p1@MECOM!1.11!14.01!MECOM;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.11!11.94!PEG3;;chr11:113930401..113930422,+!p3@ZBTB16!1.11!11.74!ZBTB16;;chr9:102584159..102584174,+!p2@NR4A3!1.10!21.01!NR4A3;;chr2:145277882..145277967,-!p3@ZEB2!1.09!19.83!ZEB2;;chr12:26277817..26277863,-!p2@BHLHE41!1.09!15.49!BHLHE41;;chr1:61548225..61548299,+!p1@NFIA!1.08!146.09!NFIA;;chr18:19749386..19749404,+!p2@GATA6!1.08!15.68!GATA6;;chr5:88178983..88179012,-!p1@MEF2C!1.07!83.85!MEF2C;;chr2:157189180..157189290,-!p1@NR4A2!1.07!56.42!NR4A2;;chr16:79634624..79634642,-!p1@MAF!1.07!43.11!MAF;;chr7:44143978..44143989,+!p2@AEBP1!1.07!19.83!AEBP1;;chr16:79634595..79634620,-!p2@MAF!1.07!19.63!MAF;;chr7:114054885..114054910,+!p4@FOXP2!1.07!10.75!FOXP2;;chr7:27213893..27213954,-!p1@HOXA10!1.07!10.65!HOXA10;;chr4:174451350..174451363,-!p3@HAND2!1.07!10.65!HAND2;;chr8:106330656..106330684,+!p1@ZFPM2!1.06!27.62!ZFPM2;;chr7:27239740..27239759,-!p2@HOXA13!1.06!10.55!HOXA13;;chr7:63505799..63505904,+!p1@ZNF727!1.06!10.46!ZNF727;;chr3:71294213..71294240,-!p30@FOXP1!1.06!10.36!FOXP1;;chr7:15726243..15726293,-!p2@MEOX2!1.05!10.16!MEOX2;;chr9:73028814..73028895,-!p1@KLF9!1.04!100.32!KLF9;;chr6:19837592..19837621,+!p1@ID4!1.04!61.85!ID4;;chr17:59477233..59477263,+!p1@TBX2!1.04!30.97!TBX2;;chr1:44513995..44514031,+!p1@KLF17!1.04!10.06!KLF17;;chr19:16435625..16435682,+!p1@KLF2!1.03!313.98!KLF2;;chr3:69788576..69788648,+!p1@MITF!1.03!52.68!MITF;;chr17:38256799..38256815,-!p3@NR1D1!1.03!17.95!NR1D1;;chr12:80085061..80085119,-!p6@PAWR!1.03!15.59!PAWR;;chr6:1389789..1389821,+!p1@FOXF2!1.03!13.51!FOXF2;;chr16:67198633..67198671,+!p1@HSF4!1.03!9.77!HSF4;;chr3:141150883..141150961,+!p6@ZBTB38!1.03!9.67!ZBTB38;;chr13:73633131..73633149,+!p1@KLF5!1.02!103.08!KLF5;;chr5:122424918..122424944,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FOXC2!0.36!4.44!FOXC2;;chr12:56401268..56401305,+!p1@IKZF4!0.36!3.65!IKZF4;;chr19:15560730..15560772,-!p3@WIZ!0.36!3.55!WIZ;;chr4:146402843..146402864,+!p3@SMAD1!0.36!3.35!SMAD1;;chr11:8102749..8102769,+!p2@TUB!0.36!3.26!TUB;;chr2:145282041..145282092,-!p8@ZEB2!0.36!2.37!ZEB2;;chr14:33408072..33408114,+!p2@NPAS3!0.36!1.68!NPAS3;;chr10:28032421..28032494,-!p2@MKX!0.36!1.28!MKX;;chr10:28034772..28034783,-!p4@MKX!0.36!1.28!MKX;;chr12:104531768..104531782,-!p7@NFYB!0.36!1.28!NFYB;;chr12:114843816..114843832,-!p4@TBX5!0.36!1.28!TBX5;;chr12:115122262..115122271,-!p7@TBX3!0.36!1.28!TBX3;;chr13:37494306..37494324,-!p4@SMAD9!0.36!1.28!SMAD9;;chr2:100758991..100759009,-!p3@AFF3!0.36!1.28!AFF3;;chr2:176981499..176981522,+!p2@HOXD10!0.36!1.28!HOXD10;;chr4:146401920..146401926,+!p14@SMAD1!0.36!1.28!SMAD1;;chr4:149363475..149363492,-!p2@NR3C2!0.36!1.28!NR3C2;;chr4:87857538..87857549,+!p19@AFF1!0.36!1.28!AFF1;;chr9:22447422..22447483,+!p1@DMRTA1!0.36!1.28!DMRTA1;;chr9:14314642..14314645,-!p16@NFIB!0.36!1.28!NFIB;;chrX:24167086..24167111,+!p4@ZFX!0.36!1.28!ZFX;;chr17:38256872..38256874,-!p10@NR1D1!0.36!1.28!NR1D1;;chr17:46675558..46675577,-!p2@HOXB6!0.36!1.28!HOXB6;;chr17:46690839..46690884,-!p1@HOXB8!0.36!1.28!HOXB8;;chr18:53089493..53089517,-!p15@TCF4!0.36!1.28!TCF4;;chr19:16435735..16435773,+!p4@KLF2!0.36!1.28!KLF2;;chr19:19281060..19281078,-!p2@MEF2BNB-MEF2B,p2@MEF2B!0.36!1.28!MEF2B;;chr19:24216347..24216356,+!p7@ZNF254!0.36!1.28!ZNF254;;chr5:158527104..158527135,-!p4@EBF1!0.36!1.28!EBF1;;chr5:174151648..174151659,+!p3@MSX2!0.36!1.28!MSX2;;chr8:93074803..93074845,-!p1@RUNX1T1!0.36!1.28!RUNX1T1;;chr8:93107855..93107901,-!p12@RUNX1T1!0.36!1.28!RUNX1T1;;chr1:158969727..158969749,+!p11@IFI16!0.36!1.28!IFI16;;chr1:61547405..61547434,+!p11@NFIA!0.36!1.28!NFIA;;chr1:61869752..61869782,+!p13@NFIA!0.36!1.28!NFIA;;chrX:77041685..77041716,-!p1@ATRX!0.35!57.31!ATRX;;chr5:132299210..132299228,-!p3@AFF4!0.35!23.18!AFF4;;chr17:36861496..36861586,+!p1@MLLT6!0.35!19.04!MLLT6;;chr7:28725740..28725778,+!p1@CREB5!0.35!17.56!CREB5;;chr12:80084768..80084821,-!p2@PAWR!0.35!13.51!PAWR;;chr5:178286925..178287007,+!p1@ZNF354B!0.35!10.85!ZNF354B;;chr19:35225121..35225175,+!p1@ZNF181!0.35!10.75!ZNF181;;chr19:21512202..21512225,-!p1@ZNF708!0.35!9.86!ZNF708;;chr9:117160738..117160782,-!p2@AKNA!0.35!7.79!AKNA;;chr19:44598498..44598529,+!p1@ZNF224!0.35!5.72!ZNF224;;chr9:3525910..3525955,-!p4@RFX3!0.35!5.43!RFX3;;chr8:123794102..123794160,+!p3@ZHX2!0.35!4.83!ZHX2;;chr9:137218362..137218385,+!p4@RXRA!0.35!4.64!RXRA;;chr15:67357992..67358009,+!p3@SMAD3!0.35!4.24!SMAD3;;chr1:91487836..91487854,-!p3@ZNF644!0.35!3.95!ZNF644;;chr7:150946015..150946070,-!p3@SMARCD3!0.35!3.65!SMARCD3;;chr17:38219184..38219195,+!p3@THRA!0.35!3.26!THRA;;chr19:12405689..12405707,-!p3@ZNF44!0.35!3.26!ZNF44;;chr8:60031682..60031710,-!p2@TOX!0.35!2.56!TOX;;chr9:110252074..110252079,-!p3@KLF4!0.35!2.56!KLF4;;chr19:53496768..53496799,-!p1@ZNF702P!0.35!2.37!ZNF702P;;chr19:12444519..12444537,-!p3@ZNF563!0.35!2.37!ZNF563;;chr19:13213662..13213686,-!p1@LYL1!0.35!2.27!LYL1;;chr3:44754176..44754196,+!p2@ZNF502!0.35!2.07!ZNF502;;chr19:49140595..49140607,-!p3@DBP!0.35!2.07!DBP;;chr18:48556573..48556640,+!p1@SMAD4!0.34!111.57!SMAD4;;chr11:10879593..10879620,-!p1@ZBED5!0.34!61.16!ZBED5;;chr10:22292613..22292674,-!p1@DNAJC1!0.34!58.00!DNAJC1;;chr1:14075903..14075940,+!p1@PRDM2!0.34!42.61!PRDM2;;chr7:111846741..111846776,+!p1@ZNF277!0.34!40.15!ZNF277;;chr10:63661437..63661465,+!p2@ARID5B!0.34!37.19!ARID5B;;
+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000161;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001008;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001353;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001556;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002075;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002323;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004122
 |ffid_belonging_in_development=UBERON:0002532,UBERON:0006595,UBERON:0006603,UBERON:0010316
 |fonse_cell_line=
@@ Line 41: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/bladder%252c%2520adult%252c%2520pool1.CNhs10616.10011-101C2.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/bladder%252c%2520adult%252c%2520pool1.CNhs10616.10011-101C2.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/bladder%252c%2520adult%252c%2520pool1.CNhs10616.10011-101C2.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/bladder%252c%2520adult%252c%2520pool1.CNhs10616.10011-101C2.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/bladder%252c%2520adult%252c%2520pool1.CNhs10616.10011-101C2.hg38.nobarcode.ctss.bed.gz
 |id=FF:10011-101C2
 |is_a=EFO:0002091;;FF:0010011
 |is_obsolete=
 |library_id=CNhs10616
-|library_id_phase_based=1:CNhs10616
+|library_id_phase_based=2:CNhs10616
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10011
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10011
 |name=bladder, adult, pool1
 |namespace=FANTOM5
@@ Line 51: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs10616,LSID656,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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@@ Line 90: / Line 101: @@
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10011-101C2;search_select_hide=table117:FF:10011-101C2
 }}

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FF:10011-101C2: Difference between revisions

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Latest revision as of 12:13, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0