FF:11573-120E7: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@ | |DRA_sample_Accession=CAGE@SAMD00004872 | ||
|accession_numbers=CAGE;DRX008342;DRR009214;DRZ000639;DRZ002024 | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004872 | ||
|accession_numbers=CAGE;DRX008342;DRR009214;DRZ000639;DRZ002024;DRZ011989;DRZ013374 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037002;DRR041368;DRZ007010 | |||
|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062,UBERON:0000119,UBERON:0003210 | |ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062,UBERON:0000119,UBERON:0003210 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000151,CL:0002320,CL:0002371,CL:0000499,CL:0000327,CL:0000255,CL:0000708 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000151,CL:0002320,CL:0002371,CL:0000499,CL:0000327,CL:0000255,CL:0000708 | ||
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|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
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ATA6;;chr19:58874112..58874125,-!p1@ZNF497,p5@A1BG!0.22!1.31!ZNF497;;chr12:125002827..125002855,-!p5@NCOR2!0.22!1.31!NCOR2;;chr4:146859887..146859921,-!p3@ZNF827!0.22!1.31!ZNF827;;chr3:170076223..170076242,+!p6@SKIL!0.22!0.87!SKIL;;chr1:170632285..170632309,+!p1@PRRX1!0.22!0.87!PRRX1;;chr17:38504601..38504634,+!p9@RARA!0.22!0.87!RARA;;chr18:53068911..53068935,-!p4@TCF4!0.22!0.87!TCF4;;chr19:19303794..19303805,+!p5@RFXANK!0.22!0.87!RFXANK;;chr9:99180597..99180614,-!p3@ZNF367!0.22!0.87!ZNF367;;chr1:202777535..202777556,-!p1@KDM5B!0.21!49.26!KDM5B;;chr20:44718538..44718612,-!p1@NCOA5!0.21!39.67!NCOA5;;chr1:8877692..8877732,-!p1@RERE!0.21!11.33!RERE;;chr2:60780753..60780800,-!p1@BCL11A!0.21!6.54!BCL11A;;chr7:26191809..26191890,+!p1@NFE2L3!0.21!6.54!NFE2L3;;chr17:47492252..47492265,-!p2@PHB!0.21!5.23!PHB;;chr4:38665883..38665922,+!p3@KLF3!0.21!4.80!KLF3;;chr2:27357446..27357475,-!p2@PREB!0.21!4.36!PREB;;chr14:73360799..73360817,-!p1@DPF3!0.21!4.36!DPF3;;chr2:239756671..239756732,+!p1@TWIST2!0.21!3.92!TWIST2;;chr6:144289132..144289134,-!p3@PLAGL1!0.21!2.62!PLAGL1;;chr13:74708372..74708409,-!p4@KLF12!0.21!2.62!KLF12;;chr4:95128841..95128865,+!p4@SMARCAD1!0.21!2.18!SMARCAD1;;chr13:37494365..37494381,-!p1@SMAD9!0.21!1.74!SMAD9;;chrX:84499081..84499115,+!p2@ZNF711!0.21!1.31!ZNF711;;chr8:128752771..128752843,+!p9@MYC!0.21!1.31!MYC;;chr15:96869292..96869320,+!p15@NR2F2!0.21!1.31!NR2F2;;chr16:67063262..67063273,+!p7@CBFB!0.21!0.87!CBFB;;chr10:21823296..21823309,+!p8@MLLT10!0.21!0.87!MLLT10;;chr2:28616312..28616315,+!p8@FOSL2!0.21!0.87!FOSL2;;chr1:164528687..164528711,+!p6@PBX1!0.21!0.87!PBX1;;chrX:107019163..107019179,-!p7@TSC22D3!0.21!0.87!TSC22D3;;chr11:65686855..65686946,+!p1@DRAP1!0.20!108.12!DRAP1;;chr11:57103327..57103372,-!p1@SSRP1!0.20!67.14!SSRP1;;chr7:4721885..4721945,+!p1@FOXK1!0.20!43.60!FOXK1;;chr10:22292613..22292674,-!p1@DNAJC1!0.20!41.85!DNAJC1;;chr9:137218281..137218340,+!p1@RXRA!0.20!40.54!RXRA;;chr20:62601243..62601291,-!p1@ZNF512B!0.20!13.51!ZNF512B;;chr1:157108180..157108193,-!p2@ETV3!0.20!6.98!ETV3;;chr15:85144229..85144273,+!p1@ZSCAN2!0.20!6.98!ZSCAN2;;chr10:35484804..35484902,+!p2@CREM!0.20!4.80!CREM;;chr6:43337180..43337244,-!p1@ZNF318!0.20!4.80!ZNF318;;chr17:38498402..38498445,+!p3@RARA!0.20!4.36!RARA;;chr8:146012660..146012711,-!p1@ZNF34!0.20!3.92!ZNF34;;chr19:58838369..58838439,+!p1@ZSCAN22!0.20!3.92!ZSCAN22;;chr18:74207147..74207183,-!p1@ZNF516!0.20!3.49!ZNF516;;chr15:100106244..100106259,+!p2@MEF2A!0.20!2.62!MEF2A;;chr15:66994561..66994597,+!p2@SMAD6!0.20!2.62!SMAD6;;chr1:935398..935465,-!p2@HES4!0.20!2.18!HES4;;chr11:47270436..47270464,+!p2@NR1H3!0.20!2.18!NR1H3;;chr12:72058102..72058127,+!p7@THAP2!0.20!1.74!THAP2;;chr5:178368186..178368238,+!p1@ZNF454!0.20!1.74!ZNF454;;chr19:58570605..58570655,+!p1@ZNF135!0.20!1.74!ZNF135;;chr19:4066763..4066779,-!p5@ZBTB7A!0.20!1.31!ZBTB7A;;chr17:41622925..41622976,-!p3@ETV4!0.20!1.31!ETV4;;chr19:3366625..3366629,+!p4@NFIC!0.20!1.31!NFIC;;chr22:42269885..42269899,+!p4@SREBF2!0.20!1.31!SREBF2;;chr19:12175573..12175584,+!p3@ZNF844!0.20!0.87!ZNF844;;chr10:64134120..64134183,+!p1@ZNF365!0.20!0.87!ZNF365;;chr12:26278008..26278024,-!p4@BHLHE41!0.20!0.87!BHLHE41;;chr14:33408072..33408114,+!p2@NPAS3!0.20!0.87!NPAS3;;chr19:47425425..47425441,+!p2@ARHGAP35!0.20!0.87!ARHGAP35;;chr1:150849208..150849217,-!p3@ARNT!0.20!0.87!ARNT;;chr7:4721998..4722013,+!p3@FOXK1!0.20!0.87!FOXK1;;chr20:48807351..48807384,+!p1@CEBPB!0.19!143.87!CEBPB;;chr19:6424813..6424835,-!p1@KHSRP!0.19!87.19!KHSRP;;chr19:6279932..6280000,-!p1@MLLT1!0.19!34.88!MLLT1;;chr12:132628963..132629027,+!p1@NOC4L!0.19!19.62!NOC4L;;chr6:35310312..35310359,+!p1@PPARD!0.19!12.21!PPARD;;chr7:28220198..28220269,-!p2@JAZF1!0.19!11.77!JAZF1;;chr19:42724436..42724507,+!p1@ZNF526!0.19!10.90!ZNF526;;chr19:56879653..56879743,+!p1@ZNF542!0.19!9.59!ZNF542;;chr1:27022164..27022220,+!p2@ARID1A!0.19!9.59!ARID1A;;chr19:57106647..57106686,+!p1@ZNF71!0.19!8.72!ZNF71;;chr6:33285505..33285529,-!p1@ZBTB22!0.19!8.72!ZBTB22;;chr4:146859927..146860055,-!p1@ZNF827!0.19!7.85!ZNF827;;chr19:56652643..56652683,+!p1@ZNF444!0.19!6.98!ZNF444;;chr17:4981745..4981810,+!p1@ZFP3!0.19!6.10!ZFP3;;chr3:150126759..150126784,+!p2@TSC22D2!0.19!5.67!TSC22D2;;chr1:149871114..149871134,+!p3@BOLA1!0.19!4.80!BOLA1;;chr12:3068466..3068495,+!p3@TEAD4!0.19!2.18!TEAD4;;chr1:247171347..247171366,-!p2@ZNF695!0.19!1.74!ZNF695;;chr3:141121847..141121868,+!p5@ZBTB38!0.19!1.31!ZBTB38;;chr6:45390442..45390479,+!p8@RUNX2!0.19!1.31!RUNX2;;chr8:99956662..99956684,+!p1@OSR2!0.19!1.31!OSR2;;chr16:30569604..30569629,-!p3@ZNF764!0.19!1.31!ZNF764;;chr12:10875768..10875808,-!p3@CSDA!0.19!1.31!CSDA;;chr12:56583297..56583304,-!p4@SMARCC2!0.19!1.31!SMARCC2;;chr11:19263192..19263222,-!p2@E2F8!0.19!0.87!E2F8;;chr12:66218003..66218018,+!p9@HMGA2!0.19!0.87!HMGA2;;chr5:150284461..150284481,-!p4@ZNF300!0.19!0.87!ZNF300;;chr6:10415276..10415341,-!p2@TFAP2A!0.19!0.87!TFAP2A;;chr7:99679381..99679392,-!p4@ZNF3!0.19!0.87!ZNF3;;chr8:28748052..28748063,+!p4@HMBOX1!0.19!0.87!HMBOX1;;chr19:58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| |expression_enrichment_score=chr15:80843484..80843499,+!p5@ARNT2!1.96!89.37!ARNT2;;chr3:147127142..147127168,+!p1@ZIC1!1.90!78.04!ZIC1;;chr3:147127177..147127194,+!p2@ZIC1!1.78!58.85!ZIC1;;chr13:100634031..100634045,+!p1@ZIC2!1.71!50.57!ZIC2;;chr10:48355030..48355090,+!p1@ZNF488!1.61!50.57!ZNF488;;chr17:1959369..1959388,+!p2@HIC1!1.60!99.40!HIC1;;chr2:19558373..19558392,-!p1@OSR1!1.58!97.66!OSR1;;chr6:85474299..85474324,-!p1@TBX18!1.52!56.67!TBX18;;chr4:4861385..4861398,+!p1@MSX1!1.47!82.40!MSX1;;chr3:147111231..147111281,+!p3@ZIC1!1.45!27.47!ZIC1;;chr5:92918919..92918942,+!p1@NR2F1!1.34!91.55!NR2F1;;chr14:61116183..61116208,-!p1@SIX1!1.33!74.99!SIX1;;chr11:44331576..44331650,-!p1@ALX4!1.22!15.69!ALX4;;chr15:67458861..67458879,+!p17@SMAD3!1.20!14.82!SMAD3;;chrY:21906594..21906622,-!p1@KDM5D!1.19!14.39!KDM5D;;chr6:1610293..1610310,+!p1@FOXC1!1.17!23.11!FOXC1;;chr2:5832508..5832524,+!p1@SOX11!1.16!13.51!SOX11;;chr3:25469724..25469773,+!p1@RARB!1.15!19.18!RARB;;chr17:1958388..1958404,+!p1@HIC1!1.14!80.65!HIC1;;chr15:80696703..80696754,+!p1@ARNT2!1.14!17.00!ARNT2;;chr5:72744594..72744609,-!p1@FOXD1!1.13!57.11!FOXD1;;chr7:19157248..19157268,-!p1@TWIST1!1.13!34.44!TWIST1;;chr1:110613238..110613272,-!p1@ALX3!1.11!11.77!ALX3;;chr3:147139053..147139112,+!p5@ZIC1!1.09!11.33!ZIC1;;chr12:66218598..66218645,+!p2@HMGA2!1.08!51.44!HMGA2;;chr11:61520075..61520136,+!p1@C11orf9!1.08!23.54!C11orf9;;chr1:170633348..170633399,+!p2@PRRX1!1.06!14.39!PRRX1;;chr2:45236540..45236577,-!p1@SIX2!1.06!10.46!SIX2;;chr3:25469815..25469866,+!p3@RARB!1.06!10.46!RARB;;chr15:96873984..96873999,+!p3@NR2F2!1.05!75.42!NR2F2;;chr1:170633262..170633285,+!p3@PRRX1!1.05!11.77!PRRX1;;chr19:45260775..45260838,+!p5@BCL3!1.04!13.08!BCL3;;chr3:25470156..25470227,+!p2@RARB!1.01!9.16!RARB;;chr18:19749541..19749557,+!p1@GATA6!0.99!27.90!GATA6;;chr15:67458491..67458505,+!p18@SMAD3!0.99!8.72!SMAD3;;chr7:44143925..44143970,+!p1@AEBP1!0.97!193.13!AEBP1;;chr7:44143978..44143989,+!p2@AEBP1!0.97!15.69!AEBP1;;chr3:25470062..25470084,+!p4@RARB!0.97!8.28!RARB;;chr13:100634004..100634025,+!p2@ZIC2!0.97!8.28!ZIC2;;chr6:1389789..1389821,+!p1@FOXF2!0.96!11.33!FOXF2;;chr15:80842979..80842998,+!p20@ARNT2!0.95!7.85!ARNT2;;chr11:46299199..46299233,+!p1@CREB3L1!0.92!39.24!CREB3L1;;chr1:23696448..23696453,-!p5@ZNF436!0.92!9.16!ZNF436;;chr1:23696348..23696363,-!p4@ZNF436!0.92!8.28!ZNF436;;chr13:100623375..100623425,-!p1@ZIC5!0.92!7.41!ZIC5;;chr3:147111198..147111225,+!p4@ZIC1!0.92!7.41!ZIC1;;chr3:147111285..147111298,+!p10@ZIC1!0.92!7.41!ZIC1;;chr5:72744562..72744573,-!p3@FOXD1!0.90!8.72!FOXD1;;chr5:72743793..72743855,-!p4@FOXD1!0.88!7.85!FOXD1;;chr3:147124307..147124336,-!p2@ZIC4!0.88!6.54!ZIC4;;chr11:44331679..44331702,-!p2@ALX4!0.88!6.54!ALX4;;chr6:41514078..41514158,+!p1@FOXP4!0.87!61.47!FOXP4;;chr15:57511609..57511651,+!p2@TCF12!0.86!10.90!TCF12;;chrX:136648279..136648295,+!p1@ZIC3!0.85!6.10!ZIC3;;chr5:92920456..92920488,+!p9@NR2F1!0.84!6.98!NR2F1;;chr15:96869511..96869525,+!p16@NR2F2!0.84!6.54!NR2F2;;chr14:21994337..21994442,-!p1@SALL2!0.83!17.00!SALL2;;chr15:96874927..96874938,+!p8@NR2F2!0.82!12.64!NR2F2;;chr15:67458836..67458859,+!p22@SMAD3!0.82!5.67!SMAD3;;chr15:96874145..96874166,+!p7@NR2F2!0.81!10.90!NR2F2;;chr16:86600426..86600441,+!p1@FOXC2!0.80!13.95!FOXC2;;chr15:96869114..96869160,+!p11@NR2F2!0.80!7.41!NR2F2;;chr15:96873921..96873946,+!p1@NR2F2!0.79!159.56!NR2F2;;chr15:96874012..96874042,+!p2@NR2F2!0.79!50.14!NR2F2;;chr3:147111317..147111328,+!p8@ZIC1!0.79!5.23!ZIC1;;chr2:121493425..121493474,+!p1@GLI2!0.78!11.77!GLI2;;chr20:62462566..62462631,-!p1@ZBTB46!0.78!10.03!ZBTB46;;chr7:150946015..150946070,-!p3@SMARCD3!0.77!11.33!SMARCD3;;chr9:16870659..16870675,-!p2@BNC2!0.77!6.10!BNC2;;chr5:92918768..92918783,+!p8@NR2F1!0.76!4.80!NR2F1;;chr1:119530493..119530572,-!p1@TBX15!0.76!4.80!TBX15;;chr15:67430351..67430366,+!p10@SMAD3!0.76!4.80!SMAD3;;chr13:100634130..100634143,+!p3@ZIC2!0.76!4.80!ZIC2;;chr12:66218212..66218244,+!p5@HMGA2!0.75!6.98!HMGA2;;chr8:49833948..49833973,-!p2@SNAI2!0.74!31.39!SNAI2;;chr15:96873861..96873872,+!p9@NR2F2!0.74!10.03!NR2F2;;chr1:151032860..151032918,+!p1@MLLT11!0.73!57.55!MLLT11;;chr12:2986206..2986258,-!p2@FOXM1!0.73!29.21!FOXM1;;chr14:21994449..21994524,-!p2@SALL2!0.73!14.39!SALL2;;chr15:96874244..96874259,+!p5@NR2F2!0.73!11.33!NR2F2;;chr15:80696666..80696700,+!p4@ARNT2!0.73!4.36!ARNT2;;chr19:46800289..46800327,+!p2@HIF3A!0.73!4.36!HIF3A;;chr1:110613276..110613299,-!p2@ALX3!0.73!4.36!ALX3;;chr3:147114260..147114290,-!p3@ZIC4!0.73!4.36!ZIC4;;chr4:109089095..109089144,-!p6@LEF1!0.73!4.36!LEF1;;chr11:125034605..125034636,+!p2@PKNOX2!0.73!4.36!PKNOX2;;chr15:96869255..96869291,+!p6@NR2F2!0.72!8.28!NR2F2;;chr18:19749517..19749531,+!p3@GATA6!0.71!7.85!GATA6;;chr9:130954041..130954121,-!p2@CIZ1!0.70!19.62!CIZ1;;chr12:66218183..66218209,+!p4@HMGA2!0.70!8.28!HMGA2;;chr7:19157043..19157088,-!p2@TWIST1!0.69!10.90!TWIST1;;chr5:72744445..72744466,-!p2@FOXD1!0.69!6.98!FOXD1;;chr20:50721803..50721857,-!p2@ZFP64!0.69!6.54!ZFP64;;chr5:72744336..72744359,-!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ATA6;;chr19:58874112..58874125,-!p1@ZNF497,p5@A1BG!0.22!1.31!ZNF497;;chr12:125002827..125002855,-!p5@NCOR2!0.22!1.31!NCOR2;;chr4:146859887..146859921,-!p3@ZNF827!0.22!1.31!ZNF827;;chr3:170076223..170076242,+!p6@SKIL!0.22!0.87!SKIL;;chr1:170632285..170632309,+!p1@PRRX1!0.22!0.87!PRRX1;;chr17:38504601..38504634,+!p9@RARA!0.22!0.87!RARA;;chr18:53068911..53068935,-!p4@TCF4!0.22!0.87!TCF4;;chr19:19303794..19303805,+!p5@RFXANK!0.22!0.87!RFXANK;;chr9:99180597..99180614,-!p3@ZNF367!0.22!0.87!ZNF367;;chr1:202777535..202777556,-!p1@KDM5B!0.21!49.26!KDM5B;;chr20:44718538..44718612,-!p1@NCOA5!0.21!39.67!NCOA5;;chr1:8877692..8877732,-!p1@RERE!0.21!11.33!RERE;;chr2:60780753..60780800,-!p1@BCL11A!0.21!6.54!BCL11A;;chr7:26191809..26191890,+!p1@NFE2L3!0.21!6.54!NFE2L3;;chr17:47492252..47492265,-!p2@PHB!0.21!5.23!PHB;;chr4:38665883..38665922,+!p3@KLF3!0.21!4.80!KLF3;;chr2:27357446..27357475,-!p2@PREB!0.21!4.36!PREB;;chr14:73360799..73360817,-!p1@DPF3!0.21!4.36!DPF3;;chr2:239756671..239756732,+!p1@TWIST2!0.21!3.92!TWIST2;;chr6:144289132..144289134,-!p3@PLAGL1!0.21!2.62!PLAGL1;;chr13:74708372..74708409,-!p4@KLF12!0.21!2.62!KLF12;;chr4:95128841..95128865,+!p4@SMARCAD1!0.21!2.18!SMARCAD1;;chr13:37494365..37494381,-!p1@SMAD9!0.21!1.74!SMAD9;;chrX:84499081..84499115,+!p2@ZNF711!0.21!1.31!ZNF711;;chr8:128752771..128752843,+!p9@MYC!0.21!1.31!MYC;;chr15:96869292..96869320,+!p15@NR2F2!0.21!1.31!NR2F2;;chr16:67063262..67063273,+!p7@CBFB!0.21!0.87!CBFB;;chr10:21823296..21823309,+!p8@MLLT10!0.21!0.87!MLLT10;;chr2:28616312..28616315,+!p8@FOSL2!0.21!0.87!FOSL2;;chr1:164528687..164528711,+!p6@PBX1!0.21!0.87!PBX1;;chrX:107019163..107019179,-!p7@TSC22D3!0.21!0.87!TSC22D3;;chr11:65686855..65686946,+!p1@DRAP1!0.20!108.12!DRAP1;;chr11:57103327..57103372,-!p1@SSRP1!0.20!67.14!SSRP1;;chr7:4721885..4721945,+!p1@FOXK1!0.20!43.60!FOXK1;;chr10:22292613..22292674,-!p1@DNAJC1!0.20!41.85!DNAJC1;;chr9:137218281..137218340,+!p1@RXRA!0.20!40.54!RXRA;;chr20:62601243..62601291,-!p1@ZNF512B!0.20!13.51!ZNF512B;;chr1:157108180..157108193,-!p2@ETV3!0.20!6.98!ETV3;;chr15:85144229..85144273,+!p1@ZSCAN2!0.20!6.98!ZSCAN2;;chr10:35484804..35484902,+!p2@CREM!0.20!4.80!CREM;;chr6:43337180..43337244,-!p1@ZNF318!0.20!4.80!ZNF318;;chr17:38498402..38498445,+!p3@RARA!0.20!4.36!RARA;;chr8:146012660..146012711,-!p1@ZNF34!0.20!3.92!ZNF34;;chr19:58838369..58838439,+!p1@ZSCAN22!0.20!3.92!ZSCAN22;;chr18:74207147..74207183,-!p1@ZNF516!0.20!3.49!ZNF516;;chr15:100106244..100106259,+!p2@MEF2A!0.20!2.62!MEF2A;;chr15:66994561..66994597,+!p2@SMAD6!0.20!2.62!SMAD6;;chr1:935398..935465,-!p2@HES4!0.20!2.18!HES4;;chr11:47270436..47270464,+!p2@NR1H3!0.20!2.18!NR1H3;;chr12:72058102..72058127,+!p7@THAP2!0.20!1.74!THAP2;;chr5:178368186..178368238,+!p1@ZNF454!0.20!1.74!ZNF454;;chr19:58570605..58570655,+!p1@ZNF135!0.20!1.74!ZNF135;;chr19:4066763..4066779,-!p5@ZBTB7A!0.20!1.31!ZBTB7A;;chr17:41622925..41622976,-!p3@ETV4!0.20!1.31!ETV4;;chr19:3366625..3366629,+!p4@NFIC!0.20!1.31!NFIC;;chr22:42269885..42269899,+!p4@SREBF2!0.20!1.31!SREBF2;;chr19:12175573..12175584,+!p3@ZNF844!0.20!0.87!ZNF844;;chr10:64134120..64134183,+!p1@ZNF365!0.20!0.87!ZNF365;;chr12:26278008..26278024,-!p4@BHLHE41!0.20!0.87!BHLHE41;;chr14:33408072..33408114,+!p2@NPAS3!0.20!0.87!NPAS3;;chr19:47425425..47425441,+!p2@ARHGAP35!0.20!0.87!ARHGAP35;;chr1:150849208..150849217,-!p3@ARNT!0.20!0.87!ARNT;;chr7:4721998..4722013,+!p3@FOXK1!0.20!0.87!FOXK1;;chr20:48807351..48807384,+!p1@CEBPB!0.19!143.87!CEBPB;;chr19:6424813..6424835,-!p1@KHSRP!0.19!87.19!KHSRP;;chr19:6279932..6280000,-!p1@MLLT1!0.19!34.88!MLLT1;;chr12:132628963..132629027,+!p1@NOC4L!0.19!19.62!NOC4L;;chr6:35310312..35310359,+!p1@PPARD!0.19!12.21!PPARD;;chr7:28220198..28220269,-!p2@JAZF1!0.19!11.77!JAZF1;;chr19:42724436..42724507,+!p1@ZNF526!0.19!10.90!ZNF526;;chr19:56879653..56879743,+!p1@ZNF542!0.19!9.59!ZNF542;;chr1:27022164..27022220,+!p2@ARID1A!0.19!9.59!ARID1A;;chr19:57106647..57106686,+!p1@ZNF71!0.19!8.72!ZNF71;;chr6:33285505..33285529,-!p1@ZBTB22!0.19!8.72!ZBTB22;;chr4:146859927..146860055,-!p1@ZNF827!0.19!7.85!ZNF827;;chr19:56652643..56652683,+!p1@ZNF444!0.19!6.98!ZNF444;;chr17:4981745..4981810,+!p1@ZFP3!0.19!6.10!ZFP3;;chr3:150126759..150126784,+!p2@TSC22D2!0.19!5.67!TSC22D2;;chr1:149871114..149871134,+!p3@BOLA1!0.19!4.80!BOLA1;;chr12:3068466..3068495,+!p3@TEAD4!0.19!2.18!TEAD4;;chr1:247171347..247171366,-!p2@ZNF695!0.19!1.74!ZNF695;;chr3:141121847..141121868,+!p5@ZBTB38!0.19!1.31!ZBTB38;;chr6:45390442..45390479,+!p8@RUNX2!0.19!1.31!RUNX2;;chr8:99956662..99956684,+!p1@OSR2!0.19!1.31!OSR2;;chr16:30569604..30569629,-!p3@ZNF764!0.19!1.31!ZNF764;;chr12:10875768..10875808,-!p3@CSDA!0.19!1.31!CSDA;;chr12:56583297..56583304,-!p4@SMARCC2!0.19!1.31!SMARCC2;;chr11:19263192..19263222,-!p2@E2F8!0.19!0.87!E2F8;;chr12:66218003..66218018,+!p9@HMGA2!0.19!0.87!HMGA2;;chr5:150284461..150284481,-!p4@ZNF300!0.19!0.87!ZNF300;;chr6:10415276..10415341,-!p2@TFAP2A!0.19!0.87!TFAP2A;;chr7:99679381..99679392,-!p4@ZNF3!0.19!0.87!ZNF3;;chr8:28748052..28748063,+!p4@HMBOX1!0.19!0.87!HMBOX1;;chr19:58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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000151;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000327;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000499;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000708 | |||
|ffid_belonging_in_development=CL:0000134 | |ffid_belonging_in_development=CL:0000134 | ||
|fonse_cell_line= | |fonse_cell_line= | ||
Line 40: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Meningeal%2520Cells%252c%2520donor2.CNhs12080.11573-120E7.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Meningeal%2520Cells%252c%2520donor2.CNhs12080.11573-120E7.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Meningeal%2520Cells%252c%2520donor2.CNhs12080.11573-120E7.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Meningeal%2520Cells%252c%2520donor2.CNhs12080.11573-120E7.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Meningeal%2520Cells%252c%2520donor2.CNhs12080.11573-120E7.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11573-120E7 | |id=FF:11573-120E7 | ||
|is_a=EFO:0002091;;FF:0000091 | |is_a=EFO:0002091;;FF:0000091 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs12080 | |library_id=CNhs12080 | ||
|library_id_phase_based=2:CNhs12080 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11573 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10002.ATGTCA.11573 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11573 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10002.ATGTCA.11573 | |||
|name=Meningeal Cells, donor2 | |name=Meningeal Cells, donor2 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 49: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12080,LSID838,release011,COMPLETED | |profile_hcage=CNhs12080,LSID838,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10002,,, | |profile_srnaseq=SRhi10002,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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Line 63: | Line 80: | ||
|rna_rin=9.6 | |rna_rin=9.6 | ||
|rna_sample_type=total RNA | |rna_sample_type=total RNA | ||
|rna_tube_id= | |rna_tube_id=1.20E+09 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10002.ATGTCA | |||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |sample_category=primary cells | ||
Line 88: | Line 106: | ||
|top_motifs=EBF1:1.45338721434;HOX{A5,B5}:1.36479817329;PAX1,9:1.34619278915;ESRRA:1.26674063126;TAL1_TCF{3,4,12}:1.2076944086;IKZF1:1.08325175267;TFAP4:1.05228153907;NR3C1:0.981081623688;ZIC1..3:0.931241174147;TFCP2:0.877687791549;GZF1:0.857749821074;GFI1:0.810970515509;LEF1_TCF7_TCF7L1,2:0.787790876104;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.785545039583;TLX1..3_NFIC{dimer}:0.782414018992;TEAD1:0.699857279592;EN1,2:0.682611578401;ZNF238:0.674042886045;NR5A1,2:0.581517481822;TFDP1:0.578398321319;SPZ1:0.574423391432;HNF4A_NR2F1,2:0.566636327029;NFY{A,B,C}:0.545695606818;SOX5:0.538868138434;XCPE1{core}:0.499071166225;PRRX1,2:0.479584375333;MAZ:0.450585544335;TFAP2{A,C}:0.446966562715;ONECUT1,2:0.446828786053;KLF4:0.445852869683;RXR{A,B,G}:0.441859618642;HIC1:0.438441777786;GTF2A1,2:0.435482884251;ZNF423:0.409175189963;bHLH_family:0.407436517947;AIRE:0.404437525506;SOX17:0.395564428217;HSF1,2:0.394618713503;TFAP2B:0.390818893915;MZF1:0.39070507753;ZNF148:0.387382284528;LHX3,4:0.380635607504;SRF:0.380493963766;GTF2I:0.379708593573;NHLH1,2:0.37626013128;PATZ1:0.360666139875;POU1F1:0.329828291645;STAT5{A,B}:0.328072968961;GFI1B:0.323598909202;CRX:0.288718762484;MYB:0.265812486799;XBP1:0.243021970375;RXRA_VDR{dimer}:0.240117992892;TOPORS:0.232046728745;NFIX:0.217345114778;AR:0.215320981609;ATF6:0.212272399917;E2F1..5:0.198735364793;HAND1,2:0.188992386581;PAX8:0.184542856695;SP1:0.182816653877;TBP:0.179252146521;ZNF143:0.16889026319;PBX1:0.158438337813;NFE2L2:0.15779227243;MTE{core}:0.156978024839;ZBTB6:0.153028434957;NANOG{mouse}:0.152246499882;CUX2:0.144072903218;MEF2{A,B,C,D}:0.142004815541;FOXM1:0.139158352759;MED-1{core}:0.127847370986;MYBL2:0.125651441863;T:0.12381430323;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.120419309422;TP53:0.113355634808;NRF1:0.105115759097;MTF1:0.104719714442;NFATC1..3:0.0997484748645;NR6A1:0.0985143541887;YY1:0.0967368643784;HES1:0.0895108594644;GATA6:0.0891110595671;FOXP3:0.0834549049893;MAFB:0.0790913818946;NANOG:0.0640164288516;FOSL2:0.0550634188287;SOX{8,9,10}:0.0544476080652;HLF:0.0534445932984;FOXA2:0.0438380571955;UFEwm:0.0353086778919;PAX5:0.0321579026276;PAX3,7:0.00505470283752;PAX4:-0.0294738279549;FOXQ1:-0.032089521814;HNF1A:-0.0502307119135;ALX4:-0.0646685416289;RORA:-0.0654088711963;SOX2:-0.0665276921279;AHR_ARNT_ARNT2:-0.0765241447905;GCM1,2:-0.0836487247232;RFX1:-0.0839556957374;NFE2L1:-0.0890477816502;ZNF384:-0.0943406328378;NR1H4:-0.0964714696822;VSX1,2:-0.101913652657;RREB1:-0.104128738107;TBX4,5:-0.105956604053;ESR1:-0.10733143349;RBPJ:-0.107731637976;NKX6-1,2:-0.107927981447;FOXO1,3,4:-0.110945820157;CEBPA,B_DDIT3:-0.111691154068;OCT4_SOX2{dimer}:-0.115398421208;PAX6:-0.116158918783;PRDM1:-0.120734133926;GLI1..3:-0.120763730103;ETS1,2:-0.130275482502;ZFP161:-0.131991246144;FOS_FOS{B,L1}_JUN{B,D}:-0.135794757485;BACH2:-0.138839021007;NFIL3:-0.154901546918;REST:-0.156197660445;NKX3-1:-0.164277919409;EGR1..3:-0.168938336532;PPARG:-0.20134575444;CDC5L:-0.202438514945;ELF1,2,4:-0.211795717787;RUNX1..3:-0.212239884768;HOX{A4,D4}:-0.215918916645;STAT1,3:-0.220944953113;BREu{core}:-0.229230483149;STAT2,4,6:-0.2483557509;HBP1_HMGB_SSRP1_UBTF:-0.250104372078;HOX{A6,A7,B6,B7}:-0.265638834256;NKX2-2,8:-0.269759989375;JUN:-0.280431844689;NKX2-1,4:-0.281990484275;FOXD3:-0.287272737376;MYFfamily:-0.289225517051;NFE2:-0.28963884911;ELK1,4_GABP{A,B1}:-0.314926254244;PAX2:-0.329112461944;HOXA9_MEIS1:-0.331358949405;FOX{I1,J2}:-0.332229395388;ADNP_IRX_SIX_ZHX:-0.334464264336;NFKB1_REL_RELA:-0.338020459469;GATA4:-0.339509860995;TEF:-0.339520069645;NKX2-3_NKX2-5:-0.361643327572;SPIB:-0.378828306049;POU3F1..4:-0.390772855065;TGIF1:-0.4007063836;SMAD1..7,9:-0.432984484524;HMGA1,2:-0.436003254103;POU5F1:-0.455768639031;ATF2:-0.497697146804;HIF1A:-0.499272461612;POU2F1..3:-0.501848048414;HMX1:-0.510557053206;BPTF:-0.515606500898;SNAI1..3:-0.536620632995;IRF7:-0.539059121229;LMO2:-0.540836874082;MYOD1:-0.542246162218;IRF1,2:-0.557207481387;EVI1:-0.589284389382;SPI1:-0.59967346907;TLX2:-0.638726391439;ARID5B:-0.639139941715;POU6F1:-0.670197638893;FOX{F1,F2,J1}:-0.675345835898;NKX3-2:-0.677823315902;SREBF1,2:-0.692540851912;PDX1:-0.735495915107;EP300:-0.73614378915;ZEB1:-0.749942574152;DMAP1_NCOR{1,2}_SMARC:-0.764075751557;CREB1:-0.764534734018;FOXL1:-0.76665571058;FOX{D1,D2}:-0.784098362257;ZBTB16:-0.799171447748;PITX1..3:-0.829734423668;FOXP1:-0.891522657679;ATF4:-0.924353867887;RFX2..5_RFXANK_RFXAP:-0.926197207212;ATF5_CREB3:-0.931539854957;ALX1:-0.947267518126;CDX1,2,4:-0.995376421472;DBP:-1.0193969337;FOXN1:-1.1833959934;IKZF2:-1.25965743887 | |top_motifs=EBF1:1.45338721434;HOX{A5,B5}:1.36479817329;PAX1,9:1.34619278915;ESRRA:1.26674063126;TAL1_TCF{3,4,12}:1.2076944086;IKZF1:1.08325175267;TFAP4:1.05228153907;NR3C1:0.981081623688;ZIC1..3:0.931241174147;TFCP2:0.877687791549;GZF1:0.857749821074;GFI1:0.810970515509;LEF1_TCF7_TCF7L1,2:0.787790876104;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.785545039583;TLX1..3_NFIC{dimer}:0.782414018992;TEAD1:0.699857279592;EN1,2:0.682611578401;ZNF238:0.674042886045;NR5A1,2:0.581517481822;TFDP1:0.578398321319;SPZ1:0.574423391432;HNF4A_NR2F1,2:0.566636327029;NFY{A,B,C}:0.545695606818;SOX5:0.538868138434;XCPE1{core}:0.499071166225;PRRX1,2:0.479584375333;MAZ:0.450585544335;TFAP2{A,C}:0.446966562715;ONECUT1,2:0.446828786053;KLF4:0.445852869683;RXR{A,B,G}:0.441859618642;HIC1:0.438441777786;GTF2A1,2:0.435482884251;ZNF423:0.409175189963;bHLH_family:0.407436517947;AIRE:0.404437525506;SOX17:0.395564428217;HSF1,2:0.394618713503;TFAP2B:0.390818893915;MZF1:0.39070507753;ZNF148:0.387382284528;LHX3,4:0.380635607504;SRF:0.380493963766;GTF2I:0.379708593573;NHLH1,2:0.37626013128;PATZ1:0.360666139875;POU1F1:0.329828291645;STAT5{A,B}:0.328072968961;GFI1B:0.323598909202;CRX:0.288718762484;MYB:0.265812486799;XBP1:0.243021970375;RXRA_VDR{dimer}:0.240117992892;TOPORS:0.232046728745;NFIX:0.217345114778;AR:0.215320981609;ATF6:0.212272399917;E2F1..5:0.198735364793;HAND1,2:0.188992386581;PAX8:0.184542856695;SP1:0.182816653877;TBP:0.179252146521;ZNF143:0.16889026319;PBX1:0.158438337813;NFE2L2:0.15779227243;MTE{core}:0.156978024839;ZBTB6:0.153028434957;NANOG{mouse}:0.152246499882;CUX2:0.144072903218;MEF2{A,B,C,D}:0.142004815541;FOXM1:0.139158352759;MED-1{core}:0.127847370986;MYBL2:0.125651441863;T:0.12381430323;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.120419309422;TP53:0.113355634808;NRF1:0.105115759097;MTF1:0.104719714442;NFATC1..3:0.0997484748645;NR6A1:0.0985143541887;YY1:0.0967368643784;HES1:0.0895108594644;GATA6:0.0891110595671;FOXP3:0.0834549049893;MAFB:0.0790913818946;NANOG:0.0640164288516;FOSL2:0.0550634188287;SOX{8,9,10}:0.0544476080652;HLF:0.0534445932984;FOXA2:0.0438380571955;UFEwm:0.0353086778919;PAX5:0.0321579026276;PAX3,7:0.00505470283752;PAX4:-0.0294738279549;FOXQ1:-0.032089521814;HNF1A:-0.0502307119135;ALX4:-0.0646685416289;RORA:-0.0654088711963;SOX2:-0.0665276921279;AHR_ARNT_ARNT2:-0.0765241447905;GCM1,2:-0.0836487247232;RFX1:-0.0839556957374;NFE2L1:-0.0890477816502;ZNF384:-0.0943406328378;NR1H4:-0.0964714696822;VSX1,2:-0.101913652657;RREB1:-0.104128738107;TBX4,5:-0.105956604053;ESR1:-0.10733143349;RBPJ:-0.107731637976;NKX6-1,2:-0.107927981447;FOXO1,3,4:-0.110945820157;CEBPA,B_DDIT3:-0.111691154068;OCT4_SOX2{dimer}:-0.115398421208;PAX6:-0.116158918783;PRDM1:-0.120734133926;GLI1..3:-0.120763730103;ETS1,2:-0.130275482502;ZFP161:-0.131991246144;FOS_FOS{B,L1}_JUN{B,D}:-0.135794757485;BACH2:-0.138839021007;NFIL3:-0.154901546918;REST:-0.156197660445;NKX3-1:-0.164277919409;EGR1..3:-0.168938336532;PPARG:-0.20134575444;CDC5L:-0.202438514945;ELF1,2,4:-0.211795717787;RUNX1..3:-0.212239884768;HOX{A4,D4}:-0.215918916645;STAT1,3:-0.220944953113;BREu{core}:-0.229230483149;STAT2,4,6:-0.2483557509;HBP1_HMGB_SSRP1_UBTF:-0.250104372078;HOX{A6,A7,B6,B7}:-0.265638834256;NKX2-2,8:-0.269759989375;JUN:-0.280431844689;NKX2-1,4:-0.281990484275;FOXD3:-0.287272737376;MYFfamily:-0.289225517051;NFE2:-0.28963884911;ELK1,4_GABP{A,B1}:-0.314926254244;PAX2:-0.329112461944;HOXA9_MEIS1:-0.331358949405;FOX{I1,J2}:-0.332229395388;ADNP_IRX_SIX_ZHX:-0.334464264336;NFKB1_REL_RELA:-0.338020459469;GATA4:-0.339509860995;TEF:-0.339520069645;NKX2-3_NKX2-5:-0.361643327572;SPIB:-0.378828306049;POU3F1..4:-0.390772855065;TGIF1:-0.4007063836;SMAD1..7,9:-0.432984484524;HMGA1,2:-0.436003254103;POU5F1:-0.455768639031;ATF2:-0.497697146804;HIF1A:-0.499272461612;POU2F1..3:-0.501848048414;HMX1:-0.510557053206;BPTF:-0.515606500898;SNAI1..3:-0.536620632995;IRF7:-0.539059121229;LMO2:-0.540836874082;MYOD1:-0.542246162218;IRF1,2:-0.557207481387;EVI1:-0.589284389382;SPI1:-0.59967346907;TLX2:-0.638726391439;ARID5B:-0.639139941715;POU6F1:-0.670197638893;FOX{F1,F2,J1}:-0.675345835898;NKX3-2:-0.677823315902;SREBF1,2:-0.692540851912;PDX1:-0.735495915107;EP300:-0.73614378915;ZEB1:-0.749942574152;DMAP1_NCOR{1,2}_SMARC:-0.764075751557;CREB1:-0.764534734018;FOXL1:-0.76665571058;FOX{D1,D2}:-0.784098362257;ZBTB16:-0.799171447748;PITX1..3:-0.829734423668;FOXP1:-0.891522657679;ATF4:-0.924353867887;RFX2..5_RFXANK_RFXAP:-0.926197207212;ATF5_CREB3:-0.931539854957;ALX1:-0.947267518126;CDX1,2,4:-0.995376421472;DBP:-1.0193969337;FOXN1:-1.1833959934;IKZF2:-1.25965743887 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11573-120E7;search_select_hide=table117:FF:11573-120E7 | |||
}} | }} |
Latest revision as of 18:10, 4 June 2020
Name: | Meningeal Cells, donor2 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs12080 |
Sample type: | primary cells |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2, 3, 4 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12080
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12080
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.221 |
10 | 10 | 0.00318 |
100 | 100 | 0.335 |
101 | 101 | 0.204 |
102 | 102 | 0.0298 |
103 | 103 | 0.342 |
104 | 104 | 0.574 |
105 | 105 | 0.126 |
106 | 106 | 0.996 |
107 | 107 | 0.457 |
108 | 108 | 0.825 |
109 | 109 | 0.966 |
11 | 11 | 0.943 |
110 | 110 | 0.272 |
111 | 111 | 0.297 |
112 | 112 | 0.498 |
113 | 113 | 0.101 |
114 | 114 | 0.633 |
115 | 115 | 0.501 |
116 | 116 | 0.305 |
117 | 117 | 0.174 |
118 | 118 | 0.0433 |
119 | 119 | 0.226 |
12 | 12 | 0.404 |
120 | 120 | 0.457 |
121 | 121 | 0.925 |
122 | 122 | 0.446 |
123 | 123 | 0.00283 |
124 | 124 | 0.397 |
125 | 125 | 0.545 |
126 | 126 | 0.824 |
127 | 127 | 0.603 |
128 | 128 | 0.354 |
129 | 129 | 0.611 |
13 | 13 | 0.272 |
130 | 130 | 0.134 |
131 | 131 | 0.886 |
132 | 132 | 0.679 |
133 | 133 | 0.899 |
134 | 134 | 0.023 |
135 | 135 | 0.48 |
136 | 136 | 0.735 |
137 | 137 | 0.00376 |
138 | 138 | 0.094 |
139 | 139 | 0.181 |
14 | 14 | 0.322 |
140 | 140 | 0.547 |
141 | 141 | 0.55 |
142 | 142 | 0.979 |
143 | 143 | 0.322 |
144 | 144 | 0.568 |
145 | 145 | 0.698 |
146 | 146 | 0.0719 |
147 | 147 | 0.311 |
148 | 148 | 0.165 |
149 | 149 | 0.451 |
15 | 15 | 0.52 |
150 | 150 | 0.0594 |
151 | 151 | 0.328 |
152 | 152 | 0.833 |
153 | 153 | 0.312 |
154 | 154 | 0.00469 |
155 | 155 | 0.0121 |
156 | 156 | 0.828 |
157 | 157 | 0.69 |
158 | 158 | 0.0975 |
159 | 159 | 0.877 |
16 | 16 | 0.476 |
160 | 160 | 0.456 |
161 | 161 | 0.392 |
162 | 162 | 0.178 |
163 | 163 | 0.752 |
164 | 164 | 0.138 |
165 | 165 | 0.121 |
166 | 166 | 0.78 |
167 | 167 | 0.0619 |
168 | 168 | 0.586 |
169 | 169 | 0.218 |
17 | 17 | 0.536 |
18 | 18 | 0.126 |
19 | 19 | 0.248 |
2 | 2 | 0.195 |
20 | 20 | 0.246 |
21 | 21 | 0.397 |
22 | 22 | 0.172 |
23 | 23 | 0.947 |
24 | 24 | 0.284 |
25 | 25 | 0.782 |
26 | 26 | 0.82 |
27 | 27 | 0.182 |
28 | 28 | 0.0976 |
29 | 29 | 0.397 |
3 | 3 | 0.5 |
30 | 30 | 0.0436 |
31 | 31 | 0.713 |
32 | 32 | 9.33444e-6 |
33 | 33 | 0.727 |
34 | 34 | 0.129 |
35 | 35 | 0.369 |
36 | 36 | 0.112 |
37 | 37 | 0.319 |
38 | 38 | 0.477 |
39 | 39 | 0.233 |
4 | 4 | 0.84 |
40 | 40 | 0.609 |
41 | 41 | 0.716 |
42 | 42 | 0.979 |
43 | 43 | 0.598 |
44 | 44 | 0.559 |
45 | 45 | 0.321 |
46 | 46 | 0.79 |
47 | 47 | 0.723 |
48 | 48 | 0.818 |
49 | 49 | 0.574 |
5 | 5 | 0.545 |
50 | 50 | 0.642 |
51 | 51 | 0.803 |
52 | 52 | 0.968 |
53 | 53 | 0.264 |
54 | 54 | 0.923 |
55 | 55 | 0.44 |
56 | 56 | 0.669 |
57 | 57 | 0.666 |
58 | 58 | 0.125 |
59 | 59 | 0.342 |
6 | 6 | 0.343 |
60 | 60 | 0.652 |
61 | 61 | 0.896 |
62 | 62 | 0.183 |
63 | 63 | 0.503 |
64 | 64 | 0.451 |
65 | 65 | 0.0876 |
66 | 66 | 0.0407 |
67 | 67 | 0.928 |
68 | 68 | 0.97 |
69 | 69 | 0.413 |
7 | 7 | 0.901 |
70 | 70 | 0.376 |
71 | 71 | 0.234 |
72 | 72 | 0.223 |
73 | 73 | 0.797 |
74 | 74 | 0.573 |
75 | 75 | 0.516 |
76 | 76 | 0.0962 |
77 | 77 | 0.306 |
78 | 78 | 0.228 |
79 | 79 | 0.0468 |
8 | 8 | 0.236 |
80 | 80 | 0.122 |
81 | 81 | 0.0974 |
82 | 82 | 0.203 |
83 | 83 | 0.942 |
84 | 84 | 0.0507 |
85 | 85 | 0.71 |
86 | 86 | 0.162 |
87 | 87 | 0.901 |
88 | 88 | 0.57 |
89 | 89 | 0.252 |
9 | 9 | 0.216 |
90 | 90 | 0.216 |
91 | 91 | 0.313 |
92 | 92 | 0.755 |
93 | 93 | 0.47 |
94 | 94 | 0.929 |
95 | 95 | 0.481 |
96 | 96 | 0.171 |
97 | 97 | 0.389 |
98 | 98 | 0.923 |
99 | 99 | 9.39591e-4 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12080
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000151 (secretory cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000499 (stromal cell)
0000327 (extracellular matrix secreting cell)
0000255 (eukaryotic cell)
0000708 (leptomeningeal cell)
UBERON: Anatomy
0002384 (connective tissue)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)
0000119 (cell layer)
0003210 (blood-cerebrospinal fluid barrier)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000091 (human leptomeningeal cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)