FF:11365-117I6: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@ | |DRA_sample_Accession=CAGE@SAMD00005726 | ||
|accession_numbers=CAGE;DRX008499;DRR009371;DRZ000796;DRZ002181 | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005726 | ||
|accession_numbers=CAGE;DRX008499;DRR009371;DRZ000796;DRZ002181;DRZ012146;DRZ013531 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037265;DRR041631;DRZ007273 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001637,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004121,UBERON:0004119,UBERON:0010314,UBERON:0004111,UBERON:0004120,UBERON:0000077,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0005911,UBERON:0000477,UBERON:0000467,UBERON:0010313,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0010371,UBERON:0003509,UBERON:0007500,UBERON:0001981,UBERON:0000078,UBERON:0002049,UBERON:0010317,UBERON:0007798,UBERON:0002012,UBERON:0004535,UBERON:0004572,UBERON:0004537,UBERON:0008886,UBERON:0001009 | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001637,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004121,UBERON:0004119,UBERON:0010314,UBERON:0004111,UBERON:0004120,UBERON:0000077,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0005911,UBERON:0000477,UBERON:0000467,UBERON:0010313,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0010371,UBERON:0003509,UBERON:0007500,UBERON:0001981,UBERON:0000078,UBERON:0002049,UBERON:0010317,UBERON:0007798,UBERON:0002012,UBERON:0004535,UBERON:0004572,UBERON:0004537,UBERON:0008886,UBERON:0001009 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0000359,CL:0002591 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0000359,CL:0002591 | ||
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|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr8:55370487..55370503,+!p1@SOX17!1.87!73.46!SOX17;;chr2:19558373..19558392,-!p1@OSR1!1.86!188.72!OSR1;;chr9:132427972..132428056,+!p1@PRRX2!1.66!57.63!PRRX2;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.58!37.29!ZBED1;;chr2:239756671..239756732,+!p1@TWIST2!1.56!110.75!TWIST2;;chr1:170633348..170633399,+!p2@PRRX1!1.56!47.46!PRRX1;;chr1:170632285..170632309,+!p1@PRRX1!1.48!32.77!PRRX1;;chr15:67430351..67430366,+!p10@SMAD3!1.48!29.38!SMAD3;;chr11:46299199..46299233,+!p1@CREB3L1!1.45!134.48!CREB3L1;;chr6:34204921..34204939,+!p3@HMGA1!1.44!767.33!HMGA1;;chr17:1959369..1959388,+!p2@HIC1!1.44!67.80!HIC1;;chr11:46299539..46299620,+!p2@CREB3L1!1.44!44.07!CREB3L1;;chr9:132427883..132427951,+!p2@PRRX2!1.43!25.99!PRRX2;;chr14:29235961..29236008,+!p1@FOXG1!1.39!23.73!FOXG1;;chr19:13134772..13134822,+!p2@NFIX!1.38!33.90!NFIX;;chr18:19749386..19749404,+!p2@GATA6!1.38!32.77!GATA6;;chr1:170633058..170633084,+!p5@PRRX1!1.35!21.47!PRRX1;;chr4:174450089..174450153,-!p2@HAND2!1.33!20.34!HAND2;;chr11:65687362..65687436,+!p3@DRAP1!1.32!88.15!DRAP1;;chr1:170633262..170633285,+!p3@PRRX1!1.30!21.47!PRRX1;;chr6:134210243..134210257,+!p1@TCF21!1.23!15.82!TCF21;;chr4:174451370..174451387,-!p1@HAND2!1.20!14.69!HAND2;;chr18:19749541..19749557,+!p1@GATA6!1.17!42.94!GATA6;;chr11:65686802..65686818,+!p6@DRAP1!1.12!21.47!DRAP1;;chr2:239756739..239756755,+!p2@TWIST2!1.11!20.34!TWIST2;;chr19:47523058..47523114,+!p1@NPAS1!1.09!11.30!NPAS1;;chr14:29234581..29234601,+!p2@FOXG1!1.09!11.30!FOXG1;;chr19:13134457..13134462,+!p5@NFIX!1.07!19.21!NFIX;;chr12:53614115..53614154,-!p1@RARG!1.06!56.50!RARG;;chr15:67430381..67430396,+!p21@SMAD3!1.05!10.17!SMAD3;;chr3:25470156..25470227,+!p2@RARB!1.05!10.17!RARB;;chr11:46299443..46299459,+!p4@CREB3L1!1.00!9.04!CREB3L1;;chr7:27183291..27183324,-!p1@HOXA5!1.00!9.04!HOXA5;;chr7:19157248..19157268,-!p1@TWIST1!0.97!23.73!TWIST1;;chr17:7492684..7492778,-!p2@SOX15!0.95!16.95!SOX15;;chr19:13135386..13135435,+!p4@NFIX!0.95!7.91!NFIX;;chr19:46801639..46801699,+!p1@HIF3A!0.95!7.91!HIF3A;;chr1:170632137..170632172,+!p10@PRRX1!0.95!7.91!PRRX1;;chr6:34204672..34204692,+!p1@HMGA1!0.94!901.80!HMGA1;;chr17:1958388..1958404,+!p1@HIC1!0.94!50.85!HIC1;;chr19:13106214..13106382,+!p1@NFIX!0.92!177.42!NFIX;;chr7:19157043..19157088,-!p2@TWIST1!0.92!19.21!TWIST1;;chr11:65687158..65687216,+!p4@DRAP1!0.91!42.94!DRAP1;;chr14:24837368..24837401,+!p1@NFATC4!0.90!16.95!NFATC4;;chr19:13136130..13136165,+!p6@NFIX!0.89!9.04!NFIX;;chr7:27142290..27142310,-!p1@HOXA2!0.89!6.78!HOXA2;;chr7:27183263..27183284,-!p2@HOXA5!0.89!6.78!HOXA5;;chr1:170632115..170632136,+!p9@PRRX1!0.89!6.78!PRRX1;;chr1:170632439..170632465,+!p11@PRRX1!0.89!6.78!PRRX1;;chr1:170632723..170632739,+!p8@PRRX1!0.89!6.78!PRRX1;;chr10:131762504..131762555,-!p1@EBF3!0.89!6.78!EBF3;;chr14:29236269..29236285,+!p3@FOXG1!0.89!6.78!FOXG1;;chr2:66662281..66662308,+!p1@MEIS1!0.88!23.73!MEIS1;;chr20:42543441..42543497,+!p1@TOX2!0.86!29.38!TOX2;;chr15:96876966..96877017,+!p12@NR2F2!0.85!9.04!NR2F2;;chr11:65687222..65687240,+!p7@DRAP1!0.85!7.91!DRAP1;;chr1:170632959..170632987,+!p4@PRRX1!0.85!6.78!PRRX1;;chr16:86600426..86600441,+!p1@FOXC2!0.82!14.69!FOXC2;;chr9:16870710..16870763,-!p1@BNC2!0.82!10.17!BNC2;;chr8:72756667..72756736,-!p2@MSC!0.82!9.04!MSC;;chr7:1577899..1577943,+!p3@MAFK!0.82!5.65!MAFK;;chr9:16705069..16705086,-!p3@BNC2!0.82!5.65!BNC2;;chr12:54447637..54447659,+!p4@HOXC4!0.82!5.65!HOXC4;;chr1:170632647..170632659,+!p17@PRRX1!0.82!5.65!PRRX1;;chr16:31076332..31076388,-!p3@ZNF668!0.82!5.65!ZNF668;;chr16:86600870..86600921,+!p2@FOXC2!0.82!5.65!FOXC2;;chr17:46671108..46671147,-!p1@HOXB5!0.82!5.65!HOXB5;;chr2:119604456..119604501,-!p2@EN1!0.82!5.65!EN1;;chr7:44143925..44143970,+!p1@AEBP1!0.81!131.09!AEBP1;;chr2:66662249..66662267,+!p2@MEIS1!0.81!22.60!MEIS1;;chr11:8102846..8102892,+!p1@TUB!0.81!7.91!TUB;;chr17:46622070..46622109,-!p1@HOXB2!0.80!12.43!HOXB2;;chr12:66218255..66218304,+!p3@HMGA2!0.79!14.69!HMGA2;;chr9:110251836..110251887,-!p4@KLF4!0.78!6.78!KLF4;;chr19:45260775..45260838,+!p5@BCL3!0.78!6.78!BCL3;;chr11:46299186..46299195,+!p3@CREB3L1!0.78!5.65!CREB3L1;;chr16:88519743..88519754,+!p2@ZFPM1!0.78!5.65!ZFPM1;;chr20:42543506..42543549,+!p2@TOX2!0.77!12.43!TOX2;;chr11:615570..615721,-!p2@IRF7!0.77!10.17!IRF7;;chr18:19749517..19749531,+!p3@GATA6!0.76!9.04!GATA6;;chr17:3571887..3571918,-!p2@TAX1BP3!0.75!57.63!TAX1BP3;;chr3:128206762..128206781,-!p2@GATA2!0.75!31.64!GATA2;;chr11:65686732..65686756,+!p2@DRAP1!0.75!21.47!DRAP1;;chr19:44037546..44037594,+!p1@ZNF575!0.75!10.17!ZNF575;;chr1:23696308..23696339,-!p2@ZNF436!0.74!10.17!ZNF436;;chr12:66218212..66218244,+!p5@HMGA2!0.74!6.78!HMGA2;;chr2:19558327..19558334,-!p2@OSR1!0.74!4.52!OSR1;;chr2:45236540..45236577,-!p1@SIX2!0.74!4.52!SIX2;;chr3:25469815..25469866,+!p3@RARB!0.74!4.52!RARB;;chr17:46659728..46659749,-!p3@HOXB3!0.74!4.52!HOXB3;;chr19:13136057..13136085,+!p11@NFIX!0.74!4.52!NFIX;;chr1:170632250..170632277,+!p7@PRRX1!0.74!4.52!PRRX1;;chr1:170633100..170633112,+!p19@PRRX1!0.74!4.52!PRRX1;;chr7:27170042..27170064,-!p4@HOXA4!0.74!4.52!HOXA4;;chr16:86544113..86544145,+!p1@FOXF1!0.73!5.65!FOXF1;;chr6:34204973..34204990,+!p4@HMGA1!0.72!64.41!HMGA1;;chr12:124873357..124873401,-!p1@NCOR2!0.72!55.37!NCOR2;;chr11:65667884..65667895,-!p2@FOSL1!0.72!18.08!FOSL1;;chr17:41622765..41622821,-!p2@ETV4!0.72!6.78!ETV4;;chr7:44143997..44144008,+!p3@AEBP1!0.72!5.65!AEBP1;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.72!4.52!GLIS1;;chr4:81118647..81118666,+!p1@PRDM8!0.71!5.65!PRDM8;;chr5:158526459..158526481,-!p2@EBF1!0.71!5.65!EBF1;;chr16:88519669..88519726,+!p1@ZFPM1!0.70!40.68!ZFPM1;;chr11:65686952..65686975,+!p5@DRAP1!0.70!24.86!DRAP1;;chr7:44143978..44143989,+!p2@AEBP1!0.70!7.91!AEBP1;;chr18:3449821..3449860,+!p7@TGIF1!0.70!7.91!TGIF1;;chr7:14029283..14029311,-!p1@ETV1!0.69!23.73!ETV1;;chr15:37392724..37392757,-!p1@MEIS2!0.69!20.34!MEIS2;;chr6:1389789..1389821,+!p1@FOXF2!0.69!5.65!FOXF2;;chr18:53068911..53068935,-!p4@TCF4!0.69!4.52!TCF4;;chr19:45251943..45252006,+!p1@BCL3!0.68!114.14!BCL3;;chr14:73360799..73360817,-!p1@DPF3!0.68!14.69!DPF3;;chr5:72744445..72744466,-!p2@FOXD1!0.68!6.78!FOXD1;;chr17:3571863..3571881,-!p1@TAX1BP3!0.67!302.86!TAX1BP3;;chr11:65667846..65667868,-!p1@FOSL1!0.67!111.88!FOSL1;;chr8:37553292..37553317,+!p1@ZNF703!0.67!100.58!ZNF703;;chr12:66218598..66218645,+!p2@HMGA2!0.67!19.21!HMGA2;;chr5:158526917..158526932,-!p1@EBF1!0.67!10.17!EBF1;;chr17:59477197..59477212,+!p2@TBX2!0.67!6.78!TBX2;;chr19:58987786..58987805,+!p3@ZNF446!0.67!5.65!ZNF446;;chr20:6748325..6748352,+!p1@BMP2!0.67!5.65!BMP2;;chr10:94449703..94449718,+!p1@HHEX!0.66!15.82!HHEX;;chr1:158969752..158969780,+!p6@IFI16!0.66!6.78!IFI16;;chr19:3366625..3366629,+!p4@NFIC!0.66!5.65!NFIC;;chr9:16870659..16870675,-!p2@BNC2!0.66!4.52!BNC2;;chr7:14029312..14029325,-!p4@ETV1!0.66!4.52!ETV1;;chr4:81104985..81105005,+!p4@PRDM8!0.66!4.52!PRDM8;;chr6:34205372..34205412,+!p5@HMGA1!0.65!20.34!HMGA1;;chr14:61116183..61116208,-!p1@SIX1!0.64!14.69!SIX1;;chr5:139487608..139487663,+!p3@PURA!0.64!7.91!PURA;;chr7:27169801..27169844,-!p2@HOXA4!0.64!3.39!HOXA4;;chr8:22550530..22550609,-!p2@EGR3!0.64!3.39!EGR3;;chr8:25902876..25902936,-!p1@EBF2!0.64!3.39!EBF2;;chr10:131762410..131762436,-!p2@EBF3!0.64!3.39!EBF3;;chr10:64578528..64578542,-!p5@EGR2!0.64!3.39!EGR2;;chr11:32457103..32457123,-!p3@WT1!0.64!3.39!WT1;;chr13:45150455..45150472,-!p8@TSC22D1!0.64!3.39!TSC22D1;;chr14:29234870..29234930,+!p7@FOXG1!0.64!3.39!FOXG1;;chr16:86601088..86601105,+!p5@FOXC2!0.64!3.39!FOXC2;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!0.64!3.39!SEBOX;;chr17:41622731..41622764,-!p5@ETV4!0.64!3.39!ETV4;;chr18:19749353..19749367,+!p4@GATA6!0.64!3.39!GATA6;;chr19:13135582..13135600,+!p3@NFIX!0.64!3.39!NFIX;;chr1:170633225..170633230,+!p25@PRRX1!0.64!3.39!PRRX1;;chr1:170633245..170633256,+!p14@PRRX1!0.64!3.39!PRRX1;;chr1:221054853..221054873,+!p9@HLX!0.64!3.39!HLX;;chr2:85981107..85981120,+!p3@ATOH8!0.64!3.39!ATOH8;;chr3:21792682..21792720,-!p1@ZNF385D!0.64!3.39!ZNF385D;;chr4:121843402..121843416,+!p4@PRDM5!0.64!3.39!PRDM5;;chr19:50432453..50432468,+!p1@ATF5!0.63!216.98!ATF5;;chr1:8934931..8934947,-!p4@ENO1!0.63!12.43!ENO1;;chr19:47922750..47922795,-!p1@MEIS3!0.62!5.65!MEIS3;;chr2:121493492..121493537,+!p2@GLI2!0.62!5.65!GLI2;;chr2:74730430..74730451,-!p1@LBX2!0.62!5.65!LBX2;;chr11:65687243..65687276,+!p8@DRAP1!0.62!4.52!DRAP1;;chr5:174151553..174151610,+!p1@MSX2!0.61!5.65!MSX2;;chr6:1610293..1610310,+!p1@FOXC1!0.61!5.65!FOXC1;;chr17:15689487..15689505,+!p@chr17:15689487..15689505,+!0.61!5.65!MEIS3P1;;chr8:106330656..106330684,+!p1@ZFPM2!0.60!9.04!ZFPM2;;chr3:71007770..71007789,-!p9@FOXP1!0.60!9.04!FOXP1;;chr1:221053049..221053075,+!p3@HLX!0.60!5.65!HLX;;chr12:125002827..125002855,-!p5@NCOR2!0.60!4.52!NCOR2;;chr18:3452133..3452150,+!p19@TGIF1!0.60!3.39!TGIF1;;chr1:164528410..164528428,+!p1@PBX1!0.59!25.99!PBX1;;chr9:35732647..35732678,+!p2@CREB3!0.59!19.21!CREB3;;chr12:54772960..54773015,-!p3@ZNF385A!0.59!16.95!ZNF385A;;chr17:46621937..46621966,-!p2@HOXB2!0.59!9.04!HOXB2;;chr10:64576105..64576133,-!p1@EGR2!0.59!6.78!EGR2;;chr16:8962202..8962222,-!p3@CARHSP1!0.59!5.65!CARHSP1;;chr3:25469724..25469773,+!p1@RARB!0.59!4.52!RARB;;chr7:44143738..44143760,+!p4@AEBP1!0.59!3.39!AEBP1;;chr8:72756637..72756664,-!p3@MSC!0.59!3.39!MSC;;chr8:48650715..48650735,-!p1@CEBPD!0.58!444.12!CEBPD;;chr17:59477233..59477263,+!p1@TBX2!0.58!10.17!TBX2;;chr9:14083467..14083483,-!p4@NFIB!0.58!7.91!NFIB;;chr2:200323414..200323455,-!p1@SATB2!0.58!6.78!SATB2;;chr6:85474299..85474324,-!p1@TBX18!0.58!5.65!TBX18;;chr17:46675420..46675465,-!p3@HOXB6!0.58!3.39!HOXB6;;chr4:81104958..81104981,+!p5@PRDM8!0.58!3.39!PRDM8;;chr4:81105027..81105039,+!p3@PRDM8!0.58!3.39!PRDM8;;chr17:38256822..38256851,-!p1@NR1D1!0.57!25.99!NR1D1;;chr3:52001426..52001447,-!p3@PCBP4!0.57!9.04!PCBP4;;chr10:77161133..77161176,-!p3@ZNF503!0.57!6.78!ZNF503;;chr17:46622114..46622138,-!p4@HOXB2!0.57!4.52!HOXB2;;chr19:56111614..56111634,+!p3@ZNF524!0.57!4.52!ZNF524;;chr1:221052994..221053008,+!p6@HLX!0.57!3.39!HLX;;chr6:34204642..3420466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| |expression_enrichment_score=chr8:55370487..55370503,+!p1@SOX17!1.87!73.46!SOX17;;chr2:19558373..19558392,-!p1@OSR1!1.86!188.72!OSR1;;chr9:132427972..132428056,+!p1@PRRX2!1.66!57.63!PRRX2;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.58!37.29!ZBED1;;chr2:239756671..239756732,+!p1@TWIST2!1.56!110.75!TWIST2;;chr1:170633348..170633399,+!p2@PRRX1!1.56!47.46!PRRX1;;chr1:170632285..170632309,+!p1@PRRX1!1.48!32.77!PRRX1;;chr15:67430351..67430366,+!p10@SMAD3!1.48!29.38!SMAD3;;chr11:46299199..46299233,+!p1@CREB3L1!1.45!134.48!CREB3L1;;chr6:34204921..34204939,+!p3@HMGA1!1.44!767.33!HMGA1;;chr17:1959369..1959388,+!p2@HIC1!1.44!67.80!HIC1;;chr11:46299539..46299620,+!p2@CREB3L1!1.44!44.07!CREB3L1;;chr9:132427883..132427951,+!p2@PRRX2!1.43!25.99!PRRX2;;chr14:29235961..29236008,+!p1@FOXG1!1.39!23.73!FOXG1;;chr19:13134772..13134822,+!p2@NFIX!1.38!33.90!NFIX;;chr18:19749386..19749404,+!p2@GATA6!1.38!32.77!GATA6;;chr1:170633058..170633084,+!p5@PRRX1!1.35!21.47!PRRX1;;chr4:174450089..174450153,-!p2@HAND2!1.33!20.34!HAND2;;chr11:65687362..65687436,+!p3@DRAP1!1.32!88.15!DRAP1;;chr1:170633262..170633285,+!p3@PRRX1!1.30!21.47!PRRX1;;chr6:134210243..134210257,+!p1@TCF21!1.23!15.82!TCF21;;chr4:174451370..174451387,-!p1@HAND2!1.20!14.69!HAND2;;chr18:19749541..19749557,+!p1@GATA6!1.17!42.94!GATA6;;chr11:65686802..65686818,+!p6@DRAP1!1.12!21.47!DRAP1;;chr2:239756739..239756755,+!p2@TWIST2!1.11!20.34!TWIST2;;chr19:47523058..47523114,+!p1@NPAS1!1.09!11.30!NPAS1;;chr14:29234581..29234601,+!p2@FOXG1!1.09!11.30!FOXG1;;chr19:13134457..13134462,+!p5@NFIX!1.07!19.21!NFIX;;chr12:53614115..53614154,-!p1@RARG!1.06!56.50!RARG;;chr15:67430381..67430396,+!p21@SMAD3!1.05!10.17!SMAD3;;chr3:25470156..25470227,+!p2@RARB!1.05!10.17!RARB;;chr11:46299443..46299459,+!p4@CREB3L1!1.00!9.04!CREB3L1;;chr7:27183291..27183324,-!p1@HOXA5!1.00!9.04!HOXA5;;chr7:19157248..19157268,-!p1@TWIST1!0.97!23.73!TWIST1;;chr17:7492684..7492778,-!p2@SOX15!0.95!16.95!SOX15;;chr19:13135386..13135435,+!p4@NFIX!0.95!7.91!NFIX;;chr19:46801639..46801699,+!p1@HIF3A!0.95!7.91!HIF3A;;chr1:170632137..170632172,+!p10@PRRX1!0.95!7.91!PRRX1;;chr6:34204672..34204692,+!p1@HMGA1!0.94!901.80!HMGA1;;chr17:1958388..1958404,+!p1@HIC1!0.94!50.85!HIC1;;chr19:13106214..13106382,+!p1@NFIX!0.92!177.42!NFIX;;chr7:19157043..19157088,-!p2@TWIST1!0.92!19.21!TWIST1;;chr11:65687158..65687216,+!p4@DRAP1!0.91!42.94!DRAP1;;chr14:24837368..24837401,+!p1@NFATC4!0.90!16.95!NFATC4;;chr19:13136130..13136165,+!p6@NFIX!0.89!9.04!NFIX;;chr7:27142290..27142310,-!p1@HOXA2!0.89!6.78!HOXA2;;chr7:27183263..27183284,-!p2@HOXA5!0.89!6.78!HOXA5;;chr1:170632115..170632136,+!p9@PRRX1!0.89!6.78!PRRX1;;chr1:170632439..170632465,+!p11@PRRX1!0.89!6.78!PRRX1;;chr1:170632723..170632739,+!p8@PRRX1!0.89!6.78!PRRX1;;chr10:131762504..131762555,-!p1@EBF3!0.89!6.78!EBF3;;chr14:29236269..29236285,+!p3@FOXG1!0.89!6.78!FOXG1;;chr2:66662281..66662308,+!p1@MEIS1!0.88!23.73!MEIS1;;chr20:42543441..42543497,+!p1@TOX2!0.86!29.38!TOX2;;chr15:96876966..96877017,+!p12@NR2F2!0.85!9.04!NR2F2;;chr11:65687222..65687240,+!p7@DRAP1!0.85!7.91!DRAP1;;chr1:170632959..170632987,+!p4@PRRX1!0.85!6.78!PRRX1;;chr16:86600426..86600441,+!p1@FOXC2!0.82!14.69!FOXC2;;chr9:16870710..16870763,-!p1@BNC2!0.82!10.17!BNC2;;chr8:72756667..72756736,-!p2@MSC!0.82!9.04!MSC;;chr7:1577899..1577943,+!p3@MAFK!0.82!5.65!MAFK;;chr9:16705069..16705086,-!p3@BNC2!0.82!5.65!BNC2;;chr12:54447637..54447659,+!p4@HOXC4!0.82!5.65!HOXC4;;chr1:170632647..170632659,+!p17@PRRX1!0.82!5.65!PRRX1;;chr16:31076332..31076388,-!p3@ZNF668!0.82!5.65!ZNF668;;chr16:86600870..86600921,+!p2@FOXC2!0.82!5.65!FOXC2;;chr17:46671108..46671147,-!p1@HOXB5!0.82!5.65!HOXB5;;chr2:119604456..119604501,-!p2@EN1!0.82!5.65!EN1;;chr7:44143925..44143970,+!p1@AEBP1!0.81!131.09!AEBP1;;chr2:66662249..66662267,+!p2@MEIS1!0.81!22.60!MEIS1;;chr11:8102846..8102892,+!p1@TUB!0.81!7.91!TUB;;chr17:46622070..46622109,-!p1@HOXB2!0.80!12.43!HOXB2;;chr12:66218255..66218304,+!p3@HMGA2!0.79!14.69!HMGA2;;chr9:110251836..110251887,-!p4@KLF4!0.78!6.78!KLF4;;chr19:45260775..45260838,+!p5@BCL3!0.78!6.78!BCL3;;chr11:46299186..46299195,+!p3@CREB3L1!0.78!5.65!CREB3L1;;chr16:88519743..88519754,+!p2@ZFPM1!0.78!5.65!ZFPM1;;chr20:42543506..42543549,+!p2@TOX2!0.77!12.43!TOX2;;chr11:615570..615721,-!p2@IRF7!0.77!10.17!IRF7;;chr18:19749517..19749531,+!p3@GATA6!0.76!9.04!GATA6;;chr17:3571887..3571918,-!p2@TAX1BP3!0.75!57.63!TAX1BP3;;chr3:128206762..128206781,-!p2@GATA2!0.75!31.64!GATA2;;chr11:65686732..65686756,+!p2@DRAP1!0.75!21.47!DRAP1;;chr19:44037546..44037594,+!p1@ZNF575!0.75!10.17!ZNF575;;chr1:23696308..23696339,-!p2@ZNF436!0.74!10.17!ZNF436;;chr12:66218212..66218244,+!p5@HMGA2!0.74!6.78!HMGA2;;chr2:19558327..19558334,-!p2@OSR1!0.74!4.52!OSR1;;chr2:45236540..45236577,-!p1@SIX2!0.74!4.52!SIX2;;chr3:25469815..25469866,+!p3@RARB!0.74!4.52!RARB;;chr17:46659728..46659749,-!p3@HOXB3!0.74!4.52!HOXB3;;chr19:13136057..13136085,+!p11@NFIX!0.74!4.52!NFIX;;chr1:170632250..170632277,+!p7@PRRX1!0.74!4.52!PRRX1;;chr1:170633100..170633112,+!p19@PRRX1!0.74!4.52!PRRX1;;chr7:27170042..27170064,-!p4@HOXA4!0.74!4.52!HOXA4;;chr16:86544113..86544145,+!p1@FOXF1!0.73!5.65!FOXF1;;chr6:34204973..34204990,+!p4@HMGA1!0.72!64.41!HMGA1;;chr12:124873357..124873401,-!p1@NCOR2!0.72!55.37!NCOR2;;chr11:65667884..65667895,-!p2@FOSL1!0.72!18.08!FOSL1;;chr17:41622765..41622821,-!p2@ETV4!0.72!6.78!ETV4;;chr7:44143997..44144008,+!p3@AEBP1!0.72!5.65!AEBP1;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.72!4.52!GLIS1;;chr4:81118647..81118666,+!p1@PRDM8!0.71!5.65!PRDM8;;chr5:158526459..158526481,-!p2@EBF1!0.71!5.65!EBF1;;chr16:88519669..88519726,+!p1@ZFPM1!0.70!40.68!ZFPM1;;chr11:65686952..65686975,+!p5@DRAP1!0.70!24.86!DRAP1;;chr7:44143978..44143989,+!p2@AEBP1!0.70!7.91!AEBP1;;chr18:3449821..3449860,+!p7@TGIF1!0.70!7.91!TGIF1;;chr7:14029283..14029311,-!p1@ETV1!0.69!23.73!ETV1;;chr15:37392724..37392757,-!p1@MEIS2!0.69!20.34!MEIS2;;chr6:1389789..1389821,+!p1@FOXF2!0.69!5.65!FOXF2;;chr18:53068911..53068935,-!p4@TCF4!0.69!4.52!TCF4;;chr19:45251943..45252006,+!p1@BCL3!0.68!114.14!BCL3;;chr14:73360799..73360817,-!p1@DPF3!0.68!14.69!DPF3;;chr5:72744445..72744466,-!p2@FOXD1!0.68!6.78!FOXD1;;chr17:3571863..3571881,-!p1@TAX1BP3!0.67!302.86!TAX1BP3;;chr11:65667846..65667868,-!p1@FOSL1!0.67!111.88!FOSL1;;chr8:37553292..37553317,+!p1@ZNF703!0.67!100.58!ZNF703;;chr12:66218598..66218645,+!p2@HMGA2!0.67!19.21!HMGA2;;chr5:158526917..158526932,-!p1@EBF1!0.67!10.17!EBF1;;chr17:59477197..59477212,+!p2@TBX2!0.67!6.78!TBX2;;chr19:58987786..58987805,+!p3@ZNF446!0.67!5.65!ZNF446;;chr20:6748325..6748352,+!p1@BMP2!0.67!5.65!BMP2;;chr10:94449703..94449718,+!p1@HHEX!0.66!15.82!HHEX;;chr1:158969752..158969780,+!p6@IFI16!0.66!6.78!IFI16;;chr19:3366625..3366629,+!p4@NFIC!0.66!5.65!NFIC;;chr9:16870659..16870675,-!p2@BNC2!0.66!4.52!BNC2;;chr7:14029312..14029325,-!p4@ETV1!0.66!4.52!ETV1;;chr4:81104985..81105005,+!p4@PRDM8!0.66!4.52!PRDM8;;chr6:34205372..34205412,+!p5@HMGA1!0.65!20.34!HMGA1;;chr14:61116183..61116208,-!p1@SIX1!0.64!14.69!SIX1;;chr5:139487608..139487663,+!p3@PURA!0.64!7.91!PURA;;chr7:27169801..27169844,-!p2@HOXA4!0.64!3.39!HOXA4;;chr8:22550530..22550609,-!p2@EGR3!0.64!3.39!EGR3;;chr8:25902876..25902936,-!p1@EBF2!0.64!3.39!EBF2;;chr10:131762410..131762436,-!p2@EBF3!0.64!3.39!EBF3;;chr10:64578528..64578542,-!p5@EGR2!0.64!3.39!EGR2;;chr11:32457103..32457123,-!p3@WT1!0.64!3.39!WT1;;chr13:45150455..45150472,-!p8@TSC22D1!0.64!3.39!TSC22D1;;chr14:29234870..29234930,+!p7@FOXG1!0.64!3.39!FOXG1;;chr16:86601088..86601105,+!p5@FOXC2!0.64!3.39!FOXC2;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!0.64!3.39!SEBOX;;chr17:41622731..41622764,-!p5@ETV4!0.64!3.39!ETV4;;chr18:19749353..19749367,+!p4@GATA6!0.64!3.39!GATA6;;chr19:13135582..13135600,+!p3@NFIX!0.64!3.39!NFIX;;chr1:170633225..170633230,+!p25@PRRX1!0.64!3.39!PRRX1;;chr1:170633245..170633256,+!p14@PRRX1!0.64!3.39!PRRX1;;chr1:221054853..221054873,+!p9@HLX!0.64!3.39!HLX;;chr2:85981107..85981120,+!p3@ATOH8!0.64!3.39!ATOH8;;chr3:21792682..21792720,-!p1@ZNF385D!0.64!3.39!ZNF385D;;chr4:121843402..121843416,+!p4@PRDM5!0.64!3.39!PRDM5;;chr19:50432453..50432468,+!p1@ATF5!0.63!216.98!ATF5;;chr1:8934931..8934947,-!p4@ENO1!0.63!12.43!ENO1;;chr19:47922750..47922795,-!p1@MEIS3!0.62!5.65!MEIS3;;chr2:121493492..121493537,+!p2@GLI2!0.62!5.65!GLI2;;chr2:74730430..74730451,-!p1@LBX2!0.62!5.65!LBX2;;chr11:65687243..65687276,+!p8@DRAP1!0.62!4.52!DRAP1;;chr5:174151553..174151610,+!p1@MSX2!0.61!5.65!MSX2;;chr6:1610293..1610310,+!p1@FOXC1!0.61!5.65!FOXC1;;chr17:15689487..15689505,+!p@chr17:15689487..15689505,+!0.61!5.65!MEIS3P1;;chr8:106330656..106330684,+!p1@ZFPM2!0.60!9.04!ZFPM2;;chr3:71007770..71007789,-!p9@FOXP1!0.60!9.04!FOXP1;;chr1:221053049..221053075,+!p3@HLX!0.60!5.65!HLX;;chr12:125002827..125002855,-!p5@NCOR2!0.60!4.52!NCOR2;;chr18:3452133..3452150,+!p19@TGIF1!0.60!3.39!TGIF1;;chr1:164528410..164528428,+!p1@PBX1!0.59!25.99!PBX1;;chr9:35732647..35732678,+!p2@CREB3!0.59!19.21!CREB3;;chr12:54772960..54773015,-!p3@ZNF385A!0.59!16.95!ZNF385A;;chr17:46621937..46621966,-!p2@HOXB2!0.59!9.04!HOXB2;;chr10:64576105..64576133,-!p1@EGR2!0.59!6.78!EGR2;;chr16:8962202..8962222,-!p3@CARHSP1!0.59!5.65!CARHSP1;;chr3:25469724..25469773,+!p1@RARB!0.59!4.52!RARB;;chr7:44143738..44143760,+!p4@AEBP1!0.59!3.39!AEBP1;;chr8:72756637..72756664,-!p3@MSC!0.59!3.39!MSC;;chr8:48650715..48650735,-!p1@CEBPD!0.58!444.12!CEBPD;;chr17:59477233..59477263,+!p1@TBX2!0.58!10.17!TBX2;;chr9:14083467..14083483,-!p4@NFIB!0.58!7.91!NFIB;;chr2:200323414..200323455,-!p1@SATB2!0.58!6.78!SATB2;;chr6:85474299..85474324,-!p1@TBX18!0.58!5.65!TBX18;;chr17:46675420..46675465,-!p3@HOXB6!0.58!3.39!HOXB6;;chr4:81104958..81104981,+!p5@PRDM8!0.58!3.39!PRDM8;;chr4:81105027..81105039,+!p3@PRDM8!0.58!3.39!PRDM8;;chr17:38256822..38256851,-!p1@NR1D1!0.57!25.99!NR1D1;;chr3:52001426..52001447,-!p3@PCBP4!0.57!9.04!PCBP4;;chr10:77161133..77161176,-!p3@ZNF503!0.57!6.78!ZNF503;;chr17:46622114..46622138,-!p4@HOXB2!0.57!4.52!HOXB2;;chr19:56111614..56111634,+!p3@ZNF524!0.57!4.52!ZNF524;;chr1:221052994..221053008,+!p6@HLX!0.57!3.39!HLX;;chr6:34204642..3420466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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000056;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000187;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000192;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000359;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000065;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000948;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001557;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001637;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001981;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002012;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002342;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002385;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003498;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004145;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004807;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005157;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005911;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007100;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007798;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0008814;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0009722 | |||
|ffid_belonging_in_development=CL:0000355,CL:0000222,CL:0000514 | |ffid_belonging_in_development=CL:0000355,CL:0000222,CL:0000514 | ||
|fonse_cell_line= | |fonse_cell_line= | ||
Line 40: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Pulmonary%2520Artery%252c%2520donor2.CNhs11989.11365-117I6.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Pulmonary%2520Artery%252c%2520donor2.CNhs11989.11365-117I6.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Pulmonary%2520Artery%252c%2520donor2.CNhs11989.11365-117I6.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Pulmonary%2520Artery%252c%2520donor2.CNhs11989.11365-117I6.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Pulmonary%2520Artery%252c%2520donor2.CNhs11989.11365-117I6.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11365-117I6 | |id=FF:11365-117I6 | ||
|is_a=EFO:0002091;;FF:0000174 | |is_a=EFO:0002091;;FF:0000174 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs11989 | |library_id=CNhs11989 | ||
| | |library_id_phase_based=2:CNhs11989 | ||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11365 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10015.GAGTGG.11365 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11365 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10015.GAGTGG.11365 | |||
|name=Smooth Muscle Cells - Pulmonary Artery, donor2 | |name=Smooth Muscle Cells - Pulmonary Artery, donor2 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 50: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11989,LSID836,release011,COMPLETED | |profile_hcage=CNhs11989,LSID836,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10015,,, | |profile_srnaseq=SRhi10015,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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Line 66: | Line 82: | ||
|rna_tube_id=117I6 | |rna_tube_id=117I6 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10015.GAGTGG | |||
|sample_age=41 | |sample_age=41 | ||
|sample_category=primary cells | |sample_category=primary cells | ||
Line 89: | Line 106: | ||
|top_motifs=SPZ1:2.00953878858;ZNF423:1.71345722024;HOX{A5,B5}:1.55485358449;EBF1:1.54982145306;GZF1:1.40885539267;GLI1..3:1.40003247409;ZNF238:1.35127665531;GTF2A1,2:1.32723891724;TFAP4:1.22402598134;GCM1,2:1.16265870282;HES1:1.14858069801;ALX4:1.11159765965;TLX1..3_NFIC{dimer}:1.09887108182;EN1,2:1.05186106948;SMAD1..7,9:1.0300820587;NFE2L1:1.00606008312;HAND1,2:0.993560276962;RXRA_VDR{dimer}:0.939061435575;TAL1_TCF{3,4,12}:0.92539792387;NANOG{mouse}:0.878673445513;RXR{A,B,G}:0.787594717069;HSF1,2:0.764141021398;ZNF148:0.748896176142;TEAD1:0.742794749652;IKZF1:0.740726649759;TFAP2{A,C}:0.722329368207;ATF6:0.70871724094;AR:0.690053130212;PPARG:0.689393186445;TOPORS:0.681570885446;TFCP2:0.676169383744;HMX1:0.651519459283;UFEwm:0.642823454362;GFI1B:0.621550633539;ZIC1..3:0.611195281723;ESR1:0.60280054505;XCPE1{core}:0.590484576162;XBP1:0.558158271453;HIC1:0.544529567652;NKX2-2,8:0.494727896776;TBP:0.494515528527;LHX3,4:0.473040861173;GTF2I:0.45164744659;TFAP2B:0.45139962423;PBX1:0.43929523061;POU6F1:0.426868153605;SOX17:0.421705359514;TP53:0.400277551355;NFATC1..3:0.392461731726;SRF:0.392155652184;CDC5L:0.388183250224;ZBTB6:0.382916491847;MYBL2:0.380409067812;HOXA9_MEIS1:0.379712942763;ONECUT1,2:0.365588397642;PAX3,7:0.361735369146;NHLH1,2:0.359509182864;PATZ1:0.356183017803;PAX6:0.355072746647;VSX1,2:0.332807414903;NFE2L2:0.306505482535;MAFB:0.259466409269;TBX4,5:0.259265138442;HOX{A6,A7,B6,B7}:0.254914090508;PAX1,9:0.248867998464;SOX{8,9,10}:0.23477552974;STAT2,4,6:0.216825067619;REST:0.209991837844;NR3C1:0.200697874498;KLF4:0.19975954349;PAX5:0.198394450689;FOXL1:0.198361195062;FOXO1,3,4:0.191404198864;NR5A1,2:0.187148755375;HLF:0.179222570403;MTF1:0.176514215129;POU3F1..4:0.17175512288;MYFfamily:0.164534375855;HNF1A:0.154057780285;PRDM1:0.145043643318;RREB1:0.142738264623;NKX2-1,4:0.135323841323;BACH2:0.135021745045;ALX1:0.133484460794;FOS_FOS{B,L1}_JUN{B,D}:0.122979378011;MTE{core}:0.109819594116;HOX{A4,D4}:0.103919355352;TEF:0.0946279276584;NKX3-2:0.0862913014421;LEF1_TCF7_TCF7L1,2:0.0758106249437;bHLH_family:0.0585391895675;GATA6:0.0152587485144;POU2F1..3:-0.00757422622721;MAZ:-0.0129722122646;DBP:-0.016215917871;AHR_ARNT_ARNT2:-0.0317474471959;NKX3-1:-0.0375952157377;CRX:-0.0424769419531;RFX1:-0.0496806170609;LMO2:-0.0572412522021;NFIX:-0.0610773344527;MED-1{core}:-0.0615241073683;EVI1:-0.0711737040536;EGR1..3:-0.0766363571526;IRF1,2:-0.0797663318666;POU1F1:-0.0832712263199;NANOG:-0.0849505922047;YY1:-0.11247097308;SP1:-0.121663712725;FOXQ1:-0.131747989205;FOSL2:-0.132378964931;HIF1A:-0.141112126669;HNF4A_NR2F1,2:-0.147456732321;NR6A1:-0.195675633836;GFI1:-0.201215229617;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.20140906499;ADNP_IRX_SIX_ZHX:-0.207291856979;CEBPA,B_DDIT3:-0.229524256803;GATA4:-0.236808762204;JUN:-0.249125370058;POU5F1:-0.259200398022;MZF1:-0.261822940535;MEF2{A,B,C,D}:-0.269379055413;NFKB1_REL_RELA:-0.295410350939;ESRRA:-0.306702483405;NFE2:-0.321259277444;SOX2:-0.351988852484;BREu{core}:-0.352275319217;ZFP161:-0.356319839139;PRRX1,2:-0.373862803212;ETS1,2:-0.378861810281;STAT5{A,B}:-0.386109479489;RUNX1..3:-0.403063122605;NFIL3:-0.410875556786;MYB:-0.41915064653;HBP1_HMGB_SSRP1_UBTF:-0.43960658449;EP300:-0.470245892654;DMAP1_NCOR{1,2}_SMARC:-0.474159773456;E2F1..5:-0.488484542368;NKX6-1,2:-0.493415951381;TGIF1:-0.494992169288;FOXP3:-0.508689718889;ATF2:-0.527174815481;SPIB:-0.544988500758;SOX5:-0.545433445301;PAX2:-0.560761985526;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.574232631185;NR1H4:-0.585649213422;ZNF384:-0.588841616373;RORA:-0.628163023911;ARID5B:-0.629496223567;SNAI1..3:-0.637493388949;TLX2:-0.653581388336;SPI1:-0.654186202159;OCT4_SOX2{dimer}:-0.668014168788;ZNF143:-0.678160305805;FOX{I1,J2}:-0.691721605432;PAX8:-0.696939446699;TFDP1:-0.706528042;IRF7:-0.711438996127;PAX4:-0.736232963737;NRF1:-0.766179368331;BPTF:-0.801103588718;STAT1,3:-0.843666197813;ZEB1:-0.870392387872;ELK1,4_GABP{A,B1}:-0.881236796206;ATF4:-0.891058196887;FOX{D1,D2}:-0.897951580543;RFX2..5_RFXANK_RFXAP:-0.89863554661;NKX2-3_NKX2-5:-0.90027605527;CUX2:-0.916526272087;HMGA1,2:-0.929877058191;T:-0.958118931269;ATF5_CREB3:-0.96670915084;NFY{A,B,C}:-0.973664560279;AIRE:-0.984233689613;SREBF1,2:-1.00533702858;CREB1:-1.02229195549;FOX{F1,F2,J1}:-1.03518800323;FOXM1:-1.073619537;ZBTB16:-1.10640704102;ELF1,2,4:-1.11163358518;FOXP1:-1.12576746051;MYOD1:-1.16261223279;FOXA2:-1.19129534461;PITX1..3:-1.19319869036;FOXD3:-1.3097019514;FOXN1:-1.37889665606;PDX1:-1.5023820592;CDX1,2,4:-1.64502374871;IKZF2:-1.67747165888;RBPJ:-1.95705862966 | |top_motifs=SPZ1:2.00953878858;ZNF423:1.71345722024;HOX{A5,B5}:1.55485358449;EBF1:1.54982145306;GZF1:1.40885539267;GLI1..3:1.40003247409;ZNF238:1.35127665531;GTF2A1,2:1.32723891724;TFAP4:1.22402598134;GCM1,2:1.16265870282;HES1:1.14858069801;ALX4:1.11159765965;TLX1..3_NFIC{dimer}:1.09887108182;EN1,2:1.05186106948;SMAD1..7,9:1.0300820587;NFE2L1:1.00606008312;HAND1,2:0.993560276962;RXRA_VDR{dimer}:0.939061435575;TAL1_TCF{3,4,12}:0.92539792387;NANOG{mouse}:0.878673445513;RXR{A,B,G}:0.787594717069;HSF1,2:0.764141021398;ZNF148:0.748896176142;TEAD1:0.742794749652;IKZF1:0.740726649759;TFAP2{A,C}:0.722329368207;ATF6:0.70871724094;AR:0.690053130212;PPARG:0.689393186445;TOPORS:0.681570885446;TFCP2:0.676169383744;HMX1:0.651519459283;UFEwm:0.642823454362;GFI1B:0.621550633539;ZIC1..3:0.611195281723;ESR1:0.60280054505;XCPE1{core}:0.590484576162;XBP1:0.558158271453;HIC1:0.544529567652;NKX2-2,8:0.494727896776;TBP:0.494515528527;LHX3,4:0.473040861173;GTF2I:0.45164744659;TFAP2B:0.45139962423;PBX1:0.43929523061;POU6F1:0.426868153605;SOX17:0.421705359514;TP53:0.400277551355;NFATC1..3:0.392461731726;SRF:0.392155652184;CDC5L:0.388183250224;ZBTB6:0.382916491847;MYBL2:0.380409067812;HOXA9_MEIS1:0.379712942763;ONECUT1,2:0.365588397642;PAX3,7:0.361735369146;NHLH1,2:0.359509182864;PATZ1:0.356183017803;PAX6:0.355072746647;VSX1,2:0.332807414903;NFE2L2:0.306505482535;MAFB:0.259466409269;TBX4,5:0.259265138442;HOX{A6,A7,B6,B7}:0.254914090508;PAX1,9:0.248867998464;SOX{8,9,10}:0.23477552974;STAT2,4,6:0.216825067619;REST:0.209991837844;NR3C1:0.200697874498;KLF4:0.19975954349;PAX5:0.198394450689;FOXL1:0.198361195062;FOXO1,3,4:0.191404198864;NR5A1,2:0.187148755375;HLF:0.179222570403;MTF1:0.176514215129;POU3F1..4:0.17175512288;MYFfamily:0.164534375855;HNF1A:0.154057780285;PRDM1:0.145043643318;RREB1:0.142738264623;NKX2-1,4:0.135323841323;BACH2:0.135021745045;ALX1:0.133484460794;FOS_FOS{B,L1}_JUN{B,D}:0.122979378011;MTE{core}:0.109819594116;HOX{A4,D4}:0.103919355352;TEF:0.0946279276584;NKX3-2:0.0862913014421;LEF1_TCF7_TCF7L1,2:0.0758106249437;bHLH_family:0.0585391895675;GATA6:0.0152587485144;POU2F1..3:-0.00757422622721;MAZ:-0.0129722122646;DBP:-0.016215917871;AHR_ARNT_ARNT2:-0.0317474471959;NKX3-1:-0.0375952157377;CRX:-0.0424769419531;RFX1:-0.0496806170609;LMO2:-0.0572412522021;NFIX:-0.0610773344527;MED-1{core}:-0.0615241073683;EVI1:-0.0711737040536;EGR1..3:-0.0766363571526;IRF1,2:-0.0797663318666;POU1F1:-0.0832712263199;NANOG:-0.0849505922047;YY1:-0.11247097308;SP1:-0.121663712725;FOXQ1:-0.131747989205;FOSL2:-0.132378964931;HIF1A:-0.141112126669;HNF4A_NR2F1,2:-0.147456732321;NR6A1:-0.195675633836;GFI1:-0.201215229617;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.20140906499;ADNP_IRX_SIX_ZHX:-0.207291856979;CEBPA,B_DDIT3:-0.229524256803;GATA4:-0.236808762204;JUN:-0.249125370058;POU5F1:-0.259200398022;MZF1:-0.261822940535;MEF2{A,B,C,D}:-0.269379055413;NFKB1_REL_RELA:-0.295410350939;ESRRA:-0.306702483405;NFE2:-0.321259277444;SOX2:-0.351988852484;BREu{core}:-0.352275319217;ZFP161:-0.356319839139;PRRX1,2:-0.373862803212;ETS1,2:-0.378861810281;STAT5{A,B}:-0.386109479489;RUNX1..3:-0.403063122605;NFIL3:-0.410875556786;MYB:-0.41915064653;HBP1_HMGB_SSRP1_UBTF:-0.43960658449;EP300:-0.470245892654;DMAP1_NCOR{1,2}_SMARC:-0.474159773456;E2F1..5:-0.488484542368;NKX6-1,2:-0.493415951381;TGIF1:-0.494992169288;FOXP3:-0.508689718889;ATF2:-0.527174815481;SPIB:-0.544988500758;SOX5:-0.545433445301;PAX2:-0.560761985526;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.574232631185;NR1H4:-0.585649213422;ZNF384:-0.588841616373;RORA:-0.628163023911;ARID5B:-0.629496223567;SNAI1..3:-0.637493388949;TLX2:-0.653581388336;SPI1:-0.654186202159;OCT4_SOX2{dimer}:-0.668014168788;ZNF143:-0.678160305805;FOX{I1,J2}:-0.691721605432;PAX8:-0.696939446699;TFDP1:-0.706528042;IRF7:-0.711438996127;PAX4:-0.736232963737;NRF1:-0.766179368331;BPTF:-0.801103588718;STAT1,3:-0.843666197813;ZEB1:-0.870392387872;ELK1,4_GABP{A,B1}:-0.881236796206;ATF4:-0.891058196887;FOX{D1,D2}:-0.897951580543;RFX2..5_RFXANK_RFXAP:-0.89863554661;NKX2-3_NKX2-5:-0.90027605527;CUX2:-0.916526272087;HMGA1,2:-0.929877058191;T:-0.958118931269;ATF5_CREB3:-0.96670915084;NFY{A,B,C}:-0.973664560279;AIRE:-0.984233689613;SREBF1,2:-1.00533702858;CREB1:-1.02229195549;FOX{F1,F2,J1}:-1.03518800323;FOXM1:-1.073619537;ZBTB16:-1.10640704102;ELF1,2,4:-1.11163358518;FOXP1:-1.12576746051;MYOD1:-1.16261223279;FOXA2:-1.19129534461;PITX1..3:-1.19319869036;FOXD3:-1.3097019514;FOXN1:-1.37889665606;PDX1:-1.5023820592;CDX1,2,4:-1.64502374871;IKZF2:-1.67747165888;RBPJ:-1.95705862966 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11365-117I6;search_select_hide=table117:FF:11365-117I6 | |||
}} | }} |
Latest revision as of 17:55, 4 June 2020
Name: | Smooth Muscle Cells - Pulmonary Artery, donor2 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs11989 |
Sample type: | primary cells |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11989
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11989
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.665 |
10 | 10 | 0.868 |
100 | 100 | 0.884 |
101 | 101 | 0.824 |
102 | 102 | 0.648 |
103 | 103 | 0.294 |
104 | 104 | 0.583 |
105 | 105 | 0.918 |
106 | 106 | 0.0229 |
107 | 107 | 0.0165 |
108 | 108 | 0.472 |
109 | 109 | 0.272 |
11 | 11 | 0.159 |
110 | 110 | 0.305 |
111 | 111 | 0.647 |
112 | 112 | 0.407 |
113 | 113 | 0.115 |
114 | 114 | 0.195 |
115 | 115 | 0.203 |
116 | 116 | 0.0462 |
117 | 117 | 0.937 |
118 | 118 | 0.739 |
119 | 119 | 0.45 |
12 | 12 | 0.795 |
120 | 120 | 0.755 |
121 | 121 | 0.837 |
122 | 122 | 0.218 |
123 | 123 | 0.141 |
124 | 124 | 0.6 |
125 | 125 | 0.872 |
126 | 126 | 0.597 |
127 | 127 | 0.709 |
128 | 128 | 0.0557 |
129 | 129 | 0.974 |
13 | 13 | 0.416 |
130 | 130 | 0.211 |
131 | 131 | 0.626 |
132 | 132 | 0.394 |
133 | 133 | 0.399 |
134 | 134 | 0.903 |
135 | 135 | 0.357 |
136 | 136 | 0.653 |
137 | 137 | 0.615 |
138 | 138 | 0.444 |
139 | 139 | 0.263 |
14 | 14 | 0.728 |
140 | 140 | 0.535 |
141 | 141 | 0.472 |
142 | 142 | 0.234 |
143 | 143 | 0.268 |
144 | 144 | 0.209 |
145 | 145 | 0.0965 |
146 | 146 | 0.182 |
147 | 147 | 0.206 |
148 | 148 | 0.892 |
149 | 149 | 0.0527 |
15 | 15 | 0.998 |
150 | 150 | 0.339 |
151 | 151 | 0.479 |
152 | 152 | 0.0534 |
153 | 153 | 0.648 |
154 | 154 | 0.756 |
155 | 155 | 0.0331 |
156 | 156 | 0.426 |
157 | 157 | 0.621 |
158 | 158 | 0.0145 |
159 | 159 | 0.276 |
16 | 16 | 0.0582 |
160 | 160 | 0.0747 |
161 | 161 | 0.718 |
162 | 162 | 0.151 |
163 | 163 | 0.995 |
164 | 164 | 0.501 |
165 | 165 | 0.995 |
166 | 166 | 0.469 |
167 | 167 | 0.719 |
168 | 168 | 0.488 |
169 | 169 | 0.0433 |
17 | 17 | 0.184 |
18 | 18 | 0.0992 |
19 | 19 | 0.0571 |
2 | 2 | 0.162 |
20 | 20 | 0.264 |
21 | 21 | 0.33 |
22 | 22 | 0.121 |
23 | 23 | 0.104 |
24 | 24 | 0.775 |
25 | 25 | 0.168 |
26 | 26 | 0.0143 |
27 | 27 | 0.135 |
28 | 28 | 0.22 |
29 | 29 | 0.849 |
3 | 3 | 0.544 |
30 | 30 | 0.165 |
31 | 31 | 0.419 |
32 | 32 | 6.46538e-9 |
33 | 33 | 0.821 |
34 | 34 | 0.343 |
35 | 35 | 0.702 |
36 | 36 | 0.126 |
37 | 37 | 0.325 |
38 | 38 | 0.739 |
39 | 39 | 0.172 |
4 | 4 | 0.931 |
40 | 40 | 0.755 |
41 | 41 | 0.988 |
42 | 42 | 0.832 |
43 | 43 | 0.217 |
44 | 44 | 0.434 |
45 | 45 | 0.355 |
46 | 46 | 0.0904 |
47 | 47 | 0.667 |
48 | 48 | 0.303 |
49 | 49 | 0.372 |
5 | 5 | 0.688 |
50 | 50 | 0.455 |
51 | 51 | 0.323 |
52 | 52 | 0.53 |
53 | 53 | 0.467 |
54 | 54 | 0.4 |
55 | 55 | 0.0896 |
56 | 56 | 0.508 |
57 | 57 | 0.813 |
58 | 58 | 0.562 |
59 | 59 | 0.0282 |
6 | 6 | 0.826 |
60 | 60 | 0.405 |
61 | 61 | 0.409 |
62 | 62 | 0.846 |
63 | 63 | 0.236 |
64 | 64 | 0.507 |
65 | 65 | 0.139 |
66 | 66 | 0.401 |
67 | 67 | 0.652 |
68 | 68 | 0.155 |
69 | 69 | 0.401 |
7 | 7 | 0.513 |
70 | 70 | 0.00742 |
71 | 71 | 0.263 |
72 | 72 | 0.876 |
73 | 73 | 0.0827 |
74 | 74 | 0.562 |
75 | 75 | 0.7 |
76 | 76 | 0.608 |
77 | 77 | 0.0236 |
78 | 78 | 0.406 |
79 | 79 | 0.00497 |
8 | 8 | 0.0374 |
80 | 80 | 0.387 |
81 | 81 | 0.405 |
82 | 82 | 0.657 |
83 | 83 | 0.688 |
84 | 84 | 0.712 |
85 | 85 | 0.0224 |
86 | 86 | 0.825 |
87 | 87 | 0.212 |
88 | 88 | 0.183 |
89 | 89 | 0.0577 |
9 | 9 | 0.292 |
90 | 90 | 0.877 |
91 | 91 | 0.275 |
92 | 92 | 0.166 |
93 | 93 | 0.943 |
94 | 94 | 0.822 |
95 | 95 | 0.623 |
96 | 96 | 0.771 |
97 | 97 | 0.493 |
98 | 98 | 0.766 |
99 | 99 | 0.00449 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11989
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000174 human smooth muscle cell of pulmonary artery sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0000359 (vascular associated smooth muscle cell)
0002591 (smooth muscle cell of the pulmonary artery)
UBERON: Anatomy
0000468 (multi-cellular organism)
0001637 (artery)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004121 (ectoderm-derived structure)
0004119 (endoderm-derived structure)
0010314 (structure with developmental contribution from neural crest)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000077 (mixed endoderm/mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0005911 (endo-epithelium)
0000477 (anatomical cluster)
0000467 (anatomical system)
0010313 (neural crest-derived structure)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0010371 (ecto-epithelium)
0003509 (arterial blood vessel)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0000078 (mixed ectoderm/mesoderm/endoderm-derived structure)
0002049 (vasculature)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0002012 (pulmonary artery)
0004535 (cardiovascular system)
0004572 (arterial system)
0004537 (blood vasculature)
0008886 (pulmonary vascular system)
0001009 (circulatory system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000167 (smooth muscle cell sample)
0000174 (human smooth muscle cell of pulmonary artery sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)