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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@DRS008309
|DRA_sample_Accession=CAGE@SAMD00005360
|accession_numbers=CAGE;DRX008417;DRR009289;DRZ000714;DRZ002099
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005360
|accession_numbers=CAGE;DRX008417;DRR009289;DRZ000714;DRZ002099;DRZ012064;DRZ013449
|accession_numbers_RNASeq=sRNA-Seq;DRX037161;DRR041527;DRZ007169
|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002334,CL:0002582
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002334,CL:0002582
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr16:86544113..86544145,+!p1@FOXF1!1.94!105.93!FOXF1;;chr2:19558373..19558392,-!p1@OSR1!1.53!86.72!OSR1;;chr8:55370487..55370503,+!p1@SOX17!1.53!33.23!SOX17;;chr1:170632285..170632309,+!p1@PRRX1!1.46!31.16!PRRX1;;chr14:29235961..29236008,+!p1@FOXG1!1.45!27.00!FOXG1;;chr1:170633348..170633399,+!p2@PRRX1!1.42!34.27!PRRX1;;chr12:66218598..66218645,+!p2@HMGA2!1.37!100.74!HMGA2;;chr14:29236269..29236285,+!p3@FOXG1!1.36!21.81!FOXG1;;chr1:170633262..170633285,+!p3@PRRX1!1.34!23.89!PRRX1;;chr6:134210243..134210257,+!p1@TCF21!1.33!20.25!TCF21;;chr12:66218836..66218888,+!p1@HMGA2!1.30!173.95!HMGA2;;chr12:66218255..66218304,+!p3@HMGA2!1.29!48.81!HMGA2;;chr17:1959369..1959388,+!p2@HIC1!1.26!44.66!HIC1;;chr2:239756671..239756732,+!p1@TWIST2!1.25!53.48!TWIST2;;chr8:11561684..11561751,+!p1@GATA4!1.25!16.62!GATA4;;chr12:54447637..54447659,+!p4@HOXC4!1.23!16.10!HOXC4;;chr14:29234581..29234601,+!p2@FOXG1!1.22!15.58!FOXG1;;chr15:57511609..57511651,+!p2@TCF12!1.20!24.92!TCF12;;chr9:132427972..132428056,+!p1@PRRX2!1.16!17.65!PRRX2;;chr2:102091566..102091581,-!p1@RFX8!1.13!12.46!RFX8;;chr17:46622070..46622109,-!p1@HOXB2!1.12!27.00!HOXB2;;chr2:239756739..239756755,+!p2@TWIST2!1.12!20.77!TWIST2;;chr6:34204921..34204939,+!p3@HMGA1!1.10!345.82!HMGA1;;chr12:66218183..66218209,+!p4@HMGA2!1.10!22.33!HMGA2;;chr11:46299539..46299620,+!p2@CREB3L1!1.08!18.69!CREB3L1;;chr12:66218212..66218244,+!p5@HMGA2!1.08!16.10!HMGA2;;chr11:65686802..65686818,+!p6@DRAP1!1.06!18.17!DRAP1;;chr17:46622114..46622138,-!p4@HOXB2!1.06!16.10!HOXB2;;chr2:102091144..102091183,-!p2@RFX8!1.06!10.39!RFX8;;chr17:46622205..46622218,-!p3@HOXB2!1.05!11.94!HOXB2;;chr4:174450089..174450153,-!p2@HAND2!1.04!9.87!HAND2;;chr11:34642612..34642646,+!p1@EHF!1.04!9.87!EHF;;chr3:141087393..141087426,+!p3@ZBTB38!1.02!38.42!ZBTB38;;chr11:46299199..46299233,+!p1@CREB3L1!1.01!48.29!CREB3L1;;chr17:59477233..59477263,+!p1@TBX2!1.01!29.08!TBX2;;chr6:1312325..1312340,+!p1@FOXQ1!1.01!15.06!FOXQ1;;chr19:42636586..42636607,-!p1@POU2F2!0.99!24.92!POU2F2;;chr12:54447599..54447630,+!p3@HOXC4!0.99!10.90!HOXC4;;chr17:46622440..46622477,-!p5@HOXB2!0.99!9.87!HOXB2;;chrY:21906594..21906622,-!p1@KDM5D!0.99!8.83!KDM5D;;chr16:86600426..86600441,+!p1@FOXC2!0.97!21.29!FOXC2;;chr1:170632250..170632277,+!p7@PRRX1!0.97!8.31!PRRX1;;chr7:35293685..35293718,-!p1@TBX20!0.97!8.31!TBX20;;chr17:46675420..46675465,-!p3@HOXB6!0.96!9.35!HOXB6;;chr8:49833948..49833973,-!p2@SNAI2!0.95!52.44!SNAI2;;chr11:65687362..65687436,+!p3@DRAP1!0.95!37.39!DRAP1;;chr11:65686732..65686756,+!p2@DRAP1!0.95!34.79!DRAP1;;chr1:170632959..170632987,+!p4@PRRX1!0.93!8.31!PRRX1;;chrY:2803415..2803468,+!p1@ZFY!0.92!7.27!ZFY;;chr10:131762504..131762555,-!p1@EBF3!0.92!7.27!EBF3;;chr12:66218904..66218913,+!p11@HMGA2!0.92!7.27!HMGA2;;chr2:102091478..102091490,-!p3@RFX8!0.92!7.27!RFX8;;chr1:170632137..170632172,+!p10@PRRX1!0.89!6.75!PRRX1;;chr12:54447686..54447704,+!p5@HOXC4!0.89!6.75!HOXC4;;chr12:66218923..66218934,+!p14@HMGA2!0.89!6.75!HMGA2;;chr12:66218378..66218401,+!p6@HMGA2!0.88!10.39!HMGA2;;chr7:19157248..19157268,-!p1@TWIST1!0.86!18.17!TWIST1;;chr3:141105705..141105770,+!p4@ZBTB38!0.86!7.79!ZBTB38;;chr2:101591314..101591333,+!p2@NPAS2!0.86!7.27!NPAS2;;chr8:25902876..25902936,-!p1@EBF2!0.86!6.23!EBF2;;chr15:67430351..67430366,+!p10@SMAD3!0.86!6.23!SMAD3;;chr8:49833978..49833996,-!p1@SNAI2!0.84!131.37!SNAI2;;chr20:6748325..6748352,+!p1@BMP2!0.84!8.83!BMP2;;chr15:96869255..96869291,+!p6@NR2F2!0.83!10.90!NR2F2;;chr17:46621146..46621180,-!p10@HOXB2!0.83!5.71!HOXB2;;chr19:46801639..46801699,+!p1@HIF3A!0.83!5.71!HIF3A;;chr4:174451370..174451387,-!p1@HAND2!0.83!5.71!HAND2;;chr7:27183263..27183284,-!p2@HOXA5!0.83!5.71!HOXA5;;chr9:132427883..132427951,+!p2@PRRX2!0.83!5.71!PRRX2;;chr12:77459306..77459365,-!p1@E2F7!0.82!74.77!E2F7;;chr15:96873984..96873999,+!p3@NR2F2!0.82!44.66!NR2F2;;chr15:42749722..42749739,-!p2@ZFP106!0.82!10.39!ZFP106;;chr15:96874244..96874259,+!p5@NR2F2!0.81!14.02!NR2F2;;chr17:41622925..41622976,-!p3@ETV4!0.80!8.31!ETV4;;chr3:157823517..157823562,-!p1@SHOX2!0.80!5.71!SHOX2;;chr1:158979792..158979814,+!p2@IFI16!0.79!53.48!IFI16;;chr5:321810..321877,+!p1@AHRR!0.79!17.65!AHRR;;chr17:46622229..46622257,-!p6@HOXB2!0.79!6.23!HOXB2;;chr7:27183291..27183324,-!p1@HOXA5!0.79!5.19!HOXA5;;chr1:170632115..170632136,+!p9@PRRX1!0.79!5.19!PRRX1;;chr1:44513995..44514031,+!p1@KLF17!0.79!5.19!KLF17;;chr7:19157043..19157088,-!p2@TWIST1!0.78!13.50!TWIST1;;chr19:35455110..35455149,-!p1@ZNF792!0.78!10.39!ZNF792;;chr15:96875041..96875052,+!p17@NR2F2!0.77!7.27!NR2F2;;chr11:65686776..65686787,+!p9@DRAP1!0.76!5.71!DRAP1;;chr3:141121847..141121868,+!p5@ZBTB38!0.75!7.27!ZBTB38;;chr7:14028488..14028516,-!p2@ETV1!0.75!5.19!ETV1;;chr12:66358080..66358094,+!p15@HMGA2!0.75!4.67!HMGA2;;chr17:46622175..46622186,-!p12@HOXB2!0.75!4.67!HOXB2;;chr17:46671108..46671147,-!p1@HOXB5!0.75!4.67!HOXB5;;chr1:170632723..170632739,+!p8@PRRX1!0.75!4.67!PRRX1;;chr1:170633058..170633084,+!p5@PRRX1!0.75!4.67!PRRX1;;chr15:83953397..83953425,-!p1@BNC1!0.74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|expression_enrichment_score=chr16:86544113..86544145,+!p1@FOXF1!1.94!105.93!FOXF1;;chr2:19558373..19558392,-!p1@OSR1!1.53!86.72!OSR1;;chr8:55370487..55370503,+!p1@SOX17!1.53!33.23!SOX17;;chr1:170632285..170632309,+!p1@PRRX1!1.46!31.16!PRRX1;;chr14:29235961..29236008,+!p1@FOXG1!1.45!27.00!FOXG1;;chr1:170633348..170633399,+!p2@PRRX1!1.42!34.27!PRRX1;;chr12:66218598..66218645,+!p2@HMGA2!1.37!100.74!HMGA2;;chr14:29236269..29236285,+!p3@FOXG1!1.36!21.81!FOXG1;;chr1:170633262..170633285,+!p3@PRRX1!1.34!23.89!PRRX1;;chr6:134210243..134210257,+!p1@TCF21!1.33!20.25!TCF21;;chr12:66218836..66218888,+!p1@HMGA2!1.30!173.95!HMGA2;;chr12:66218255..66218304,+!p3@HMGA2!1.29!48.81!HMGA2;;chr17:1959369..1959388,+!p2@HIC1!1.26!44.66!HIC1;;chr2:239756671..239756732,+!p1@TWIST2!1.25!53.48!TWIST2;;chr8:11561684..11561751,+!p1@GATA4!1.25!16.62!GATA4;;chr12:54447637..54447659,+!p4@HOXC4!1.23!16.10!HOXC4;;chr14:29234581..29234601,+!p2@FOXG1!1.22!15.58!FOXG1;;chr15:57511609..57511651,+!p2@TCF12!1.20!24.92!TCF12;;chr9:132427972..132428056,+!p1@PRRX2!1.16!17.65!PRRX2;;chr2:102091566..102091581,-!p1@RFX8!1.13!12.46!RFX8;;chr17:46622070..46622109,-!p1@HOXB2!1.12!27.00!HOXB2;;chr2:239756739..239756755,+!p2@TWIST2!1.12!20.77!TWIST2;;chr6:34204921..34204939,+!p3@HMGA1!1.10!345.82!HMGA1;;chr12:66218183..66218209,+!p4@HMGA2!1.10!22.33!HMGA2;;chr11:46299539..46299620,+!p2@CREB3L1!1.08!18.69!CREB3L1;;chr12:66218212..66218244,+!p5@HMGA2!1.08!16.10!HMGA2;;chr11:65686802..65686818,+!p6@DRAP1!1.06!18.17!DRAP1;;chr17:46622114..46622138,-!p4@HOXB2!1.06!16.10!HOXB2;;chr2:102091144..102091183,-!p2@RFX8!1.06!10.39!RFX8;;chr17:46622205..46622218,-!p3@HOXB2!1.05!11.94!HOXB2;;chr4:174450089..174450153,-!p2@HAND2!1.04!9.87!HAND2;;chr11:34642612..34642646,+!p1@EHF!1.04!9.87!EHF;;chr3:141087393..141087426,+!p3@ZBTB38!1.02!38.42!ZBTB38;;chr11:46299199..46299233,+!p1@CREB3L1!1.01!48.29!CREB3L1;;chr17:59477233..59477263,+!p1@TBX2!1.01!29.08!TBX2;;chr6:1312325..1312340,+!p1@FOXQ1!1.01!15.06!FOXQ1;;chr19:42636586..42636607,-!p1@POU2F2!0.99!24.92!POU2F2;;chr12:54447599..54447630,+!p3@HOXC4!0.99!10.90!HOXC4;;chr17:46622440..46622477,-!p5@HOXB2!0.99!9.87!HOXB2;;chrY:21906594..21906622,-!p1@KDM5D!0.99!8.83!KDM5D;;chr16:86600426..86600441,+!p1@FOXC2!0.97!21.29!FOXC2;;chr1:170632250..170632277,+!p7@PRRX1!0.97!8.31!PRRX1;;chr7:35293685..35293718,-!p1@TBX20!0.97!8.31!TBX20;;chr17:46675420..46675465,-!p3@HOXB6!0.96!9.35!HOXB6;;chr8:49833948..49833973,-!p2@SNAI2!0.95!52.44!SNAI2;;chr11:65687362..65687436,+!p3@DRAP1!0.95!37.39!DRAP1;;chr11:65686732..65686756,+!p2@DRAP1!0.95!34.79!DRAP1;;chr1:170632959..170632987,+!p4@PRRX1!0.93!8.31!PRRX1;;chrY:2803415..2803468,+!p1@ZFY!0.92!7.27!ZFY;;chr10:131762504..131762555,-!p1@EBF3!0.92!7.27!EBF3;;chr12:66218904..66218913,+!p11@HMGA2!0.92!7.27!HMGA2;;chr2:102091478..102091490,-!p3@RFX8!0.92!7.27!RFX8;;chr1:170632137..170632172,+!p10@PRRX1!0.89!6.75!PRRX1;;chr12:54447686..54447704,+!p5@HOXC4!0.89!6.75!HOXC4;;chr12:66218923..66218934,+!p14@HMGA2!0.89!6.75!HMGA2;;chr12:66218378..66218401,+!p6@HMGA2!0.88!10.39!HMGA2;;chr7:19157248..19157268,-!p1@TWIST1!0.86!18.17!TWIST1;;chr3:141105705..141105770,+!p4@ZBTB38!0.86!7.79!ZBTB38;;chr2:101591314..101591333,+!p2@NPAS2!0.86!7.27!NPAS2;;chr8:25902876..25902936,-!p1@EBF2!0.86!6.23!EBF2;;chr15:67430351..67430366,+!p10@SMAD3!0.86!6.23!SMAD3;;chr8:49833978..49833996,-!p1@SNAI2!0.84!131.37!SNAI2;;chr20:6748325..6748352,+!p1@BMP2!0.84!8.83!BMP2;;chr15:96869255..96869291,+!p6@NR2F2!0.83!10.90!NR2F2;;chr17:46621146..46621180,-!p10@HOXB2!0.83!5.71!HOXB2;;chr19:46801639..46801699,+!p1@HIF3A!0.83!5.71!HIF3A;;chr4:174451370..174451387,-!p1@HAND2!0.83!5.71!HAND2;;chr7:27183263..27183284,-!p2@HOXA5!0.83!5.71!HOXA5;;chr9:132427883..132427951,+!p2@PRRX2!0.83!5.71!PRRX2;;chr12:77459306..77459365,-!p1@E2F7!0.82!74.77!E2F7;;chr15:96873984..96873999,+!p3@NR2F2!0.82!44.66!NR2F2;;chr15:42749722..42749739,-!p2@ZFP106!0.82!10.39!ZFP106;;chr15:96874244..96874259,+!p5@NR2F2!0.81!14.02!NR2F2;;chr17:41622925..41622976,-!p3@ETV4!0.80!8.31!ETV4;;chr3:157823517..157823562,-!p1@SHOX2!0.80!5.71!SHOX2;;chr1:158979792..158979814,+!p2@IFI16!0.79!53.48!IFI16;;chr5:321810..321877,+!p1@AHRR!0.79!17.65!AHRR;;chr17:46622229..46622257,-!p6@HOXB2!0.79!6.23!HOXB2;;chr7:27183291..27183324,-!p1@HOXA5!0.79!5.19!HOXA5;;chr1:170632115..170632136,+!p9@PRRX1!0.79!5.19!PRRX1;;chr1:44513995..44514031,+!p1@KLF17!0.79!5.19!KLF17;;chr7:19157043..19157088,-!p2@TWIST1!0.78!13.50!TWIST1;;chr19:35455110..35455149,-!p1@ZNF792!0.78!10.39!ZNF792;;chr15:96875041..96875052,+!p17@NR2F2!0.77!7.27!NR2F2;;chr11:65686776..65686787,+!p9@DRAP1!0.76!5.71!DRAP1;;chr3:141121847..141121868,+!p5@ZBTB38!0.75!7.27!ZBTB38;;chr7:14028488..14028516,-!p2@ETV1!0.75!5.19!ETV1;;chr12:66358080..66358094,+!p15@HMGA2!0.75!4.67!HMGA2;;chr17:46622175..46622186,-!p12@HOXB2!0.75!4.67!HOXB2;;chr17:46671108..46671147,-!p1@HOXB5!0.75!4.67!HOXB5;;chr1:170632723..170632739,+!p8@PRRX1!0.75!4.67!PRRX1;;chr1:170633058..170633084,+!p5@PRRX1!0.75!4.67!PRRX1;;chr15:83953397..83953425,-!p1@BNC1!0.74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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000057;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002334;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002582
|ffid_belonging_in_development=CL:0000134
|ffid_belonging_in_development=CL:0000134
|fonse_cell_line=
|fonse_cell_line=
Line 40: Line 44:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Preadipocyte%2520-%2520visceral%252c%2520donor2.CNhs11982.11357-117H7.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Preadipocyte%2520-%2520visceral%252c%2520donor2.CNhs11982.11357-117H7.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Preadipocyte%2520-%2520visceral%252c%2520donor2.CNhs11982.11357-117H7.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Preadipocyte%2520-%2520visceral%252c%2520donor2.CNhs11982.11357-117H7.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Preadipocyte%2520-%2520visceral%252c%2520donor2.CNhs11982.11357-117H7.hg38.nobarcode.ctss.bed.gz
|id=FF:11357-117H7
|id=FF:11357-117H7
|is_a=EFO:0002091;;FF:0000143
|is_a=EFO:0002091;;FF:0000143
|is_obsolete=
|is_obsolete=
|library_id=CNhs11982
|library_id=CNhs11982
|library_ids=CNhs11982
|library_id_phase_based=2:CNhs11982
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11357
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10010.CGTACG.11357
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11357
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10010.CGTACG.11357
|name=Preadipocyte - visceral, donor2
|name=Preadipocyte - visceral, donor2
|namespace=FANTOM5
|namespace=FANTOM5
Line 50: Line 65:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs11982,LSID836,release011,COMPLETED
|profile_hcage=CNhs11982,LSID836,release011,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=SRhi10010,,,
|profile_srnaseq=SRhi10010,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|sample_category=primary cells
Line 89: Line 106:
|top_motifs=ALX4:2.24660337341;NKX2-2,8:2.0611678281;GZF1:1.74455891267;TAL1_TCF{3,4,12}:1.66044006579;NKX3-1:1.62828803762;UFEwm:1.50215090949;HOX{A5,B5}:1.39106167137;HSF1,2:1.28604303952;ZNF238:1.23192692236;ALX1:1.22822551312;SMAD1..7,9:1.15280051726;ZBTB6:1.06840503351;KLF4:1.06459140548;PAX1,9:1.05705420256;SPZ1:1.00554804108;HES1:0.975039463995;TFAP4:0.936751649923;EN1,2:0.9350394502;GLI1..3:0.934239554511;XBP1:0.915164407081;ZNF423:0.907332943014;TLX1..3_NFIC{dimer}:0.898477029068;RXR{A,B,G}:0.897931979597;PPARG:0.873049319781;GATA4:0.863945468341;POU3F1..4:0.853452521589;HMX1:0.828387304708;NFE2L2:0.802454929731;PAX8:0.788863614789;MYFfamily:0.758230829842;EBF1:0.756011010045;TFCP2:0.754574585716;ZIC1..3:0.750937715795;NR3C1:0.701214876745;TBX4,5:0.673951253564;NFIX:0.656053136259;FOXM1:0.602494027514;T:0.599611061512;TEF:0.599346348759;MYBL2:0.583066393251;NFE2L1:0.569656645436;ESRRA:0.563915312788;ZNF384:0.562934503524;TOPORS:0.560969244145;ATF6:0.492312073208;EVI1:0.489772590566;TEAD1:0.479030856967;YY1:0.456065060834;HAND1,2:0.430456047553;NANOG{mouse}:0.427323446938;TP53:0.416550825395;PRDM1:0.409912236998;FOX{I1,J2}:0.406932720521;IKZF1:0.344750327733;ARID5B:0.332296390087;BACH2:0.331570892519;MYB:0.328952880263;IRF1,2:0.320667044446;TBP:0.315647876921;NFATC1..3:0.302222737114;NR1H4:0.294004361891;HLF:0.280335499349;MZF1:0.276555958767;HOXA9_MEIS1:0.270982396162;ONECUT1,2:0.270861935075;GCM1,2:0.269883711384;FOS_FOS{B,L1}_JUN{B,D}:0.269866153879;PAX4:0.265296404455;GTF2I:0.253593414741;MAFB:0.248902408818;FOXQ1:0.230200159187;ESR1:0.223291823005;SRF:0.222548971339;bHLH_family:0.196068178641;HOX{A4,D4}:0.187650925941;RXRA_VDR{dimer}:0.156595590059;HMGA1,2:0.146511894719;HBP1_HMGB_SSRP1_UBTF:0.141323308836;PAX3,7:0.131588698475;CDC5L:0.12871404041;HOX{A6,A7,B6,B7}:0.113284707325;GFI1B:0.085489653678;PBX1:0.0841300784535;FOXL1:0.0724805710733;MTF1:0.0718169141794;TLX2:0.0577702423438;E2F1..5:0.0566523445592;LMO2:0.0558894669898;GTF2A1,2:0.0541713922751;PATZ1:0.0198762752637;ADNP_IRX_SIX_ZHX:0.0196480923199;TFDP1:0.012410963729;POU6F1:0.0110595661952;REST:0.00197252686869;PAX5:-0.000287317472401;NHLH1,2:-0.00728305910523;ZNF148:-0.00953393137328;NFIL3:-0.0113948107094;HNF1A:-0.0210283885579;CDX1,2,4:-0.0330500244911;SOX17:-0.0412247287336;FOSL2:-0.0535321257452;IRF7:-0.0571284275939;RFX1:-0.0608409683287;RUNX1..3:-0.0611452312912;ZBTB16:-0.0693067895511;FOXO1,3,4:-0.0737918535012;NKX3-2:-0.0858009477008;LEF1_TCF7_TCF7L1,2:-0.103741961306;NKX6-1,2:-0.116572850068;POU5F1:-0.119841194829;GFI1:-0.120536090366;MTE{core}:-0.12744618086;PRRX1,2:-0.134168706729;LHX3,4:-0.138228995503;RREB1:-0.138817475646;FOXD3:-0.139486134922;TFAP2{A,C}:-0.141204874434;NFKB1_REL_RELA:-0.144190455512;STAT2,4,6:-0.150906580645;HIC1:-0.161868208445;NKX2-1,4:-0.172178426448;BPTF:-0.172808478526;NFE2:-0.185990059853;ELF1,2,4:-0.190203936186;HNF4A_NR2F1,2:-0.227746684308;EGR1..3:-0.229584799197;ZFP161:-0.234698738161;DMAP1_NCOR{1,2}_SMARC:-0.254496757669;AIRE:-0.256350306425;JUN:-0.256429636339;ELK1,4_GABP{A,B1}:-0.263502826919;XCPE1{core}:-0.271422015491;AHR_ARNT_ARNT2:-0.27596875528;MED-1{core}:-0.281975774529;CEBPA,B_DDIT3:-0.284963134623;IKZF2:-0.294580035119;SPI1:-0.304234552966;SOX2:-0.308505080273;RFX2..5_RFXANK_RFXAP:-0.31345363874;ETS1,2:-0.328704719971;TFAP2B:-0.329522541558;NR6A1:-0.33356460366;NR5A1,2:-0.354276518143;CRX:-0.366636412431;POU2F1..3:-0.372445079441;DBP:-0.392566895809;ZNF143:-0.420619006326;SOX5:-0.426258935667;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.438191331074;MAZ:-0.455908561724;NRF1:-0.497853959631;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.520887293298;PDX1:-0.523365322632;SPIB:-0.524308031345;NKX2-3_NKX2-5:-0.54581571654;MEF2{A,B,C,D}:-0.622370232553;AR:-0.644294128887;SP1:-0.681673359406;CREB1:-0.694527412424;PAX6:-0.737020965147;PAX2:-0.738018310592;EP300:-0.744519600443;SNAI1..3:-0.751565437902;FOXN1:-0.753643550666;ATF5_CREB3:-0.761348281204;STAT5{A,B}:-0.763519155727;ATF2:-0.773726248321;OCT4_SOX2{dimer}:-0.785081163621;CUX2:-0.793298738071;VSX1,2:-0.810794204973;GATA6:-0.833987725551;TGIF1:-0.847112143232;ZEB1:-0.858576733664;FOXA2:-0.866828359819;RBPJ:-0.86971960047;MYOD1:-0.875846151458;NFY{A,B,C}:-0.879490889231;PITX1..3:-0.88704466379;STAT1,3:-0.890217026463;SOX{8,9,10}:-0.898392089787;SREBF1,2:-0.903938815663;FOXP1:-0.9113549349;RORA:-0.952648537723;POU1F1:-1.01140678192;NANOG:-1.02440353276;FOXP3:-1.04070599407;FOX{D1,D2}:-1.10737575857;ATF4:-1.17174533797;HIF1A:-1.2534977376;BREu{core}:-1.31310888136;FOX{F1,F2,J1}:-1.44681438811
|top_motifs=ALX4:2.24660337341;NKX2-2,8:2.0611678281;GZF1:1.74455891267;TAL1_TCF{3,4,12}:1.66044006579;NKX3-1:1.62828803762;UFEwm:1.50215090949;HOX{A5,B5}:1.39106167137;HSF1,2:1.28604303952;ZNF238:1.23192692236;ALX1:1.22822551312;SMAD1..7,9:1.15280051726;ZBTB6:1.06840503351;KLF4:1.06459140548;PAX1,9:1.05705420256;SPZ1:1.00554804108;HES1:0.975039463995;TFAP4:0.936751649923;EN1,2:0.9350394502;GLI1..3:0.934239554511;XBP1:0.915164407081;ZNF423:0.907332943014;TLX1..3_NFIC{dimer}:0.898477029068;RXR{A,B,G}:0.897931979597;PPARG:0.873049319781;GATA4:0.863945468341;POU3F1..4:0.853452521589;HMX1:0.828387304708;NFE2L2:0.802454929731;PAX8:0.788863614789;MYFfamily:0.758230829842;EBF1:0.756011010045;TFCP2:0.754574585716;ZIC1..3:0.750937715795;NR3C1:0.701214876745;TBX4,5:0.673951253564;NFIX:0.656053136259;FOXM1:0.602494027514;T:0.599611061512;TEF:0.599346348759;MYBL2:0.583066393251;NFE2L1:0.569656645436;ESRRA:0.563915312788;ZNF384:0.562934503524;TOPORS:0.560969244145;ATF6:0.492312073208;EVI1:0.489772590566;TEAD1:0.479030856967;YY1:0.456065060834;HAND1,2:0.430456047553;NANOG{mouse}:0.427323446938;TP53:0.416550825395;PRDM1:0.409912236998;FOX{I1,J2}:0.406932720521;IKZF1:0.344750327733;ARID5B:0.332296390087;BACH2:0.331570892519;MYB:0.328952880263;IRF1,2:0.320667044446;TBP:0.315647876921;NFATC1..3:0.302222737114;NR1H4:0.294004361891;HLF:0.280335499349;MZF1:0.276555958767;HOXA9_MEIS1:0.270982396162;ONECUT1,2:0.270861935075;GCM1,2:0.269883711384;FOS_FOS{B,L1}_JUN{B,D}:0.269866153879;PAX4:0.265296404455;GTF2I:0.253593414741;MAFB:0.248902408818;FOXQ1:0.230200159187;ESR1:0.223291823005;SRF:0.222548971339;bHLH_family:0.196068178641;HOX{A4,D4}:0.187650925941;RXRA_VDR{dimer}:0.156595590059;HMGA1,2:0.146511894719;HBP1_HMGB_SSRP1_UBTF:0.141323308836;PAX3,7:0.131588698475;CDC5L:0.12871404041;HOX{A6,A7,B6,B7}:0.113284707325;GFI1B:0.085489653678;PBX1:0.0841300784535;FOXL1:0.0724805710733;MTF1:0.0718169141794;TLX2:0.0577702423438;E2F1..5:0.0566523445592;LMO2:0.0558894669898;GTF2A1,2:0.0541713922751;PATZ1:0.0198762752637;ADNP_IRX_SIX_ZHX:0.0196480923199;TFDP1:0.012410963729;POU6F1:0.0110595661952;REST:0.00197252686869;PAX5:-0.000287317472401;NHLH1,2:-0.00728305910523;ZNF148:-0.00953393137328;NFIL3:-0.0113948107094;HNF1A:-0.0210283885579;CDX1,2,4:-0.0330500244911;SOX17:-0.0412247287336;FOSL2:-0.0535321257452;IRF7:-0.0571284275939;RFX1:-0.0608409683287;RUNX1..3:-0.0611452312912;ZBTB16:-0.0693067895511;FOXO1,3,4:-0.0737918535012;NKX3-2:-0.0858009477008;LEF1_TCF7_TCF7L1,2:-0.103741961306;NKX6-1,2:-0.116572850068;POU5F1:-0.119841194829;GFI1:-0.120536090366;MTE{core}:-0.12744618086;PRRX1,2:-0.134168706729;LHX3,4:-0.138228995503;RREB1:-0.138817475646;FOXD3:-0.139486134922;TFAP2{A,C}:-0.141204874434;NFKB1_REL_RELA:-0.144190455512;STAT2,4,6:-0.150906580645;HIC1:-0.161868208445;NKX2-1,4:-0.172178426448;BPTF:-0.172808478526;NFE2:-0.185990059853;ELF1,2,4:-0.190203936186;HNF4A_NR2F1,2:-0.227746684308;EGR1..3:-0.229584799197;ZFP161:-0.234698738161;DMAP1_NCOR{1,2}_SMARC:-0.254496757669;AIRE:-0.256350306425;JUN:-0.256429636339;ELK1,4_GABP{A,B1}:-0.263502826919;XCPE1{core}:-0.271422015491;AHR_ARNT_ARNT2:-0.27596875528;MED-1{core}:-0.281975774529;CEBPA,B_DDIT3:-0.284963134623;IKZF2:-0.294580035119;SPI1:-0.304234552966;SOX2:-0.308505080273;RFX2..5_RFXANK_RFXAP:-0.31345363874;ETS1,2:-0.328704719971;TFAP2B:-0.329522541558;NR6A1:-0.33356460366;NR5A1,2:-0.354276518143;CRX:-0.366636412431;POU2F1..3:-0.372445079441;DBP:-0.392566895809;ZNF143:-0.420619006326;SOX5:-0.426258935667;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.438191331074;MAZ:-0.455908561724;NRF1:-0.497853959631;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.520887293298;PDX1:-0.523365322632;SPIB:-0.524308031345;NKX2-3_NKX2-5:-0.54581571654;MEF2{A,B,C,D}:-0.622370232553;AR:-0.644294128887;SP1:-0.681673359406;CREB1:-0.694527412424;PAX6:-0.737020965147;PAX2:-0.738018310592;EP300:-0.744519600443;SNAI1..3:-0.751565437902;FOXN1:-0.753643550666;ATF5_CREB3:-0.761348281204;STAT5{A,B}:-0.763519155727;ATF2:-0.773726248321;OCT4_SOX2{dimer}:-0.785081163621;CUX2:-0.793298738071;VSX1,2:-0.810794204973;GATA6:-0.833987725551;TGIF1:-0.847112143232;ZEB1:-0.858576733664;FOXA2:-0.866828359819;RBPJ:-0.86971960047;MYOD1:-0.875846151458;NFY{A,B,C}:-0.879490889231;PITX1..3:-0.88704466379;STAT1,3:-0.890217026463;SOX{8,9,10}:-0.898392089787;SREBF1,2:-0.903938815663;FOXP1:-0.9113549349;RORA:-0.952648537723;POU1F1:-1.01140678192;NANOG:-1.02440353276;FOXP3:-1.04070599407;FOX{D1,D2}:-1.10737575857;ATF4:-1.17174533797;HIF1A:-1.2534977376;BREu{core}:-1.31310888136;FOX{F1,F2,J1}:-1.44681438811
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11357-117H7;search_select_hide=table117:FF:11357-117H7
}}
}}

Latest revision as of 17:54, 4 June 2020

Name:Preadipocyte - visceral, donor2
Species:Human (Homo sapiens)
Library ID:CNhs11982
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueheart
dev stage59 years old adult
sexmale
age59
cell typepreadipocyte
cell lineNA
companyCell Applications
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number2115
catalog numberCA802s-R10a
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005360
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11982 CAGE DRX008417 DRR009289
Accession ID Hg19

Library idBAMCTSS
CNhs11982 DRZ000714 DRZ002099
Accession ID Hg38

Library idBAMCTSS
CNhs11982 DRZ012064 DRZ013449
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005360
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10010.CGTACG sRNA-Seq DRX037161 DRR041527
Accession ID Hg19

Library idBAMCTSS
SRhi10010.CGTACG DRZ007169


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.222
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.182
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.139
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.105
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.712
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.205
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.257
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.177
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.182
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-0.0162
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.00643
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.155
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.182
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.182
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.182
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.737
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.309
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.382
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.319
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11982

Jaspar motifP-value
MA0002.20.731
MA0003.10.369
MA0004.10.15
MA0006.10.293
MA0007.10.611
MA0009.10.414
MA0014.10.756
MA0017.10.779
MA0018.22.99962e-7
MA0019.10.968
MA0024.10.0368
MA0025.10.0124
MA0027.10.365
MA0028.10.174
MA0029.10.856
MA0030.10.0122
MA0031.10.0256
MA0035.20.0196
MA0038.10.00717
MA0039.20.0833
MA0040.10.459
MA0041.10.903
MA0042.10.818
MA0043.13.76556e-7
MA0046.10.231
MA0047.20.963
MA0048.10.72
MA0050.10.631
MA0051.10.264
MA0052.10.0031
MA0055.10.0362
MA0057.10.234
MA0058.10.0574
MA0059.10.804
MA0060.14.80997e-10
MA0061.10.207
MA0062.26.36122e-4
MA0065.20.362
MA0066.10.0744
MA0067.10.00481
MA0068.10.162
MA0069.10.314
MA0070.10.564
MA0071.10.951
MA0072.10.276
MA0073.10.995
MA0074.10.179
MA0076.10.0284
MA0077.10.596
MA0078.10.932
MA0079.20.448
MA0080.21.59238e-4
MA0081.10.0259
MA0083.10.332
MA0084.10.0897
MA0087.10.468
MA0088.10.169
MA0090.10.12
MA0091.10.00747
MA0092.10.486
MA0093.10.15
MA0099.20.0029
MA0100.10.476
MA0101.10.452
MA0102.20.217
MA0103.10.153
MA0104.20.289
MA0105.10.00162
MA0106.10.0194
MA0107.10.585
MA0108.20.47
MA0111.10.476
MA0112.20.0011
MA0113.10.412
MA0114.10.867
MA0115.10.653
MA0116.10.00233
MA0117.10.238
MA0119.10.0499
MA0122.10.392
MA0124.10.436
MA0125.10.175
MA0131.10.237
MA0135.10.233
MA0136.12.1831e-4
MA0137.20.424
MA0138.20.701
MA0139.10.369
MA0140.10.188
MA0141.10.427
MA0142.10.103
MA0143.10.772
MA0144.10.411
MA0145.10.312
MA0146.10.357
MA0147.10.639
MA0148.10.588
MA0149.10.791
MA0150.10.425
MA0152.10.0525
MA0153.10.135
MA0154.10.0391
MA0155.10.502
MA0156.12.54676e-4
MA0157.10.0961
MA0159.10.522
MA0160.10.571
MA0162.10.135
MA0163.13.05529e-7
MA0164.10.811
MA0258.10.105
MA0259.10.457



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11982

Novel motifP-value
10.236
100.0968
1000.889
1010.738
1020.788
1030.059
1040.958
1050.491
1060.0168
1070.0136
1080.314
1090.151
110.157
1100.127
1110.526
1120.0826
1130.355
1140.159
1150.0172
1160.0455
1170.239
1180.939
1190.703
120.239
1200.0229
1210.601
1220.0271
1230.303
1240.328
1250.177
1260.813
1270.307
1280.0978
1290.807
130.92
1300.909
1310.642
1320.862
1330.437
1340.723
1350.588
1360.824
1370.587
1380.537
1390.662
140.422
1400.31
1410.807
1420.372
1430.0242
1440.63
1450.57
1460.845
1470.269
1480.00515
1490.0146
150.547
1500.207
1510.539
1520.0728
1530.968
1540.884
1550.204
1560.479
1570.834
1580.0654
1590.472
160.0368
1600.198
1610.585
1620.53
1630.782
1640.422
1650.465
1660.193
1670.327
1680.522
1690.0124
170.39
180.081
190.0222
20.141
200.0801
210.0709
220.272
230.105
240.505
250.479
260.0637
270.109
280.412
290.0929
30.164
300.412
310.774
321.15539e-5
330.774
340.513
350.173
360.0804
370.105
380.713
390.148
40.848
400.256
410.876
420.562
430.16
440.113
450.802
460.0387
470.16
480.286
490.602
50.844
500.712
510.324
520.754
530.694
540.562
550.12
560.472
570.475
580.92
590.0128
60.716
600.405
610.589
620.31
630.332
640.488
650.165
660.506
670.261
680.306
690.777
70.808
700.405
710.0243
720.836
730.085
740.0071
750.307
760.895
770.0411
780.58
790.0122
80.0204
800.699
810.319
820.353
830.332
840.36
850.314
860.303
870.128
880.752
890.0257
90.12
900.261
910.0539
920.2
930.622
940.287
950.0908
960.197
970.534
980.774
990.00623



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11982


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002334 (preadipocyte)
0002582 (visceral preadipocyte)

UBERON: Anatomy
0002384 (connective tissue)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000137 (human preadipocyte sample)
0000143 (human visceral preadipocyte sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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