FF:12177-128I8: Difference between revisions

Latest revision as of 18:33, 4 June 2020

Name:	Whole blood (ribopure), donor090325, donation2
Species:	Human (Homo sapiens)
Library ID:	CNhs11076
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	blood
dev stage	NA
sex	male
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	NA
collaboration	Matched_genome_OSC(contact:Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-ribopure_minelute_cleanup-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005762

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11076		CAGE		DRX008533		DRR009405

Accession ID Hg19

Library id		BAM		CTSS
CNhs11076		DRZ000830		DRZ002215

Accession ID Hg38

Library id		BAM		CTSS
CNhs11076		DRZ012180		DRZ013565

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0976
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0.15
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.287
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.15
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0.15
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0.803
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0.15
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.138
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.485
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.369
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0.589
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.527
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.261
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0.15
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0.261
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.203
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0.652
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.231
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0.261
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.258
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	1.078
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.15
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.485
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.169
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0.54
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.0568
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.15
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.506
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.24
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.695
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0.0614
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.709
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0.15
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0.422
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.903
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0.15
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0.54
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11076

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	8.32238e-11
MA0003.1	MA0003.1	0.0764
MA0004.1	MA0004.1	0.663
MA0006.1	MA0006.1	0.608
MA0007.1	MA0007.1	0.878
MA0009.1	MA0009.1	0.0588
MA0014.1	MA0014.1	0.885
MA0017.1	MA0017.1	0.0743
MA0018.2	MA0018.2	0.0595
MA0019.1	MA0019.1	0.682
MA0024.1	MA0024.1	0.0151
MA0025.1	MA0025.1	0.7
MA0027.1	MA0027.1	0.449
MA0028.1	MA0028.1	0.414
MA0029.1	MA0029.1	0.952
MA0030.1	MA0030.1	0.0346
MA0031.1	MA0031.1	0.00164
MA0035.2	MA0035.2	0.0096
MA0038.1	MA0038.1	0.029
MA0039.2	MA0039.2	0.192
MA0040.1	MA0040.1	0.365
MA0041.1	MA0041.1	0.759
MA0042.1	MA0042.1	0.721
MA0043.1	MA0043.1	0.725
MA0046.1	MA0046.1	0.197
MA0047.2	MA0047.2	0.224
MA0048.1	MA0048.1	0.204
MA0050.1	MA0050.1	2.41576e-7
MA0051.1	MA0051.1	0.00622
MA0052.1	MA0052.1	0.00791
MA0055.1	MA0055.1	0.0576
MA0057.1	MA0057.1	0.932
MA0058.1	MA0058.1	0.711
MA0059.1	MA0059.1	0.765
MA0060.1	MA0060.1	3.25421e-5
MA0061.1	MA0061.1	0.0385
MA0062.2	MA0062.2	1.65965e-5
MA0065.2	MA0065.2	0.0543
MA0066.1	MA0066.1	0.277
MA0067.1	MA0067.1	0.811
MA0068.1	MA0068.1	0.499
MA0069.1	MA0069.1	0.724
MA0070.1	MA0070.1	0.0226
MA0071.1	MA0071.1	0.684
MA0072.1	MA0072.1	0.561
MA0073.1	MA0073.1	0.531
MA0074.1	MA0074.1	0.488
MA0076.1	MA0076.1	0.0985
MA0077.1	MA0077.1	0.129
MA0078.1	MA0078.1	0.886
MA0079.2	MA0079.2	0.776
MA0080.2	MA0080.2	1.17098e-17
MA0081.1	MA0081.1	0.00137
MA0083.1	MA0083.1	0.482
MA0084.1	MA0084.1	0.519
MA0087.1	MA0087.1	0.945
MA0088.1	MA0088.1	0.298
MA0090.1	MA0090.1	0.0126
MA0091.1	MA0091.1	0.286
MA0092.1	MA0092.1	0.919
MA0093.1	MA0093.1	0.577
MA0099.2	MA0099.2	0.423
MA0100.1	MA0100.1	0.951
MA0101.1	MA0101.1	0.811
MA0102.2	MA0102.2	3.7724e-5
MA0103.1	MA0103.1	0.156
MA0104.2	MA0104.2	0.71
MA0105.1	MA0105.1	7.42227e-5
MA0106.1	MA0106.1	0.459
MA0107.1	MA0107.1	0.793
MA0108.2	MA0108.2	1.72271e-6
MA0111.1	MA0111.1	0.222
MA0112.2	MA0112.2	7.871e-4
MA0113.1	MA0113.1	0.88
MA0114.1	MA0114.1	0.375
MA0115.1	MA0115.1	0.539
MA0116.1	MA0116.1	9.13254e-6
MA0117.1	MA0117.1	0.925
MA0119.1	MA0119.1	0.409
MA0122.1	MA0122.1	0.279
MA0124.1	MA0124.1	0.608
MA0125.1	MA0125.1	0.0939
MA0131.1	MA0131.1	0.68
MA0135.1	MA0135.1	0.724
MA0136.1	MA0136.1	3.77253e-25
MA0137.2	MA0137.2	0.101
MA0138.2	MA0138.2	0.599
MA0139.1	MA0139.1	0.174
MA0140.1	MA0140.1	2.64569e-8
MA0141.1	MA0141.1	0.71
MA0142.1	MA0142.1	0.825
MA0143.1	MA0143.1	0.998
MA0144.1	MA0144.1	0.128
MA0145.1	MA0145.1	0.18
MA0146.1	MA0146.1	0.00819
MA0147.1	MA0147.1	0.687
MA0148.1	MA0148.1	0.781
MA0149.1	MA0149.1	0.38
MA0150.1	MA0150.1	0.0291
MA0152.1	MA0152.1	0.111
MA0153.1	MA0153.1	0.0367
MA0154.1	MA0154.1	0.00392
MA0155.1	MA0155.1	0.892
MA0156.1	MA0156.1	2.56221e-19
MA0157.1	MA0157.1	0.00555
MA0159.1	MA0159.1	0.095
MA0160.1	MA0160.1	0.535
MA0162.1	MA0162.1	0.462
MA0163.1	MA0163.1	1.11557e-6
MA0164.1	MA0164.1	0.544
MA0258.1	MA0258.1	0.0133
MA0259.1	MA0259.1	0.349

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11076

Novel motif	Logo	P-value
1	1	0.135
10	10	0.0567
100	100	0.73
101	101	0.217
102	102	0.989
103	103	0.173
104	104	0.736
105	105	0.15
106	106	0.0437
107	107	0.586
108	108	0.745
109	109	0.106
11	11	0.0997
110	110	0.369
111	111	0.153
112	112	0.143
113	113	0.149
114	114	0.0623
115	115	0.457
116	116	0.8
117	117	0.0346
118	118	0.378
119	119	0.289
12	12	0.527
120	120	0.812
121	121	0.875
122	122	0.422
123	123	0.0402
124	124	0.0856
125	125	0.164
126	126	0.344
127	127	0.421
128	128	0.0654
129	129	0.649
13	13	0.612
130	130	0.601
131	131	0.901
132	132	0.401
133	133	0.541
134	134	0.957
135	135	0.258
136	136	0.99
137	137	0.0227
138	138	0.0459
139	139	0.0294
14	14	0.192
140	140	0.259
141	141	0.428
142	142	0.501
143	143	0.00893
144	144	0.764
145	145	0.188
146	146	0.763
147	147	0.143
148	148	0.131
149	149	0.31
15	15	0.0577
150	150	0.913
151	151	0.229
152	152	0.488
153	153	0.569
154	154	0.935
155	155	0.27
156	156	0.654
157	157	0.233
158	158	0.249
159	159	0.226
16	16	0.455
160	160	0.499
161	161	0.311
162	162	0.529
163	163	0.312
164	164	0.315
165	165	0.0803
166	166	0.847
167	167	0.819
168	168	0.112
169	169	0.0152
17	17	0.5
18	18	0.414
19	19	0.393
2	2	0.311
20	20	0.628
21	21	0.472
22	22	0.269
23	23	0.154
24	24	0.109
25	25	0.186
26	26	0.237
27	27	0.0889
28	28	0.499
29	29	0.416
3	3	0.0548
30	30	0.821
31	31	0.592
32	32	0.662
33	33	0.72
34	34	0.295
35	35	0.178
36	36	0.258
37	37	0.203
38	38	0.348
39	39	0.901
4	4	0.656
40	40	0.349
41	41	0.129
42	42	0.185
43	43	0.146
44	44	0.459
45	45	0.603
46	46	0.124
47	47	0.143
48	48	0.235
49	49	0.123
5	5	0.229
50	50	0.978
51	51	0.393
52	52	0.575
53	53	0.0957
54	54	0.36
55	55	0.0453
56	56	0.269
57	57	0.637
58	58	0.0534
59	59	0.0794
6	6	0.635
60	60	0.0878
61	61	0.221
62	62	0.0201
63	63	0.488
64	64	0.368
65	65	0.22
66	66	0.424
67	67	0.288
68	68	0.662
69	69	0.469
7	7	0.134
70	70	0.0515
71	71	0.093
72	72	0.186
73	73	0.352
74	74	0.555
75	75	0.102
76	76	0.351
77	77	0.674
78	78	0.294
79	79	0.996
8	8	0.377
80	80	0.00935
81	81	0.23
82	82	0.0267
83	83	0.614
84	84	0.291
85	85	0.151
86	86	0.191
87	87	0.658
88	88	0.616
89	89	0.374
9	9	0.279
90	90	0.0273
91	91	0.292
92	92	0.0946
93	93	0.359
94	94	0.102
95	95	0.338
96	96	0.131
97	97	0.714
98	98	0.0692
99	99	0.532

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11076

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000002 in vivo cell sample
FF:0000281 human whole blood sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000178 (blood)
0000479 (tissue)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000179 (haemolymphatic fluid)
0000463 (organism substance)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010317 (germ layer / neural crest derived structure)
0002390 (hematopoietic system)
0004535 (cardiovascular system)
0002193 (hemolymphoid system)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0010053 (human blood - adult sample)
0000004 (tissue sample)
0000281 (human whole blood sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
NA

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS008425
+|DRA_sample_Accession=CAGE@SAMD00005762
-|accession_numbers=CAGE;DRX008533;DRR009405;DRZ000830;DRZ002215
+|accession_numbers=CAGE;DRX008533;DRR009405;DRZ000830;DRZ002215;DRZ012180;DRZ013565
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000178,UBERON:0000479,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000179,UBERON:0000463,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0002390,UBERON:0004535,UBERON:0002193,UBERON:0001009
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chrX:131623044..131623089,-!p1@MBNL3!2.62!1631.46!MBNL3;;chr11:47400078..47400106,-!p1@SPI1!2.61!409.31!SPI1;;chr2:68592406..68592424,+!p1@PLEK!2.38!240.65!PLEK;;chr12:54694653..54694672,-!p2@NFE2!2.36!229.54!NFE2;;chr12:54694758..54694805,-!p1@NFE2!2.22!197.45!NFE2;;chrX:131622958..131622978,-!p3@MBNL3!2.13!166.60!MBNL3;;chrX:131622988..131623006,-!p8@MBNL3!2.12!131.22!MBNL3;;chrX:131623026..131623039,-!p5@MBNL3!2.05!111.89!MBNL3;;chr12:54694807..54694832,-!p3@NFE2!1.95!87.62!NFE2;;chrX:70315688..70315709,+!p1@FOXO4!1.91!181.41!FOXO4;;chr2:70142232..70142251,+!p1@MXD1!1.86!378.04!MXD1;;chr16:85932760..85932775,+!p1@IRF8!1.86!71.17!IRF8;;chr7:28220354..28220441,-!p1@JAZF1!1.79!880.73!JAZF1;;chr2:100759010..100759035,-!p1@AFF3!1.78!59.24!AFF3;;chr7:28220506..28220552,-!p3@JAZF1!1.74!54.30!JAZF1;;chr10:51572408..51572454,+!p3@NCOA4!1.73!293.30!NCOA4;;chr7:50344289..50344323,+!p1@IKZF1!1.68!46.48!IKZF1;;chr5:133451294..133451310,+!p2@TCF7!1.65!44.02!TCF7;;chr17:45810594..45810608,+!p1@TBX21!1.65!44.02!TBX21;;chr2:231090433..231090469,+!p1@SP140!1.64!42.37!SP140;;chr7:50343634..50343717,+!p2@IKZF1!1.62!41.14!IKZF1;;chr3:128212033..128212051,-!p1@GATA2!1.62!40.31!GATA2;;chr19:50922187..50922204,+!p1@SPIB!1.60!38.67!SPIB;;chr10:51572339..51572376,+!p4@NCOA4!1.57!80.22!NCOA4;;chr12:54778471..54778528,-!p1@ZNF385A!1.56!35.38!ZNF385A;;chr10:51585449..51585487,+!p6@NCOA4!1.55!34.55!NCOA4;;chr9:117150254..117150271,-!p1@AKNA!1.54!89.27!AKNA;;chr2:148778973..148779035,+!p3@MBD5!1.52!80.63!MBD5;;chr11:47400062..47400077,-!p2@SPI1!1.52!32.09!SPI1;;chr4:109087445..109087463,-!p1@LEF1!1.51!31.67!LEF1;;chr19:13213511..13213545,-!p2@LYL1!1.50!32.91!LYL1;;chr2:192015701..192015743,-!p1@STAT4!1.49!40.31!STAT4;;chr3:27763807..27763822,-!p1@EOMES!1.49!30.03!EOMES;;chr6:391743..391759,+!p1@IRF4!1.49!30.03!IRF4;;chr20:56195474..56195506,-!p1@ZBP1!1.49!30.03!ZBP1;;chr2:68592394..68592405,+!p2@PLEK!1.47!28.38!PLEK;;chr2:100759037..100759058,-!p2@AFF3!1.46!27.56!AFF3;;chr3:63953435..63953499,+!p1@ATXN7!1.46!27.56!ATXN7;;chr11:111249993..111250006,-!p1@POU2AF1!1.46!27.56!POU2AF1;;chr2:231090471..231090504,+!p2@SP140!1.43!25.92!SP140;;chr1:25256756..25256774,-!p1@RUNX3!1.42!47.31!RUNX3;;chr7:28725715..28725727,+!p3@CREB5!1.41!29.21!CREB5;;chr19:16435625..16435682,+!p1@KLF2!1.40!740.45!KLF2;;chr5:133450365..133450444,+!p1@TCF7!1.40!106.54!TCF7;;chr3:187463179..187463201,-!p2@BCL6!1.40!96.67!BCL6;;chrY:21906594..21906622,-!p1@KDM5D!1.40!23.86!KDM5D;;chr2:192015750..192015793,-!p2@STAT4!1.38!30.85!STAT4;;chr3:141748010..141748030,-!p8@TFDP2!1.38!23.04!TFDP2;;chr11:47399947..47399961,-!p3@SPI1!1.38!23.04!SPI1;;chr11:47399996..47400014,-!p4@SPI1!1.37!22.62!SPI1;;chr11:47400032..47400043,-!p5@SPI1!1.37!22.21!SPI1;;chr3:71355163..71355209,-!p5@FOXP1!1.35!29.62!FOXP1;;chr6:91006518..91006570,-!p1@BACH2!1.34!46.90!BACH2;;chr5:88178983..88179012,-!p1@MEF2C!1.33!152.20!MEF2C;;chr17:37934365..37934387,-!p2@IKZF3!1.33!20.57!IKZF3;;chr17:38020392..38020477,-!p1@IKZF3!1.33!20.16!IKZF3;;chr7:50344251..50344288,+!p3@IKZF1!1.32!19.75!IKZF1;;chr10:111985713..111985774,+!p2@MXI1!1.30!176.47!MXI1;;chr6:144385698..144385742,-!p2@PLAGL1!1.30!23.04!PLAGL1;;chr13:41593425..41593480,-!p1@ELF1!1.29!113.95!ELF1;;chr17:38497662..38497713,+!p4@RARA!1.27!20.57!RARA;;chr10:51585430..51585448,+!p7@NCOA4!1.27!17.69!NCOA4;;chr11:47400045..47400060,-!p6@SPI1!1.26!17.28!SPI1;;chr4:185395633..185395651,-!p2@IRF2!1.24!26.33!IRF2;;chr7:28725740..28725778,+!p1@CREB5!1.23!139.86!CREB5;;chr20:50159198..50159299,-!p1@NFATC2!1.23!23.04!NFATC2;;chr19:12998003..12998021,-!p1@KLF1!1.23!16.04!KLF1;;chr5:176735063..176735088,-!p2@MXD3!1.23!16.04!MXD3;;chr11:128563948..128564003,+!p1@FLI1!1.22!186.35!FLI1;;chr21:34442439..34442455,+!p1@OLIG1!1.22!15.63!OLIG1;;chr17:17721569..17721574,-!p9@SREBF1!1.22!15.63!SREBF1;;chr10:111967345..111967422,+!p1@MXI1!1.21!240.65!MXI1;;chr6:106546808..106546833,+!p3@PRDM1!1.20!18.51!PRDM1;;chr9:135854091..135854159,+!p1@GFI1B!1.20!14.81!GFI1B;;chr3:18486354..18486377,-!p2@SATB1!1.19!18.10!SATB1;;chr7:115670804..115670825,-!p1@TFEC!1.18!13.99!TFEC;;chr7:50343895..50343936,+!p5@IKZF1!1.18!13.99!IKZF1;;chr2:28618532..28618610,+!p4@FOSL2!1.17!23.45!FOSL2;;chr1:23857325..23857416,-!p2@E2F2!1.17!16.04!E2F2;;chr19:13213662..13213686,-!p1@LYL1!1.16!19.75!LYL1;;chr2:100758991..100759009,-!p3@AFF3!1.16!13.57!AFF3;;chr2:145277640..145277771,-!p1@ZEB2!1.14!169.07!ZEB2;;chr16:3313791..3313834,+!p2@ZNF263!1.14!28.38!ZNF263;;chr12:53835425..53835437,+!p4@PRR13,p5@PCBP2!1.14!20.98!PCBP2;;chr1:43148855..43148908,+!p4@YBX1!1.14!20.16!YBX1;;chr17:38020557..38020572,-!p4@IKZF3!1.14!12.75!IKZF3;;chr5:131826457..131826514,-!p1@IRF1!1.12!476.77!IRF1;;chr15:60884706..60884743,-!p1@RORA!1.12!62.53!RORA;;chrX:106960285..106960299,-!p1@TSC22D3!1.11!319.63!TSC22D3;;chr5:133451347..133451358,+!p3@TCF7!1.11!11.93!TCF7;;chr14:75988771..75988826,+!p1@BATF!1.10!15.63!BATF;;chrX:131574281..131574293,-!p18@MBNL3!1.10!11.52!MBNL3;;chr12:54689532..54689551,-!p4@NFE2!1.10!11.52!NFE2;;chr12:54689552..54689574,-!p6@NFE2!1.10!11.52!NFE2;;chr7:149470641..149470694,-!p1@ZNF467!1.08!50.60!ZNF467;;chr21:36421535..36421610,-!p2@RUNX1!1.08!39.49!RUNX1;;chr2:208031943..208031978,-!p5@KLF7!1.08!14.81!KLF7;;chr2:70167296..70167306,+!p3@MXD1!1.07!16.45!MXD1;;chr1:26697243..26697258,-!p1@ZNF683!1.07!10.70!ZNF683;;chr10:51565239..51565263,+!p2@NCOA4!1.06!248.05!NCOA4;;chr2:231084659..231084721,-!p1@SP110!1.06!245.99!SP110;;chr16:89787937..89787971,+!p1@ZNF276!1.06!27.56!ZNF276;;chr5:142782823..142782854,-!p3@NR3C1!1.06!15.22!NR3C1;;chr4:185395590..185395627,-!p3@IRF2!1.06!13.16!IRF2;;chr10:8096772..8096787,+!p2@GATA3!1.06!12.34!GATA3;;chr4:106068026..106068084,+!p1@TET2!1.05!92.15!TET2;;chr4:185395191..185395226,-!p4@IRF2!1.05!14.40!IRF2;;chr16:88752889..88752921,-!p1@SNAI3!1.05!11.93!SNAI3;;chr20:56195525..56195556,-!p2@ZBP1!1.05!10.28!ZBP1;;chr3:18480217..18480239,-!p3@SATB1!1.05!10.28!SATB1;;chr1:8484007..8484061,-!p13@RERE!1.04!12.75!RERE;;chr3:71542615..71542644,-!p12@FOXP1!1.04!9.87!FOXP1;;chr12:54694738..54694749,-!p5@NFE2!1.04!9.87!NFE2;;chrX:106960180..106960197,-!p2@TSC22D3!1.02!36.61!TSC22D3;;chr12:54691711..54691725,-!p7@NFE2!1.02!9.46!NFE2;;chr4:109089901..109089930,-!p3@LEF1!1.02!9.46!LEF1;;chr1:47697965..47697991,-!p7@TAL1!1.02!9.46!TAL1;;chr11:128392273..128392308,-!p2@ETS1!1.01!39.90!ETS1;;chr17:38498594..38498661,+!p2@RARA!1.01!31.67!RARA;;chr3:32023232..32023273,+!p1@ZNF860!1.01!13.16!ZNF860;;chr10:8096631..8096660,+!p1@GATA3!1.01!11.11!GATA3;;chr14:64970670..64970712,-!p3@ZBTB25!1.00!19.75!ZBTB25;;chr3:18487057..18487105,-!p4@SATB1!1.00!9.05!SATB1;;chr1:47695003..47695042,-!p2@TAL1!1.00!9.05!TAL1;;chr4:57522598..57522664,-!p3@HOPX!0.98!8.64!HOPX;;chr2:208031542..208031595,-!p2@KLF7!0.97!60.06!KLF7;;chr19:42636586..42636607,-!p1@POU2F2!0.97!23.45!POU2F2;;chrY:2803415..2803468,+!p1@ZFY!0.97!8.23!ZFY;;chrX:48644984..48645005,+!p1@GATA1!0.97!8.23!GATA1;;chr5:158526756..158526797,-!p3@EBF1!0.97!8.23!EBF1;;chr3:71542684..71542720,-!p18@FOXP1!0.97!8.23!FOXP1;;chr9:137217986..137218049,+!p3@RXRA!0.96!23.86!RXRA;;chr10:31288398..31288455,-!p2@ZNF438!0.96!9.46!ZNF438;;chr2:70142189..70142223,+!p2@MXD1!0.95!58.00!MXD1;;chr2:60780607..60780624,-!p2@BCL11A!0.95!25.09!BCL11A;;chr19:13213954..13214021,-!p4@LYL1!0.95!7.82!LYL1;;chr5:88179017..88179046,-!p2@MEF2C!0.94!32.09!MEF2C;;chr17:38498402..38498445,+!p3@RARA!0.94!28.38!RARA;;chr12:10875831..10876025,-!p1@CSDA!0.93!646.66!CSDA;;chr9:32550965..32551031,-!p4@TOPORS!0.92!11.52!TOPORS;;chr7:149470540..149470596,-!p2@ZNF467!0.92!9.87!ZNF467;;chr4:109090075..109090095,-!p2@LEF1!0.92!7.40!LEF1;;chr6:91006575..91006602,-!p2@BACH2!0.91!10.70!BACH2;;chr19:13213704..13213726,-!p3@LYL1!0.91!9.46!LYL1;;chr19:56146352..56146420,+!p2@ZNF580,p2@ZNF581!0.90!47.31!ZNF580;;chr14:69262947..69262986,-!p3@ZFP36L1!0.90!8.64!ZFP36L1;;chr6:106546731..106546755,+!p5@PRDM1!0.90!6.99!PRDM1;;chr2:231090344..231090361,-!p3@SP110!0.90!6.99!SP110;;chr3:71179699..71179744,-!p2@FOXP1!0.88!51.42!FOXP1;;chr3:71542651..71542683,-!p22@FOXP1!0.88!6.58!FOXP1;;chr1:26697189..26697205,-!p2@ZNF683!0.88!6.58!ZNF683;;chr1:47697881..47697910,-!p4@TAL1!0.88!6.58!TAL1;;chr7:137620650..137620677,-!p3@CREB3L2!0.88!6.58!CREB3L2;;chr7:50348268..50348366,+!p4@IKZF1!0.88!6.58!IKZF1;;chr9:37034186..37034216,-!p2@PAX5!0.88!6.58!PAX5;;chr21:30671211..30671234,+!p3@BACH1!0.87!32.91!BACH1;;chr6:15246200..15246214,+!p2@JARID2!0.87!18.51!JARID2;;chr19:38085768..38085821,+!p1@ZNF540!0.87!9.87!ZNF540;;chr4:81118647..81118666,+!p1@PRDM8!0.87!8.64!PRDM8;;chr4:38665769..38665801,+!p2@KLF3!0.86!59.65!KLF3;;chr16:68119324..68119364,+!p1@NFATC3!0.86!29.62!NFATC3;;chrX:106960221..106960236,-!p3@TSC22D3!0.86!18.10!TSC22D3;;chr9:94173455..94173468,-!p4@NFIL3!0.86!6.17!NFIL3;;chr12:54694686..54694697,-!p8@NFE2!0.86!6.17!NFE2;;chr12:6782377..6782382,-!p15@ZNF384!0.86!6.17!ZNF384;;chr17:37934204..37934241,-!p3@IKZF3!0.86!6.17!IKZF3;;chr17:56565257..56565283,-!p2@HSF5!0.86!6.17!HSF5;;chr8:71316021..71316068,-!p1@NCOA2!0.85!60.88!NCOA2;;chrX:101186981..101187030,-!p1@ZMAT1!0.85!20.98!ZMAT1;;chr1:23857698..23857733,-!p1@E2F2!0.85!11.52!E2F2;;chr17:40440481..40440550,+!p1@STAT5A!0.84!45.25!STAT5A;;chr6:108880956..108881011,+!p1@FOXO3!0.83!40.31!FOXO3;;chr9:117160738..117160782,-!p2@AKNA!0.83!25.09!AKNA;;chr2:231084639..231084654,-!p2@SP110!0.83!9.87!SP110;;chr7:128577972..128578047,+!p1@IRF5!0.83!9.46!IRF5;;chr6:135516877..135516900,+!p5@MYB!0.83!5.76!MYB;;chr7:137620684..137620711,-!p4@CREB3L2!0.83!5.76!CREB3L2;;chr17:37934280..37934299,-!p6@IKZF3!0.83!5.76!IKZF3;;chr19:13213634..13213645,-!p8@LYL1!0.83!5.76!LYL1;;chr19:20748574..20748599,-!p1@ZNF737!0.82!36.20!ZNF737;;chr19:12405606..12405629,-!p2@ZNF44!0.81!11.11!ZNF44;;chr13:74707894..74707947,-!p6@KLF12!0.81!6.17!KLF12;;chr2:208394817..208394834,+!p3@CREB1!0.80!23.04!CREB1;;chr1:43148792..43148849,+!p2@YBX1!0.80!21.39!YBX1;;chr3:187463220..187463232,-!p3@BCL6!0.80!16.87!BCL6;;chr18:32957260..32957309,-!p1@ZNF396!0.80!12.34!ZNF396;;chr9:11715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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000178;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 39: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Whole%2520blood%2520%2528ribopure%2529%252c%2520donor090325%252c%2520donation2.CNhs11076.12177-128I8.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Whole%2520blood%2520%2528ribopure%2529%252c%2520donor090325%252c%2520donation2.CNhs11076.12177-128I8.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Whole%2520blood%2520%2528ribopure%2529%252c%2520donor090325%252c%2520donation2.CNhs11076.12177-128I8.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Whole%2520blood%2520%2528ribopure%2529%252c%2520donor090325%252c%2520donation2.CNhs11076.12177-128I8.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Whole%2520blood%2520%2528ribopure%2529%252c%2520donor090325%252c%2520donation2.CNhs11076.12177-128I8.hg38.nobarcode.ctss.bed.gz
 |id=FF:12177-128I8
 |is_a=EFO:0002091;;FF:0000002;;FF:0000281
 |is_obsolete=
 |library_id=CNhs11076
-|library_ids=CNhs11076
+|library_id_phase_based=2:CNhs11076
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;12177
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;12177
 |name=Whole blood (ribopure), donor090325, donation2
 |namespace=FANTOM5
@@ Line 49: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11076,LSID723,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 }}

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FF:12177-128I8: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 18:33, 4 June 2020

	FAQ
	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0