FFCP PHASE1:Hg19::chr7:140227349..140227360,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr7:140227349..140227360,- | |||
|coexpression_cluster_id=C4659 | |||
|description=CAGE_peak_at_chr7:140227349..140227360,- | |||
|id=chr7:140227349..140227360,- | |||
|ontology_enrichment_celltype=CL:1000507!9.22e-21!12;CL:1000494!9.22e-21!12;CL:1000497!1.44e-19!18;CL:0002518!1.44e-19!18;CL:1000449!4.42e-15!16;CL:0002681!1.83e-11!13;CL:0002584!1.83e-11!13;CL:0000239!7.98e-11!3;CL:1000615!7.98e-11!3;CL:0002306!7.98e-11!3 | |||
|ontology_enrichment_celltype_v019=CL:1000507;6.06e-74;10!CL:1000494;6.06e-74;10!CL:1000449;2.96e-49;15!CL:0000239;2.24e-46;3!CL:1000615;2.24e-46;3!CL:0002306;2.24e-46;3!CL:1000497;1.93e-43;17!CL:0002518;1.93e-43;17!CL:0002681;6.66e-32;12!CL:0002584;6.66e-32;12!CL:0002601;1.53e-16;1!CL:0000650;4.01e-09;2!CL:1000500;4.01e-09;2!CL:1000618;4.01e-09;2!CL:1001318;4.01e-09;2!CL:0002173;4.01e-09;2!CL:0002363;6.17e-09;2 | |||
|ontology_enrichment_celltype_v019_2=CL:1000507,2.70e-74,10;CL:1000494,2.70e-74,10;CL:1000449,1.73e-49,15;CL:0000239,1.65e-46,3;CL:1000615,1.65e-46,3;CL:0002306,1.65e-46,3;CL:1000497,1.20e-43,17;CL:0002518,1.20e-43,17;CL:0002681,4.69e-32,12;CL:0002584,4.69e-32,12;CL:0002601,2.63e-16,1;CL:0000650,4.02e-09,2;CL:1000500,4.02e-09,2;CL:1000618,4.02e-09,2;CL:1001318,4.02e-09,2;CL:0002173,4.02e-09,2;CL:0002363,8.74e-09,2;CL:0000008,8.74e-09,2 | |||
|ontology_enrichment_development_v019=CL:0000008;6.17e-09;2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002113!3.29e-23!27;UBERON:0003918!3.29e-23!27;UBERON:0005095!3.29e-23!27;UBERON:0007687!3.29e-23!27;UBERON:0009773!9.22e-21!12;UBERON:0001231!9.22e-21!12;UBERON:0004810!9.22e-21!12;UBERON:0000080!1.16e-19!18;UBERON:0002120!1.16e-19!18;UBERON:0004875!1.16e-19!18;UBERON:0005721!1.16e-19!18;UBERON:0005754!1.16e-19!18;UBERON:0007297!1.16e-19!18;UBERON:0000489!5.86e-19!32;UBERON:0004876!1.98e-17!20;UBERON:0006555!2.54e-17!17;UBERON:0005103!2.54e-17!17;UBERON:0000083!2.54e-17!17;UBERON:0009201!2.54e-17!17;UBERON:0004819!2.54e-17!17;UBERON:0006553!2.54e-17!17;UBERON:0003074!2.54e-17!17;UBERON:0003060!2.54e-17!17;UBERON:0003887!1.79e-16!21;UBERON:0004211!4.42e-15!16;UBERON:0001285!4.42e-15!16;UBERON:0007684!4.42e-15!16;UBERON:0003220!4.42e-15!16;UBERON:0004208!4.42e-15!16;UBERON:0005172!3.27e-14!55;UBERON:0005173!3.27e-14!55;UBERON:0000058!8.36e-13!26;UBERON:0006554!9.95e-13!44;UBERON:0001008!2.32e-12!45;UBERON:0002417!2.36e-12!61;UBERON:0000916!2.36e-12!61;UBERON:0001851!9.32e-12!16;UBERON:0001225!1.83e-11!13;UBERON:0008987!1.83e-11!13;UBERON:0006853!7.98e-11!3;UBERON:0007685!7.98e-11!3;UBERON:0004134!7.98e-11!3;UBERON:0003886!2.64e-10!63;UBERON:0003064!6.80e-10!37;UBERON:0005177!1.49e-09!107;UBERON:0003103!5.09e-09!69;UBERON:0000464!6.83e-09!104;UBERON:0002553!7.37e-09!70;UBERON:0009569!9.54e-09!113;UBERON:0000353!1.73e-08!17;UBERON:0000466!3.07e-07!126 | |||
|ontology_enrichment_uberon_v019=UBERON:0004211;6.06e-74;10!UBERON:0009773;6.06e-74;10!UBERON:0001231;6.06e-74;10!UBERON:0004810;6.06e-74;10!UBERON:0006555;2.96e-49;15!UBERON:0004819;2.96e-49;15!UBERON:0001285;2.96e-49;15!UBERON:0007684;2.96e-49;15!UBERON:0006853;2.24e-46;3!UBERON:0007685;2.24e-46;3!UBERON:0004134;2.24e-46;3!UBERON:0002113;5.98e-40;24!UBERON:0011143;5.98e-40;24!UBERON:0000489;5.45e-33;29!UBERON:0001225;6.66e-32;12!UBERON:0008987;6.66e-32;12!UBERON:0006554;7.09e-32;30!UBERON:0001008;7.09e-32;30!UBERON:0001851;1.46e-25;15!UBERON:0000353;1.46e-25;15!UBERON:0003891;2.34e-16;4!UBERON:0005172;1.00e-13;52!UBERON:0005173;1.00e-13;52!UBERON:0002417;3.81e-09;58!UBERON:0000916;3.81e-09;58!UBERON:0003567;4.01e-09;2!UBERON:0003838;4.01e-09;2!UBERON:0003586;4.01e-09;2!UBERON:0005169;4.01e-09;2!UBERON:0002321;4.01e-09;2!UBERON:0005215;4.01e-09;2!UBERON:0002303;4.01e-09;2!UBERON:0002319;4.01e-09;2!UBERON:0003566;6.17e-09;2!UBERON:0001777;6.17e-09;2!UBERON:0003103;7.88e-08;61!UBERON:0003914;2.03e-07;74 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004810,2.70e-74,10;UBERON:0004211,1.73e-49,15;UBERON:0009773,1.73e-49,15;UBERON:0001231,1.73e-49,15;UBERON:0001285,1.73e-49,15;UBERON:0007684,1.73e-49,15;UBERON:0004208,1.73e-49,15;UBERON:0006853,1.65e-46,3;UBERON:0007685,1.65e-46,3;UBERON:0004134,1.65e-46,3;UBERON:0006555,2.19e-46,16;UBERON:0004819,2.19e-46,16;UBERON:0002113,4.31e-37,26;UBERON:0003918,4.31e-37,26;UBERON:0011143,4.31e-37,26;UBERON:0005095,4.31e-37,26;UBERON:0007687,4.31e-37,26;UBERON:0001225,4.69e-32,12;UBERON:0008987,4.69e-32,12;UBERON:0000489,4.87e-31,31;UBERON:0001851,1.10e-25,15;UBERON:0000353,1.10e-25,15;UBERON:0006554,2.66e-20,47;UBERON:0001008,7.22e-20,48;UBERON:0005172,1.34e-17,54;UBERON:0005173,1.34e-17,54;UBERON:0003891,3.32e-16,4;UBERON:0002417,8.84e-16,60;UBERON:0000916,8.84e-16,60;UBERON:0003103,7.49e-14,68;UBERON:0003567,4.02e-09,2;UBERON:0003838,4.02e-09,2;UBERON:0003586,4.02e-09,2;UBERON:0005169,4.02e-09,2;UBERON:0002321,4.02e-09,2;UBERON:0005215,4.02e-09,2;UBERON:0002303,4.02e-09,2;UBERON:0002319,4.02e-09,2;UBERON:0005177,4.14e-09,101;UBERON:0003566,8.74e-09,2;UBERON:0001777,8.74e-09,2;UBERON:0009569,3.82e-08,112;UBERON:0003914,9.71e-08,117;UBERON:0003104,6.12e-07,160;UBERON:0009142,6.12e-07,160 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0.204000691244253,0,0,0,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.20848795132744,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,0,0,0,0,0,0,0,0,0,0,0,0,1.03993478527958,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063497894292169,0,0,0,0,0,0,0,0,0.2933531432838,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199945982364114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.80479845162965,0.385076685522074,1.56869953835371,1.46139224653261,0,0,0,0,0,0.270946437543853,2.00675909541941,1.27438136522519,1.66215201785745,3.35812132083267,0,0,0,0,0,0,0,0,0,0,0,0,0.154048617114644,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.578775534266688,0,0,0,0,0,0,0,1.06428319221179,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.92495971052672,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.222617410045812,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.31900115973192,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.96301093956496,0,0,0,0.34945333648406,0,0,0,0,0.387956065953678,0,0,0.137041924646751,0,0.126621591911757,0,0.961905843018405,0,0,0,0,0,0,0,0,0.135904206073614,0.104602846312333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.25426853765475,0,0.864221491201268,0,0,0,0.340776043570843,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.235265819698172,0,0,0,0,0,0,0,0,0,0,0,0,0.477890301491107,0,0.155262956876259,0,0,0,0.150257608997218,0,0,0,0.644463342254931,0,0,0,0,0,0,0.385239660814607,0,0,0,0,0,0,0.617602894321944,0,0,0.192914038270915,0.168942440653073,0,0,0.303859956177382,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215649622793364,0,0,0,0,0,0,0,0,0,0,0,0.321146125482298,0,0,0.205116364240755,0,0,0.484426936895553,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135075169236789,0,0,0.126831620387814,0,0,0,0,0,0,0,0,0,0,0,0,0,0.131545547125698,0,0,0,0,0,0,0.215927591218621,0.47775168788705,0,0,0,0,0,0,0,0,0,0,0,0.423387050190929,0.22910686854405,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.754814217833368,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.203974470572744,0,0,0,0,0,0,0,0,0,0,1.19463369395298,0,0.151557396436479,0,0,0,0,0,0,0,0,0.0636471582781649,0.202117188958219,0,0,0,0.143444410785353,0,0,0,0,0,0,0.244482888365733,0,0,0,0 | |||
|short_description=p@chr7:140227349..140227360,- | |||
}} |
Latest revision as of 06:42, 31 July 2015
Short description: | p@chr7:140227349..140227360, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr7:140227349..140227360, - |
Coexpression cluster: | C4659_endometrial_Renal_Wilms_testicular_gall_Smooth_leiomyoma |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
kidney tubule cell | 2.70e-74 | 10 |
nephron tubule epithelial cell | 2.70e-74 | 10 |
epithelial cell of nephron | 1.73e-49 | 15 |
brush border epithelial cell | 1.65e-46 | 3 |
kidney cortex tubule cell | 1.65e-46 | 3 |
epithelial cell of proximal tubule | 1.65e-46 | 3 |
kidney cell | 1.20e-43 | 17 |
kidney epithelial cell | 1.20e-43 | 17 |
kidney cortical cell | 4.69e-32 | 12 |
renal cortical epithelial cell | 4.69e-32 | 12 |
uterine smooth muscle cell | 2.63e-16 | 1 |
mesangial cell | 4.02e-09 | 2 |
kidney interstitial cell | 4.02e-09 | 2 |
juxtaglomerular complex cell | 4.02e-09 | 2 |
renal interstitial pericyte | 4.02e-09 | 2 |
extraglomerular mesangial cell | 4.02e-09 | 2 |
keratocyte | 8.74e-09 | 2 |
migratory cranial neural crest cell | 8.74e-09 | 2 |