FFCP PHASE1:Hg19::chrX:9733914..9733919,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chrX:9733914..9733919,-
|short_description=p4@GPR143
|description=CAGE_peak_4_at_GPR143_5end
|association_with_transcript=0bp_to_uc004cst.1_5end
|EntrezGene=49...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=4935 | |EntrezGene=4935 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20145 | |HGNC=20145 | ||
|TSSclassifier=strong | |||
|UniProt=P51810 | |UniProt=P51810 | ||
|association_with_transcript=0bp_to_uc004cst.1_5end | |||
|cluster_id=chrX:9733914..9733919,- | |||
|coexpression_cluster_id=C58 | |||
|description=CAGE_peak_4_at_GPR143_5end | |||
|id=chrX:9733914..9733919,- | |||
|ontology_enrichment_celltype=CL:0000147!2.22e-24!14;CL:0000148!6.06e-21!10;CL:0000541!6.06e-21!10;CL:0002681!1.48e-12!13;CL:0002584!1.48e-12!13;CL:1000449!7.36e-12!16;CL:0002322!1.89e-11!5;CL:1000507!4.20e-11!12;CL:1000494!4.20e-11!12;CL:1000497!3.01e-10!18;CL:0002518!3.01e-10!18;CL:0000149!3.18e-09!4;CL:0000710!4.19e-09!20;CL:0000075!9.26e-09!27;CL:0002567!1.66e-07!3;CL:0002586!2.76e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0000147;7.00e-78;14!CL:0000148;2.09e-65;10!CL:0002322;7.03e-34;5!CL:0000710;7.31e-32;20!CL:0000075;7.27e-28;27!CL:0000149;1.37e-26;4!CL:0002567;4.80e-21;3!CL:0002586;2.97e-20;3!CL:0002077;3.75e-16;34!CL:0002321;3.57e-11;15!CL:0002681;1.58e-08;12!CL:0002584;1.58e-08;12!CL:0002566;5.33e-08;1!CL:1000449;7.59e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000147,7.94e-78,14;CL:0000148,2.56e-65,10;CL:0000541,2.56e-65,10;CL:0002322,6.15e-34,5;CL:0000710,8.07e-32,20;CL:0000075,7.87e-28,27;CL:0000149,1.28e-26,4;CL:0002567,5.31e-21,3;CL:0002586,2.78e-20,3;CL:0002077,5.35e-18,34;CL:0000333,7.32e-14,41;CL:0000133,2.97e-09,59;CL:0002681,1.42e-08,12;CL:0002584,1.42e-08,12;CL:0002566,5.33e-08,1;CL:0000221,2.52e-07,72;CL:0000066,3.59e-07,253;CL:1000449,7.01e-07,15 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:1909;3.79e-14;2 | |||
|ontology_enrichment_disease_v019_2=DOID:1909,3.01e-14,2 | |||
|ontology_enrichment_uberon=UBERON:0005743!6.10e-37!86;UBERON:0001049!9.02e-35!57;UBERON:0005068!9.02e-35!57;UBERON:0006241!9.02e-35!57;UBERON:0007135!9.02e-35!57;UBERON:0000073!3.94e-32!94;UBERON:0001016!3.94e-32!94;UBERON:0001017!2.46e-31!82;UBERON:0002616!6.60e-31!59;UBERON:0003075!4.44e-30!86;UBERON:0007284!4.44e-30!86;UBERON:0002346!3.67e-28!90;UBERON:0000955!6.70e-28!69;UBERON:0006238!6.70e-28!69;UBERON:0002780!1.86e-26!41;UBERON:0001890!1.86e-26!41;UBERON:0006240!1.86e-26!41;UBERON:0003080!1.22e-25!42;UBERON:0001893!1.04e-23!34;UBERON:0002020!1.06e-23!34;UBERON:0003528!1.06e-23!34;UBERON:0003056!1.97e-23!61;UBERON:0002791!1.35e-22!33;UBERON:0001869!3.94e-21!32;UBERON:0007023!5.60e-19!115;UBERON:0000033!5.33e-18!123;UBERON:0000153!1.37e-16!129;UBERON:0007811!1.37e-16!129;UBERON:0001950!8.02e-16!20;UBERON:0002308!1.25e-15!9;UBERON:0000125!1.25e-15!9;UBERON:0004121!1.94e-15!169;UBERON:0000924!9.14e-15!173;UBERON:0006601!9.14e-15!173;UBERON:0002619!4.27e-14!22;UBERON:0006555!3.98e-13!17;UBERON:0005103!3.98e-13!17;UBERON:0000083!3.98e-13!17;UBERON:0009201!3.98e-13!17;UBERON:0004819!3.98e-13!17;UBERON:0006553!3.98e-13!17;UBERON:0003074!3.98e-13!17;UBERON:0003060!3.98e-13!17;UBERON:0000025!5.67e-13!194;UBERON:0009663!8.45e-13!7;UBERON:0001225!1.48e-12!13;UBERON:0008987!1.48e-12!13;UBERON:0002420!2.21e-12!9;UBERON:0007245!2.21e-12!9;UBERON:0010009!2.21e-12!9;UBERON:0010011!2.21e-12!9;UBERON:0000454!2.21e-12!9;UBERON:0000080!3.14e-12!18;UBERON:0002120!3.14e-12!18;UBERON:0004875!3.14e-12!18;UBERON:0005721!3.14e-12!18;UBERON:0005754!3.14e-12!18;UBERON:0007297!3.14e-12!18;UBERON:0000956!5.16e-12!25;UBERON:0000203!5.16e-12!25;UBERON:0004211!7.36e-12!16;UBERON:0001285!7.36e-12!16;UBERON:0007684!7.36e-12!16;UBERON:0003220!7.36e-12!16;UBERON:0004208!7.36e-12!16;UBERON:0009773!4.20e-11!12;UBERON:0001231!4.20e-11!12;UBERON:0004810!4.20e-11!12;UBERON:0004876!1.04e-10!20;UBERON:0000489!1.42e-10!32;UBERON:0002298!2.60e-10!8;UBERON:0003076!3.89e-10!15;UBERON:0003057!3.89e-10!15;UBERON:0003887!4.65e-10!21;UBERON:0002113!8.26e-10!27;UBERON:0003918!8.26e-10!27;UBERON:0005095!8.26e-10!27;UBERON:0007687!8.26e-10!27;UBERON:0001851!9.09e-10!16;UBERON:0000353!4.64e-09!17;UBERON:0000483!8.55e-09!309;UBERON:0000119!1.46e-08!312;UBERON:0000369!1.68e-08!4;UBERON:0002435!1.68e-08!4;UBERON:0000204!1.68e-08!4;UBERON:0010082!1.68e-08!4;UBERON:0004733!2.89e-08!12;UBERON:0002028!2.89e-08!12;UBERON:0007277!2.89e-08!12;UBERON:0004111!7.21e-08!241;UBERON:0000064!9.50e-08!219;UBERON:0000058!1.40e-07!26;UBERON:0004732!1.62e-07!13;UBERON:0001781!2.76e-07!3;UBERON:0001782!2.76e-07!3;UBERON:0005424!2.76e-07!3;UBERON:0000966!2.80e-07!5;UBERON:0005388!2.80e-07!5;UBERON:0001802!2.80e-07!5;UBERON:0000200!3.18e-07!6;UBERON:0003886!4.17e-07!63;UBERON:0005383!6.61e-07!3;UBERON:0005382!6.61e-07!3;UBERON:0001896!9.73e-07!3;UBERON:0005290!9.73e-07!3;UBERON:0010096!9.73e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0000966;3.92e-21;5!UBERON:0005388;3.92e-21;5!UBERON:0001802;3.92e-21;5!UBERON:0001781;2.97e-20;3!UBERON:0001782;2.97e-20;3!UBERON:0005383;3.10e-09;3!UBERON:0005382;3.10e-09;3!UBERON:0001225;1.58e-08;12!UBERON:0008987;1.58e-08;12!UBERON:0001874;1.54e-07;1!UBERON:0000369;3.90e-07;4!UBERON:0002435;3.90e-07;4!UBERON:0000204;3.90e-07;4!UBERON:0001851;7.59e-07;15!UBERON:0006555;7.59e-07;15!UBERON:0000353;7.59e-07;15!UBERON:0004819;7.59e-07;15!UBERON:0001285;7.59e-07;15!UBERON:0007684;7.59e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001782,2.78e-20,3;UBERON:0005424,2.78e-20,3;UBERON:0000966,1.07e-17,6;UBERON:0005388,1.07e-17,6;UBERON:0001802,1.07e-17,6;UBERON:0001781,2.33e-15,4;UBERON:0005383,2.85e-09,3;UBERON:0005382,2.85e-09,3;UBERON:0001225,1.42e-08,12;UBERON:0008987,1.42e-08,12;UBERON:0001874,1.64e-07,1;UBERON:0000369,3.66e-07,4;UBERON:0002435,3.66e-07,4;UBERON:0000204,3.66e-07,4;UBERON:0010082,3.66e-07,4;UBERON:0001851,7.01e-07,15;UBERON:0004211,7.01e-07,15;UBERON:0009773,7.01e-07,15;UBERON:0000353,7.01e-07,15;UBERON:0001231,7.01e-07,15;UBERON:0001285,7.01e-07,15;UBERON:0007684,7.01e-07,15;UBERON:0004208,7.01e-07,15 | |||
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| ||
|short_description=p4@GPR143 | |||
}} | }} |
Latest revision as of 15:22, 16 September 2015
Short description: | p4@GPR143 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_GPR143_5end |
Coexpression cluster: | C58_Melanocyte_melanoma_retina_Retinal_eye_migratory_H9 |
Association with transcript: | 0bp_to_uc004cst.1_5end |
EntrezGene: | GPR143 |
HGNC: | 20145 |
UniProt: | P51810 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pigment cell | 7.94e-78 | 14 |
melanocyte | 2.56e-65 | 10 |
melanoblast | 2.56e-65 | 10 |
embryonic stem cell | 6.15e-34 | 5 |
neurecto-epithelial cell | 8.07e-32 | 20 |
columnar/cuboidal epithelial cell | 7.87e-28 | 27 |
visual pigment cell | 1.28e-26 | 4 |
light melanocyte | 5.31e-21 | 3 |
retinal pigment epithelial cell | 2.78e-20 | 3 |
ecto-epithelial cell | 5.35e-18 | 34 |
migratory neural crest cell | 7.32e-14 | 41 |
neurectodermal cell | 2.97e-09 | 59 |
kidney cortical cell | 1.42e-08 | 12 |
renal cortical epithelial cell | 1.42e-08 | 12 |
dark melanocyte | 5.33e-08 | 1 |
ectodermal cell | 2.52e-07 | 72 |
epithelial cell | 3.59e-07 | 253 |
epithelial cell of nephron | 7.01e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
pigmented layer of retina | 2.78e-20 | 3 |
presumptive retinal pigmented epithelium | 2.78e-20 | 3 |
retina | 1.07e-17 | 6 |
photoreceptor array | 1.07e-17 | 6 |
posterior segment of eyeball | 1.07e-17 | 6 |
layer of retina | 2.33e-15 | 4 |
caudate-putamen | 2.85e-09 | 3 |
dorsal striatum | 2.85e-09 | 3 |
cortex of kidney | 1.42e-08 | 12 |
renal parenchyma | 1.42e-08 | 12 |
putamen | 1.64e-07 | 1 |
corpus striatum | 3.66e-07 | 4 |
striatum | 3.66e-07 | 4 |
ventral part of telencephalon | 3.66e-07 | 4 |
future corpus striatum | 3.66e-07 | 4 |
cortex | 7.01e-07 | 15 |
nephron epithelium | 7.01e-07 | 15 |
renal tubule | 7.01e-07 | 15 |
parenchyma | 7.01e-07 | 15 |
nephron tubule | 7.01e-07 | 15 |
nephron | 7.01e-07 | 15 |
uriniferous tubule | 7.01e-07 | 15 |
nephrogenic mesenchyme | 7.01e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
melanoma | 3.01e-14 | 2 |