FFCP PHASE1:Mm9::chr17:47642034..47642054,+: Difference between revisions
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{{FFCP|EntrezGene=12445|HGNC=|MCL_coexpression_id=4|UniProt=P30282,Q3TSW4,Q3TWY0|association_with_transcript=34bp_to_ENSMUST00000171031,NM_001081635,NM_001081636,uc008cvk.1,uc008cvl.1,uc008cvm.1_5end|description=CAGE_peak_7_at_Ccnd3_5end|id=chr17:47642034..47642054,+|ontology_enrichment_celltype=CL:0002031!4.57e-08!25;CL:0000838!3.35e-07!12;CL:0000542!3.61e-07!13;CL:0000051!3.61e-07!13;CL:0000988!7.49e-07!32;CL:0002032!7.49e-07!32;CL:0000037!7.49e-07!32;CL:0000566!7.49e-07!32;CL:0000837!7.49e-07!32|ontology_enrichment_celltype_v019_2=CL:0002031,3.63e-12,25;CL:0000988,8.49e-11,32;CL:0002032,8.49e-11,32;CL:0000037,8.49e-11,32;CL:0000837,8.49e-11,32;CL:0000838,2.47e-09,12;CL:0000542,2.74e-09,13;CL:0000051,2.74e-09,13;CL:0000084,1.25e-08,11;CL:0000827,1.25e-08,11;CL:0000791,9.30e-08,9;CL:0000789,9.30e-08,9;CL:0002420,9.30e-08,9;CL:0002419,9.30e-08,9;CL:0000790,9.30e-08,9;CL:0000738,3.14e-07,17;CL:0002087,3.14e-07,17;CL:0000624,5.97e-07,8|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004177!1.79e-12!29;UBERON:0002390!5.20e-11!45;UBERON:0003061!5.20e-11!45;UBERON:0002193!5.74e-11!48;UBERON:0003408!9.66e-11!24;UBERON:0002370!3.14e-10!23;UBERON:0000974!3.14e-10!23;UBERON:0004807!3.14e-10!23;UBERON:0005058!3.14e-10!23;UBERON:0003351!3.14e-10!23;UBERON:0009113!3.14e-10!23;UBERON:0003295!3.14e-10!23;UBERON:0009722!3.14e-10!23;UBERON:0005562!3.14e-10!23;UBERON:0007690!3.14e-10!23;UBERON:0006562!5.72e-10!24;UBERON:0001557!5.72e-10!24;UBERON:0001042!5.72e-10!24;UBERON:0008814!5.72e-10!24;UBERON:0009145!5.72e-10!24;UBERON:0001004!1.32e-09!42;UBERON:0003081!1.56e-09!88;UBERON:0000065!3.81e-09!41;UBERON:0000926!8.76e-09!193;UBERON:0004120!8.76e-09!193;UBERON:0006603!8.76e-09!193;UBERON:0003104!1.74e-07!131;UBERON:0009142!1.74e-07!131;UBERON:0000072!2.03e-07!27|ontology_enrichment_uberon_v019_2=UBERON:0004177,7.05e-18,29;UBERON:0005057,7.05e-18,29;UBERON:0002390,2.72e-17,45;UBERON:0003061,2.72e-17,45;UBERON:0002193,1.07e-16,48;UBERON:0002405,1.07e-16,48;UBERON:0003408,1.69e-15,24;UBERON:0002370,8.72e-15,23;UBERON:0000974,8.72e-15,23;UBERON:0004807,8.72e-15,23;UBERON:0005058,8.72e-15,23;UBERON:0003351,8.72e-15,23;UBERON:0009113,8.72e-15,23;UBERON:0003295,8.72e-15,23;UBERON:0009722,8.72e-15,23;UBERON:0005562,8.72e-15,23;UBERON:0007690,8.72e-15,23;UBERON:0000077,1.05e-14,35;UBERON:0006562,8.55e-14,24;UBERON:0001557,8.55e-14,24;UBERON:0001042,8.55e-14,24;UBERON:0008814,8.55e-14,24;UBERON:0009145,8.55e-14,24;UBERON:0001004,6.30e-13,42;UBERON:0000065,2.73e-12,41;UBERON:0000072,2.72e-11,27;UBERON:0003081,2.00e-09,87;UBERON:0001041,2.21e-08,80;UBERON:0000926,7.12e-08,120;UBERON:0004120,7.12e-08,120;UBERON:0006603,7.12e-08,120;UBERON:0007811,1.98e-07,36;UBERON:0002530,6.30e-07,65|phase1_expression=0.320297694209588,0,0,0.30246421130683,0,0.33575854382378,0.934450562382103,21.1762250444185,3.66050677594334,5.14941957908386,2.05461561870606,2.15384829287408,36.4657554753468,29.0235736031071,3.99731714178795,3.84703008040669,2.09868563438444,9.14840279538889,10.9691546884591,12.7316895539409,3.74190476664707,3.3758923408301,1.82839852397255,0.799962113967033,0.22940928106717,0,0,0,0.380046838912748,0.252030129759931,0,1.27006134691926,1.23012957516914,15.8481681015439,1.1554064790051,0.831173226792462,0,15.9042019680025,4.6880120671428,8.89990364755457,2.94115744015507,6.14740936462601,1.45653105909346,0,0.202753862439029,0.550640256485045,2.34717403304412,0,0.439372365468944,0,0.279972843250725,0,5.87239121202077,25.3876749703971,14.452033363126,0.514518872071894,0.286533439938757,1.03134418455488,0,0,0,0.338844532069132,0,0,1.97773272513395,0.7104801149461,0,0,0.103689612308478,0.270011876663381,0,0,0,0,0,0,0,0,0,0,0,0,0.558365998002762,0,0,0,0.142371680799103,0.186399445825301,0.302904773332736,0.0755715601067855,0.869593466105033,0,0,0.539703191637817,0,0,1.40444420131752,0,0,0,0.14084341977668,1.28326477414318,0,0,0,0.253359865475099,0,3.19714863213368,11.9111426477699,2.22663208597237,0.867426633830679,0.608930956624282,0.461230994512117,1.20578112442098,1.29347577849275,0.502666365318702,0.988779870937496,0.722996784599558,4.42305275974937,0.485300549842228,3.09178125844551,2.90925151881133,0,0,0,0.510914110417183,2.15667224110656,0,1.14363204365758,0.299581278809645,0,0,0,0.767146371990992,0.41557608911912,0.162241263067758,1.2220723662038,2.73695335342205,1.51633655060205,0.631325567659422,0.390361328888111,0.229902104433473,0.720248519221397,0,0.544291993210623,0.12811372028485,0.374806898238915,0.776110112217047,0.862271971731369,1.13463648100692,1.05570674498369,0.876782929710299,1.11218899690239,0.348252166522167,0.61734640922383,0.59710280045548,0,1.02939162845886,0.568326998791185,0.828503090142008,0.469052119962192,0.36012412292203,0.946978942340841,0.393528463494808,0.771335564436891,0.465067889500816,0.804820204198858,1.98501082024188,0.329119699826961,0.32833492815819,1.13496333364198,0.730999937126662,0.219550115291051,1.07365135008297,0.210289948564127,0.10290461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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=12445 | |||
|HGNC= | |||
|MCL_coexpression_id=4 | |||
|TSSclassifier=NA | |||
|UniProt=P30282,Q3TSW4,Q3TWY0 | |||
|association_with_transcript=34bp_to_ENSMUST00000171031,NM_001081635,NM_001081636,uc008cvk.1,uc008cvl.1,uc008cvm.1_5end | |||
|cluster_id=chr17:47642034..47642054,+ | |||
|description=CAGE_peak_7_at_Ccnd3_5end | |||
|id=chr17:47642034..47642054,+ | |||
|ontology_enrichment_celltype=CL:0002031!4.57e-08!25;CL:0000838!3.35e-07!12;CL:0000542!3.61e-07!13;CL:0000051!3.61e-07!13;CL:0000988!7.49e-07!32;CL:0002032!7.49e-07!32;CL:0000037!7.49e-07!32;CL:0000566!7.49e-07!32;CL:0000837!7.49e-07!32 | |||
|ontology_enrichment_celltype_v019_2=CL:0002031,3.63e-12,25;CL:0000988,8.49e-11,32;CL:0002032,8.49e-11,32;CL:0000037,8.49e-11,32;CL:0000837,8.49e-11,32;CL:0000838,2.47e-09,12;CL:0000542,2.74e-09,13;CL:0000051,2.74e-09,13;CL:0000084,1.25e-08,11;CL:0000827,1.25e-08,11;CL:0000791,9.30e-08,9;CL:0000789,9.30e-08,9;CL:0002420,9.30e-08,9;CL:0002419,9.30e-08,9;CL:0000790,9.30e-08,9;CL:0000738,3.14e-07,17;CL:0002087,3.14e-07,17;CL:0000624,5.97e-07,8 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004177!1.79e-12!29;UBERON:0002390!5.20e-11!45;UBERON:0003061!5.20e-11!45;UBERON:0002193!5.74e-11!48;UBERON:0003408!9.66e-11!24;UBERON:0002370!3.14e-10!23;UBERON:0000974!3.14e-10!23;UBERON:0004807!3.14e-10!23;UBERON:0005058!3.14e-10!23;UBERON:0003351!3.14e-10!23;UBERON:0009113!3.14e-10!23;UBERON:0003295!3.14e-10!23;UBERON:0009722!3.14e-10!23;UBERON:0005562!3.14e-10!23;UBERON:0007690!3.14e-10!23;UBERON:0006562!5.72e-10!24;UBERON:0001557!5.72e-10!24;UBERON:0001042!5.72e-10!24;UBERON:0008814!5.72e-10!24;UBERON:0009145!5.72e-10!24;UBERON:0001004!1.32e-09!42;UBERON:0003081!1.56e-09!88;UBERON:0000065!3.81e-09!41;UBERON:0000926!8.76e-09!193;UBERON:0004120!8.76e-09!193;UBERON:0006603!8.76e-09!193;UBERON:0003104!1.74e-07!131;UBERON:0009142!1.74e-07!131;UBERON:0000072!2.03e-07!27 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004177,7.05e-18,29;UBERON:0005057,7.05e-18,29;UBERON:0002390,2.72e-17,45;UBERON:0003061,2.72e-17,45;UBERON:0002193,1.07e-16,48;UBERON:0002405,1.07e-16,48;UBERON:0003408,1.69e-15,24;UBERON:0002370,8.72e-15,23;UBERON:0000974,8.72e-15,23;UBERON:0004807,8.72e-15,23;UBERON:0005058,8.72e-15,23;UBERON:0003351,8.72e-15,23;UBERON:0009113,8.72e-15,23;UBERON:0003295,8.72e-15,23;UBERON:0009722,8.72e-15,23;UBERON:0005562,8.72e-15,23;UBERON:0007690,8.72e-15,23;UBERON:0000077,1.05e-14,35;UBERON:0006562,8.55e-14,24;UBERON:0001557,8.55e-14,24;UBERON:0001042,8.55e-14,24;UBERON:0008814,8.55e-14,24;UBERON:0009145,8.55e-14,24;UBERON:0001004,6.30e-13,42;UBERON:0000065,2.73e-12,41;UBERON:0000072,2.72e-11,27;UBERON:0003081,2.00e-09,87;UBERON:0001041,2.21e-08,80;UBERON:0000926,7.12e-08,120;UBERON:0004120,7.12e-08,120;UBERON:0006603,7.12e-08,120;UBERON:0007811,1.98e-07,36;UBERON:0002530,6.30e-07,65 | |||
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| |||
|short_description=p7@Ccnd3 | |||
}} |
Latest revision as of 14:16, 26 September 2015
Short description: | p7@Ccnd3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_7_at_Ccnd3_5end |
Coexpression cluster: | MCL_coexpression_mm9:4 |
Association with transcript: | 34bp_to_ENSMUST00000171031, NM_001081635, NM_001081636, uc008cvk.1, uc008cvl.1, uc008cvm.1_5end |
EntrezGene: | Ccnd3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic lineage restricted progenitor cell | 3.63e-12 | 25 |
hematopoietic cell | 8.49e-11 | 32 |
hematopoietic oligopotent progenitor cell | 8.49e-11 | 32 |
hematopoietic stem cell | 8.49e-11 | 32 |
hematopoietic multipotent progenitor cell | 8.49e-11 | 32 |
lymphoid lineage restricted progenitor cell | 2.47e-09 | 12 |
lymphocyte | 2.74e-09 | 13 |
common lymphoid progenitor | 2.74e-09 | 13 |
T cell | 1.25e-08 | 11 |
pro-T cell | 1.25e-08 | 11 |
mature alpha-beta T cell | 9.30e-08 | 9 |
alpha-beta T cell | 9.30e-08 | 9 |
immature T cell | 9.30e-08 | 9 |
mature T cell | 9.30e-08 | 9 |
immature alpha-beta T cell | 9.30e-08 | 9 |
leukocyte | 3.14e-07 | 17 |
nongranular leukocyte | 3.14e-07 | 17 |
CD4-positive, alpha-beta T cell | 5.97e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
hemopoietic organ | 7.05e-18 | 29 |
immune organ | 7.05e-18 | 29 |
hematopoietic system | 2.72e-17 | 45 |
blood island | 2.72e-17 | 45 |
hemolymphoid system | 1.07e-16 | 48 |
immune system | 1.07e-16 | 48 |
gland of gut | 1.69e-15 | 24 |
thymus | 8.72e-15 | 23 |
neck | 8.72e-15 | 23 |
respiratory system epithelium | 8.72e-15 | 23 |
hemolymphoid system gland | 8.72e-15 | 23 |
pharyngeal epithelium | 8.72e-15 | 23 |
thymic region | 8.72e-15 | 23 |
pharyngeal gland | 8.72e-15 | 23 |
entire pharyngeal arch endoderm | 8.72e-15 | 23 |
thymus primordium | 8.72e-15 | 23 |
early pharyngeal endoderm | 8.72e-15 | 23 |
mixed endoderm/mesoderm-derived structure | 1.05e-14 | 35 |
pharynx | 8.55e-14 | 24 |
upper respiratory tract | 8.55e-14 | 24 |
chordate pharynx | 8.55e-14 | 24 |
pharyngeal arch system | 8.55e-14 | 24 |
pharyngeal region of foregut | 8.55e-14 | 24 |
respiratory system | 6.30e-13 | 42 |
respiratory tract | 2.73e-12 | 41 |
segment of respiratory tract | 2.72e-11 | 27 |
lateral plate mesoderm | 2.00e-09 | 87 |
foregut | 2.21e-08 | 80 |
mesoderm | 7.12e-08 | 120 |
mesoderm-derived structure | 7.12e-08 | 120 |
presumptive mesoderm | 7.12e-08 | 120 |
craniocervical region | 1.98e-07 | 36 |
gland | 6.30e-07 | 65 |