FFCP PHASE1:Hg19::chr5:149546334..149546364,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1044 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1805 | |||
|TSSclassifier=strong | |||
|UniProt=P47902,Q14DX0 | |||
|association_with_transcript=0bp_to_ENST00000231656,ENST00000377812,ENST00000394298,NM_001804,uc003lrq.2_5end | |||
|cluster_id=chr5:149546334..149546364,+ | |||
|coexpression_cluster_id=C201 | |||
|description=CAGE_peak_1_at_CDX1_5end | |||
|id=chr5:149546334..149546364,+ | |||
|ontology_enrichment_celltype=CL:0002322!9.96e-19!5;CL:0000039!1.62e-13!7;CL:0000586!1.62e-13!7 | |||
|ontology_enrichment_celltype_v019=CL:0000039;2.77e-19;7!CL:0000586;2.77e-19;7!CL:0002322;3.74e-15;5!CL:0000148;7.62e-08;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000039,2.84e-19,7;CL:0000586,2.84e-19,7;CL:0002322,3.65e-15,5;CL:0000148,7.53e-08,10;CL:0000541,7.53e-08,10 | |||
|ontology_enrichment_development_v019=UBERON:0009117;1.43e-13;10!UBERON:0005564;1.43e-13;10!UBERON:0001045;7.83e-10;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000473!1.30e-16!8;UBERON:0000059!1.29e-12!11;UBERON:0000160!2.83e-12!27;UBERON:0003135!6.86e-12!11;UBERON:0005409!5.22e-11!35;UBERON:0004907!1.00e-07!5;UBERON:0001155!2.57e-07!9 | |||
|ontology_enrichment_uberon_v019=UBERON:0000160;8.84e-46;17!UBERON:0005409;9.08e-43;22!UBERON:0000059;1.18e-27;11!UBERON:0002108;1.98e-27;4!UBERON:0004921;6.66e-26;33!UBERON:0000922;6.53e-18;49!UBERON:0000473;6.61e-17;8!UBERON:0004907;6.37e-16;5!UBERON:0001155;1.39e-15;9!UBERON:0003135;2.35e-12;11!UBERON:0002114;4.85e-12;2!UBERON:0001154;7.83e-10;1!UBERON:0001153;7.83e-10;1!UBERON:0009854;7.83e-10;1!UBERON:0001555;9.60e-10;54!UBERON:0001052;1.72e-09;4!UBERON:0004913;2.17e-09;1!UBERON:0003703;2.17e-09;1!UBERON:0001174;2.17e-09;1!UBERON:0004914;2.17e-09;1!UBERON:0001007;2.89e-08;81 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,8.24e-46,17;UBERON:0005409,1.19e-37,25;UBERON:0000059,1.18e-27,11;UBERON:0002108,1.79e-27,4;UBERON:0000473,6.75e-17,8;UBERON:0004907,6.37e-16,5;UBERON:0001155,1.36e-15,9;UBERON:0003135,2.38e-12,11;UBERON:0002114,4.46e-12,2;UBERON:0001154,7.50e-10,1;UBERON:0001153,7.50e-10,1;UBERON:0001045,7.50e-10,1;UBERON:0001052,1.76e-09,4;UBERON:0004913,1.91e-09,1;UBERON:0003703,1.91e-09,1;UBERON:0001174,1.91e-09,1;UBERON:0004914,1.91e-09,1;UBERON:0004921,3.35e-08,118;UBERON:0001007,1.59e-07,145;UBERON:0001555,1.59e-07,145;UBERON:0007026,1.59e-07,145 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0.204000691244253,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.731842236777572,0.662648841607426,2.67246068599892,1.96956004529204,1.00928340350251,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.823240336780769,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.501689773854853,0,0,0.223874754722178,0,0,0,0,0,1.64865618636356,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.655894752046633,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.41215701165169,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,37.8508964277672,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23056390438806,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,279.66860263306,123.309844917655,127.094270146194,0,0,0,0.067401132980677,0,0,0,0,0,0,54.4458222218988,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126621591911757,19.7506896562151,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.65983798109815,0,0,0,0,0,0,0,2.08979093004525,0.412618309791701,0,0,0,0,0,0,0.524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157054096250234,0,0,0.1251909307065,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139879507719444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.92212912082159,0,0,0.206686796501184,0.126831620387814,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,86.323826300647,37.4395075408893,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.485710993059139,0,0,0,0.22589216407792,0,0,153.653748792918,138.785320920013,0,0,0,0,0,0.4226557275834,0,0,0,0,0,0,0,1.46067277649303,0,0,0,0,0,63.4832208618481,0,0,0,0,0.437062287854782,0,21.4176542458162,5.34434810531121,29.2225780520807,4.011320628678,0.303114792872958,0.535928260312357,0,0,0,0.23806443146374,0.516711278688049,0.31037357147929,0,0,0,0.217716747896961,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p1@CDX1 | |||
}} |
Latest revision as of 03:14, 16 September 2015
Short description: | p1@CDX1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CDX1_5end |
Coexpression cluster: | C201_colon_small_adenocarcinoma_duodenum_temporal_signet_gall |
Association with transcript: | 0bp_to_ENST00000231656, ENST00000377812, ENST00000394298, NM_001804, uc003lrq.2_5end |
EntrezGene: | CDX1 |
HGNC: | 1805 |
UniProt: | P47902Q14DX0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
germ line cell | 2.84e-19 | 7 |
germ cell | 2.84e-19 | 7 |
embryonic stem cell | 3.65e-15 | 5 |
melanocyte | 7.53e-08 | 10 |
melanoblast | 7.53e-08 | 10 |
Ontology term | p-value | n |
---|---|---|
intestine | 8.24e-46 | 17 |
gastrointestinal system | 1.19e-37 | 25 |
large intestine | 1.18e-27 | 11 |
small intestine | 1.79e-27 | 4 |
testis | 6.75e-17 | 8 |
lower digestive tract | 6.37e-16 | 5 |
colon | 1.36e-15 | 9 |
male reproductive organ | 2.38e-12 | 11 |
duodenum | 4.46e-12 | 2 |
vermiform appendix | 7.50e-10 | 1 |
caecum | 7.50e-10 | 1 |
midgut | 7.50e-10 | 1 |
rectum | 1.76e-09 | 4 |
hepatopancreatic ampulla | 1.91e-09 | 1 |
extrahepatic bile duct | 1.91e-09 | 1 |
common bile duct | 1.91e-09 | 1 |
duodenal papilla | 1.91e-09 | 1 |
subdivision of digestive tract | 3.35e-08 | 118 |
digestive system | 1.59e-07 | 145 |
digestive tract | 1.59e-07 | 145 |
primitive gut | 1.59e-07 | 145 |