FFCP PHASE1:Hg19::chr7:27153454..27153469,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr7:27153454..27153469,-
|short_description=p2@HOXA3
|description=CAGE_peak_2_at_HOXA3_5end
|association_with_transcript=0bp_to_ENST00000522456_5end
|EntrezGe...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3200 | |EntrezGene=3200 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5104 | |HGNC=5104 | ||
|TSSclassifier=strong | |||
|UniProt=F2Z3A4 | |UniProt=F2Z3A4 | ||
|association_with_transcript=0bp_to_ENST00000522456_5end | |||
|cluster_id=chr7:27153454..27153469,- | |||
|coexpression_cluster_id=C2890 | |||
|description=CAGE_peak_2_at_HOXA3_5end | |||
|id=chr7:27153454..27153469,- | |||
|ontology_enrichment_celltype=CL:0000222!5.68e-18!119;CL:0000076!1.89e-17!62;CL:0000066!3.67e-16!254;CL:0000220!2.23e-12!246;CL:0002321!5.85e-12!248;CL:0000213!7.08e-11!57;CL:0000215!7.08e-11!57;CL:0000077!9.93e-10!19;CL:1000507!2.73e-08!12;CL:1000494!2.73e-08!12;CL:0000183!4.12e-08!59;CL:0000187!9.36e-08!54;CL:1000449!2.62e-07!16;CL:0000192!3.28e-07!42;CL:0000514!3.28e-07!42;CL:1000497!4.20e-07!18;CL:0002518!4.20e-07!18 | |||
|ontology_enrichment_celltype_v019=CL:1000507;6.69e-11;10!CL:1000494;6.69e-11;10!CL:0000077;9.83e-11;19!CL:1000449;9.30e-09;15!CL:1000497;1.06e-08;17!CL:0002518;1.06e-08;17!CL:0000076;3.23e-07;63 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.15e-17,253;CL:0000076,2.71e-15,63;CL:0000222,6.17e-13,121;CL:1000507,5.01e-11,10;CL:1000494,5.01e-11,10;CL:0000077,1.12e-10,19;CL:0000213,1.33e-09,58;CL:0000215,1.33e-09,58;CL:0002321,2.72e-09,250;CL:1000449,6.58e-09,15;CL:1000497,7.61e-09,17;CL:0002518,7.61e-09,17 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:0050687!1.82e-11!143;DOID:305!9.44e-11!106;DOID:162!1.15e-07!235;DOID:14566!1.36e-07!239;DOID:1749!1.91e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:1749;1.43e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:0050687,3.06e-14,143;DOID:305,2.20e-13,106;DOID:162,5.69e-11,235;DOID:14566,3.15e-10,239;DOID:1749,1.14e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0002100!1.33e-20!216;UBERON:0005177!9.11e-19!107;UBERON:0003914!9.86e-19!118;UBERON:0003104!9.74e-18!238;UBERON:0009142!9.74e-18!238;UBERON:0000466!8.41e-16!126;UBERON:0009569!2.58e-15!113;UBERON:0000464!1.81e-14!104;UBERON:0000490!2.89e-14!138;UBERON:0001981!1.51e-13!60;UBERON:0007500!1.51e-13!60;UBERON:0004537!1.51e-13!60;UBERON:0006965!1.51e-13!60;UBERON:0000483!1.64e-13!309;UBERON:0004111!2.73e-13!241;UBERON:0000055!4.68e-13!69;UBERON:0003886!6.13e-13!63;UBERON:0000119!6.47e-13!312;UBERON:0005256!2.84e-12!143;UBERON:0000926!3.45e-12!448;UBERON:0004120!3.45e-12!448;UBERON:0006603!3.45e-12!448;UBERON:0002417!9.34e-12!61;UBERON:0000916!9.34e-12!61;UBERON:0000025!1.36e-11!194;UBERON:0006554!5.91e-11!44;UBERON:0004872!9.35e-11!84;UBERON:0004921!1.32e-10!129;UBERON:0004185!1.32e-10!129;UBERON:0002553!1.37e-10!70;UBERON:0001008!2.07e-10!45;UBERON:0005172!2.11e-10!55;UBERON:0005173!2.11e-10!55;UBERON:0003064!2.15e-10!37;UBERON:0000489!2.44e-10!32;UBERON:0001637!3.67e-10!42;UBERON:0003509!3.67e-10!42;UBERON:0004572!3.67e-10!42;UBERON:0002049!6.72e-10!79;UBERON:0007798!6.72e-10!79;UBERON:0000481!2.01e-09!347;UBERON:0000477!2.63e-09!286;UBERON:0001007!1.17e-08!155;UBERON:0001555!1.17e-08!155;UBERON:0007026!1.17e-08!155;UBERON:0003103!1.19e-08!69;UBERON:0000077!1.22e-08!130;UBERON:0002113!1.33e-08!27;UBERON:0003918!1.33e-08!27;UBERON:0005095!1.33e-08!27;UBERON:0007687!1.33e-08!27;UBERON:0000475!2.69e-08!365;UBERON:0009773!2.73e-08!12;UBERON:0001231!2.73e-08!12;UBERON:0004810!2.73e-08!12;UBERON:0004119!4.58e-08!169;UBERON:0000925!4.58e-08!169;UBERON:0006595!4.58e-08!169;UBERON:0005911!5.95e-08!82;UBERON:0004573!8.07e-08!33;UBERON:0004571!8.07e-08!33;UBERON:0002385!8.34e-08!63;UBERON:0001015!8.34e-08!63;UBERON:0000383!8.34e-08!63;UBERON:0001134!1.28e-07!61;UBERON:0002036!1.28e-07!61;UBERON:0003082!1.28e-07!61;UBERON:0006555!1.68e-07!17;UBERON:0005103!1.68e-07!17;UBERON:0000083!1.68e-07!17;UBERON:0009201!1.68e-07!17;UBERON:0004819!1.68e-07!17;UBERON:0006553!1.68e-07!17;UBERON:0003074!1.68e-07!17;UBERON:0003060!1.68e-07!17;UBERON:0000080!1.81e-07!18;UBERON:0002120!1.81e-07!18;UBERON:0004875!1.81e-07!18;UBERON:0005721!1.81e-07!18;UBERON:0005754!1.81e-07!18;UBERON:0007297!1.81e-07!18;UBERON:0002323!1.96e-07!46;UBERON:0004211!2.62e-07!16;UBERON:0001285!2.62e-07!16;UBERON:0007684!2.62e-07!16;UBERON:0003220!2.62e-07!16;UBERON:0004208!2.62e-07!16;UBERON:0000922!3.74e-07!612;UBERON:0004458!4.55e-07!49;UBERON:0000923!4.73e-07!604;UBERON:0005291!4.73e-07!604;UBERON:0006598!4.73e-07!604;UBERON:0002532!4.73e-07!604;UBERON:0003887!5.71e-07!21;UBERON:0002050!6.21e-07!605;UBERON:0005423!6.21e-07!605;UBERON:0005153!6.46e-07!37 | |||
|ontology_enrichment_uberon_v019=UBERON:0004211;6.69e-11;10!UBERON:0009773;6.69e-11;10!UBERON:0001231;6.69e-11;10!UBERON:0004810;6.69e-11;10!UBERON:0000489;8.97e-10;29!UBERON:0002113;3.75e-09;24!UBERON:0011143;3.75e-09;24!UBERON:0003914;4.04e-09;74!UBERON:0006555;9.30e-09;15!UBERON:0004819;9.30e-09;15!UBERON:0001285;9.30e-09;15!UBERON:0007684;9.30e-09;15!UBERON:0001851;6.64e-08;15!UBERON:0000025;7.25e-08;93!UBERON:0002417;1.84e-07;58!UBERON:0000916;1.84e-07;58!UBERON:0006554;2.47e-07;30!UBERON:0001008;2.47e-07;30!UBERON:0005172;3.73e-07;52!UBERON:0005173;3.73e-07;52!UBERON:0005177;4.80e-07;99 | |||
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| ||
|short_description=p2@HOXA3 | |||
}} | }} |
Latest revision as of 01:03, 18 September 2015
Short description: | p2@HOXA3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_HOXA3_5end |
Coexpression cluster: | C2890_Smooth_glioma_clear_Renal_endometrial_mesothelioma_gastric |
Association with transcript: | 0bp_to_ENST00000522456_5end |
EntrezGene: | HOXA3 |
HGNC: | 5104 |
UniProt: | F2Z3A4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.15e-17 | 253 |
squamous epithelial cell | 2.71e-15 | 63 |
mesodermal cell | 6.17e-13 | 121 |
kidney tubule cell | 5.01e-11 | 10 |
nephron tubule epithelial cell | 5.01e-11 | 10 |
mesothelial cell | 1.12e-10 | 19 |
lining cell | 1.33e-09 | 58 |
barrier cell | 1.33e-09 | 58 |
embryonic cell | 2.72e-09 | 250 |
epithelial cell of nephron | 6.58e-09 | 15 |
kidney cell | 7.61e-09 | 17 |
kidney epithelial cell | 7.61e-09 | 17 |
Ontology term | p-value | n |
---|---|---|
cell type cancer | 3.06e-14 | 143 |
carcinoma | 2.20e-13 | 106 |
cancer | 5.69e-11 | 235 |
disease of cellular proliferation | 3.15e-10 | 239 |
squamous cell carcinoma | 1.14e-07 | 14 |