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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00004886
|accession_numbers=CAGE;DRX008194;DRR009066;DRZ000491;DRZ001876;DRZ011841;DRZ013226
|ancestors_in_anatomy_facet=
|ancestors_in_anatomy_facet=
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
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r19:37096194..37096235,+!p1@ZNF382!0.35!5.82!ZNF382;;chr19:52408285..52408310,-!p3@ZNF649!0.35!4.05!ZNF649;;chr1:45805372..45805413,+!p4@TOE1!0.35!3.54!TOE1;;chr2:113033141..113033162,+!p2@ZC3H6!0.35!3.54!ZC3H6;;chr14:64970361..64970389,-!p4@ZBTB25!0.35!3.29!ZBTB25;;chr2:28616316..28616327,+!p5@FOSL2!0.35!2.78!FOSL2;;chr4:87857474..87857489,+!p7@AFF1!0.35!2.78!AFF1;;chr11:3400442..3400453,-!p2@ZNF195!0.35!2.53!ZNF195;;chr2:27805866..27805879,+!p2@ZNF512!0.35!2.28!ZNF512;;chrX:131624056..131624069,-!p2@MBNL3!0.35!2.02!MBNL3;;chr3:150126200..150126211,+!p11@TSC22D2!0.35!1.77!TSC22D2;;chr8:72756023..72756055,-!p6@MSC!0.35!1.77!MSC;;chr12:57505581..57505598,-!p4@STAT6!0.35!1.77!STAT6;;chr14:58765305..58765324,+!p4@ARID4A!0.35!1.77!ARID4A;;chr7:104654708..104654711,+!p6@MLL5!0.35!1.52!MLL5;;chr2:27805971..27805981,+!p3@ZNF512!0.35!1.52!ZNF512;;chr19:21579964..21579975,+!p2@ZNF493!0.35!1.52!ZNF493;;chr2:8822176..8822196,+!p1@ID2!0.34!282.88!ID2;;chr18:32924372..32924430,-!p1@ZNF24!0.34!60.47!ZNF24;;chr1:90460661..90460745,+!p1@ZNF326!0.34!55.66!ZNF326;;chr12:69753448..69753577,+!p1@YEATS4!0.34!38.71!YEATS4;;chr3:101395963..101395993,-!p1@ZBTB11!0.34!29.35!ZBTB11;;chr1:151254738..151254787,+!p1@ZNF687!0.34!17.96!ZNF687;;chr12:133657477..133657529,+!p1@ZNF140!0.34!14.93!ZNF140;;chr12:133614062..133614117,+!p1@ZNF84!0.34!12.40!ZNF84;;chr19:59084647..59084721,-!p1@MZF1!0.34!9.11!MZF1;;chr19:58662139..58662182,-!p1@ZNF329!0.34!8.86!ZNF329;;chr1:43148792..43148849,+!p2@YBX1!0.34!6.83!YBX1;;chr1:67396044..67396071,+!p3@MIER1!0.34!6.33!MIER1;;chr3:63897742..63897797,+!p2@ATXN7!0.34!6.07!ATXN7;;chr19:53445819..53445860,-!p2@ZNF321P,p2@ZNF816-ZNF321P,p2@ZNF816!0.34!5.31!ZNF321P;;chr12:133707172..133707202,+!p2@ZNF10!0.34!3.80!ZNF10;;chr19:19303047..19303079,+!p3@RFXANK!0.34!3.80!RFXANK;;chr19:37407172..37407217,-!p2@ZNF829!0.34!2.78!ZNF829;;chr3:150126440..150126455,+!p9@TSC22D2!0.34!2.28!TSC22D2;;chr11:16759983..16760029,-!p2@SOX6!0.34!2.28!SOX6;;chr7:104752306..104752335,+!p4@MLL5!0.34!2.02!MLL5;;chr7:106809470..106809481,+!p2@HBP1!0.34!2.02!HBP1;;chr19:37407411..37407451,+!p3@ZNF568!0.34!1.77!ZNF568;;chr19:49139477..49139552,-!p4@DBP!0.34!1.77!DBP;;chr19:9649253..9649265,-!p3@ZNF426!0.34!1.77!ZNF426;;chr3:18466660..18466676,-!p5@SATB1!0.34!1.52!SATB1;;chr10:60145155..60145206,+!p1@TFAM!0.33!85.27!TFAM;;chr1:40627038..40627071,+!p1@RLF!0.33!24.80!RLF;;chr4:124374..124410,+!p2@ZNF718!0.33!19.74!ZNF718;;chr9:99540335..99540388,-!p1@ZNF510!0.33!13.66!ZNF510;;chr19:37701396..37701453,-!p1@ZNF585B!0.33!10.37!ZNF585B;;chr2:95831389..95831432,-!p1@ZNF514!0.33!7.84!ZNF514;;chr8:81398444..81398472,+!p1@ZBTB10!0.33!7.08!ZBTB10;;chr20:47894936..47895010,-!p2@ZNFX1!0.33!5.57!ZNFX1;;chr6:42419514..42419606,-!p1@TRERF1!0.33!3.54!TRERF1;;chr18:5295679..5295734,-!p2@ZFP161!0.33!3.54!ZFP161;;chr1:6845562..6845571,+!p3@CAMTA1!0.33!3.29!CAMTA1;;chr16:30621615..30621660,-!p2@ZNF689!0.33!2.78!ZNF689;;chr12:133707021..133707071,-!p2@ZNF891!0.33!2.53!ZNF891;;chr12:432372..432377,-!p3@KDM5A!0.33!2.28!KDM5A;;chr9:2015275..2015287,+!p8@SMARCA2!0.33!2.28!SMARCA2;;chr4:146859626..146859669,-!p2@ZNF827!0.33!2.02!ZNF827;;chr1:27023752..27023799,+!p4@ARID1A!0.33!1.77!ARID1A;;chr14:74386613..74386616,+!p7@ZNF410!0.33!1.77!ZNF410;;chr1:6845598..6845601,+!p5@CAMTA1!0.33!1.52!CAMTA1;;chr19:12175573..12175584,+!p3@ZNF844!0.33!1.52!ZNF844;;chr7:100076765..100076861,-!p1@TSC22D4!0.32!65.53!TSC22D4;;chr5:138629389..138629416,+!p4@MATR3!0.32!22.77!MATR3;;chr1:167190091..167190156,+!p1@POU2F1!0.32!14.42!POU2F1;;chr19:37825540..37825588,+!p2@HKR1!0.32!12.65!HKR1;;chr19:45004556..45004581,-!p1@ZNF180!0.32!10.63!ZNF180;;chr17:47439568..47439641,-!p2@ZNF652!0.32!10.12!ZNF652;;chr9:95640300..95640345,-!p1@ZNF484!0.32!10.12!ZNF484;;chr1:67395982..67396015,+!p4@MIER1!0.32!4.30!MIER1;;chr5:178450797..178450814,+!p1@ZNF879!0.32!4.30!ZNF879;;chr19:40502938..40502987,+!p1@ZNF546!0.32!4.05!ZNF546;;chr19:52552051..52552113,-!p1@ZNF432!0.32!3.29!ZNF432;;chr19:9879350..9879419,-!p2@ZNF846!0.32!3.29!ZNF846;;chr1:6845582..6845591,+!p2@CAMTA1!0.32!3.04!CAMTA1;;chr16:4322948..4322975,-!p3@TFAP4!0.32!3.04!TFAP4;;chr15:56535468..56535521,-!p2@RFX7!0.32!2.78!RFX7;;chr15:57025823..57025832,-!p3@ZNF280D!0.32!2.02!ZNF280D;;chr19:44037334..44037365,+!p2@ZNF575!0.32!2.02!ZNF575;;chr3:178789993..178790049,-!p5@ZMAT3!0.32!2.02!ZMAT3;;chr1:93812261..93812303,+!p2@DR1!0.32!1.52!DR1;;chrX:131624020..131624048,-!p9@MBNL3!0.32!1.52!MBNL3;;chr15:77713095..77713113,+!p5@HMG20A!0.32!1.52!HMG20A;;chrX:118739835..118739862,-!p1@NKRF!0.32!1.27!NKRF;;chrX:101187036..101187056,-!p2@ZMAT1!0.32!1.27!ZMAT1;;chr20:46130846..46130869,+!p5@NCOA3!0.32!1.27!NCOA3;;chr14:64971346..64971357,-!p9@ZBTB25!0.32!1.27!ZBTB25;;chr6:15246261..15246312,+!p1@JARID2!0.31!44.53!JARID2;;chr4:26322616..26322652,+!p1@RBPJ!0.31!39.98!RBPJ;;chr11:62369229..62369289,-!p2@MTA2!0.31!26.82!MTA2;;chr22:41601296..41601355,+!p1@L3MBTL2!0.31!20.75!L3MBTL2;;chr19:37808778..37808827,+!p1@HKR1!0.31!19.99!HKR1;;chr19:53193731..53193767,-!p1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|expression_enrichment_score=chr5:133451294..133451310,+!p2@TCF7!2.10!125.75!TCF7;;chr3:63953435..63953499,+!p1@ATXN7!2.09!122.97!ATXN7;;chr4:109087445..109087463,-!p1@LEF1!1.96!89.57!LEF1;;chr2:192015701..192015743,-!p1@STAT4!1.86!97.16!STAT4;;chr2:231090433..231090469,+!p1@SP140!1.85!70.59!SP140;;chr5:133450365..133450444,+!p1@TCF7!1.79!261.62!TCF7;;chr7:50343634..50343717,+!p2@IKZF1!1.78!58.95!IKZF1;;chr10:35484053..35484076,+!p1@CREM!1.74!130.05!CREM;;chr19:45971246..45971265,+!p1@FOSB!1.72!894.93!FOSB;;chr2:192015750..192015793,-!p2@STAT4!1.71!66.80!STAT4;;chrY:21906594..21906622,-!p1@KDM5D!1.70!48.58!KDM5D;;chr9:3525727..3525828,-!p2@RFX3!1.67!114.36!RFX3;;chr2:231090471..231090504,+!p2@SP140!1.67!45.54!SP140;;chr6:106546808..106546833,+!p3@PRDM1!1.65!54.91!PRDM1;;chr10:8096631..8096660,+!p1@GATA3!1.65!52.12!GATA3;;chr19:54058073..54058088,+!p1@ZNF331!1.63!42.00!ZNF331;;chr17:45810594..45810608,+!p1@TBX21!1.63!41.75!TBX21;;chr3:71542615..71542644,-!p12@FOXP1!1.60!38.71!FOXP1;;chr17:37934365..37934387,-!p2@IKZF3!1.60!38.46!IKZF3;;chr5:133451347..133451358,+!p3@TCF7!1.59!38.21!TCF7;;chr15:60884706..60884743,-!p1@RORA!1.54!168.51!RORA;;chr19:16435625..16435682,+!p1@KLF2!1.52!972.86!KLF2;;chr20:50159198..50159299,-!p1@NFATC2!1.52!46.30!NFATC2;;chr19:54041669..54041697,+!p2@ZNF331!1.51!31.63!ZNF331;;chr9:117150254..117150271,-!p1@AKNA!1.49!78.69!AKNA;;chr10:8096772..8096787,+!p2@GATA3!1.49!35.17!GATA3;;chr2:68592406..68592424,+!p1@PLEK!1.49!30.11!PLEK;;chr2:157189180..157189290,-!p1@NR4A2!1.48!147.76!NR4A2;;chr1:25256756..25256774,-!p1@RUNX3!1.45!50.35!RUNX3;;chr14:75745523..75745537,+!p1@FOS!1.38!2655.95!FOS;;chr10:35416142..35416169,+!p3@CREM!1.38!58.95!CREM;;chr21:36421535..36421610,-!p2@RUNX1!1.36!76.41!RUNX1;;chr3:71542684..71542720,-!p18@FOXP1!1.35!21.51!FOXP1;;chrX:106960285..106960299,-!p1@TSC22D3!1.34!542.73!TSC22D3;;chr13:41593425..41593480,-!p1@ELF1!1.34!130.05!ELF1;;chr20:56195474..56195506,-!p1@ZBP1!1.32!19.99!ZBP1;;chr7:50343895..50343936,+!p5@IKZF1!1.31!19.48!IKZF1;;chr14:75988771..75988826,+!p1@BATF!1.30!25.30!BATF;;chr3:18486354..18486377,-!p2@SATB1!1.30!23.78!SATB1;;chr13:74707894..74707947,-!p6@KLF12!1.30!21.00!KLF12;;chr7:50344251..50344288,+!p3@IKZF1!1.30!18.98!IKZF1;;chr6:106546834..106546850,+!p4@PRDM1!1.29!18.72!PRDM1;;chr10:35484090..35484104,+!p6@CREM!1.29!18.72!CREM;;chr17:38497662..38497713,+!p4@RARA!1.28!20.75!RARA;;chr14:64970670..64970712,-!p3@ZBTB25!1.27!37.95!ZBTB25;;chr17:37934204..37934241,-!p3@IKZF3!1.26!17.21!IKZF3;;chr2:68592394..68592405,+!p2@PLEK!1.26!17.21!PLEK;;chr17:38020392..38020477,-!p1@IKZF3!1.25!16.95!IKZF3;;chr6:391743..391759,+!p1@IRF4!1.24!16.19!IRF4;;chr7:50344289..50344323,+!p1@IKZF1!1.24!16.19!IKZF1;;chr8:60031619..60031676,-!p1@TOX!1.23!34.16!TOX;;chr16:79634595..79634620,-!p2@MAF!1.22!28.59!MAF;;chr16:79634624..79634642,-!p1@MAF!1.21!58.70!MAF;;chr6:91006518..91006570,-!p1@BACH2!1.21!34.66!BACH2;;chr5:142814241..142814278,-!p12@NR3C1!1.21!15.18!NR3C1;;chr17:37934280..37934299,-!p6@IKZF3!1.21!15.18!IKZF3;;chr20:56195525..56195556,-!p2@ZBP1!1.20!14.68!ZBP1;;chr2:192015677..192015691,-!p3@STAT4!1.19!14.42!STAT4;;chr3:71542651..71542683,-!p22@FOXP1!1.19!14.42!FOXP1;;chr3:71179699..71179744,-!p2@FOXP1!1.18!103.74!FOXP1;;chr10:3824332..3824425,-!p4@KLF6!1.18!23.02!KLF6;;chr6:106546786..106546802,+!p6@PRDM1!1.17!13.66!PRDM1;;chr11:67007548..67007610,+!p3@KDM2A!1.16!98.68!KDM2A;;chr11:128392273..128392308,-!p2@ETS1!1.16!56.42!ETS1;;chr19:19779619..19779670,+!p1@ZNF101!1.16!37.45!ZNF101;;chr9:102584262..102584276,+!p1@NR4A3!1.16!30.11!NR4A3;;chr3:27763807..27763822,-!p1@EOMES!1.16!13.41!EOMES;;chr11:128392085..128392232,-!p1@ETS1!1.15!436.46!ETS1;;chr19:12902289..12902307,+!p1@JUNB!1.14!2908.71!JUNB;;chr12:72056800..72056834,+!p1@THAP2!1.13!16.95!THAP2;;chr11:128563948..128564003,+!p1@FLI1!1.12!145.49!FLI1;;chr14:64971288..64971316,-!p2@ZBTB25!1.12!37.95!ZBTB25;;chr6:152011654..152011682,+!p1@ESR1!1.12!12.14!ESR1;;chr19:19729477..19729542,-!p1@PBX4!1.10!25.05!PBX4;;chr2:97202991..97203043,+!p3@ARID5A!1.10!11.64!ARID5A;;chr2:208394817..208394834,+!p3@CREB1!1.09!45.54!CREB1;;chr3:71355163..71355209,-!p5@FOXP1!1.09!15.69!FOXP1;;chr8:123793988..123794016,+!p1@ZHX2!1.08!19.74!ZHX2;;chr8:81397846..81397860,+!p3@ZBTB10!1.08!13.92!ZBTB10;;chr14:99738138..99738163,-!p1@BCL11B!1.08!11.13!BCL11B;;chr12:133707204..133707236,+!p1@ZNF10,p2@ZNF268!1.07!61.23!ZNF10;;chr8:81397820..81397836,+!p2@ZBTB10!1.06!13.16!ZBTB10;;chr4:109088940..109089037,-!p4@LEF1!1.05!10.12!LEF1;;chr17:38020516..38020544,-!p5@IKZF3!1.05!10.12!IKZF3;;chr4:38665769..38665801,+!p2@KLF3!1.04!91.34!KLF3;;chr6:106546731..106546755,+!p5@PRDM1!1.04!9.87!PRDM1;;chr10:35485013..35485034,+!p15@CREM!1.04!9.87!CREM;;chr19:45972701..45972774,+!p2@FOSB!1.02!12.90!FOSB;;chr21:36421347..36421380,-!p8@RUNX1!1.02!9.36!RUNX1;;chrY:2803415..2803468,+!p1@ZFY!1.02!9.36!ZFY;;chrY:21906623..21906637,-!p3@KDM5D!1.02!9.36!KDM5D;;chr6:12009042..12009092,+!p6@HIVEP1!1.01!12.14!HIVEP1;;chr5:131826457..131826514,-!p1@IRF1!1.00!356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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000084;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000542;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000624;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000789;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000893;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 37: Line 41:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
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|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252bCD25-CD45RA-%2520memory%2520conventional%2520T%2520cells%252c%2520donor3.CNhs13539.11909-125G1.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252bCD25-CD45RA-%2520memory%2520conventional%2520T%2520cells%252c%2520donor3.CNhs13539.11909-125G1.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD4%252bCD25-CD45RA-%2520memory%2520conventional%2520T%2520cells%252c%2520donor3.CNhs13539.11909-125G1.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD4%252bCD25-CD45RA-%2520memory%2520conventional%2520T%2520cells%252c%2520donor3.CNhs13539.11909-125G1.hg38.nobarcode.ctss.bed.gz
|id=FF:11909-125G1
|id=FF:11909-125G1
|is_a=EFO:0002091;;FF:0000002;;FF:0000210
|is_a=EFO:0002091;;FF:0000002;;FF:0000210
|is_obsolete=
|is_obsolete=
|library_id=CNhs13539
|library_id_phase_based=2:CNhs13539
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11909
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11909
|name=CD4+CD25-CD45RA- memory conventional T cells, donor3
|name=CD4+CD25-CD45RA- memory conventional T cells, donor3
|namespace=
|namespace=
Line 45: Line 60:
|profile_cagescan=,,,
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|profile_hcage=CNhs13539,LSID1029,release012,COMPLETED
|profile_hcage=CNhs13539,LSID1029,release012,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 84: Line 100:
|top_motifs=PAX3,7:3.46237997903;RUNX1..3:3.17427973149;CDX1,2,4:2.96700205598;CREB1:2.92963056442;BPTF:2.81995109378;FOX{D1,D2}:2.79492114221;ELF1,2,4:2.73362284238;FOX{F1,F2,J1}:2.55221773373;RFX2..5_RFXANK_RFXAP:2.4831228154;T:2.3814474236;ATF5_CREB3:2.31430050652;RORA:2.27112965759;FOXO1,3,4:2.17120149928;HMX1:2.13064615707;ATF4:2.0548891404;DMAP1_NCOR{1,2}_SMARC:2.01572285518;RFX1:2.0113766268;ETS1,2:1.95439931704;TLX2:1.79273715636;PDX1:1.77511773078;FOX{I1,J2}:1.77059054919;PAX4:1.62779640038;ZBTB16:1.62466349878;FOXN1:1.56067595983;LEF1_TCF7_TCF7L1,2:1.48669310707;IRF1,2:1.46649569355;SPI1:1.39325458136;PAX2:1.35595089685;GATA6:1.2886239924;ATF2:1.19092291502;ELK1,4_GABP{A,B1}:1.12137464961;TGIF1:1.09489660568;PBX1:1.08745628199;JUN:1.04931608892;SPIB:1.02718341162;BREu{core}:0.966967313076;NKX6-1,2:0.951685060399;NKX2-1,4:0.926944645246;ATF6:0.883477119467;PAX6:0.796766092276;IRF7:0.786907646034;POU1F1:0.723119626178;NFATC1..3:0.719343378999;IKZF2:0.712279319091;TBX4,5:0.696661455506;ALX1:0.658789951141;SOX2:0.630611326332;FOXA2:0.571270397973;NFKB1_REL_RELA:0.569087824606;AHR_ARNT_ARNT2:0.518212560338;NFIL3:0.483891539758;PITX1..3:0.46296132186;YY1:0.454244596403;SNAI1..3:0.44345613775;HIF1A:0.430989437292;CUX2:0.40821379351;CRX:0.362054132148;MAFB:0.342079431908;NFIX:0.324700659899;FOXQ1:0.286540754664;ZEB1:0.286278665291;MYB:0.232900281478;NFE2L1:0.207166028881;STAT1,3:0.199052789083;HOX{A6,A7,B6,B7}:0.189678477737;SPZ1:0.184723847392;FOXP1:0.169711200842;MYOD1:0.148050012294;NANOG{mouse}:0.116577009399;NKX2-2,8:0.113635625739;FOXD3:0.107820134098;EVI1:0.0781172185896;NRF1:0.0760728609961;SOX5:0.0356639230675;NKX3-1:0.0239487188282;LMO2:-0.0126916833097;POU2F1..3:-0.0508944789449;STAT5{A,B}:-0.057946391804;HMGA1,2:-0.061109460871;TAL1_TCF{3,4,12}:-0.0846657516464;VSX1,2:-0.0875218838284;ZNF384:-0.114119927411;FOSL2:-0.123901318435;E2F1..5:-0.147098206468;SREBF1,2:-0.156138477918;AR:-0.17008872252;RBPJ:-0.251795835138;STAT2,4,6:-0.292538040489;NANOG:-0.314968011445;EP300:-0.319072773803;SMAD1..7,9:-0.329365821215;NFY{A,B,C}:-0.333525293471;HBP1_HMGB_SSRP1_UBTF:-0.348927259998;OCT4_SOX2{dimer}:-0.370577313839;PAX8:-0.37952167074;FOXP3:-0.38976151239;AIRE:-0.410333063533;PRRX1,2:-0.425983019499;MYFfamily:-0.432443377886;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.440111171605;FOXM1:-0.446946945543;HNF4A_NR2F1,2:-0.454556744725;ZNF143:-0.460843485224;NR5A1,2:-0.469075584216;ALX4:-0.471460600413;HLF:-0.476047989634;RXRA_VDR{dimer}:-0.482898181988;BACH2:-0.482926857135;HAND1,2:-0.498916822595;HOXA9_MEIS1:-0.512258293217;NFE2L2:-0.523648707926;LHX3,4:-0.525557710383;HNF1A:-0.535739065671;CEBPA,B_DDIT3:-0.543750239098;DBP:-0.56549935808;FOS_FOS{B,L1}_JUN{B,D}:-0.570269107635;POU3F1..4:-0.598069422429;RREB1:-0.652136732747;NFE2:-0.654742405235;HES1:-0.65926320989;GFI1:-0.702735831887;TOPORS:-0.79397750731;MED-1{core}:-0.800087654691;SRF:-0.815210868264;PAX5:-0.816355064615;EGR1..3:-0.839758322942;GCM1,2:-0.851054331623;MEF2{A,B,C,D}:-0.855021336129;GLI1..3:-0.862886900366;NHLH1,2:-0.863471034905;ZBTB6:-0.912287515225;MZF1:-0.934473108211;TFAP4:-0.966992442558;ZNF148:-0.985919699157;GFI1B:-1.00107458617;SOX{8,9,10}:-1.01218307326;PRDM1:-1.01841648422;ZFP161:-1.0421685864;GATA4:-1.06135274684;HOX{A5,B5}:-1.08236564745;UFEwm:-1.08282022863;MYBL2:-1.08737625859;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.08893421276;REST:-1.0951654436;ARID5B:-1.09755333246;ADNP_IRX_SIX_ZHX:-1.117532627;NR1H4:-1.14748138426;SOX17:-1.1516807115;TFDP1:-1.18520958864;MTF1:-1.20676694543;MAZ:-1.22351570581;bHLH_family:-1.23728521585;ZIC1..3:-1.24267961594;ZNF238:-1.24443913868;ZNF423:-1.24694864533;NKX2-3_NKX2-5:-1.26683501392;PPARG:-1.27110205953;PATZ1:-1.30013425635;MTE{core}:-1.35549683503;HSF1,2:-1.38836910755;NR6A1:-1.39042046524;TP53:-1.53833384281;KLF4:-1.54124409426;GTF2I:-1.54649198672;POU5F1:-1.58307073359;ESRRA:-1.60713892373;HOX{A4,D4}:-1.63033756559;TFCP2:-1.63253257801;XBP1:-1.64397828309;TLX1..3_NFIC{dimer}:-1.67229619146;ONECUT1,2:-1.67381864193;TEAD1:-1.68313843257;CDC5L:-1.69794224958;NKX3-2:-1.76796038867;TFAP2B:-1.78291015937;GZF1:-1.80018349768;FOXL1:-1.81211297425;NR3C1:-1.81507531927;TEF:-1.83327888564;POU6F1:-1.87096392229;ESR1:-1.87406315173;HIC1:-1.8962502056;PAX1,9:-1.91005672482;GTF2A1,2:-1.93339510219;TBP:-1.97560760149;EBF1:-2.01519924901;TFAP2{A,C}:-2.10635984705;RXR{A,B,G}:-2.11064351634;EN1,2:-2.12068508441;XCPE1{core}:-2.15728993096;SP1:-2.16259514118;IKZF1:-2.87682411062
|top_motifs=PAX3,7:3.46237997903;RUNX1..3:3.17427973149;CDX1,2,4:2.96700205598;CREB1:2.92963056442;BPTF:2.81995109378;FOX{D1,D2}:2.79492114221;ELF1,2,4:2.73362284238;FOX{F1,F2,J1}:2.55221773373;RFX2..5_RFXANK_RFXAP:2.4831228154;T:2.3814474236;ATF5_CREB3:2.31430050652;RORA:2.27112965759;FOXO1,3,4:2.17120149928;HMX1:2.13064615707;ATF4:2.0548891404;DMAP1_NCOR{1,2}_SMARC:2.01572285518;RFX1:2.0113766268;ETS1,2:1.95439931704;TLX2:1.79273715636;PDX1:1.77511773078;FOX{I1,J2}:1.77059054919;PAX4:1.62779640038;ZBTB16:1.62466349878;FOXN1:1.56067595983;LEF1_TCF7_TCF7L1,2:1.48669310707;IRF1,2:1.46649569355;SPI1:1.39325458136;PAX2:1.35595089685;GATA6:1.2886239924;ATF2:1.19092291502;ELK1,4_GABP{A,B1}:1.12137464961;TGIF1:1.09489660568;PBX1:1.08745628199;JUN:1.04931608892;SPIB:1.02718341162;BREu{core}:0.966967313076;NKX6-1,2:0.951685060399;NKX2-1,4:0.926944645246;ATF6:0.883477119467;PAX6:0.796766092276;IRF7:0.786907646034;POU1F1:0.723119626178;NFATC1..3:0.719343378999;IKZF2:0.712279319091;TBX4,5:0.696661455506;ALX1:0.658789951141;SOX2:0.630611326332;FOXA2:0.571270397973;NFKB1_REL_RELA:0.569087824606;AHR_ARNT_ARNT2:0.518212560338;NFIL3:0.483891539758;PITX1..3:0.46296132186;YY1:0.454244596403;SNAI1..3:0.44345613775;HIF1A:0.430989437292;CUX2:0.40821379351;CRX:0.362054132148;MAFB:0.342079431908;NFIX:0.324700659899;FOXQ1:0.286540754664;ZEB1:0.286278665291;MYB:0.232900281478;NFE2L1:0.207166028881;STAT1,3:0.199052789083;HOX{A6,A7,B6,B7}:0.189678477737;SPZ1:0.184723847392;FOXP1:0.169711200842;MYOD1:0.148050012294;NANOG{mouse}:0.116577009399;NKX2-2,8:0.113635625739;FOXD3:0.107820134098;EVI1:0.0781172185896;NRF1:0.0760728609961;SOX5:0.0356639230675;NKX3-1:0.0239487188282;LMO2:-0.0126916833097;POU2F1..3:-0.0508944789449;STAT5{A,B}:-0.057946391804;HMGA1,2:-0.061109460871;TAL1_TCF{3,4,12}:-0.0846657516464;VSX1,2:-0.0875218838284;ZNF384:-0.114119927411;FOSL2:-0.123901318435;E2F1..5:-0.147098206468;SREBF1,2:-0.156138477918;AR:-0.17008872252;RBPJ:-0.251795835138;STAT2,4,6:-0.292538040489;NANOG:-0.314968011445;EP300:-0.319072773803;SMAD1..7,9:-0.329365821215;NFY{A,B,C}:-0.333525293471;HBP1_HMGB_SSRP1_UBTF:-0.348927259998;OCT4_SOX2{dimer}:-0.370577313839;PAX8:-0.37952167074;FOXP3:-0.38976151239;AIRE:-0.410333063533;PRRX1,2:-0.425983019499;MYFfamily:-0.432443377886;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.440111171605;FOXM1:-0.446946945543;HNF4A_NR2F1,2:-0.454556744725;ZNF143:-0.460843485224;NR5A1,2:-0.469075584216;ALX4:-0.471460600413;HLF:-0.476047989634;RXRA_VDR{dimer}:-0.482898181988;BACH2:-0.482926857135;HAND1,2:-0.498916822595;HOXA9_MEIS1:-0.512258293217;NFE2L2:-0.523648707926;LHX3,4:-0.525557710383;HNF1A:-0.535739065671;CEBPA,B_DDIT3:-0.543750239098;DBP:-0.56549935808;FOS_FOS{B,L1}_JUN{B,D}:-0.570269107635;POU3F1..4:-0.598069422429;RREB1:-0.652136732747;NFE2:-0.654742405235;HES1:-0.65926320989;GFI1:-0.702735831887;TOPORS:-0.79397750731;MED-1{core}:-0.800087654691;SRF:-0.815210868264;PAX5:-0.816355064615;EGR1..3:-0.839758322942;GCM1,2:-0.851054331623;MEF2{A,B,C,D}:-0.855021336129;GLI1..3:-0.862886900366;NHLH1,2:-0.863471034905;ZBTB6:-0.912287515225;MZF1:-0.934473108211;TFAP4:-0.966992442558;ZNF148:-0.985919699157;GFI1B:-1.00107458617;SOX{8,9,10}:-1.01218307326;PRDM1:-1.01841648422;ZFP161:-1.0421685864;GATA4:-1.06135274684;HOX{A5,B5}:-1.08236564745;UFEwm:-1.08282022863;MYBL2:-1.08737625859;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.08893421276;REST:-1.0951654436;ARID5B:-1.09755333246;ADNP_IRX_SIX_ZHX:-1.117532627;NR1H4:-1.14748138426;SOX17:-1.1516807115;TFDP1:-1.18520958864;MTF1:-1.20676694543;MAZ:-1.22351570581;bHLH_family:-1.23728521585;ZIC1..3:-1.24267961594;ZNF238:-1.24443913868;ZNF423:-1.24694864533;NKX2-3_NKX2-5:-1.26683501392;PPARG:-1.27110205953;PATZ1:-1.30013425635;MTE{core}:-1.35549683503;HSF1,2:-1.38836910755;NR6A1:-1.39042046524;TP53:-1.53833384281;KLF4:-1.54124409426;GTF2I:-1.54649198672;POU5F1:-1.58307073359;ESRRA:-1.60713892373;HOX{A4,D4}:-1.63033756559;TFCP2:-1.63253257801;XBP1:-1.64397828309;TLX1..3_NFIC{dimer}:-1.67229619146;ONECUT1,2:-1.67381864193;TEAD1:-1.68313843257;CDC5L:-1.69794224958;NKX3-2:-1.76796038867;TFAP2B:-1.78291015937;GZF1:-1.80018349768;FOXL1:-1.81211297425;NR3C1:-1.81507531927;TEF:-1.83327888564;POU6F1:-1.87096392229;ESR1:-1.87406315173;HIC1:-1.8962502056;PAX1,9:-1.91005672482;GTF2A1,2:-1.93339510219;TBP:-1.97560760149;EBF1:-2.01519924901;TFAP2{A,C}:-2.10635984705;RXR{A,B,G}:-2.11064351634;EN1,2:-2.12068508441;XCPE1{core}:-2.15728993096;SP1:-2.16259514118;IKZF1:-2.87682411062
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11909-125G1;search_select_hide=table117:FF:11909-125G1
}}
}}

Latest revision as of 18:28, 4 June 2020

Name:CD4+CD25-CD45RA- memory conventional T cells, donor3
Species:Human (Homo sapiens)
Library ID:CNhs13539
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueblood
dev stageNA
sexmale
age23
cell typeT cell
cell lineNA
companyNA
collaborationMichael Rehli (University of Regensberg)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number39-40
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004886
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs13539 CAGE DRX008194 DRR009066
Accession ID Hg19

Library idBAMCTSS
CNhs13539 DRZ000491 DRZ001876
Accession ID Hg38

Library idBAMCTSS
CNhs13539 DRZ011841 DRZ013226
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0.515
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.131
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.194
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.239
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0.481
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40.0105
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.178
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0.401
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.681
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.475
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0.88
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.0351
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.098
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.00892
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0.245
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190.632
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.0526
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140.724
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0.548
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.0246
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.46
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0.624
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.245
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.697
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.178
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.75
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0.703
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.0687
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.751
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.549
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.529
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0.812
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0.0327
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0.515
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.934
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0.355
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340.178
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0.401
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13539

Jaspar motifP-value
MA0002.26.85667e-7
MA0003.10.47
MA0004.10.719
MA0006.10.135
MA0007.10.726
MA0009.10.0929
MA0014.10.993
MA0017.10.926
MA0018.23.47563e-6
MA0019.10.75
MA0024.10.725
MA0025.10.473
MA0027.10.859
MA0028.12.48867e-4
MA0029.10.149
MA0030.10.00465
MA0031.11.41627e-4
MA0035.20.226
MA0038.10.0377
MA0039.20.469
MA0040.10.623
MA0041.10.59
MA0042.10.739
MA0043.10.0377
MA0046.10.102
MA0047.20.0505
MA0048.10.756
MA0050.11.93587e-8
MA0051.10.00131
MA0052.10.00503
MA0055.10.693
MA0057.10.615
MA0058.10.711
MA0059.10.66
MA0060.10.0266
MA0061.10.00139
MA0062.22.87872e-15
MA0065.20.314
MA0066.10.212
MA0067.10.0285
MA0068.10.202
MA0069.10.903
MA0070.10.432
MA0071.10.699
MA0072.10.166
MA0073.10.942
MA0074.10.729
MA0076.13.72409e-6
MA0077.10.00719
MA0078.10.78
MA0079.20.327
MA0080.23.14537e-11
MA0081.10.0159
MA0083.10.0399
MA0084.10.358
MA0087.10.626
MA0088.10.397
MA0090.13.53184e-4
MA0091.10.652
MA0092.10.982
MA0093.10.597
MA0099.20.00285
MA0100.10.421
MA0101.10.286
MA0102.20.958
MA0103.10.346
MA0104.20.154
MA0105.12.4241e-6
MA0106.10.198
MA0107.10.403
MA0108.21.52826e-9
MA0111.10.3
MA0112.20.671
MA0113.10.65
MA0114.10.96
MA0115.10.454
MA0116.15.05178e-4
MA0117.10.0659
MA0119.10.672
MA0122.10.546
MA0124.10.406
MA0125.10.151
MA0131.10.139
MA0135.10.102
MA0136.11.27146e-22
MA0137.20.991
MA0138.20.292
MA0139.10.0437
MA0140.10.127
MA0141.10.326
MA0142.10.368
MA0143.10.35
MA0144.10.921
MA0145.10.194
MA0146.10.958
MA0147.10.114
MA0148.10.173
MA0149.10.242
MA0150.10.665
MA0152.10.0149
MA0153.10.219
MA0154.10.111
MA0155.10.271
MA0156.13.41286e-20
MA0157.10.00101
MA0159.10.427
MA0160.10.714
MA0162.10.635
MA0163.14.75593e-6
MA0164.10.966
MA0258.10.665
MA0259.10.262



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13539

Novel motifP-value
10.22
100.00832
1000.822
1010.137
1020.889
1030.295
1040.961
1050.551
1060.713
1070.0147
1080.597
1090.343
110.256
1100.939
1110.688
1120.638
1130.214
1140.431
1150.313
1160.333
1170.00446
1180.28
1190.588
120.829
1200.672
1210.873
1220.92
1230.0081
1240.64
1250.861
1260.474
1270.9
1280.733
1290.969
130.456
1300.335
1310.725
1320.269
1330.985
1340.62
1350.629
1360.758
1370.0397
1380.34
1390.044
140.601
1400.0945
1410.405
1420.644
1430.00272
1440.819
1450.684
1460.851
1470.0224
1480.0854
1490.468
150.112
1500.668
1510.751
1520.19
1530.49
1540.38
1550.0609
1560.982
1570.267
1580.00916
1590.617
160.743
1600.387
1610.874
1620.0826
1630.518
1640.0933
1650.212
1660.599
1670.133
1680.483
1690.461
170.67
180.984
190.162
20.494
200.449
210.766
220.422
230.58
240.766
250.0635
260.654
270.512
280.483
290.0109
30.169
300.12
310.742
320.0726
330.247
340.324
350.127
360.0374
370.28
380.828
390.247
40.773
400.836
410.212
420.0915
430.478
440.64
450.279
460.374
470.221
480.428
490.136
50.31
500.402
510.817
520.321
530.543
540.905
550.56
560.996
570.679
580.121
590.835
60.921
600.634
610.144
620.0972
630.898
640.507
650.701
660.56
670.971
680.896
690.813
70.303
700.0589
710.0372
720.1
730.972
740.514
750.0238
760.113
770.0272
780.594
790.958
80.917
800.0152
810.396
820.16
830.95
840.885
850.795
860.175
870.341
880.873
890.12
90.786
900.0211
910.526
920.477
930.371
940.146
950.266
960.174
970.39
980.22
998.87521e-5



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs13539


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

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