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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005602
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00013676
|accession_numbers=CAGE;DRX008171;DRR009043;DRZ000468;DRZ001853;DRZ011818;DRZ013203
|accession_numbers_RNASeq=sRNA-Seq;DRX012361;DRR013809;DRZ003010
|ancestors_in_anatomy_facet=
|ancestors_in_anatomy_facet=
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000542,CL:0000219,CL:0000945,CL:0000738,CL:0002087,CL:0002242,CL:0000255,CL:0000236
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000542,CL:0000219,CL:0000945,CL:0000738,CL:0002087,CL:0002242,CL:0000255,CL:0000236
Line 7: Line 11:
|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr16:85932760..85932775,+!p1@IRF8!2.64!431.62!IRF8;;chr11:111249993..111250006,-!p1@POU2AF1!2.37!233.13!POU2AF1;;chr6:391743..391759,+!p1@IRF4!2.36!227.85!IRF4;;chr2:100759010..100759035,-!p1@AFF3!2.35!224.32!AFF3;;chrX:106960180..106960197,-!p2@TSC22D3!2.29!696.46!TSC22D3;;chrX:106960221..106960236,-!p3@TSC22D3!2.28!498.56!TSC22D3;;chr19:50922187..50922204,+!p1@SPIB!2.21!162.66!SPIB;;chrX:106960249..106960260,-!p5@TSC22D3!2.16!221.98!TSC22D3;;chr2:157189180..157189290,-!p1@NR4A2!2.15!693.53!NR4A2;;chr6:91006518..91006570,-!p1@BACH2!2.15!311.82!BACH2;;chr2:100759037..100759058,-!p2@AFF3!2.05!110.40!AFF3;;chr19:54041669..54041697,+!p2@ZNF331!1.99!96.89!ZNF331;;chr6:91006575..91006602,-!p2@BACH2!1.97!135.65!BACH2;;chr9:37034186..37034216,-!p2@PAX5!1.97!92.20!PAX5;;chr3:71355163..71355209,-!p5@FOXP1!1.93!115.69!FOXP1;;chr2:231090433..231090469,+!p1@SP140!1.90!79.28!SP140;;chr17:38020392..38020477,-!p1@IKZF3!1.90!78.69!IKZF3;;chr11:47400078..47400106,-!p1@SPI1!1.86!71.64!SPI1;;chr19:54058073..54058088,+!p1@ZNF331!1.85!69.29!ZNF331;;chr2:231090471..231090504,+!p2@SP140!1.82!64.60!SP140;;chr19:36391434..36391450,-!p1@NFKBID!1.80!119.80!NFKBID;;chr1:25256756..25256774,-!p1@RUNX3!1.80!113.34!RUNX3;;chr2:68592406..68592424,+!p1@PLEK!1.78!59.31!PLEK;;chr19:45971246..45971265,+!p1@FOSB!1.76!996.54!FOSB;;chr2:60780607..60780624,-!p2@BCL11A!1.75!162.66!BCL11A;;chr9:102584262..102584276,+!p1@NR4A3!1.72!111.58!NR4A3;;chr20:56195474..56195506,-!p1@ZBP1!1.69!48.15!ZBP1;;chr9:37034258..37034270,-!p3@PAX5!1.67!45.80!PAX5;;chr2:61108695..61108753,+!p1@REL!1.66!294.79!REL;;chr2:157189617..157189667,-!p4@NR4A2!1.66!45.22!NR4A2;;chr2:60781201..60781258,-!p3@BCL11A!1.64!42.87!BCL11A;;chr5:88120151..88120177,-!p6@MEF2C!1.63!41.69!MEF2C;;chr20:50159198..50159299,-!p1@NFATC2!1.61!56.96!NFATC2;;chr14:69262947..69262986,-!p3@ZFP36L1!1.61!47.57!ZFP36L1;;chr19:54041645..54041661,+!p5@ZNF331!1.59!38.17!ZNF331;;chr5:158526756..158526797,-!p3@EBF1!1.59!38.17!EBF1;;chr5:131826457..131826514,-!p1@IRF1!1.58!1358.28!IRF1;;chr2:100758991..100759009,-!p3@AFF3!1.57!35.82!AFF3;;chr1:10754477..10754517,-!p1@CASZ1!1.56!57.55!CASZ1;;chr7:50343634..50343717,+!p2@IKZF1!1.55!34.65!IKZF1;;chr5:88178983..88179012,-!p1@MEF2C!1.54!250.75!MEF2C;;chr5:142782823..142782854,-!p3@NR3C1!1.54!46.98!NR3C1;;chr14:75745523..75745537,+!p1@FOS!1.53!3738.35!FOS;;chr19:36204309..36204335,+!p1@ZBTB32!1.53!32.89!ZBTB32;;chr19:16435625..16435682,+!p1@KLF2!1.52!973.05!KLF2;;chr8:123793988..123794016,+!p1@ZHX2!1.52!55.20!ZHX2;;chr7:50344289..50344323,+!p1@IKZF1!1.52!32.30!IKZF1;;chrX:106960285..106960299,-!p1@TSC22D3!1.50!778.68!TSC22D3;;chr6:91006503..91006517,-!p3@BACH2!1.50!30.54!BACH2;;chr4:103422499..103422632,+!p1@NFKB1!1.47!569.03!NFKB1;;chr14:64971288..64971316,-!p2@ZBTB25!1.47!85.15!ZBTB25;;chr3:32023232..32023273,+!p1@ZNF860!1.46!39.34!ZNF860;;chr14:35873947..35873965,-!p1@NFKBIA!1.45!1621.36!NFKBIA;;chr8:81397820..81397836,+!p2@ZBTB10!1.44!32.89!ZBTB10;;chr7:64126535..64126559,+!p2@ZNF107!1.43!54.03!ZNF107;;chr3:71631151..71631194,-!p15@FOXP1!1.43!28.77!FOXP1;;chr3:18486354..18486377,-!p2@SATB1!1.42!31.12!SATB1;;chr7:50344251..50344288,+!p3@IKZF1!1.42!25.25!IKZF1;;chr17:38020557..38020572,-!p4@IKZF3!1.42!25.25!IKZF3;;chr9:102584241..102584261,+!p4@NR4A3!1.41!38.17!NR4A3;;chr8:81397846..81397860,+!p3@ZBTB10!1.41!30.54!ZBTB10;;chr19:42636586..42636607,-!p1@POU2F2!1.40!64.60!POU2F2;;chr17:38497662..38497713,+!p4@RARA!1.40!27.60!RARA;;chr14:69262916..69262929,-!p11@ZFP36L1!1.40!24.08!ZFP36L1;;chr9:37034147..37034157,-!p7@PAX5!1.40!24.08!PAX5;;chr10:104155480..104155534,+!p2@NFKB2!1.39!146.81!NFKB2;;chr12:72056800..72056834,+!p1@THAP2!1.39!31.71!THAP2;;chr10:3827371..3827386,-!p2@KLF6!1.37!184.39!KLF6;;chr19:45252008..45252024,+!p2@BCL3!1.37!72.82!BCL3;;chr18:77155922..77155939,+!p1@NFATC1!1.37!59.90!NFATC1;;chr9:3525727..3525828,-!p2@RFX3!1.37!56.37!RFX3;;chr9:102584128..102584144,+!p3@NR4A3!1.37!42.28!NR4A3;;chr3:18487057..18487105,-!p4@SATB1!1.37!22.32!SATB1;;chr9:102584159..102584174,+!p2@NR4A3!1.35!38.17!NR4A3;;chr19:12721790..12721810,+!p2@ZNF791!1.34!56.37!ZNF791;;chr6:157098579..157098634,+!p4@ARID1B!1.34!46.39!ARID1B;;chr13:41593425..41593480,-!p1@ELF1!1.33!125.67!ELF1;;chr1:14075903..14075940,+!p1@PRDM2!1.32!409.89!PRDM2;;chr6:44233252..44233296,-!p1@NFKBIE!1.32!189.09!NFKBIE;;chr3:39195075..39195088,-!p1@CSRNP1!1.32!122.73!CSRNP1;;chr19:13213662..13213686,-!p1@LYL1!1.31!28.19!LYL1;;chr10:35484053..35484076,+!p1@CREM!1.30!46.98!CREM;;chr5:158526693..158526706,-!p8@EBF1!1.30!18.79!EBF1;;chr8:102218439..102218455,-!p3@ZNF706!1.28!18.20!ZNF706;;chr12:52445218..52445237,+!p1@NR4A1!1.27!217.86!NR4A1;;chrX:101186981..101187030,-!p1@ZMAT1!1.27!56.37!ZMAT1;;chr17:38020516..38020544,-!p5@IKZF3!1.27!17.62!IKZF3;;chr2:97202480..97202499,+!p1@ARID5A!1.26!171.47!ARID5A;;chr10:104154246..104154347,+!p3@NFKB2!1.26!103.35!NFKB2;;chr19:58220517..58220583,-!p1@ZNF154!1.26!54.03!ZNF154;;chr9:37034469..37034474,-!p1@PAX5!1.26!17.03!PAX5;;chr19:1290228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|expression_enrichment_score=chr16:85932760..85932775,+!p1@IRF8!2.64!431.62!IRF8;;chr11:111249993..111250006,-!p1@POU2AF1!2.37!233.13!POU2AF1;;chr6:391743..391759,+!p1@IRF4!2.36!227.85!IRF4;;chr2:100759010..100759035,-!p1@AFF3!2.35!224.32!AFF3;;chrX:106960180..106960197,-!p2@TSC22D3!2.29!696.46!TSC22D3;;chrX:106960221..106960236,-!p3@TSC22D3!2.28!498.56!TSC22D3;;chr19:50922187..50922204,+!p1@SPIB!2.21!162.66!SPIB;;chrX:106960249..106960260,-!p5@TSC22D3!2.16!221.98!TSC22D3;;chr2:157189180..157189290,-!p1@NR4A2!2.15!693.53!NR4A2;;chr6:91006518..91006570,-!p1@BACH2!2.15!311.82!BACH2;;chr2:100759037..100759058,-!p2@AFF3!2.05!110.40!AFF3;;chr19:54041669..54041697,+!p2@ZNF331!1.99!96.89!ZNF331;;chr6:91006575..91006602,-!p2@BACH2!1.97!135.65!BACH2;;chr9:37034186..37034216,-!p2@PAX5!1.97!92.20!PAX5;;chr3:71355163..71355209,-!p5@FOXP1!1.93!115.69!FOXP1;;chr2:231090433..231090469,+!p1@SP140!1.90!79.28!SP140;;chr17:38020392..38020477,-!p1@IKZF3!1.90!78.69!IKZF3;;chr11:47400078..47400106,-!p1@SPI1!1.86!71.64!SPI1;;chr19:54058073..54058088,+!p1@ZNF331!1.85!69.29!ZNF331;;chr2:231090471..231090504,+!p2@SP140!1.82!64.60!SP140;;chr19:36391434..36391450,-!p1@NFKBID!1.80!119.80!NFKBID;;chr1:25256756..25256774,-!p1@RUNX3!1.80!113.34!RUNX3;;chr2:68592406..68592424,+!p1@PLEK!1.78!59.31!PLEK;;chr19:45971246..45971265,+!p1@FOSB!1.76!996.54!FOSB;;chr2:60780607..60780624,-!p2@BCL11A!1.75!162.66!BCL11A;;chr9:102584262..102584276,+!p1@NR4A3!1.72!111.58!NR4A3;;chr20:56195474..56195506,-!p1@ZBP1!1.69!48.15!ZBP1;;chr9:37034258..37034270,-!p3@PAX5!1.67!45.80!PAX5;;chr2:61108695..61108753,+!p1@REL!1.66!294.79!REL;;chr2:157189617..157189667,-!p4@NR4A2!1.66!45.22!NR4A2;;chr2:60781201..60781258,-!p3@BCL11A!1.64!42.87!BCL11A;;chr5:88120151..88120177,-!p6@MEF2C!1.63!41.69!MEF2C;;chr20:50159198..50159299,-!p1@NFATC2!1.61!56.96!NFATC2;;chr14:69262947..69262986,-!p3@ZFP36L1!1.61!47.57!ZFP36L1;;chr19:54041645..54041661,+!p5@ZNF331!1.59!38.17!ZNF331;;chr5:158526756..158526797,-!p3@EBF1!1.59!38.17!EBF1;;chr5:131826457..131826514,-!p1@IRF1!1.58!1358.28!IRF1;;chr2:100758991..100759009,-!p3@AFF3!1.57!35.82!AFF3;;chr1:10754477..10754517,-!p1@CASZ1!1.56!57.55!CASZ1;;chr7:50343634..50343717,+!p2@IKZF1!1.55!34.65!IKZF1;;chr5:88178983..88179012,-!p1@MEF2C!1.54!250.75!MEF2C;;chr5:142782823..142782854,-!p3@NR3C1!1.54!46.98!NR3C1;;chr14:75745523..75745537,+!p1@FOS!1.53!3738.35!FOS;;chr19:36204309..36204335,+!p1@ZBTB32!1.53!32.89!ZBTB32;;chr19:16435625..16435682,+!p1@KLF2!1.52!973.05!KLF2;;chr8:123793988..123794016,+!p1@ZHX2!1.52!55.20!ZHX2;;chr7:50344289..50344323,+!p1@IKZF1!1.52!32.30!IKZF1;;chrX:106960285..106960299,-!p1@TSC22D3!1.50!778.68!TSC22D3;;chr6:91006503..91006517,-!p3@BACH2!1.50!30.54!BACH2;;chr4:103422499..103422632,+!p1@NFKB1!1.47!569.03!NFKB1;;chr14:64971288..64971316,-!p2@ZBTB25!1.47!85.15!ZBTB25;;chr3:32023232..32023273,+!p1@ZNF860!1.46!39.34!ZNF860;;chr14:35873947..35873965,-!p1@NFKBIA!1.45!1621.36!NFKBIA;;chr8:81397820..81397836,+!p2@ZBTB10!1.44!32.89!ZBTB10;;chr7:64126535..64126559,+!p2@ZNF107!1.43!54.03!ZNF107;;chr3:71631151..71631194,-!p15@FOXP1!1.43!28.77!FOXP1;;chr3:18486354..18486377,-!p2@SATB1!1.42!31.12!SATB1;;chr7:50344251..50344288,+!p3@IKZF1!1.42!25.25!IKZF1;;chr17:38020557..38020572,-!p4@IKZF3!1.42!25.25!IKZF3;;chr9:102584241..102584261,+!p4@NR4A3!1.41!38.17!NR4A3;;chr8:81397846..81397860,+!p3@ZBTB10!1.41!30.54!ZBTB10;;chr19:42636586..42636607,-!p1@POU2F2!1.40!64.60!POU2F2;;chr17:38497662..38497713,+!p4@RARA!1.40!27.60!RARA;;chr14:69262916..69262929,-!p11@ZFP36L1!1.40!24.08!ZFP36L1;;chr9:37034147..37034157,-!p7@PAX5!1.40!24.08!PAX5;;chr10:104155480..104155534,+!p2@NFKB2!1.39!146.81!NFKB2;;chr12:72056800..72056834,+!p1@THAP2!1.39!31.71!THAP2;;chr10:3827371..3827386,-!p2@KLF6!1.37!184.39!KLF6;;chr19:45252008..45252024,+!p2@BCL3!1.37!72.82!BCL3;;chr18:77155922..77155939,+!p1@NFATC1!1.37!59.90!NFATC1;;chr9:3525727..3525828,-!p2@RFX3!1.37!56.37!RFX3;;chr9:102584128..102584144,+!p3@NR4A3!1.37!42.28!NR4A3;;chr3:18487057..18487105,-!p4@SATB1!1.37!22.32!SATB1;;chr9:102584159..102584174,+!p2@NR4A3!1.35!38.17!NR4A3;;chr19:12721790..12721810,+!p2@ZNF791!1.34!56.37!ZNF791;;chr6:157098579..157098634,+!p4@ARID1B!1.34!46.39!ARID1B;;chr13:41593425..41593480,-!p1@ELF1!1.33!125.67!ELF1;;chr1:14075903..14075940,+!p1@PRDM2!1.32!409.89!PRDM2;;chr6:44233252..44233296,-!p1@NFKBIE!1.32!189.09!NFKBIE;;chr3:39195075..39195088,-!p1@CSRNP1!1.32!122.73!CSRNP1;;chr19:13213662..13213686,-!p1@LYL1!1.31!28.19!LYL1;;chr10:35484053..35484076,+!p1@CREM!1.30!46.98!CREM;;chr5:158526693..158526706,-!p8@EBF1!1.30!18.79!EBF1;;chr8:102218439..102218455,-!p3@ZNF706!1.28!18.20!ZNF706;;chr12:52445218..52445237,+!p1@NR4A1!1.27!217.86!NR4A1;;chrX:101186981..101187030,-!p1@ZMAT1!1.27!56.37!ZMAT1;;chr17:38020516..38020544,-!p5@IKZF3!1.27!17.62!IKZF3;;chr2:97202480..97202499,+!p1@ARID5A!1.26!171.47!ARID5A;;chr10:104154246..104154347,+!p3@NFKB2!1.26!103.35!NFKB2;;chr19:58220517..58220583,-!p1@ZNF154!1.26!54.03!ZNF154;;chr9:37034469..37034474,-!p1@PAX5!1.26!17.03!PAX5;;chr19:1290228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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000236;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000542;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988
|ffid_belonging_in_development=CL:0000134,CL:0000051
|ffid_belonging_in_development=CL:0000134,CL:0000051
|fonse_cell_line=
|fonse_cell_line=
Line 38: Line 44:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD19%252b%2520B%2520Cells%252c%2520donor2.CNhs12352.11624-122B4.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD19%252b%2520B%2520Cells%252c%2520donor2.CNhs12352.11624-122B4.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD19%252b%2520B%2520Cells%252c%2520donor2.CNhs12352.11624-122B4.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD19%252b%2520B%2520Cells%252c%2520donor2.CNhs12352.11624-122B4.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD19%252b%2520B%2520Cells%252c%2520donor2.CNhs12352.11624-122B4.hg38.nobarcode.ctss.bed.gz
|id=FF:11624-122B4
|id=FF:11624-122B4
|is_a=EFO:0002091;;FF:0000025;;FF:0000210
|is_a=EFO:0002091;;FF:0000025;;FF:0000210
|is_obsolete=
|is_obsolete=
|library_id=CNhs12352!SRhi10066.GGCTAC
|library_id_phase_based=2:CNhs12352
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11624
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10066.GGCTAC.11624
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11624
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10066.GGCTAC.11624
|name=CD19+ B Cells, donor2
|name=CD19+ B Cells, donor2
|namespace=FANTOM5
|namespace=FANTOM5
Line 46: Line 65:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs12352,LSID913,release011,COMPLETED
|profile_hcage=CNhs12352,LSID913,release011,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 62: Line 82:
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|sample_category=primary cells
Line 85: Line 106:
|top_motifs=ATF4:3.23283949205;POU2F1..3:2.88353028991;AIRE:2.87577538106;CREB1:2.65532701163;NFKB1_REL_RELA:2.58165705204;ATF5_CREB3:2.36051284609;DMAP1_NCOR{1,2}_SMARC:2.33062630557;PAX3,7:2.26676617525;FOXN1:2.25210896726;RFX2..5_RFXANK_RFXAP:2.24926162339;FOX{D1,D2}:2.22759333717;POU5F1:2.21706298027;BPTF:1.88969737372;ZBTB16:1.78224190622;HIF1A:1.7501505427;FOXP1:1.74293730653;SPI1:1.67711162242;HMX1:1.6308151795;FOX{F1,F2,J1}:1.62563705387;FOXO1,3,4:1.60750330807;FOX{I1,J2}:1.57049480219;NKX6-1,2:1.54412855212;PAX2:1.53931066436;RUNX1..3:1.4148904388;IRF1,2:1.35893084525;TLX2:1.34495907266;ELF1,2,4:1.29890027285;ATF2:1.28090525034;SPIB:1.27893198221;ETS1,2:1.17618240956;JUN:1.1531563749;CDX1,2,4:1.03564756153;PAX6:0.96779983251;PITX1..3:0.909017824041;TGIF1:0.849206941163;NKX2-1,4:0.849093876032;RFX1:0.790846469474;FOXA2:0.776809223294;BREu{core}:0.73035597817;MAFB:0.683934219507;SREBF1,2:0.646726999025;NANOG{mouse}:0.631697198207;RXRA_VDR{dimer}:0.615212203228;EGR1..3:0.603577344052;NFIL3:0.592874120968;IKZF2:0.579724212194;PDX1:0.54338090201;ZEB1:0.522405957936;PAX4:0.495090418651;HBP1_HMGB_SSRP1_UBTF:0.47081380665;LMO2:0.469125843789;FOXL1:0.443467159867;STAT5{A,B}:0.434006117713;TOPORS:0.410757804847;CRX:0.405709694707;OCT4_SOX2{dimer}:0.399922782141;ALX1:0.362865421422;NKX3-1:0.351333433789;MYOD1:0.307508691114;MYB:0.29357885169;FOSL2:0.290131785934;HOXA9_MEIS1:0.287488521501;FOXP3:0.265110646334;SMAD1..7,9:0.261242170223;TBX4,5:0.24985132554;RORA:0.248316705556;MEF2{A,B,C,D}:0.232881092643;IRF7:0.22536489279;ATF6:0.175174672106;LEF1_TCF7_TCF7L1,2:0.162660994421;ESR1:0.101946134911;ZFP161:0.0718263155598;SNAI1..3:0.0701485864482;EVI1:0.0621080932311;FOS_FOS{B,L1}_JUN{B,D}:0.0515363725975;AHR_ARNT_ARNT2:0.0460517541027;SOX5:0.0298606145912;PBX1:0.00849782976664;EP300:-0.0109817155149;GLI1..3:-0.0320205532445;NKX2-2,8:-0.0531480689182;ZNF384:-0.0673217118027;bHLH_family:-0.076192490753;T:-0.100622385623;NHLH1,2:-0.116157582797;BACH2:-0.120454667247;FOXQ1:-0.134962839979;MYFfamily:-0.155473021266;NR5A1,2:-0.159933188008;CEBPA,B_DDIT3:-0.171866222998;HMGA1,2:-0.176441557108;NANOG:-0.235858919122;SOX{8,9,10}:-0.262519611343;HNF4A_NR2F1,2:-0.268519727265;GATA6:-0.270978334725;CDC5L:-0.277771689539;MED-1{core}:-0.287964950152;RXR{A,B,G}:-0.301115463971;E2F1..5:-0.325591606159;TEF:-0.326695917153;NFATC1..3:-0.332482622079;HES1:-0.336804355368;RREB1:-0.35837611318;EBF1:-0.3656132642;HLF:-0.395724953215;ELK1,4_GABP{A,B1}:-0.407212224536;NFE2:-0.40854875138;SOX2:-0.450287246801;CUX2:-0.45282862456;POU6F1:-0.453900262732;MTE{core}:-0.4869694425;TFCP2:-0.487231034811;ALX4:-0.494053848774;TAL1_TCF{3,4,12}:-0.511460124744;POU1F1:-0.512860291548;NR6A1:-0.528155065757;DBP:-0.540406095739;TFAP2{A,C}:-0.547368570795;POU3F1..4:-0.552784740818;PPARG:-0.565367458446;NFIX:-0.577995083368;HOX{A6,A7,B6,B7}:-0.58419240633;NFE2L1:-0.599207691189;VSX1,2:-0.623037736372;PRRX1,2:-0.638229016558;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.681103207485;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.690339410558;YY1:-0.695150127888;FOXD3:-0.698517827163;STAT2,4,6:-0.700395456965;HNF1A:-0.732338617605;SRF:-0.764683412743;TFDP1:-0.790194340543;HOX{A5,B5}:-0.794389301755;TFAP2B:-0.798436647731;REST:-0.819650712367;MZF1:-0.832985295696;HAND1,2:-0.837742335479;TBP:-0.840247799593;NFY{A,B,C}:-0.859475795884;GATA4:-0.862176943071;TFAP4:-0.886758072342;SPZ1:-0.906306821424;RBPJ:-0.916150256476;ZNF148:-0.929291525489;PATZ1:-0.93632832331;STAT1,3:-0.93953780971;NRF1:-0.948345317761;SOX17:-0.955428735223;MTF1:-0.974827725275;TP53:-0.983455984629;PAX8:-0.987295326244;ADNP_IRX_SIX_ZHX:-0.992544770023;ONECUT1,2:-1.01871470125;HIC1:-1.04415287028;NKX3-2:-1.04877750755;HSF1,2:-1.05024557812;PRDM1:-1.08101893946;UFEwm:-1.0842263637;NKX2-3_NKX2-5:-1.09932933985;XCPE1{core}:-1.11508527902;ZNF423:-1.15725613849;EN1,2:-1.16775117418;MAZ:-1.18705707472;LHX3,4:-1.18939277367;GCM1,2:-1.20279321128;AR:-1.24678173908;NFE2L2:-1.27032329965;ZNF143:-1.27237558508;SP1:-1.29913230326;MYBL2:-1.37601253404;HOX{A4,D4}:-1.39777813466;ARID5B:-1.39859838776;FOXM1:-1.40419805106;GFI1:-1.45168873694;GFI1B:-1.50624362536;NR1H4:-1.5264528395;ZNF238:-1.53547244729;GZF1:-1.55799060867;ZIC1..3:-1.64372618372;GTF2A1,2:-1.66643776661;PAX5:-1.67425508795;IKZF1:-1.72099897191;TEAD1:-1.77991357277;XBP1:-1.81632862519;GTF2I:-1.91675876388;ESRRA:-2.05318018263;ZBTB6:-2.15762214243;TLX1..3_NFIC{dimer}:-2.17198934753;KLF4:-2.2922187068;NR3C1:-2.43476394293;PAX1,9:-2.48063482814
|top_motifs=ATF4:3.23283949205;POU2F1..3:2.88353028991;AIRE:2.87577538106;CREB1:2.65532701163;NFKB1_REL_RELA:2.58165705204;ATF5_CREB3:2.36051284609;DMAP1_NCOR{1,2}_SMARC:2.33062630557;PAX3,7:2.26676617525;FOXN1:2.25210896726;RFX2..5_RFXANK_RFXAP:2.24926162339;FOX{D1,D2}:2.22759333717;POU5F1:2.21706298027;BPTF:1.88969737372;ZBTB16:1.78224190622;HIF1A:1.7501505427;FOXP1:1.74293730653;SPI1:1.67711162242;HMX1:1.6308151795;FOX{F1,F2,J1}:1.62563705387;FOXO1,3,4:1.60750330807;FOX{I1,J2}:1.57049480219;NKX6-1,2:1.54412855212;PAX2:1.53931066436;RUNX1..3:1.4148904388;IRF1,2:1.35893084525;TLX2:1.34495907266;ELF1,2,4:1.29890027285;ATF2:1.28090525034;SPIB:1.27893198221;ETS1,2:1.17618240956;JUN:1.1531563749;CDX1,2,4:1.03564756153;PAX6:0.96779983251;PITX1..3:0.909017824041;TGIF1:0.849206941163;NKX2-1,4:0.849093876032;RFX1:0.790846469474;FOXA2:0.776809223294;BREu{core}:0.73035597817;MAFB:0.683934219507;SREBF1,2:0.646726999025;NANOG{mouse}:0.631697198207;RXRA_VDR{dimer}:0.615212203228;EGR1..3:0.603577344052;NFIL3:0.592874120968;IKZF2:0.579724212194;PDX1:0.54338090201;ZEB1:0.522405957936;PAX4:0.495090418651;HBP1_HMGB_SSRP1_UBTF:0.47081380665;LMO2:0.469125843789;FOXL1:0.443467159867;STAT5{A,B}:0.434006117713;TOPORS:0.410757804847;CRX:0.405709694707;OCT4_SOX2{dimer}:0.399922782141;ALX1:0.362865421422;NKX3-1:0.351333433789;MYOD1:0.307508691114;MYB:0.29357885169;FOSL2:0.290131785934;HOXA9_MEIS1:0.287488521501;FOXP3:0.265110646334;SMAD1..7,9:0.261242170223;TBX4,5:0.24985132554;RORA:0.248316705556;MEF2{A,B,C,D}:0.232881092643;IRF7:0.22536489279;ATF6:0.175174672106;LEF1_TCF7_TCF7L1,2:0.162660994421;ESR1:0.101946134911;ZFP161:0.0718263155598;SNAI1..3:0.0701485864482;EVI1:0.0621080932311;FOS_FOS{B,L1}_JUN{B,D}:0.0515363725975;AHR_ARNT_ARNT2:0.0460517541027;SOX5:0.0298606145912;PBX1:0.00849782976664;EP300:-0.0109817155149;GLI1..3:-0.0320205532445;NKX2-2,8:-0.0531480689182;ZNF384:-0.0673217118027;bHLH_family:-0.076192490753;T:-0.100622385623;NHLH1,2:-0.116157582797;BACH2:-0.120454667247;FOXQ1:-0.134962839979;MYFfamily:-0.155473021266;NR5A1,2:-0.159933188008;CEBPA,B_DDIT3:-0.171866222998;HMGA1,2:-0.176441557108;NANOG:-0.235858919122;SOX{8,9,10}:-0.262519611343;HNF4A_NR2F1,2:-0.268519727265;GATA6:-0.270978334725;CDC5L:-0.277771689539;MED-1{core}:-0.287964950152;RXR{A,B,G}:-0.301115463971;E2F1..5:-0.325591606159;TEF:-0.326695917153;NFATC1..3:-0.332482622079;HES1:-0.336804355368;RREB1:-0.35837611318;EBF1:-0.3656132642;HLF:-0.395724953215;ELK1,4_GABP{A,B1}:-0.407212224536;NFE2:-0.40854875138;SOX2:-0.450287246801;CUX2:-0.45282862456;POU6F1:-0.453900262732;MTE{core}:-0.4869694425;TFCP2:-0.487231034811;ALX4:-0.494053848774;TAL1_TCF{3,4,12}:-0.511460124744;POU1F1:-0.512860291548;NR6A1:-0.528155065757;DBP:-0.540406095739;TFAP2{A,C}:-0.547368570795;POU3F1..4:-0.552784740818;PPARG:-0.565367458446;NFIX:-0.577995083368;HOX{A6,A7,B6,B7}:-0.58419240633;NFE2L1:-0.599207691189;VSX1,2:-0.623037736372;PRRX1,2:-0.638229016558;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.681103207485;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.690339410558;YY1:-0.695150127888;FOXD3:-0.698517827163;STAT2,4,6:-0.700395456965;HNF1A:-0.732338617605;SRF:-0.764683412743;TFDP1:-0.790194340543;HOX{A5,B5}:-0.794389301755;TFAP2B:-0.798436647731;REST:-0.819650712367;MZF1:-0.832985295696;HAND1,2:-0.837742335479;TBP:-0.840247799593;NFY{A,B,C}:-0.859475795884;GATA4:-0.862176943071;TFAP4:-0.886758072342;SPZ1:-0.906306821424;RBPJ:-0.916150256476;ZNF148:-0.929291525489;PATZ1:-0.93632832331;STAT1,3:-0.93953780971;NRF1:-0.948345317761;SOX17:-0.955428735223;MTF1:-0.974827725275;TP53:-0.983455984629;PAX8:-0.987295326244;ADNP_IRX_SIX_ZHX:-0.992544770023;ONECUT1,2:-1.01871470125;HIC1:-1.04415287028;NKX3-2:-1.04877750755;HSF1,2:-1.05024557812;PRDM1:-1.08101893946;UFEwm:-1.0842263637;NKX2-3_NKX2-5:-1.09932933985;XCPE1{core}:-1.11508527902;ZNF423:-1.15725613849;EN1,2:-1.16775117418;MAZ:-1.18705707472;LHX3,4:-1.18939277367;GCM1,2:-1.20279321128;AR:-1.24678173908;NFE2L2:-1.27032329965;ZNF143:-1.27237558508;SP1:-1.29913230326;MYBL2:-1.37601253404;HOX{A4,D4}:-1.39777813466;ARID5B:-1.39859838776;FOXM1:-1.40419805106;GFI1:-1.45168873694;GFI1B:-1.50624362536;NR1H4:-1.5264528395;ZNF238:-1.53547244729;GZF1:-1.55799060867;ZIC1..3:-1.64372618372;GTF2A1,2:-1.66643776661;PAX5:-1.67425508795;IKZF1:-1.72099897191;TEAD1:-1.77991357277;XBP1:-1.81632862519;GTF2I:-1.91675876388;ESRRA:-2.05318018263;ZBTB6:-2.15762214243;TLX1..3_NFIC{dimer}:-2.17198934753;KLF4:-2.2922187068;NR3C1:-2.43476394293;PAX1,9:-2.48063482814
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11624-122B4;search_select_hide=table117:FF:11624-122B4
}}
}}

Latest revision as of 18:12, 4 June 2020

Name:CD19+ B Cells, donor2
Species:Human (Homo sapiens)
Library ID:CNhs12352,SRhi10066.GGCTAC
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueblood
dev stageNA
sexNA
ageNA
cell typeb cell
cell lineNA
company3HBiomedical
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog number3H100-500-10
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005602
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12352 CAGE DRX008171 DRR009043
Accession ID Hg19

Library idBAMCTSS
CNhs12352 DRZ000468 DRZ001853
Accession ID Hg38

Library idBAMCTSS
CNhs12352 DRZ011818 DRZ013203
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00013676
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10066.GGCTAC sRNA-Seq DRX012361 DRR013809
Accession ID Hg19

Library idBAMCTSS
SRhi10066.GGCTAC DRZ003010


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.245
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.441
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0.837
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40.184
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.441
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0.441
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.612
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.577
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil1.063
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.275
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.906
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40.201
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.243
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0.525
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary1.054
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190.337
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.236
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.201
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.0976
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.453
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.655
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0.201
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.595
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.337
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.0114
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0.595
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.14
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.719
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.486
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.558
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0.0135
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0.337
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0.201
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0.873
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.709
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0.441
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12352

Jaspar motifP-value
MA0002.20.0011
MA0003.10.693
MA0004.10.477
MA0006.10.179
MA0007.10.446
MA0009.10.22
MA0014.10.858
MA0017.10.773
MA0018.21.02908e-9
MA0019.10.556
MA0024.10.636
MA0025.10.214
MA0027.10.83
MA0028.10.767
MA0029.10.285
MA0030.10.00845
MA0031.10.0171
MA0035.20.922
MA0038.10.0463
MA0039.20.389
MA0040.10.527
MA0041.10.161
MA0042.10.707
MA0043.15.09512e-5
MA0046.10.144
MA0047.20.567
MA0048.10.819
MA0050.15.41809e-9
MA0051.10.00169
MA0052.10.174
MA0055.10.89
MA0057.10.203
MA0058.10.38
MA0059.10.696
MA0060.14.64828e-4
MA0061.11.59651e-21
MA0062.21.59816e-4
MA0065.20.503
MA0066.10.447
MA0067.17.00939e-4
MA0068.10.269
MA0069.10.67
MA0070.10.155
MA0071.10.985
MA0072.10.886
MA0073.10.567
MA0074.10.999
MA0076.10.505
MA0077.10.252
MA0078.10.967
MA0079.20.628
MA0080.28.11542e-12
MA0081.13.86031e-4
MA0083.10.0828
MA0084.10.801
MA0087.10.37
MA0088.10.143
MA0090.14.39753e-5
MA0091.10.627
MA0092.10.971
MA0093.10.63
MA0099.20.896
MA0100.10.665
MA0101.11.29945e-19
MA0102.20.00152
MA0103.10.165
MA0104.20.106
MA0105.11.10355e-15
MA0106.10.189
MA0107.11.2612e-19
MA0108.20.00155
MA0111.10.38
MA0112.20.482
MA0113.10.182
MA0114.10.763
MA0115.10.426
MA0116.10.00331
MA0117.10.0313
MA0119.10.354
MA0122.10.932
MA0124.10.97
MA0125.10.119
MA0131.10.1
MA0135.10.0742
MA0136.12.37049e-13
MA0137.20.0167
MA0138.20.0911
MA0139.10.701
MA0140.10.946
MA0141.10.386
MA0142.10.668
MA0143.10.672
MA0144.10.0969
MA0145.10.0609
MA0146.10.479
MA0147.10.157
MA0148.10.519
MA0149.10.439
MA0150.10.137
MA0152.10.0666
MA0153.10.0117
MA0154.10.00219
MA0155.10.476
MA0156.11.46389e-5
MA0157.10.0448
MA0159.10.148
MA0160.10.79
MA0162.10.347
MA0163.14.69227e-4
MA0164.10.256
MA0258.10.184
MA0259.10.598



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12352

Novel motifP-value
10.389
100.00751
1000.578
1010.41
1020.958
1030.871
1040.631
1050.754
1060.0108
1070.425
1080.343
1090.885
110.442
1100.823
1110.13
1120.599
1130.0466
1140.555
1150.868
1160.38
1170.00207
1180.199
1190.918
120.475
1200.321
1210.26
1220.616
1231.43183e-4
1240.973
1250.371
1260.404
1270.787
1280.887
1290.278
130.501
1300.0459
1310.526
1320.0724
1330.011
1340.656
1350.0636
1360.652
1370.00888
1380.511
1390.278
140.461
1400.326
1410.189
1420.722
1430.44
1440.787
1450.894
1460.658
1470.134
1480.102
1490.866
150.335
1500.561
1510.828
1520.83
1530.469
1540.28
1550.0334
1560.687
1570.587
1580.00505
1590.308
160.467
1600.597
1610.711
1620.171
1630.291
1640.0531
1650.697
1660.595
1670.105
1680.662
1690.711
170.915
180.685
190.224
20.259
200.153
210.859
220.426
230.812
240.795
250.0923
260.346
270.648
280.482
290.104
30.431
300.0832
310.83
320.0141
330.443
340.561
350.118
360.0457
370.255
380.79
390.603
40.865
400.484
410.0612
420.404
430.179
440.965
450.403
460.401
470.549
480.784
490.0765
50.828
500.795
510.721
520.755
530.396
540.998
550.747
560.769
570.757
580.0629
590.948
60.802
600.305
610.0969
620.106
631
640.652
650.937
660.171
670.895
680.445
690.598
70.39
700.173
710.0638
720.256
730.51
740.813
750.0166
760.0157
770.0397
780.628
790.609
80.79
800.196
810.289
820.213
830.441
840.0292
850.212
860.0378
870.574
880.701
890.0318
90.93
900.121
910.0744
920.665
930.98
940.143
950.157
960.804
970.548
980.12
991.28154e-5



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12352


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000542 (lymphocyte)
0000219 (motile cell)
0000945 (lymphocyte of B lineage)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0002242 (nucleate cell)
0000255 (eukaryotic cell)
0000236 (B cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000025 (CD19-positive B cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
CL:0000051 (common lymphoid progenitor)

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