FFCP PHASE1:Hg19::chr2:28853443..28853454,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr2:28853443..28853454,+
|short_description=p8@PLB1
|description=CAGE_peak_8_at_PLB1_5end
|association_with_transcript=0bp_to_ENST00000436775_5end
|EntrezGene...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=151056 | |EntrezGene=151056 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30041 | |HGNC=30041 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000436775_5end | |||
|cluster_id=chr2:28853443..28853454,+ | |||
|coexpression_cluster_id=C68 | |||
|description=CAGE_peak_8_at_PLB1_5end | |||
|id=chr2:28853443..28853454,+ | |||
|ontology_enrichment_celltype=CL:0000039!1.03e-12!7;CL:0000586!1.03e-12!7;CL:0002536!2.55e-09!2;CL:0000317!3.80e-09!2;CL:1000448!3.80e-09!2;CL:0002308!3.80e-09!2;CL:0002140!3.80e-09!2 | |||
|ontology_enrichment_celltype_v019=CL:0000349;2.38e-24;19!CL:0002537;1.28e-23;5!CL:0002536;1.66e-15;2!CL:1000507;3.15e-12;10!CL:1000494;3.15e-12;10!CL:0002541;7.42e-11;3!CL:0002681;2.34e-10;12!CL:0002584;2.34e-10;12!CL:1000449;1.78e-08;15!CL:1000497;1.38e-07;17!CL:0002518;1.38e-07;17 | |||
|ontology_enrichment_celltype_v019_2=CL:0000349,2.60e-24,19;CL:0002537,1.44e-23,5;CL:0002536,1.78e-15,2;CL:1000507,2.98e-12,10;CL:1000494,2.98e-12,10;CL:0002541,7.42e-11,3;CL:0002681,2.24e-10,12;CL:0002584,2.24e-10,12;CL:1000449,1.71e-08,15;CL:1000497,1.33e-07,17;CL:0002518,1.33e-07,17 | |||
|ontology_enrichment_development_v019=UBERON:0000358;1.54e-29;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005631!2.67e-13!14;UBERON:0000158!2.67e-13!14;UBERON:0000305!1.04e-09!7;UBERON:0000478!1.51e-09!24;UBERON:0002419!3.80e-09!2;UBERON:0007771!3.80e-09!2;UBERON:0003297!3.80e-09!2;UBERON:0001821!3.80e-09!2;UBERON:0003487!3.80e-09!2;UBERON:0001820!3.80e-09!2;UBERON:0005089!3.80e-09!2;UBERON:0005088!3.80e-09!2;UBERON:0004871!1.72e-08!8 | |||
|ontology_enrichment_uberon_v019=UBERON:0005631;1.33e-45;10!UBERON:0000158;1.33e-45;10!UBERON:0000305;5.92e-37;7!UBERON:0000478;8.62e-30;24!UBERON:0004211;3.15e-12;10!UBERON:0009773;3.15e-12;10!UBERON:0001231;3.15e-12;10!UBERON:0004810;3.15e-12;10!UBERON:0003124;7.42e-11;3!UBERON:0000920;7.42e-11;3!UBERON:0001225;2.34e-10;12!UBERON:0008987;2.34e-10;12!UBERON:0001851;1.78e-08;15!UBERON:0006555;1.78e-08;15!UBERON:0000353;1.78e-08;15!UBERON:0004819;1.78e-08;15!UBERON:0001285;1.78e-08;15!UBERON:0007684;1.78e-08;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000305,7.12e-37,7;UBERON:0005631,9.65e-33,14;UBERON:0000158,9.65e-33,14;UBERON:0004871,2.19e-32,8;UBERON:0000478,9.15e-30,24;UBERON:0004810,2.98e-12,10;UBERON:0000920,7.42e-11,3;UBERON:0001225,2.24e-10,12;UBERON:0008987,2.24e-10,12;UBERON:0001851,1.71e-08,15;UBERON:0004211,1.71e-08,15;UBERON:0009773,1.71e-08,15;UBERON:0000353,1.71e-08,15;UBERON:0001231,1.71e-08,15;UBERON:0001285,1.71e-08,15;UBERON:0007684,1.71e-08,15;UBERON:0004208,1.71e-08,15;UBERON:0006555,5.09e-08,16;UBERON:0004819,5.09e-08,16;UBERON:0004923,2.33e-07,66 | |||
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| ||
|short_description=p8@PLB1 | |||
}} | }} |
Latest revision as of 19:40, 16 September 2015
Short description: | p8@PLB1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_PLB1_5end |
Coexpression cluster: | C68_amniotic_chorionic_Placental_salivary_placenta_tongue_mesothelioma |
Association with transcript: | 0bp_to_ENST00000436775_5end |
EntrezGene: | PLB1 |
HGNC: | 30041 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 2.60e-24 | 19 |
amnion mesenchymal stem cell | 1.44e-23 | 5 |
amniotic epithelial cell | 1.78e-15 | 2 |
kidney tubule cell | 2.98e-12 | 10 |
nephron tubule epithelial cell | 2.98e-12 | 10 |
chorionic membrane mesenchymal stem cell | 7.42e-11 | 3 |
kidney cortical cell | 2.24e-10 | 12 |
renal cortical epithelial cell | 2.24e-10 | 12 |
epithelial cell of nephron | 1.71e-08 | 15 |
kidney cell | 1.33e-07 | 17 |
kidney epithelial cell | 1.33e-07 | 17 |
Ontology term | p-value | n |
---|---|---|
amnion | 7.12e-37 | 7 |
extraembryonic membrane | 9.65e-33 | 14 |
membranous layer | 9.65e-33 | 14 |
somatic layer of lateral plate mesoderm | 2.19e-32 | 8 |
extraembryonic structure | 9.15e-30 | 24 |
nephron tubule epithelium | 2.98e-12 | 10 |
egg chorion | 7.42e-11 | 3 |
cortex of kidney | 2.24e-10 | 12 |
renal parenchyma | 2.24e-10 | 12 |
cortex | 1.71e-08 | 15 |
nephron epithelium | 1.71e-08 | 15 |
renal tubule | 1.71e-08 | 15 |
parenchyma | 1.71e-08 | 15 |
nephron tubule | 1.71e-08 | 15 |
nephron | 1.71e-08 | 15 |
uriniferous tubule | 1.71e-08 | 15 |
nephrogenic mesenchyme | 1.71e-08 | 15 |
excretory tube | 5.09e-08 | 16 |
kidney epithelium | 5.09e-08 | 16 |
organ component layer | 2.33e-07 | 66 |