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MCL coexpression mm9:2671: Difference between revisions

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{{MCL_coexpression_mm9
{{MCL_coexpression_mm9|coexpression_dpi_cluster_scores_mean=0,0,0,0,0,0,0,0.0175804594622066,0.096220145829576,0.0304459561748514,0.0228792421628914,0,0,0,0,0.0266920508443725,0,0.0396927872161003,0.0997551107599313,0,0.0345550213698982,0.0137042176982799,0,0.0214850507912259,0.0546670935592277,0,0,0,0,0,0.0289918065944652,0,0,0,0,0,0,0.0880413706713313,0,0.060949742349986,0,0,0,0,0,0,0,0,0,0,0,0,0.064342366846497,0,0.0744283327268513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0167275966277777,0,0,0,0.0173962347031493,0,0,0,0,0,0,0,0,0,0,0,0,0,0.089870634893658,0,0,0,0,0.035837147293275,0,0,0,0,0,0,0,0,0,0,0.042643666384499,0.799674873747976,0.0376337418065127,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0597465923636,0,0,0.0173169925063769,0,0,0,0,0,0,0,0,0.032165912785898,0,0.05085284525757,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0220051525142016,0.0112844458274858,0,0,0.0182307002463379,0,0,0,0,0,0,0,0,0,0,0.056217778832401,0,0.0324578881582755,0,0.0515699022673389,0,0,0.0262901170742449,0,0,0,0,0,0,0,0.0199314599765119,0,0.031931605944455,0,0,0,0,0,0,0,0,0,0.0702405108397867,0.241781197341816,0.169861658283927,0.09564356845716,0.032601694661079,0,0,0.0455213533034023,0,0,0,0,0.0224197389723651,0,0,0.105327298893788,0.0530816920388087,0.040071669581354,0.0659019793256198,0.10293373789018,0.0367844494796637,0,0,0.09914615167441,0.0352763816885367,0,0.0160451566633019,0,0.0325892178866794,0,0,0,0,0,0,0,0,0,0,0.0513549267122737,0,0,0.041277376202236,0,0,0,0.0250125273252447,0.037457000059879,0,0,0,0.0441396529218,0.0397560065439497,0,0,0,0,0,0,0,0,0,0,0.0305171655333305,0,0,0.0441890133992274,0,0,0.0163248575732391,0,0.0370293221228937,0,0.249461474396399,0,0.0639644502941917,0.0925673047802473,0.063142560209948,0.148606562479155,0,0,0.0187395237590185,0,0,0,0,0,0,0,0.0221467740893117,0,0.0176434801378522,0,0,0,0,0,0,0,0,0,0,0,0,0.663984576882171,0.0267221387019274,0.0768726751328878,0.08108551324003,0.225925016482471,0.255275470429422,0.330747294268698,0.332010272814082,0.377964772445147,0.354646775823842,0.423926011416397,0.372509953261644,0.510651846148777,0.531551163382781,0,0,0,0,0,0.0646573852282253,0,0.0281168167036011,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.00808462453527963,0,0,0.02553579847638,0,0,0,0,0,0,0.0130202471667864,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0,0.0572052190895671,0,0,0,0,0,0,0,0,0,0.149632666139897,0,0.0354470656487682,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0673620022139481,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.858206792018496,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0773548534010084,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10536076625968,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0635717028550276,0,0,0.0659019793256198,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0662835200988411,0,0,0,0,0,0,0.374192211594598,0,0,0.138850957170371,0,0.163625352771192,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.619104940152946,0,0.0811390825906054,0.10031596050676,0.132916844396872,0.145309149361067,0.318430460435056,0.393907644105234,0.465139243436776,0.415030627594552,0.433617067742141,0.273492251357903,0.589542496654884,0.59349901348568,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|gostat_on_MCL_coexpression=GO:0042102;positive regulation of T cell proliferation;7.15561495875796e-05;58205,16160!GO:0032946;positive regulation of mononuclear cell proliferation;7.15561495875796e-05;58205,16160!GO:0050671;positive regulation of lymphocyte proliferation;7.15561495875796e-05;58205,16160!GO:0042129;regulation of T cell proliferation;7.15561495875796e-05;58205,16160!GO:0050870;positive regulation of T cell activation;7.15561495875796e-05;58205,16160!GO:0032944;regulation of mononuclear cell proliferation;7.35471221882306e-05;58205,16160!GO:0050670;regulation of lymphocyte proliferation;7.35471221882306e-05;58205,16160!GO:0042098;T cell proliferation;7.35471221882306e-05;58205,16160!GO:0051251;positive regulation of lymphocyte activation;7.73804873447081e-05;58205,16160!GO:0050863;regulation of T cell activation;7.73804873447081e-05;58205,16160!GO:0032943;mononuclear cell proliferation;8.9181044682564e-05;58205,16160!GO:0046651;lymphocyte proliferation;8.9181044682564e-05;58205,16160!GO:0051249;regulation of lymphocyte activation;0.000103440012158916;58205,16160!GO:0050865;regulation of cell activation;0.000103440012158916;58205,16160!GO:0042110;T cell activation;0.000182337431008882;58205,16160!GO:0008284;positive regulation of cell proliferation;0.000381355448383418;58205,16160!GO:0046649;lymphocyte activation;0.000401760441206012;58205,16160!GO:0042164;interleukin-12 alpha subunit binding;0.000401760441206012;16160!GO:0045321;leukocyte activation;0.00044031826617175;58205,16160!GO:0001775;cell activation;0.000481597451958488;58205,16160!GO:0019972;interleukin-12 binding;0.000657408166816525;16160!GO:0043514;interleukin-12 complex;0.000657408166816525;16160!GO:0051239;regulation of multicellular organismal process;0.000663278546769362;58205,16160!GO:0042127;regulation of cell proliferation;0.000826864458343372;58205,16160!GO:0008283;cell proliferation;0.00168772667236566;58205,16160!GO:0042130;negative regulation of T cell proliferation;0.00365253616668558;58205!GO:0002376;immune system process;0.00365253616668558;58205,16160!GO:0048522;positive regulation of cellular process;0.00365253616668558;58205,16160!GO:0050868;negative regulation of T cell activation;0.00429169744975049;58205!GO:0048518;positive regulation of biological process;0.00429169744975049;58205,16160!GO:0050672;negative regulation of lymphocyte proliferation;0.00429169744975049;58205!GO:0032945;negative regulation of mononuclear cell proliferation;0.00429169744975049;58205!GO:0051250;negative regulation of lymphocyte activation;0.00547494953051047;58205!GO:0019965;interleukin binding;0.00764973974782912;16160!GO:0004896;hematopoietin/interferon-class (D200-domain) cytokine receptor activity;0.0111412619257483;16160!GO:0019955;cytokine binding;0.0134346406708379;16160!GO:0042803;protein homodimerization activity;0.0196864757885286;16160!GO:0008285;negative regulation of cell proliferation;0.0223843188330641;58205!GO:0042802;identical protein binding;0.0317441951522043;16160!GO:0046983;protein dimerization activity;0.0356036715371746;16160!GO:0004872;receptor activity;0.0366321694933641;58205,16160!GO:0005125;cytokine activity;0.0366321694933641;16160!GO:0060089;molecular transducer activity;0.0399967575331794;58205,16160!GO:0004871;signal transducer activity;0.0399967575331794;58205,16160!GO:0050794;regulation of cellular process;0.0433918005514947;58205,16160!|ontology_enrichment_celltype=|ontology_enrichment_disease=|ontology_enrichment_uberon=UBERON:0004177!2.05e-32!29;UBERON:0005057!2.05e-32!29;UBERON:0002370!6.88e-28!23;UBERON:0000974!6.88e-28!23;UBERON:0004807!6.88e-28!23;UBERON:0005058!6.88e-28!23;UBERON:0003351!6.88e-28!23;UBERON:0009113!6.88e-28!23;UBERON:0003295!6.88e-28!23;UBERON:0009722!6.88e-28!23;UBERON:0005562!6.88e-28!23;UBERON:0007690!6.88e-28!23;UBERON:0006562!1.30e-26!24;UBERON:0003408!1.30e-26!24;UBERON:0001557!1.30e-26!24;UBERON:0001042!1.30e-26!24;UBERON:0008814!1.30e-26!24;UBERON:0009145!1.30e-26!24;UBERON:0000077!2.71e-26!35;UBERON:0002193!1.86e-23!48;UBERON:0002405!1.86e-23!48;UBERON:0000072!2.36e-23!27;UBERON:0002390!2.59e-22!45;UBERON:0003061!2.59e-22!45;UBERON:0000065!5.83e-19!41;UBERON:0001004!1.96e-18!42;UBERON:0000063!2.17e-17!35;UBERON:0007811!7.86e-17!36;UBERON:0001041!6.80e-14!80;UBERON:0000153!1.21e-13!43;UBERON:0003929!1.08e-11!55;UBERON:0005911!1.84e-11!69;UBERON:0002368!1.79e-10!60;UBERON:0003081!7.79e-10!87;UBERON:0004921!1.05e-09!114;UBERON:0001007!1.81e-09!116;UBERON:0001555!1.81e-09!116;UBERON:0007026!1.81e-09!116;UBERON:0002530!1.93e-09!65;UBERON:0000064!2.09e-09!99;UBERON:0000490!2.98e-09!66;UBERON:0004119!3.07e-09!118;UBERON:0000925!3.07e-09!118;UBERON:0006595!3.07e-09!118;UBERON:0000949!3.09e-08!72;UBERON:0000475!2.34e-07!150;UBERON:0001048!9.90e-07!134|tfbs_overrepresentation_for_novel_motifs=0.752782,0.193418,0.722405,0.801166,0.587814,0.81763,0.919454,0.467321,0.479531,0.235304,0.870507,0.906098,0.467629,0.933025,0.608226,0,1.14208,0.578045,0.448066,0.328717,0.679146,0.275782,0.932027,1.43154,0.731217,0.963352,0.437236,0.841386,0.64294,0.380786,0.825437,1.24901,1.40911,0.411696,0.608816,0.872889,0.563758,0.902078,0.536514,0.50014,0.582863,0.831295,0.724277,0.610669,0.156582,0.788421,1.05665,0.859154,0.663409,0.646474,1.12346,0.99279,0.371606,1.3966,1.41464,0.940919,0.657156,0.891887,0.425455,0.938668,1.22795,1.00308,0.494668,1.11142,0.953187,1.15459,1.55483,1.90983,1.22303,1.7608,0.700291,0.474956,0.284975,1.44925,0.416814,0.402065,1.05896,1.04436,1.20986,0.684144,0.476502,1.16055,1.00151,0.459035,1.32978,0.181575,0.195254,0.380977,1.06194,2.07346,1.62608,1.33496,1.26245,0.595071,0.531443,1.26911,1.17262,1.26539,1.05692,0.352122,0.563856,1.24872,1.37854,1.12409,1.12297,0.830796,1.18646,0.854628,0.689894,0.681267,0.744607,1.38039,0.685481,0.876299,1.63327,0.580657,0.212464,0.805461,1.14346,0.559153,1.45481,1.08896,2.21546,1.04338,1.68841,1.21376,0.928483,1.25534,1.55328,0.598722,1.36093,0.792832,1.52297,0.955954,1.65529,0.273451,0.762499,0.832891,1.60513,2.44352,2.04137,1.55966,2.24236,1.26,1.11604,0.831808,1.06002,2.40374,0.765221,0.589976,0.38417,0.260379,1.39822,0.516739,0.954936,1.48249,0.993889,0.622823,0.749933,0.762177,1.61484,1.32889,1.21423,0.741984,1.11251,0.94678,0.562367,0.904334,0.135528|tfbs_overrepresentation_jaspar=MA0003.1;0.0699972,MA0004.1;0.801718,MA0006.1;0.60285,MA0007.1;0.784593,MA0009.1;1.27673,MA0014.1;0.133574,MA0017.1;0.635031,MA0019.1;1.08369,MA0024.1;1.23079,MA0025.1;1.51835,MA0027.1;2.9431,MA0028.1;1.49373,MA0029.1;1.20789,MA0030.1;1.21482,MA0031.1;1.17722,MA0038.1;0.963265,MA0040.1;1.28983,MA0041.1;0.714279,MA0042.1;0.69885,MA0043.1;1.3775,MA0046.1;1.31428,MA0048.1;0.353763,MA0050.1;0.845669,MA0051.1;0.973068,MA0052.1;1.29825,MA0055.1;1.06076,MA0056.1;0,MA0057.1;0.337566,MA0058.1;1.65098,MA0059.1;1.68104,MA0060.1;0.502699,MA0061.1;1.33581,MA0063.1;0,MA0066.1;0.951196,MA0067.1;1.63197,MA0068.1;0.908538,MA0069.1;1.29861,MA0070.1;1.28847,MA0071.1;0.844726,MA0072.1;1.2796,MA0073.1;0.00834468,MA0074.1;0.911576,MA0076.1;0.657929,MA0077.1;1.2569,MA0078.1;1.0091,MA0081.1;0.732313,MA0083.1;1.37668,MA0084.1;1.96428,MA0087.1;1.33189,MA0088.1;0.27999,MA0089.1;0,MA0090.1;0.762482,MA0091.1;0.816659,MA0092.1;0.762845,MA0093.1;1.51475,MA0095.1;0,MA0098.1;0,MA0100.1;0.89873,MA0101.1;0.71579,MA0103.1;0.647985,MA0105.1;1.84392,MA0106.1;1.01755,MA0107.1;0.640607,MA0108.2;1.10817,MA0109.1;0,MA0111.1;0.778753,MA0113.1;0.986839,MA0114.1;0.537669,MA0115.1;1.38041,MA0116.1;0.602598,MA0117.1;1.34691,MA0119.1;0.716476,MA0122.1;1.36752,MA0124.1;1.57762,MA0125.1;1.5017,MA0130.1;0,MA0131.1;1.07881,MA0132.1;0,MA0133.1;0,MA0135.1;1.4152,MA0136.1;0.933582,MA0139.1;0.462282,MA0140.1;0.898603,MA0141.1;0.671467,MA0142.1;1.16183,MA0143.1;1.00467,MA0144.1;2.29766,MA0145.1;0.794492,MA0146.1;0.151124,MA0147.1;0.556853,MA0148.1;0.820161,MA0149.1;0.722227,MA0062.2;0.412742,MA0035.2;0.903829,MA0039.2;0.181475,MA0138.2;1.07027,MA0002.2;0.466067,MA0137.2;0.668025,MA0104.2;0.48458,MA0047.2;0.962424,MA0112.2;0.29236,MA0065.2;0.292912,MA0150.1;0.784464,MA0151.1;0,MA0152.1;0.962542,MA0153.1;1.43238,MA0154.1;0.925147,MA0155.1;0.312898,MA0156.1;0.656895,MA0157.1;2.5454,MA0158.1;0,MA0159.1;0.569393,MA0160.1;0.823568,MA0161.1;0,MA0162.1;0.166722,MA0163.1;0.927936,MA0164.1;0.933981,MA0080.2;0.64167,MA0018.2;0.944669,MA0099.2;1.06348,MA0079.2;0.0332569,MA0102.2;2.01714,MA0258.1;0.520639,MA0259.1;0.543506,MA0442.1;0}}
|coexpression_dpi_cluster_scores_mean=0,0,0,0,0,0,0,0.0175804594622066,0.096220145829576,0.0304459561748514,0.0228792421628914,0,0,0,0,0.0266920508443725,0,0.0396927872161003,0.0997551107599313,0,0.0345550213698982,0.0137042176982799,0,0.0214850507912259,0.0546670935592277,0,0,0,0,0,0.0289918065944652,0,0,0,0,0,0,0.0880413706713313,0,0.060949742349986,0,0,0,0,0,0,0,0,0,0,0,0,0.064342366846497,0,0.0744283327268513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0167275966277777,0,0,0,0.0173962347031493,0,0,0,0,0,0,0,0,0,0,0,0,0,0.089870634893658,0,0,0,0,0.035837147293275,0,0,0,0,0,0,0,0,0,0,0.042643666384499,0.799674873747976,0.0376337418065127,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0597465923636,0,0,0.0173169925063769,0,0,0,0,0,0,0,0,0.032165912785898,0,0.05085284525757,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0220051525142016,0.0112844458274858,0,0,0.0182307002463379,0,0,0,0,0,0,0,0,0,0,0.056217778832401,0,0.0324578881582755,0,0.0515699022673389,0,0,0.0262901170742449,0,0,0,0,0,0,0,0.0199314599765119,0,0.031931605944455,0,0,0,0,0,0,0,0,0,0.0702405108397867,0.241781197341816,0.169861658283927,0.09564356845716,0.032601694661079,0,0,0.0455213533034023,0,0,0,0,0.0224197389723651,0,0,0.105327298893788,0.0530816920388087,0.040071669581354,0.0659019793256198,0.10293373789018,0.0367844494796637,0,0,0.09914615167441,0.0352763816885367,0,0.0160451566633019,0,0.0325892178866794,0,0,0,0,0,0,0,0,0,0,0.0513549267122737,0,0,0.041277376202236,0,0,0,0.0250125273252447,0.037457000059879,0,0,0,0.0441396529218,0.0397560065439497,0,0,0,0,0,0,0,0,0,0,0.0305171655333305,0,0,0.0441890133992274,0,0,0.0163248575732391,0,0.0370293221228937,0,0.249461474396399,0,0.0639644502941917,0.0925673047802473,0.063142560209948,0.148606562479155,0,0,0.0187395237590185,0,0,0,0,0,0,0,0.0221467740893117,0,0.0176434801378522,0,0,0,0,0,0,0,0,0,0,0,0,0.663984576882171,0.0267221387019274,0.0768726751328878,0.08108551324003,0.225925016482471,0.255275470429422,0.330747294268698,0.332010272814082,0.377964772445147,0.354646775823842,0.423926011416397,0.372509953261644,0.510651846148777,0.531551163382781,0,0,0,0,0,0.0646573852282253,0,0.0281168167036011,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.00808462453527963,0,0,0.02553579847638,0,0,0,0,0,0,0.0130202471667864,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
|gostat_on_MCL_coexpression=GO:0042102;positive regulation of T cell proliferation;7.15561495875796e-05;58205,16160!GO:0032946;positive regulation of mononuclear cell proliferation;7.15561495875796e-05;58205,16160!GO:0050671;positive regulation of lymphocyte proliferation;7.15561495875796e-05;58205,16160!GO:0042129;regulation of T cell proliferation;7.15561495875796e-05;58205,16160!GO:0050870;positive regulation of T cell activation;7.15561495875796e-05;58205,16160!GO:0032944;regulation of mononuclear cell proliferation;7.35471221882306e-05;58205,16160!GO:0050670;regulation of lymphocyte proliferation;7.35471221882306e-05;58205,16160!GO:0042098;T cell proliferation;7.35471221882306e-05;58205,16160!GO:0051251;positive regulation of lymphocyte activation;7.73804873447081e-05;58205,16160!GO:0050863;regulation of T cell activation;7.73804873447081e-05;58205,16160!GO:0032943;mononuclear cell proliferation;8.9181044682564e-05;58205,16160!GO:0046651;lymphocyte proliferation;8.9181044682564e-05;58205,16160!GO:0051249;regulation of lymphocyte activation;0.000103440012158916;58205,16160!GO:0050865;regulation of cell activation;0.000103440012158916;58205,16160!GO:0042110;T cell activation;0.000182337431008882;58205,16160!GO:0008284;positive regulation of cell proliferation;0.000381355448383418;58205,16160!GO:0046649;lymphocyte activation;0.000401760441206012;58205,16160!GO:0042164;interleukin-12 alpha subunit binding;0.000401760441206012;16160!GO:0045321;leukocyte activation;0.00044031826617175;58205,16160!GO:0001775;cell activation;0.000481597451958488;58205,16160!GO:0019972;interleukin-12 binding;0.000657408166816525;16160!GO:0043514;interleukin-12 complex;0.000657408166816525;16160!GO:0051239;regulation of multicellular organismal process;0.000663278546769362;58205,16160!GO:0042127;regulation of cell proliferation;0.000826864458343372;58205,16160!GO:0008283;cell proliferation;0.00168772667236566;58205,16160!GO:0042130;negative regulation of T cell proliferation;0.00365253616668558;58205!GO:0002376;immune system process;0.00365253616668558;58205,16160!GO:0048522;positive regulation of cellular process;0.00365253616668558;58205,16160!GO:0050868;negative regulation of T cell activation;0.00429169744975049;58205!GO:0048518;positive regulation of biological process;0.00429169744975049;58205,16160!GO:0050672;negative regulation of lymphocyte proliferation;0.00429169744975049;58205!GO:0032945;negative regulation of mononuclear cell proliferation;0.00429169744975049;58205!GO:0051250;negative regulation of lymphocyte activation;0.00547494953051047;58205!GO:0019965;interleukin binding;0.00764973974782912;16160!GO:0004896;hematopoietin/interferon-class (D200-domain) cytokine receptor activity;0.0111412619257483;16160!GO:0019955;cytokine binding;0.0134346406708379;16160!GO:0042803;protein homodimerization activity;0.0196864757885286;16160!GO:0008285;negative regulation of cell proliferation;0.0223843188330641;58205!GO:0042802;identical protein binding;0.0317441951522043;16160!GO:0046983;protein dimerization activity;0.0356036715371746;16160!GO:0004872;receptor activity;0.0366321694933641;58205,16160!GO:0005125;cytokine activity;0.0366321694933641;16160!GO:0060089;molecular transducer activity;0.0399967575331794;58205,16160!GO:0004871;signal transducer activity;0.0399967575331794;58205,16160!GO:0050794;regulation of cellular process;0.0433918005514947;58205,16160!
}}

Latest revision as of 18:54, 17 September 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr11:44213562..44213568,+p1@Il12b
Mm9::chr19:29485468..29485471,+p1@Pdcd1lg2
Mm9::chr4:132528250..132528258,+p@chr4:132528250..132528258
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0042102positive regulation of T cell proliferation7.15561495875796e-05
GO:0032946positive regulation of mononuclear cell proliferation7.15561495875796e-05
GO:0050671positive regulation of lymphocyte proliferation7.15561495875796e-05
GO:0042129regulation of T cell proliferation7.15561495875796e-05
GO:0050870positive regulation of T cell activation7.15561495875796e-05
GO:0032944regulation of mononuclear cell proliferation7.35471221882306e-05
GO:0050670regulation of lymphocyte proliferation7.35471221882306e-05
GO:0042098T cell proliferation7.35471221882306e-05
GO:0051251positive regulation of lymphocyte activation7.73804873447081e-05
GO:0050863regulation of T cell activation7.73804873447081e-05
GO:0032943mononuclear cell proliferation8.9181044682564e-05
GO:0046651lymphocyte proliferation8.9181044682564e-05
GO:0051249regulation of lymphocyte activation0.000103440012158916
GO:0050865regulation of cell activation0.000103440012158916
GO:0042110T cell activation0.000182337431008882
GO:0008284positive regulation of cell proliferation0.000381355448383418
GO:0046649lymphocyte activation0.000401760441206012
GO:0042164interleukin-12 alpha subunit binding0.000401760441206012
GO:0045321leukocyte activation0.00044031826617175
GO:0001775cell activation0.000481597451958488
GO:0019972interleukin-12 binding0.000657408166816525
GO:0043514interleukin-12 complex0.000657408166816525
GO:0051239regulation of multicellular organismal process0.000663278546769362
GO:0042127regulation of cell proliferation0.000826864458343372
GO:0008283cell proliferation0.00168772667236566
GO:0042130negative regulation of T cell proliferation0.00365253616668558
GO:0002376immune system process0.00365253616668558
GO:0048522positive regulation of cellular process0.00365253616668558
GO:0050868negative regulation of T cell activation0.00429169744975049
GO:0048518positive regulation of biological process0.00429169744975049
GO:0050672negative regulation of lymphocyte proliferation0.00429169744975049
GO:0032945negative regulation of mononuclear cell proliferation0.00429169744975049
GO:0051250negative regulation of lymphocyte activation0.00547494953051047
GO:0019965interleukin binding0.00764973974782912
GO:0004896hematopoietin/interferon-class (D200-domain) cytokine receptor activity0.0111412619257483
GO:0019955cytokine binding0.0134346406708379
GO:0042803protein homodimerization activity0.0196864757885286
GO:0008285negative regulation of cell proliferation0.0223843188330641
GO:0042802identical protein binding0.0317441951522043
GO:0046983protein dimerization activity0.0356036715371746
GO:0004872receptor activity0.0366321694933641
GO:0005125cytokine activity0.0366321694933641
GO:0060089molecular transducer activity0.0399967575331794
GO:0004871signal transducer activity0.0399967575331794
GO:0050794regulation of cellular process0.0433918005514947



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
hemopoietic organ2.05e-3229
immune organ2.05e-3229
thymus6.88e-2823
neck6.88e-2823
respiratory system epithelium6.88e-2823
hemolymphoid system gland6.88e-2823
pharyngeal epithelium6.88e-2823
thymic region6.88e-2823
pharyngeal gland6.88e-2823
entire pharyngeal arch endoderm6.88e-2823
thymus primordium6.88e-2823
early pharyngeal endoderm6.88e-2823
pharynx1.30e-2624
gland of gut1.30e-2624
upper respiratory tract1.30e-2624
chordate pharynx1.30e-2624
pharyngeal arch system1.30e-2624
pharyngeal region of foregut1.30e-2624
mixed endoderm/mesoderm-derived structure2.71e-2635
hemolymphoid system1.86e-2348
immune system1.86e-2348
segment of respiratory tract2.36e-2327
hematopoietic system2.59e-2245
blood island2.59e-2245
respiratory tract5.83e-1941
respiratory system1.96e-1842
organ segment2.17e-1735
craniocervical region7.86e-1736
foregut6.80e-1480
anterior region of body1.21e-1343
gut epithelium1.08e-1155
endo-epithelium1.84e-1169
endocrine gland1.79e-1060
lateral plate mesoderm7.79e-1087
subdivision of digestive tract1.05e-09114
digestive system1.81e-09116
digestive tract1.81e-09116
primitive gut1.81e-09116
gland1.93e-0965
organ part2.09e-0999
unilaminar epithelium2.98e-0966
endoderm-derived structure3.07e-09118
endoderm3.07e-09118
presumptive endoderm3.07e-09118
endocrine system3.09e-0872
organism subdivision2.34e-07150
primordium9.90e-07134


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.10.0699972
MA0004.10.801718
MA0006.10.60285
MA0007.10.784593
MA0009.11.27673
MA0014.10.133574
MA0017.10.635031
MA0019.11.08369
MA0024.11.23079
MA0025.11.51835
MA0027.12.9431
MA0028.11.49373
MA0029.11.20789
MA0030.11.21482
MA0031.11.17722
MA0038.10.963265
MA0040.11.28983
MA0041.10.714279
MA0042.10.69885
MA0043.11.3775
MA0046.11.31428
MA0048.10.353763
MA0050.10.845669
MA0051.10.973068
MA0052.11.29825
MA0055.11.06076
MA0056.10
MA0057.10.337566
MA0058.11.65098
MA0059.11.68104
MA0060.10.502699
MA0061.11.33581
MA0063.10
MA0066.10.951196
MA0067.11.63197
MA0068.10.908538
MA0069.11.29861
MA0070.11.28847
MA0071.10.844726
MA0072.11.2796
MA0073.10.00834468
MA0074.10.911576
MA0076.10.657929
MA0077.11.2569
MA0078.11.0091
MA0081.10.732313
MA0083.11.37668
MA0084.11.96428
MA0087.11.33189
MA0088.10.27999
MA0089.10
MA0090.10.762482
MA0091.10.816659
MA0092.10.762845
MA0093.11.51475
MA0095.10
MA0098.10
MA0100.10.89873
MA0101.10.71579
MA0103.10.647985
MA0105.11.84392
MA0106.11.01755
MA0107.10.640607
MA0108.21.10817
MA0109.10
MA0111.10.778753
MA0113.10.986839
MA0114.10.537669
MA0115.11.38041
MA0116.10.602598
MA0117.11.34691
MA0119.10.716476
MA0122.11.36752
MA0124.11.57762
MA0125.11.5017
MA0130.10
MA0131.11.07881
MA0132.10
MA0133.10
MA0135.11.4152
MA0136.10.933582
MA0139.10.462282
MA0140.10.898603
MA0141.10.671467
MA0142.11.16183
MA0143.11.00467
MA0144.12.29766
MA0145.10.794492
MA0146.10.151124
MA0147.10.556853
MA0148.10.820161
MA0149.10.722227
MA0062.20.412742
MA0035.20.903829
MA0039.20.181475
MA0138.21.07027
MA0002.20.466067
MA0137.20.668025
MA0104.20.48458
MA0047.20.962424
MA0112.20.29236
MA0065.20.292912
MA0150.10.784464
MA0151.10
MA0152.10.962542
MA0153.11.43238
MA0154.10.925147
MA0155.10.312898
MA0156.10.656895
MA0157.12.5454
MA0158.10
MA0159.10.569393
MA0160.10.823568
MA0161.10
MA0162.10.166722
MA0163.10.927936
MA0164.10.933981
MA0080.20.64167
MA0018.20.944669
MA0099.21.06348
MA0079.20.0332569
MA0102.22.01714
MA0258.10.520639
MA0259.10.543506
MA0442.10
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