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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005223
|HumanCAGEScanFiles=NCig10026;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/thalamus%252c%2520adult%252c%2520donor10252.NCig10026.10154-103A1.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/thalamus%252c%2520adult%252c%2520donor10252.NCig10026.10154-103A1.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/thalamus%252c%2520adult%252c%2520donor10252.NCig10026.10154-103A1.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/thalamus%252c%2520adult%252c%2520donor10252.NCig10026.10154-103A1.hg19.GCTATA.pairs.bed.gz
|accession_numbers=CAGE;DRX008742;DRR009614;DRZ001039;DRZ002424;DRZ012389;DRZ013774
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0001897,UBERON:0001894,UBERON:0000479,UBERON:0004121,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002616,UBERON:0002780,UBERON:0002784,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0001890,UBERON:0010225
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0001897,UBERON:0001894,UBERON:0000479,UBERON:0004121,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002616,UBERON:0002780,UBERON:0002784,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0001890,UBERON:0010225
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr7:100065686..100065701,-!p2@TSC22D4!2.75!556.68!TSC22D4;;chr22:38380543..38380569,-!p1@SOX10!2.55!355.81!SOX10;;chr21:34442439..34442455,+!p1@OLIG1!2.53!339.26!OLIG1;;chr11:61520075..61520136,+!p1@C11orf9!2.32!420.46!C11orf9;;chr8:53322304..53322340,-!p1@ST18!2.19!154.84!ST18;;chr2:145277882..145277967,-!p3@ZEB2!1.99!161.56!ZEB2;;chr3:181429704..181429722,+!p1@SOX2!1.99!97.64!SOX2;;chr10:134599649..134599653,-!p1@NKX6-2!1.97!93.19!NKX6-2;;chr16:1031762..1031781,+!p1@SOX8!1.96!90.30!SOX8;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.96!89.37!PEG3;;chr21:34398234..34398250,+!p1@OLIG2!1.93!83.99!OLIG2;;chr8:53322347..53322378,-!p2@ST18!1.90!77.78!ST18;;chr12:26277817..26277863,-!p2@BHLHE41!1.89!101.47!BHLHE41;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.82!65.47!POU3F3;;chr12:26277956..26277980,-!p1@BHLHE41!1.79!210.38!BHLHE41;;chr21:34442540..34442560,+!p2@OLIG1!1.74!53.37!OLIG1;;chr10:48355030..48355090,+!p1@ZNF488!1.68!59.99!ZNF488;;chr12:106976678..106976708,+!p2@RFX4!1.64!42.92!RFX4;;chr19:46801639..46801699,+!p1@HIF3A!1.63!41.79!HIF3A;;chr11:113930425..113930471,+!p1@ZBTB16!1.61!56.78!ZBTB16;;chr9:114287433..114287513,+!p1@ZNF483!1.58!92.99!ZNF483;;chr3:126076242..126076257,-!p1@KLF15!1.58!45.92!KLF15;;chr16:85932760..85932775,+!p1@IRF8!1.54!34.03!IRF8;;chr1:214161272..214161322,+!p1@PROX1!1.53!46.13!PROX1;;chr12:54779511..54779577,-!p5@ZNF385A!1.53!33.10!ZNF385A;;chr11:47400078..47400106,-!p1@SPI1!1.51!31.34!SPI1;;chr2:95963052..95963106,+!p1@KCNIP3!1.47!28.34!KCNIP3;;chr15:80696703..80696754,+!p1@ARNT2!1.46!36.72!ARNT2;;chr4:81118647..81118666,+!p1@PRDM8!1.45!35.79!PRDM8;;chr19:13135386..13135435,+!p4@NFIX!1.45!27.10!NFIX;;chr9:77112244..77112262,+!p1@RORB!1.44!29.37!RORB;;chr3:181429741..181429767,+!p2@SOX2!1.42!25.13!SOX2;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.40!24.00!POU3F3;;chr15:80735246..80735321,+!p3@ARNT2!1.39!23.58!ARNT2;;chr11:31832862..31832884,-!p2@PAX6!1.38!23.17!PAX6;;chr19:30863271..30863338,+!p1@ZNF536!1.38!22.86!ZNF536;;chr17:53342311..53342400,+!p1@HLF!1.36!25.34!HLF;;chr7:63505799..63505904,+!p1@ZNF727!1.35!21.31!ZNF727;;chr12:106976774..106976788,+!p1@RFX4!1.33!20.48!RFX4;;chr6:19837592..19837621,+!p1@ID4!1.32!119.78!ID4;;chr1:61548069..61548102,+!p3@NFIA!1.32!47.58!NFIA;;chr10:64134120..64134183,+!p1@ZNF365!1.32!24.10!ZNF365;;chr14:33408072..33408114,+!p2@NPAS3!1.31!22.76!NPAS3;;chr19:46800289..46800327,+!p2@HIF3A!1.31!19.34!HIF3A;;chr14:29235961..29236008,+!p1@FOXG1!1.30!19.03!FOXG1;;chr14:33403881..33403924,+!p1@NPAS3!1.30!18.93!NPAS3;;chr14:29234581..29234601,+!p2@FOXG1!1.30!18.82!FOXG1;;chr22:41763452..41763466,+!p2@TEF!1.29!18.31!TEF;;chr2:214016314..214016343,-!p2@IKZF2!1.26!28.96!IKZF2;;chr12:26277929..26277955,-!p3@BHLHE41!1.26!24.41!BHLHE41;;chr16:51185172..51185197,-!p1@SALL1!1.26!17.07!SALL1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.25!16.96!ZBED1;;chr2:95963120..95963136,+!p2@KCNIP3!1.25!16.76!KCNIP3;;chr17:38219209..38219230,+!p1@THRA!1.24!209.14!THRA;;chr2:166326200..166326216,+!p1@CSRNP3!1.24!23.89!CSRNP3;;chr3:114819124..114819200,-!p3@ZBTB20!1.23!36.51!ZBTB20;;chr16:51185318..51185348,-!p2@SALL1!1.21!15.20!SALL1;;chr2:178128250..178128293,-!p6@NFE2L2!1.20!37.24!NFE2L2;;chr3:126076264..126076305,-!p2@KLF15!1.20!20.58!KLF15;;chr10:119302232..119302265,+!p1@EMX2!1.20!14.79!EMX2;;chr7:115670804..115670825,-!p1@TFEC!1.20!14.79!TFEC;;chr17:7492684..7492778,-!p2@SOX15!1.19!30.51!SOX15;;chr4:26344778..26344807,+!p8@RBPJ!1.19!14.58!RBPJ;;chr19:21512115..21512135,-!p3@ZNF708!1.18!28.75!ZNF708;;chr13:72441315..72441454,-!p1@DACH1!1.18!28.44!DACH1;;chr8:40755333..40755352,-!p1@ZMAT4!1.18!14.17!ZMAT4;;chr12:103351444..103351461,+!p1@ASCL1!1.18!14.07!ASCL1;;chr19:21512144..21512191,-!p2@ZNF708!1.16!62.58!ZNF708;;chr16:79634624..79634642,-!p1@MAF!1.16!53.06!MAF;;chr14:73360799..73360817,-!p1@DPF3!1.16!46.13!DPF3;;chr11:113930401..113930422,+!p3@ZBTB16!1.16!13.34!ZBTB16;;chrX:82763292..82763317,+!p1@POU3F4!1.16!13.34!POU3F4;;chr17:70117153..70117174,+!p1@SOX9!1.15!135.19!SOX9;;chr7:28725740..28725778,+!p1@CREB5!1.15!115.95!CREB5;;chr11:113930291..113930339,+!p2@ZBTB16!1.15!21.41!ZBTB16;;chr14:33403648..33403710,+!p3@NPAS3!1.15!13.24!NPAS3;;chr8:53322411..53322422,-!p6@ST18!1.14!12.93!ST18;;chr4:26344754..26344772,+!p10@RBPJ!1.14!12.83!RBPJ;;chr1:40105299..40105326,-!p1@HEYL!1.13!12.62!HEYL;;chr2:145275982..145276003,-!p7@ZEB2!1.13!12.52!ZEB2;;chr17:47439437..47439533,-!p1@ZNF652!1.12!98.88!ZNF652;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!1.12!12.31!SMARCE1;;chr15:57511609..57511651,+!p2@TCF12!1.11!20.07!TCF12;;chr6:126112074..126112144,+!p1@NCOA7!1.09!149.98!NCOA7;;chr19:38085768..38085821,+!p1@ZNF540!1.09!16.96!ZNF540;;chr16:67198633..67198671,+!p1@HSF4!1.09!11.38!HSF4;;chrX:25034067..25034088,-!p1@ARX!1.09!11.38!ARX;;chr20:21494654..21494678,-!p2@NKX2-2!1.09!11.17!NKX2-2;;chr5:71803177..71803255,-!p1@ZNF366!1.08!10.96!ZNF366;;chr6:28321971..28321995,-!p1@ZNF323!1.08!10.96!ZNF323;;chr19:57019215..570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|expression_enrichment_score=chr7:100065686..100065701,-!p2@TSC22D4!2.75!556.68!TSC22D4;;chr22:38380543..38380569,-!p1@SOX10!2.55!355.81!SOX10;;chr21:34442439..34442455,+!p1@OLIG1!2.53!339.26!OLIG1;;chr11:61520075..61520136,+!p1@C11orf9!2.32!420.46!C11orf9;;chr8:53322304..53322340,-!p1@ST18!2.19!154.84!ST18;;chr2:145277882..145277967,-!p3@ZEB2!1.99!161.56!ZEB2;;chr3:181429704..181429722,+!p1@SOX2!1.99!97.64!SOX2;;chr10:134599649..134599653,-!p1@NKX6-2!1.97!93.19!NKX6-2;;chr16:1031762..1031781,+!p1@SOX8!1.96!90.30!SOX8;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.96!89.37!PEG3;;chr21:34398234..34398250,+!p1@OLIG2!1.93!83.99!OLIG2;;chr8:53322347..53322378,-!p2@ST18!1.90!77.78!ST18;;chr12:26277817..26277863,-!p2@BHLHE41!1.89!101.47!BHLHE41;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.82!65.47!POU3F3;;chr12:26277956..26277980,-!p1@BHLHE41!1.79!210.38!BHLHE41;;chr21:34442540..34442560,+!p2@OLIG1!1.74!53.37!OLIG1;;chr10:48355030..48355090,+!p1@ZNF488!1.68!59.99!ZNF488;;chr12:106976678..106976708,+!p2@RFX4!1.64!42.92!RFX4;;chr19:46801639..46801699,+!p1@HIF3A!1.63!41.79!HIF3A;;chr11:113930425..113930471,+!p1@ZBTB16!1.61!56.78!ZBTB16;;chr9:114287433..114287513,+!p1@ZNF483!1.58!92.99!ZNF483;;chr3:126076242..126076257,-!p1@KLF15!1.58!45.92!KLF15;;chr16:85932760..85932775,+!p1@IRF8!1.54!34.03!IRF8;;chr1:214161272..214161322,+!p1@PROX1!1.53!46.13!PROX1;;chr12:54779511..54779577,-!p5@ZNF385A!1.53!33.10!ZNF385A;;chr11:47400078..47400106,-!p1@SPI1!1.51!31.34!SPI1;;chr2:95963052..95963106,+!p1@KCNIP3!1.47!28.34!KCNIP3;;chr15:80696703..80696754,+!p1@ARNT2!1.46!36.72!ARNT2;;chr4:81118647..81118666,+!p1@PRDM8!1.45!35.79!PRDM8;;chr19:13135386..13135435,+!p4@NFIX!1.45!27.10!NFIX;;chr9:77112244..77112262,+!p1@RORB!1.44!29.37!RORB;;chr3:181429741..181429767,+!p2@SOX2!1.42!25.13!SOX2;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.40!24.00!POU3F3;;chr15:80735246..80735321,+!p3@ARNT2!1.39!23.58!ARNT2;;chr11:31832862..31832884,-!p2@PAX6!1.38!23.17!PAX6;;chr19:30863271..30863338,+!p1@ZNF536!1.38!22.86!ZNF536;;chr17:53342311..53342400,+!p1@HLF!1.36!25.34!HLF;;chr7:63505799..63505904,+!p1@ZNF727!1.35!21.31!ZNF727;;chr12:106976774..106976788,+!p1@RFX4!1.33!20.48!RFX4;;chr6:19837592..19837621,+!p1@ID4!1.32!119.78!ID4;;chr1:61548069..61548102,+!p3@NFIA!1.32!47.58!NFIA;;chr10:64134120..64134183,+!p1@ZNF365!1.32!24.10!ZNF365;;chr14:33408072..33408114,+!p2@NPAS3!1.31!22.76!NPAS3;;chr19:46800289..46800327,+!p2@HIF3A!1.31!19.34!HIF3A;;chr14:29235961..29236008,+!p1@FOXG1!1.30!19.03!FOXG1;;chr14:33403881..33403924,+!p1@NPAS3!1.30!18.93!NPAS3;;chr14:29234581..29234601,+!p2@FOXG1!1.30!18.82!FOXG1;;chr22:41763452..41763466,+!p2@TEF!1.29!18.31!TEF;;chr2:214016314..214016343,-!p2@IKZF2!1.26!28.96!IKZF2;;chr12:26277929..26277955,-!p3@BHLHE41!1.26!24.41!BHLHE41;;chr16:51185172..51185197,-!p1@SALL1!1.26!17.07!SALL1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.25!16.96!ZBED1;;chr2:95963120..95963136,+!p2@KCNIP3!1.25!16.76!KCNIP3;;chr17:38219209..38219230,+!p1@THRA!1.24!209.14!THRA;;chr2:166326200..166326216,+!p1@CSRNP3!1.24!23.89!CSRNP3;;chr3:114819124..114819200,-!p3@ZBTB20!1.23!36.51!ZBTB20;;chr16:51185318..51185348,-!p2@SALL1!1.21!15.20!SALL1;;chr2:178128250..178128293,-!p6@NFE2L2!1.20!37.24!NFE2L2;;chr3:126076264..126076305,-!p2@KLF15!1.20!20.58!KLF15;;chr10:119302232..119302265,+!p1@EMX2!1.20!14.79!EMX2;;chr7:115670804..115670825,-!p1@TFEC!1.20!14.79!TFEC;;chr17:7492684..7492778,-!p2@SOX15!1.19!30.51!SOX15;;chr4:26344778..26344807,+!p8@RBPJ!1.19!14.58!RBPJ;;chr19:21512115..21512135,-!p3@ZNF708!1.18!28.75!ZNF708;;chr13:72441315..72441454,-!p1@DACH1!1.18!28.44!DACH1;;chr8:40755333..40755352,-!p1@ZMAT4!1.18!14.17!ZMAT4;;chr12:103351444..103351461,+!p1@ASCL1!1.18!14.07!ASCL1;;chr19:21512144..21512191,-!p2@ZNF708!1.16!62.58!ZNF708;;chr16:79634624..79634642,-!p1@MAF!1.16!53.06!MAF;;chr14:73360799..73360817,-!p1@DPF3!1.16!46.13!DPF3;;chr11:113930401..113930422,+!p3@ZBTB16!1.16!13.34!ZBTB16;;chrX:82763292..82763317,+!p1@POU3F4!1.16!13.34!POU3F4;;chr17:70117153..70117174,+!p1@SOX9!1.15!135.19!SOX9;;chr7:28725740..28725778,+!p1@CREB5!1.15!115.95!CREB5;;chr11:113930291..113930339,+!p2@ZBTB16!1.15!21.41!ZBTB16;;chr14:33403648..33403710,+!p3@NPAS3!1.15!13.24!NPAS3;;chr8:53322411..53322422,-!p6@ST18!1.14!12.93!ST18;;chr4:26344754..26344772,+!p10@RBPJ!1.14!12.83!RBPJ;;chr1:40105299..40105326,-!p1@HEYL!1.13!12.62!HEYL;;chr2:145275982..145276003,-!p7@ZEB2!1.13!12.52!ZEB2;;chr17:47439437..47439533,-!p1@ZNF652!1.12!98.88!ZNF652;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!1.12!12.31!SMARCE1;;chr15:57511609..57511651,+!p2@TCF12!1.11!20.07!TCF12;;chr6:126112074..126112144,+!p1@NCOA7!1.09!149.98!NCOA7;;chr19:38085768..38085821,+!p1@ZNF540!1.09!16.96!ZNF540;;chr16:67198633..67198671,+!p1@HSF4!1.09!11.38!HSF4;;chrX:25034067..25034088,-!p1@ARX!1.09!11.38!ARX;;chr20:21494654..21494678,-!p2@NKX2-2!1.09!11.17!NKX2-2;;chr5:71803177..71803255,-!p1@ZNF366!1.08!10.96!ZNF366;;chr6:28321971..28321995,-!p1@ZNF323!1.08!10.96!ZNF323;;chr19:57019215..570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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000955;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001890;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001894;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0010225
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0010316
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0010316
|fonse_cell_line=
|fonse_cell_line=
Line 38: Line 43:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/thalamus%252c%2520adult%252c%2520donor10252.CNhs12314.10154-103A1.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/thalamus%252c%2520adult%252c%2520donor10252.CNhs12314.10154-103A1.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/thalamus%252c%2520adult%252c%2520donor10252.CNhs12314.10154-103A1.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/thalamus%252c%2520adult%252c%2520donor10252.CNhs12314.10154-103A1.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/thalamus%252c%2520adult%252c%2520donor10252.CNhs12314.10154-103A1.hg38.nobarcode.ctss.bed.gz
|id=FF:10154-103A1
|id=FF:10154-103A1
|is_a=EFO:0002091;;FF:0000002;;FF:0010154
|is_a=EFO:0002091;;FF:0000002;;FF:0010154
|is_obsolete=
|is_obsolete=
|library_id=CNhs12314
|library_id_phase_based=2:CNhs12314
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10154
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10154
|name=thalamus, adult, donor10252
|name=thalamus, adult, donor10252
|namespace=FANTOM5
|namespace=FANTOM5
Line 46: Line 62:
|profile_cagescan=NCig10026,,,
|profile_cagescan=NCig10026,,,
|profile_hcage=CNhs12314,LSID913,release011,COMPLETED
|profile_hcage=CNhs12314,LSID913,release011,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 63: Line 80:
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|sample_cell_line=
Line 84: Line 102:
|top_motifs=SOX2:3.86534744814;SOX5:3.461378557;SOX{8,9,10}:3.09131237355;NFIX:2.94021646835;MYFfamily:2.93576150708;HBP1_HMGB_SSRP1_UBTF:2.89669781429;RREB1:2.89633821491;GATA4:2.89168152212;RFX2..5_RFXANK_RFXAP:2.61044074327;REST:2.57231346844;NHLH1,2:2.5607509101;ATF2:2.52095823459;ZFP161:2.51673685259;MED-1{core}:2.51466038503;CUX2:2.43562026534;FOXP1:2.42931768205;OCT4_SOX2{dimer}:2.40134316771;NKX3-2:2.2780060286;BPTF:2.25911087748;POU6F1:2.24662935831;PRDM1:2.19253351869;GTF2I:2.17496988896;FOXD3:2.13077135139;PATZ1:2.05898430858;DBP:1.98473563488;EGR1..3:1.93322490048;SOX17:1.93298809858;ZBTB6:1.93287740301;ARID5B:1.91342742627;TGIF1:1.9134039267;NKX6-1,2:1.88650123925;MZF1:1.88351173408;AR:1.86319857637;HIC1:1.8526288816;RFX1:1.85226239342;MTE{core}:1.80643283838;FOX{F1,F2,J1}:1.78323369121;TLX2:1.76218839796;FOXQ1:1.75716920482;LMO2:1.75452461671;TOPORS:1.7531699191;RBPJ:1.74741141838;FOXO1,3,4:1.74240458395;PRRX1,2:1.73865327469;FOXP3:1.73292142514;XBP1:1.73273248671;NR3C1:1.73096885276;CDC5L:1.72772477622;TFAP2B:1.69639918585;EP300:1.68969369777;MTF1:1.61954206278;MAFB:1.60516782854;POU5F1:1.54220174082;PAX6:1.53888450981;MAZ:1.53744369173;PAX5:1.53390919096;ZNF384:1.52470334319;FOXM1:1.52122135983;FOX{D1,D2}:1.47533438504;ZBTB16:1.42992903412;PDX1:1.40677918781;SMAD1..7,9:1.39082980657;SREBF1,2:1.34092888057;KLF4:1.27671874952;PAX4:1.25609593413;AHR_ARNT_ARNT2:1.24969292119;LEF1_TCF7_TCF7L1,2:1.21627807951;NRF1:1.20465176948;IKZF2:1.18940682789;T:1.15142833167;ZNF143:1.14673237985;MYBL2:1.14205302851;SP1:1.11569873619;STAT1,3:1.11144470246;HOXA9_MEIS1:1.1061668124;BREu{core}:1.08132617195;NANOG:1.04201093525;ONECUT1,2:1.00367875468;FOX{I1,J2}:0.980330282306;TLX1..3_NFIC{dimer}:0.963841002374;NFIL3:0.963302737517;HOX{A4,D4}:0.878942601814;EBF1:0.85627075483;STAT2,4,6:0.816738132907;SPZ1:0.80672345186;ZNF238:0.788447877673;TFAP2{A,C}:0.782770643116;HOX{A6,A7,B6,B7}:0.776891423695;HSF1,2:0.772468778886;GFI1B:0.709879572147;ALX1:0.69412198059;GTF2A1,2:0.673867196038;ZNF423:0.664802351859;JUN:0.647784365095;IRF7:0.631974541939;GFI1:0.616598915499;HAND1,2:0.568877612431;HMGA1,2:0.562698995638;ADNP_IRX_SIX_ZHX:0.558139879816;CRX:0.536303133423;HMX1:0.506168617447;CREB1:0.500223759158;POU3F1..4:0.498375045498;CDX1,2,4:0.492595246325;TFDP1:0.466783909763;PITX1..3:0.455974197574;ZIC1..3:0.446591296831;GCM1,2:0.398553063571;VSX1,2:0.321283851455;GZF1:0.303046219818;NFY{A,B,C}:0.278991043386;POU1F1:0.242117517306;IRF1,2:0.19697155155;PAX2:0.191735868742;FOXN1:0.189192056296;NKX2-3_NKX2-5:0.138847031298;NFATC1..3:0.0905260462385;RORA:0.0830294578469;FOXA2:0.0700037378929;MEF2{A,B,C,D}:0.00750724260114;TEF:-0.00978290218878;ATF5_CREB3:-0.027934942277;YY1:-0.0536463804356;MYOD1:-0.0591893448349;NKX2-2,8:-0.0804177469975;ZEB1:-0.0818350477541;PBX1:-0.12695524709;XCPE1{core}:-0.169164543468;AIRE:-0.200327922624;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.214342890301;ESRRA:-0.240785127597;UFEwm:-0.253764276022;SPI1:-0.303233928358;LHX3,4:-0.339922685967;SPIB:-0.456046233536;ATF4:-0.468433198149;TFCP2:-0.4746165008;NFE2L2:-0.486198306177;bHLH_family:-0.487597841211;DMAP1_NCOR{1,2}_SMARC:-0.499672678596;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.501181702348;EVI1:-0.5129228136;ETS1,2:-0.515730001303;HNF4A_NR2F1,2:-0.584993766876;FOXL1:-0.603965871496;TFAP4:-0.621391429721;IKZF1:-0.630641321409;NR1H4:-0.631433531477;CEBPA,B_DDIT3:-0.692828151065;NKX3-1:-0.737287638028;HIF1A:-0.753751863979;GATA6:-0.779664964088;NR5A1,2:-0.779848923472;ALX4:-0.795069983465;TP53:-0.795452682741;NFE2:-0.804796788599;NANOG{mouse}:-0.828597520993;PAX1,9:-0.840322546375;TBX4,5:-0.844856496204;SNAI1..3:-0.86719056529;ELK1,4_GABP{A,B1}:-0.931731790618;TEAD1:-0.94362620792;ATF6:-0.945064676818;HNF1A:-0.974126739683;ELF1,2,4:-0.977366696876;NFE2L1:-0.985079705711;FOSL2:-1.01725604751;PAX8:-1.01765977071;RXR{A,B,G}:-1.0430676508;NKX2-1,4:-1.05072895944;E2F1..5:-1.064673931;NFKB1_REL_RELA:-1.0848600766;FOS_FOS{B,L1}_JUN{B,D}:-1.15796914862;PAX3,7:-1.16242993324;BACH2:-1.18898981375;MYB:-1.19671497429;RUNX1..3:-1.20470701193;HLF:-1.20507227615;TBP:-1.27630341695;ESR1:-1.28224355854;POU2F1..3:-1.40305926504;SRF:-1.47479103286;TAL1_TCF{3,4,12}:-1.47761562606;HES1:-1.51767600572;RXRA_VDR{dimer}:-1.52690884268;NR6A1:-1.52889065765;GLI1..3:-1.58244219217;ZNF148:-1.60205141033;STAT5{A,B}:-2.15241197602;EN1,2:-2.25625153805;HOX{A5,B5}:-2.79879489502;PPARG:-2.97514001391
|top_motifs=SOX2:3.86534744814;SOX5:3.461378557;SOX{8,9,10}:3.09131237355;NFIX:2.94021646835;MYFfamily:2.93576150708;HBP1_HMGB_SSRP1_UBTF:2.89669781429;RREB1:2.89633821491;GATA4:2.89168152212;RFX2..5_RFXANK_RFXAP:2.61044074327;REST:2.57231346844;NHLH1,2:2.5607509101;ATF2:2.52095823459;ZFP161:2.51673685259;MED-1{core}:2.51466038503;CUX2:2.43562026534;FOXP1:2.42931768205;OCT4_SOX2{dimer}:2.40134316771;NKX3-2:2.2780060286;BPTF:2.25911087748;POU6F1:2.24662935831;PRDM1:2.19253351869;GTF2I:2.17496988896;FOXD3:2.13077135139;PATZ1:2.05898430858;DBP:1.98473563488;EGR1..3:1.93322490048;SOX17:1.93298809858;ZBTB6:1.93287740301;ARID5B:1.91342742627;TGIF1:1.9134039267;NKX6-1,2:1.88650123925;MZF1:1.88351173408;AR:1.86319857637;HIC1:1.8526288816;RFX1:1.85226239342;MTE{core}:1.80643283838;FOX{F1,F2,J1}:1.78323369121;TLX2:1.76218839796;FOXQ1:1.75716920482;LMO2:1.75452461671;TOPORS:1.7531699191;RBPJ:1.74741141838;FOXO1,3,4:1.74240458395;PRRX1,2:1.73865327469;FOXP3:1.73292142514;XBP1:1.73273248671;NR3C1:1.73096885276;CDC5L:1.72772477622;TFAP2B:1.69639918585;EP300:1.68969369777;MTF1:1.61954206278;MAFB:1.60516782854;POU5F1:1.54220174082;PAX6:1.53888450981;MAZ:1.53744369173;PAX5:1.53390919096;ZNF384:1.52470334319;FOXM1:1.52122135983;FOX{D1,D2}:1.47533438504;ZBTB16:1.42992903412;PDX1:1.40677918781;SMAD1..7,9:1.39082980657;SREBF1,2:1.34092888057;KLF4:1.27671874952;PAX4:1.25609593413;AHR_ARNT_ARNT2:1.24969292119;LEF1_TCF7_TCF7L1,2:1.21627807951;NRF1:1.20465176948;IKZF2:1.18940682789;T:1.15142833167;ZNF143:1.14673237985;MYBL2:1.14205302851;SP1:1.11569873619;STAT1,3:1.11144470246;HOXA9_MEIS1:1.1061668124;BREu{core}:1.08132617195;NANOG:1.04201093525;ONECUT1,2:1.00367875468;FOX{I1,J2}:0.980330282306;TLX1..3_NFIC{dimer}:0.963841002374;NFIL3:0.963302737517;HOX{A4,D4}:0.878942601814;EBF1:0.85627075483;STAT2,4,6:0.816738132907;SPZ1:0.80672345186;ZNF238:0.788447877673;TFAP2{A,C}:0.782770643116;HOX{A6,A7,B6,B7}:0.776891423695;HSF1,2:0.772468778886;GFI1B:0.709879572147;ALX1:0.69412198059;GTF2A1,2:0.673867196038;ZNF423:0.664802351859;JUN:0.647784365095;IRF7:0.631974541939;GFI1:0.616598915499;HAND1,2:0.568877612431;HMGA1,2:0.562698995638;ADNP_IRX_SIX_ZHX:0.558139879816;CRX:0.536303133423;HMX1:0.506168617447;CREB1:0.500223759158;POU3F1..4:0.498375045498;CDX1,2,4:0.492595246325;TFDP1:0.466783909763;PITX1..3:0.455974197574;ZIC1..3:0.446591296831;GCM1,2:0.398553063571;VSX1,2:0.321283851455;GZF1:0.303046219818;NFY{A,B,C}:0.278991043386;POU1F1:0.242117517306;IRF1,2:0.19697155155;PAX2:0.191735868742;FOXN1:0.189192056296;NKX2-3_NKX2-5:0.138847031298;NFATC1..3:0.0905260462385;RORA:0.0830294578469;FOXA2:0.0700037378929;MEF2{A,B,C,D}:0.00750724260114;TEF:-0.00978290218878;ATF5_CREB3:-0.027934942277;YY1:-0.0536463804356;MYOD1:-0.0591893448349;NKX2-2,8:-0.0804177469975;ZEB1:-0.0818350477541;PBX1:-0.12695524709;XCPE1{core}:-0.169164543468;AIRE:-0.200327922624;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.214342890301;ESRRA:-0.240785127597;UFEwm:-0.253764276022;SPI1:-0.303233928358;LHX3,4:-0.339922685967;SPIB:-0.456046233536;ATF4:-0.468433198149;TFCP2:-0.4746165008;NFE2L2:-0.486198306177;bHLH_family:-0.487597841211;DMAP1_NCOR{1,2}_SMARC:-0.499672678596;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.501181702348;EVI1:-0.5129228136;ETS1,2:-0.515730001303;HNF4A_NR2F1,2:-0.584993766876;FOXL1:-0.603965871496;TFAP4:-0.621391429721;IKZF1:-0.630641321409;NR1H4:-0.631433531477;CEBPA,B_DDIT3:-0.692828151065;NKX3-1:-0.737287638028;HIF1A:-0.753751863979;GATA6:-0.779664964088;NR5A1,2:-0.779848923472;ALX4:-0.795069983465;TP53:-0.795452682741;NFE2:-0.804796788599;NANOG{mouse}:-0.828597520993;PAX1,9:-0.840322546375;TBX4,5:-0.844856496204;SNAI1..3:-0.86719056529;ELK1,4_GABP{A,B1}:-0.931731790618;TEAD1:-0.94362620792;ATF6:-0.945064676818;HNF1A:-0.974126739683;ELF1,2,4:-0.977366696876;NFE2L1:-0.985079705711;FOSL2:-1.01725604751;PAX8:-1.01765977071;RXR{A,B,G}:-1.0430676508;NKX2-1,4:-1.05072895944;E2F1..5:-1.064673931;NFKB1_REL_RELA:-1.0848600766;FOS_FOS{B,L1}_JUN{B,D}:-1.15796914862;PAX3,7:-1.16242993324;BACH2:-1.18898981375;MYB:-1.19671497429;RUNX1..3:-1.20470701193;HLF:-1.20507227615;TBP:-1.27630341695;ESR1:-1.28224355854;POU2F1..3:-1.40305926504;SRF:-1.47479103286;TAL1_TCF{3,4,12}:-1.47761562606;HES1:-1.51767600572;RXRA_VDR{dimer}:-1.52690884268;NR6A1:-1.52889065765;GLI1..3:-1.58244219217;ZNF148:-1.60205141033;STAT5{A,B}:-2.15241197602;EN1,2:-2.25625153805;HOX{A5,B5}:-2.79879489502;PPARG:-2.97514001391
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10154-103A1;search_select_hide=table117:FF:10154-103A1
}}
}}

Latest revision as of 12:22, 3 June 2020

Name:thalamus, adult, donor10252
Species:Human (Homo sapiens)
Library ID:CNhs12314
Sample type:tissues
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuethalamus
dev stageNA
sexfemale
age76
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyNA
collaborationPeter Heutink
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005223
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12314 CAGE DRX008742 DRR009614
Accession ID Hg19

Library idBAMCTSS
CNhs12314 DRZ001039 DRZ002424
Accession ID Hg38

Library idBAMCTSS
CNhs12314 DRZ012389 DRZ013774
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload
HumanCAGEScan Download raw sequence, BAM & CTSS

Library id3prime-FASTQ5prime-FASTQBAMCTSS
NCig10026downloaddownloaddownloaddownload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0.181
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.957
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.306
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0.0427
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0.286
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0.21
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.0817
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40.0427
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0.175
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0.0427
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.0817
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0.0427
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0.117
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0.389
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.0289
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.266
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.789
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.15
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40.0817
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.0678
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0.0427
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.0217
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.0427
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.86
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0.0427
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.229
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0.117
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.0427
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.0817
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0.0427
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0.237
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0.0427
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0.15
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.0526
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.0404
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0.487
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.107
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0.0427
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0.262
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.526
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.383
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial1.1
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.0817
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0.181
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0.35
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0.0817
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0.33
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0.237
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0.286
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0.752
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.117
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0.424
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0.0817
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12314

Jaspar motifP-value
MA0002.20.0437
MA0003.10.192
MA0004.10.323
MA0006.10.306
MA0007.10.518
MA0009.10.115
MA0014.10.704
MA0017.10.00114
MA0018.20.58
MA0019.10.921
MA0024.10.611
MA0025.10.962
MA0027.10.533
MA0028.10.0587
MA0029.10.0297
MA0030.10.108
MA0031.10.147
MA0035.20.00781
MA0038.10.272
MA0039.20.166
MA0040.10.844
MA0041.10.431
MA0042.10.923
MA0043.10.856
MA0046.10.00141
MA0047.20.468
MA0048.10.134
MA0050.10.145
MA0051.10.232
MA0052.10.542
MA0055.16.49112e-4
MA0057.10.804
MA0058.10.387
MA0059.10.0704
MA0060.10.356
MA0061.10.00352
MA0062.20.0029
MA0065.26.72148e-4
MA0066.10.00677
MA0067.10.886
MA0068.10.748
MA0069.10.77
MA0070.10.593
MA0071.10.0136
MA0072.10.349
MA0073.10.522
MA0074.10.243
MA0076.10.116
MA0077.10.00762
MA0078.10.805
MA0079.20.894
MA0080.21.05347e-6
MA0081.10.0249
MA0083.10.00698
MA0084.10.176
MA0087.10.287
MA0088.10.355
MA0090.10.193
MA0091.10.548
MA0092.10.214
MA0093.10.375
MA0099.21.36423e-24
MA0100.10.528
MA0101.10.00229
MA0102.20.103
MA0103.10.052
MA0104.20.406
MA0105.13.1952e-4
MA0106.10.0216
MA0107.10.00169
MA0108.20.0579
MA0111.10.782
MA0112.20.00106
MA0113.10.964
MA0114.10.00278
MA0115.10.746
MA0116.10.00375
MA0117.10.761
MA0119.10.254
MA0122.10.78
MA0124.10.93
MA0125.10.444
MA0131.10.937
MA0135.10.325
MA0136.11.48527e-10
MA0137.20.246
MA0138.20.549
MA0139.10.494
MA0140.10.00787
MA0141.10.0019
MA0142.10.429
MA0143.10.0387
MA0144.10.692
MA0145.10.276
MA0146.10.0319
MA0147.10.225
MA0148.10.422
MA0149.10.0137
MA0150.14.35556e-5
MA0152.10.571
MA0153.10.236
MA0154.10.0495
MA0155.10.57
MA0156.13.82932e-7
MA0157.10.68
MA0159.10.0115
MA0160.10.012
MA0162.10.131
MA0163.19.4947e-7
MA0164.10.679
MA0258.10.018
MA0259.10.724



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12314

Novel motifP-value
10.074
100.0567
1000.371
1010.401
1020.925
1030.0505
1040.104
1050.158
1060.0249
1070.129
1080.918
1099.81437e-4
110.00877
1100.0519
1110.219
1120.332
1130.332
1140.191
1150.823
1160.144
1170.0157
1180.27
1190.297
120.49
1200.206
1210.392
1220.828
1230.274
1240.266
1250.542
1260.046
1270.4
1280.169
1290.51
130.00362
1300.34
1310.0417
1320.425
1330.115
1340.472
1350.184
1368.82695e-4
1370.887
1380.915
1390.281
140.923
1400.982
1410.415
1420.353
1430.0409
1440.697
1450.29
1460.624
1470.804
1480.475
1490.28
150.0687
1500.108
1510.822
1520.0656
1530.89
1540.278
1550.958
1560.412
1570.409
1580.0857
1590.00477
160.0268
1600.237
1610.364
1620.654
1630.916
1640.0136
1650.168
1660.812
1670.903
1680.741
1690.0227
170.0905
180.0546
190.264
20.903
200.144
210.0383
220.227
230.389
240.0453
250.544
260.00313
270.517
280.855
290.00332
30.0684
300.925
310.91
320.00961
330.0461
340.675
350.614
360.241
370.0312
380.441
390.3
40.793
400.0541
410.312
420.265
430.141
440.123
450.68
460.0513
470.0791
480.063
490.384
50.928
500.481
510.387
520.592
530.474
540.536
550.727
560.596
570.405
580.362
590.0554
60.797
600.0864
610.137
620.207
630.338
640.138
650.266
660.112
670.329
680.446
690.262
70.121
700.0628
710.00918
720.272
730.0249
740.869
750.0263
760.332
770.118
780.00189
790.361
80.0604
800.437
810.509
820.636
830.0468
840.572
850.366
860.211
871.07957e-4
880.628
890.165
90.366
900.0702
910.737
920.448
930.904
940.209
950.0116
960.774
970.744
980.222
990.588



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12314


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0001897 (dorsal plus ventral thalamus)
0001894 (diencephalon)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0002784 (regional part of diencephalon)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0001890 (forebrain)
0010225 (thalamic complex)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010154 (human thalamus - adult donor sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)

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