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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00004790
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004790
|HumanCAGEScanFiles=NCig10044;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Mesothelial%2520Cells%252c%2520donor1.NCig10044.11247-116E5.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Mesothelial%2520Cells%252c%2520donor1.NCig10044.11247-116E5.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Mesothelial%2520Cells%252c%2520donor1.NCig10044.11247-116E5.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Mesothelial%2520Cells%252c%2520donor1.NCig10044.11247-116E5.hg19.GCTATA.pairs.bed.gz
|accession_numbers=CAGE;DRX008363;DRR009235;DRZ000660;DRZ002045;DRZ012010;DRZ013395
|accession_numbers_RNASeq=sRNA-Seq;DRX037113;DRR041479;DRZ007121
|ancestors_in_anatomy_facet=
|ancestors_in_anatomy_facet=
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000076,CL:0000213,CL:0000215,CL:0000255,CL:0000077
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000076,CL:0000213,CL:0000215,CL:0000255,CL:0000077
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr2:19558373..19558392,-!p1@OSR1!2.06!301.44!OSR1;;chr11:61520075..61520136,+!p1@C11orf9!1.87!148.91!C11orf9;;chr4:174451370..174451387,-!p1@HAND2!1.67!45.52!HAND2;;chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!1.64!42.50!SEBOX;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!1.62!40.39!SEBOX;;chr18:19749386..19749404,+!p2@GATA6!1.58!52.15!GATA6;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.57!36.47!ZBED1;;chr10:51572408..51572454,+!p3@NCOA4!1.51!176.64!NCOA4;;chr20:6748325..6748352,+!p1@BMP2!1.47!40.69!BMP2;;chr6:19837592..19837621,+!p1@ID4!1.39!140.47!ID4;;chr20:61051039..61051057,-!p1@GATA5!1.36!22.01!GATA5;;chr11:32457075..32457095,-!p1@WT1!1.33!20.50!WT1;;chr18:19749541..19749557,+!p1@GATA6!1.29!57.57!GATA6;;chr3:25470156..25470227,+!p2@RARB!1.28!18.09!RARB;;chr10:51572339..51572376,+!p4@NCOA4!1.27!38.89!NCOA4;;chr1:151032860..151032918,+!p1@MLLT11!1.25!195.33!MLLT11;;chr8:37963466..37963506,+!p3@ASH2L!1.22!19.59!ASH2L;;chr12:26277817..26277863,-!p2@BHLHE41!1.21!20.50!BHLHE41;;chr6:28321971..28321995,-!p1@ZNF323!1.18!14.17!ZNF323;;chr2:45236540..45236577,-!p1@SIX2!1.18!14.17!SIX2;;chr4:174450089..174450153,-!p2@HAND2!1.12!12.06!HAND2;;chr16:79633894..79633954,-!p3@MAF!1.10!22.31!MAF;;chr12:8186270..8186292,+!p3@FOXJ2!1.08!11.15!FOXJ2;;chr3:25469815..25469866,+!p3@RARB!1.06!10.55!RARB;;chr18:19749353..19749367,+!p4@GATA6!1.05!10.25!GATA6;;chr16:79634624..79634642,-!p1@MAF!1.03!38.89!MAF;;chr19:58400344..58400364,-!p2@ZNF814!1.03!14.17!ZNF814;;chr1:151032739..151032748,+!p6@MLLT11!1.01!11.76!MLLT11;;chr17:26697257..26697268,-!p3@SEBOX,p3@VTN!1.01!9.34!SEBOX;;chr1:158985493..158985535,+!p4@IFI16!1.00!13.87!IFI16;;chr7:27183263..27183284,-!p2@HOXA5!0.99!8.74!HOXA5;;chr8:72756267..72756296,-!p4@MSC!0.98!12.66!MSC;;chr15:83953397..83953425,-!p1@BNC1!0.98!9.95!BNC1;;chr7:27183291..27183324,-!p1@HOXA5!0.97!8.44!HOXA5;;chr6:28321909..28321965,-!p3@ZNF323!0.96!8.14!ZNF323;;chr12:54447637..54447659,+!p4@HOXC4!0.96!8.14!HOXC4;;chr9:96717629..96717644,-!p1@BARX1!0.96!8.14!BARX1;;chr15:42749722..42749739,-!p2@ZFP106!0.95!14.47!ZFP106;;chr8:72756213..72756243,-!p5@MSC!0.95!10.25!MSC;;chr16:79634595..79634620,-!p2@MAF!0.94!14.47!MAF;;chr8:72756637..72756664,-!p3@MSC!0.94!8.74!MSC;;chr8:72756667..72756736,-!p2@MSC!0.93!12.06!MSC;;chr7:63505799..63505904,+!p1@ZNF727!0.93!7.54!ZNF727;;chr8:106330656..106330684,+!p1@ZFPM2!0.92!19.59!ZFPM2;;chr1:151032922..151032951,+!p2@MLLT11!0.92!12.36!MLLT11;;chr17:46622070..46622109,-!p1@HOXB2!0.91!16.28!HOXB2;;chr6:85473156..85473210,-!p2@TBX18!0.91!8.74!TBX18;;chr14:62162258..62162269,+!p2@HIF1A!0.90!69.63!HIF1A;;chr14:62162285..62162296,+!p3@HIF1A!0.90!37.68!HIF1A;;chr1:151032782..151032801,+!p4@MLLT11!0.90!14.17!MLLT11;;chr7:27170359..27170381,-!p1@HOXA4!0.90!6.93!HOXA4;;chr5:92918919..92918942,+!p1@NR2F1!0.88!31.05!NR2F1;;chr17:46688334..46688385,-!p1@HOXB7!0.88!9.65!HOXB7;;chr5:172662197..172662216,-!p1@NKX2-5!0.88!6.63!NKX2-5;;chr7:27183114..27183138,-!p3@HOXA5!0.88!6.63!HOXA5;;chr3:25470062..25470084,+!p4@RARB!0.88!6.63!RARB;;chr8:37963407..37963454,+!p2@ASH2L!0.86!19.59!ASH2L;;chr7:27153454..27153469,-!p2@HOXA3!0.85!6.03!HOXA3;;chr7:27183191..27183214,-!p4@HOXA5!0.85!6.03!HOXA5;;chr7:64467057..64467078,-!p1@ZNF117!0.84!116.96!ZNF117;;chr9:16728161..16728185,-!p4@BNC2!0.83!5.73!BNC2;;chr9:16728047..16728061,-!p8@BNC2!0.83!5.73!BNC2;;chr16:79634581..79634592,-!p4@MAF!0.83!5.73!MAF;;chr8:72756063..72756125,-!p1@MSC!0.82!11.76!MSC;;chr3:114343768..114343822,-!p1@ZBTB20!0.81!25.62!ZBTB20;;chr4:87857474..87857489,+!p7@AFF1!0.81!9.95!AFF1;;chr19:53496768..53496799,-!p1@ZNF702P!0.81!8.74!ZNF702P;;chr16:88519743..88519754,+!p2@ZFPM1!0.81!6.03!ZFPM1;;chr17:46687959..46688007,-!p2@HOXB7!0.80!7.54!HOXB7;;chr16:88519669..88519726,+!p1@ZFPM1!0.79!50.34!ZFPM1;;chr12:26277956..26277980,-!p1@BHLHE41!0.79!19.89!BHLHE41;;chr17:46682321..46682362,-!p1@HOXB6!0.79!5.12!HOXB6;;chr2:45236579..45236596,-!p2@SIX2!0.79!5.12!SIX2;;chr4:174451350..174451363,-!p3@HAND2!0.79!5.12!HAND2;;chr15:100106670..100106697,+!p4@MEF2A!0.78!8.74!MEF2A;;chr6:10415276..10415341,-!p2@TFAP2A!0.78!6.33!TFAP2A;;chr1:42384532..42384603,-!p2@HIVEP3!0.77!4.82!HIVEP3;;chr18:45663490..45663528,-!p2@ZBTB7C!0.77!4.82!ZBTB7C;;chr19:22193731..22193751,-!p1@ZNF208!0.77!4.82!ZNF208;;chr3:178789522..178789564,-!p2@ZMAT3!0.75!37.68!ZMAT3;;chr2:46612334..46612349,+!p6@EPAS1!0.75!6.33!EPAS1;;chr8:106330696..106330719,+!p2@ZFPM2!0.75!6.03!ZFPM2;;chrX:48900782..48900793,-!p3@TFE3!0.74!9.04!TFE3;;chr17:46622114..46622138,-!p4@HOXB2!0.74!7.23!HOXB2;;chr2:166326200..166326216,+!p1@CSRNP3!0.74!6.93!CSRNP3;;chr16:67881588..67881612,-!p2@CENPT!0.74!6.33!CENPT;;chr15:67418177..67418204,+!p9@SMAD3!0.74!4.52!SMAD3;;chr2:66662510..66662521,+!p6@MEIS1!0.74!4.52!MEIS1;;chr5:139492456..139492489,+!p7@PURA!0.74!4.52!PURA;;chr6:85473227..85473243,-!p5@TBX18!0.74!4.52!TBX18;;chr8:55370487..55370503,+!p1@SOX17!0.74!4.52!SOX17;;chr14:21994337..21994442,-!p1@SALL2!0.72!12.66!SALL2;;chr12:26277929..26277955,-!p3@BHLHE41!0.72!6.33!BHLHE41;;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8;;chr1:235491462..235491510,-!p1@ARID4B!0.16!23.51!ARID4B;;chr16:31724552..31724617,+!p1@ZNF720!0.16!17.48!ZNF720;;chr17:3571887..3571918,-!p2@TAX1BP3!0.16!13.87!TAX1BP3;;chr4:95128999..95129056,+!p2@SMARCAD1!0.16!13.26!SMARCAD1;;chr16:58034520..58034622,-!p@chr16:58034520..58034622,-!0.16!9.65!ZNF319;;chr2:174830564..174830605,-!p3@SP3!0.16!5.73!SP3;;chr16:3493446..3493510,-!p1@ZNF597!0.16!5.12!ZNF597;;chr8:42698194..42698239,-!p2@THAP1!0.16!5.12!THAP1;;chr19:12595586..12595637,-!p2@ZNF709!0.16!4.52!ZNF709;;chr10:105110890..105110914,-!p2@PCGF6!0.16!3.92!PCGF6;;chr21:30671690..30671762,+!p2@BACH1!0.16!3.62!BACH1;;chr12:46123050..46123129,+!p2@ARID2!0.16!3.32!ARID2;;chr19:23941680..23941704,-!p1@ZNF681!0.16!3.01!ZNF681;;chr1:200379104..200379128,-!p2@ZNF281!0.16!2.41!ZNF281;;chr3:12329358..12329393,+!p3@PPARG!0.16!2.41!PPARG;;chr16:3285049..3285081,-!p3@ZNF200!0.16!2.11!ZNF200;;chrX:77041657..77041668,-!p2@ATRX!0.16!1.81!ATRX;;chr19:52956798..52956843,+!p1@ZNF578!0.16!1.81!ZNF578;;chr1:43148625..43148710,+!p3@YBX1!0.16!1.51!YBX1;;chr3:141820622..141820635,-!p5@TFDP2!0.16!1.51!TFDP2;;chr17:38256799..38256815,-!p3@NR1D1!0.16!1.51!NR1D1;;chr7:148823387..148823440,-!p1@ZNF425!0.16!1.51!ZNF425;;chr8:182368..182402,+!p2@ZNF596!0.16!1.51!ZNF596;;chr6:28367481..28367506,-!p2@ZSCAN12!0.16!1.21!ZSCAN12;;chr15:96874216..96874236,+!p13@NR2F2!0.16!1.21!NR2F2;;chr15:100106126..100106135,+!p6@MEF2A!0.16!0.90!MEF2A;;chr16:4365715..4365746,+!p@chr16:4365715..4365746,+!0.16!0.90!GLIS2;;chr19:13136241..13136258,+!p7@NFIX!0.16!0.90!NFIX;;chr9:88969287..88969297,-!p3@ZCCHC6!0.16!0.90!ZCCHC6;;chr1:244219038..244219054,+!p3@ZNF238!0.16!0.90!ZNF238;;chr10:114710083..114710092,+!p8@TCF7L2!0.16!0.90!TCF7L2;;chr12:72056800..72056834,+!p1@THAP2!0.16!0.90!THAP2;;chr15:96869511..96869525,+!p16@NR2F2!0.16!0.60!NR2F2;;chr17:46622440..46622477,-!p5@HOXB2!0.16!0.60!HOXB2;;chr18:3447617..3447633,+!p20@TGIF1!0.16!0.60!TGIF1;;chr19:20748620..20748630,-!p3@ZNF737!0.16!0.60!ZNF737;;chr1:61548118..61548129,+!p9@NFIA!0.16!0.60!NFIA;;chrX:128657413..128657456,-!p2@SMARCA1!0.15!10.25!SMARCA1;;chr5:172483347..172483407,+!p1@C5orf41!0.15!9.04!CREBRF;;chr19:38146320..38146401,-!p1@ZFP30!0.15!6.33!ZFP30;;chr19:44488330..44488379,+!p1@ZNF155!0.15!5.43!ZNF155;;chr3:44596679..44596726,+!p1@ZNF167!0.15!4.82!ZNF167;;chr19:44576296..44576343,+!p2@ZNF284!0.15!4.22!ZNF284;;chr1:8483878..8483907,-!p4@RERE!0.15!4.22!RERE;;chr19:53696587..53696633,-!p1@ZNF665!0.15!3.92!ZNF665;;chr19:37096194..37096235,+!p1@ZNF382!0.15!3.32!ZNF382;;chr20:39946361..39946379,-!p2@ZHX3!0.15!3.01!ZHX3;;chr8:28243934..28243993,-!p3@ZNF395!0.15!2.71!ZNF395;;chr12:104532004..104532033,-!p4@NFYB!0.15!2.71!NFYB;;chr12:72057747..72057854,+!p4@THAP2!0.15!2.71!THAP2;;chr4:56413032..56413056,-!p2@CLOCK!0.15!2.41!CLOCK;;chr19:53662295..53662319,-!p1@ZNF347!0.15!2.41!ZNF347;;chr16:3185125..3185173,+!p1@ZNF213!0.15!2.41!ZNF213;;chr3:12329397..12329433,+!p2@PPARG!0.15!2.11!PPARG;;chr4:57774018..57774040,+!p3@REST!0.15!2.11!REST;;chr11:64073006..64073017,+!p3@ESRRA!0.15!2.11!ESRRA;;chr19:44905759..44905797,-!p2@ZFP112,p2@ZNF285!0.15!2.11!ZNF285;;chr5:178157700..178157734,-!p3@ZNF354A!0.15!1.81!ZNF354A;;chr19:21512115..21512135,-!p3@ZNF708!0.15!1.81!ZNF708;;chr20:39946400..39946423,-!p3@ZHX3!0.15!1.51!ZHX3;;chr19:42788611..42788634,+!p2@CIC!0.15!1.21!CIC;;chr17:41623009..41623053,-!p4@ETV4!0.15!1.21!ETV4;;chr19:37019569..37019593,-!p2@ZNF260!0.15!1.21!ZNF260;;chr22:38598042..38598052,+!p4@MAFF!0.15!1.21!MAFF;;chr9:4299959..4299974,-!p4@GLIS3!0.15!1.21!GLIS3;;
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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000076;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000077;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000213
|ffid_belonging_in_development=CL:0000222
|ffid_belonging_in_development=CL:0000222
|fonse_cell_line=
|fonse_cell_line=
Line 38: Line 45:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesothelial%2520Cells%252c%2520donor1.CNhs10850.11247-116E5.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesothelial%2520Cells%252c%2520donor1.CNhs10850.11247-116E5.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesothelial%2520Cells%252c%2520donor1.CNhs10850.11247-116E5.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mesothelial%2520Cells%252c%2520donor1.CNhs10850.11247-116E5.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mesothelial%2520Cells%252c%2520donor1.CNhs10850.11247-116E5.hg38.nobarcode.ctss.bed.gz
|id=FF:11247-116E5
|id=FF:11247-116E5
|is_a=EFO:0002091;;FF:0000099
|is_a=EFO:0002091;;FF:0000099
|is_obsolete=
|is_obsolete=
|library_id=CNhs10850
|library_id_phase_based=2:CNhs10850
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11247
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10008.CAGATC.11247
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11247
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10008.CAGATC.11247
|name=Mesothelial Cells, donor1
|name=Mesothelial Cells, donor1
|namespace=FANTOM5
|namespace=FANTOM5
Line 46: Line 66:
|profile_cagescan=NCig10044,,,
|profile_cagescan=NCig10044,,,
|profile_hcage=CNhs10850,LSID700,release009,COMPLETED
|profile_hcage=CNhs10850,LSID700,release009,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=SRhi10008,,,
|profile_srnaseq=SRhi10008,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 60: Line 81:
|rna_rin=
|rna_rin=
|rna_sample_type=total RNA
|rna_sample_type=total RNA
|rna_tube_id=116E5
|rna_tube_id=1.16E+07
|rna_weight_ug=16.9
|rna_weight_ug=16.9
|rnaseq_library_id=SRhi10008.CAGATC
|sample_age=45
|sample_age=45
|sample_category=primary cells
|sample_cell_catalog=F-MES-F
|sample_cell_catalog=F-MES-F
|sample_cell_line=
|sample_cell_line=
Line 84: Line 107:
|top_motifs=GZF1:2.07830431714;ONECUT1,2:1.70528316758;HOX{A5,B5}:1.61483994879;HSF1,2:1.61057177102;TEF:1.58954416358;NR1H4:1.54176575047;CRX:1.43471129629;EVI1:1.43446208966;NKX3-1:1.39063837354;MYBL2:1.30599454341;ZBTB6:1.28361363534;PAX4:1.07889239183;NFE2L2:1.05654235639;NKX3-2:0.999703464234;PAX5:0.963708443285;GCM1,2:0.84815244063;RXR{A,B,G}:0.843351245678;TEAD1:0.835935938685;SREBF1,2:0.820720666781;EP300:0.814167862423;SPZ1:0.786024025752;EN1,2:0.764789095395;HOX{A4,D4}:0.757427584349;MAZ:0.745662982185;TFCP2:0.731780138618;ZNF384:0.726152912499;NFATC1..3:0.699682316108;PAX1,9:0.680743868954;bHLH_family:0.680335938488;ZIC1..3:0.677936097457;PRDM1:0.658818590888;GFI1B:0.658320947298;NFE2L1:0.653193574848;GTF2A1,2:0.630774051893;HBP1_HMGB_SSRP1_UBTF:0.60646410074;MTE{core}:0.597558301554;HIF1A:0.592303112221;TLX1..3_NFIC{dimer}:0.579898541033;HMGA1,2:0.577894632411;GLI1..3:0.574778598432;NKX2-1,4:0.567840188946;TAL1_TCF{3,4,12}:0.566933249162;PPARG:0.557074298804;SP1:0.555403590842;ZNF148:0.537647971145;TLX2:0.51138680862;ADNP_IRX_SIX_ZHX:0.510408267803;TP53:0.504552501909;MTF1:0.494702908908;ARID5B:0.48472448429;GTF2I:0.467310708197;FOX{I1,J2}:0.46362399938;HOXA9_MEIS1:0.433914430048;NHLH1,2:0.43011521999;DBP:0.423643305977;HIC1:0.422167396511;SMAD1..7,9:0.400927936585;XBP1:0.392093406225;POU1F1:0.389925947638;FOSL2:0.378663678007;PRRX1,2:0.378516780761;IKZF1:0.365915018285;EBF1:0.358287594215;NR3C1:0.357488945573;HAND1,2:0.340110263248;TFAP2B:0.332938649951;UFEwm:0.327672248705;ZNF238:0.3209028142;PAX6:0.314768392526;JUN:0.31332939932;ELK1,4_GABP{A,B1}:0.305926577973;BACH2:0.305056294242;ZBTB16:0.295397775348;IRF1,2:0.286624143631;FOXO1,3,4:0.275171972432;XCPE1{core}:0.273839612605;HLF:0.273670824679;FOS_FOS{B,L1}_JUN{B,D}:0.269916676093;REST:0.268549624795;FOXD3:0.259014865479;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.25571691859;HNF1A:0.248720298573;ATF6:0.240185662052;NFIX:0.235813887373;IRF7:0.233149327523;MYOD1:0.202022847433;NKX2-2,8:0.193600979271;TBX4,5:0.187347244224;STAT5{A,B}:0.180403985662;EGR1..3:0.169380678831;LMO2:0.165715668382;POU6F1:0.141140898598;MAFB:0.122205305965;MZF1:0.121467492941;MYFfamily:0.11871505669;ESRRA:0.118595143861;NFE2:0.104587268784;STAT2,4,6:0.0969828076763;FOX{D1,D2}:0.0872851356533;SRF:0.077846931052;AR:0.0651907035987;SOX2:0.0491689493164;KLF4:0.0485447119122;AIRE:0.0422805243287;TBP:0.0398621830177;ESR1:0.0227668984023;ZNF143:0.0191017486674;PATZ1:0.0189075194323;NKX6-1,2:0.0110027869713;HNF4A_NR2F1,2:0.00992253647648;TOPORS:0.00294018063236;RFX1:-0.0171671851097;TFAP2{A,C}:-0.0320201675668;CDC5L:-0.0623073035341;STAT1,3:-0.0626093178008;HMX1:-0.0793854771812;OCT4_SOX2{dimer}:-0.0824366516934;ZFP161:-0.0851490975281;NFIL3:-0.0905183458503;PAX2:-0.0948479972557;FOXM1:-0.0954770300934;NFKB1_REL_RELA:-0.10171381072;NANOG:-0.109087498734;LEF1_TCF7_TCF7L1,2:-0.11854288672;LHX3,4:-0.130711094423;GATA6:-0.138436637889;T:-0.146029569883;NRF1:-0.162841028734;ALX4:-0.167321029291;SNAI1..3:-0.167634235669;ATF2:-0.180965683089;NR6A1:-0.187700496562;RREB1:-0.188674268902;FOXQ1:-0.197042491835;MED-1{core}:-0.204287295693;DMAP1_NCOR{1,2}_SMARC:-0.22508461534;ZNF423:-0.242289567189;ZEB1:-0.286776427382;PDX1:-0.300573773306;RXRA_VDR{dimer}:-0.306851277933;NKX2-3_NKX2-5:-0.319128757958;CDX1,2,4:-0.327061965295;ELF1,2,4:-0.343533809028;SOX17:-0.344097679386;RUNX1..3:-0.357212831188;FOXA2:-0.387705234962;SOX5:-0.392903903817;MEF2{A,B,C,D}:-0.40647568516;CEBPA,B_DDIT3:-0.410158404504;GATA4:-0.415003887912;FOXP1:-0.419553478794;POU3F1..4:-0.422292188531;RFX2..5_RFXANK_RFXAP:-0.441993445629;HOX{A6,A7,B6,B7}:-0.444702990381;SPI1:-0.472041962932;ETS1,2:-0.478531372323;TGIF1:-0.483004505737;FOX{F1,F2,J1}:-0.502912331638;SPIB:-0.520075899574;FOXP3:-0.531252638829;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.550298392783;RORA:-0.566653923923;FOXL1:-0.650898081843;TFAP4:-0.666726071516;ATF5_CREB3:-0.675177613921;ALX1:-0.688502091727;NANOG{mouse}:-0.689225718158;AHR_ARNT_ARNT2:-0.69539039829;RBPJ:-0.706359922987;PBX1:-0.70641847869;CUX2:-0.722105638773;FOXN1:-0.733880679862;YY1:-0.74528683341;GFI1:-0.753945653425;HES1:-0.779731642017;BPTF:-0.833579129012;NFY{A,B,C}:-0.842576611939;CREB1:-0.944524176148;PITX1..3:-0.969894899795;PAX3,7:-0.985581564881;VSX1,2:-1.03890181255;IKZF2:-1.05772640261;SOX{8,9,10}:-1.10057009171;ATF4:-1.12629662839;E2F1..5:-1.16493163751;NR5A1,2:-1.18750417781;POU5F1:-1.29427728249;TFDP1:-1.32890822969;POU2F1..3:-1.4744579208;BREu{core}:-1.52024608141;MYB:-1.74954007444;PAX8:-1.78025858732
|top_motifs=GZF1:2.07830431714;ONECUT1,2:1.70528316758;HOX{A5,B5}:1.61483994879;HSF1,2:1.61057177102;TEF:1.58954416358;NR1H4:1.54176575047;CRX:1.43471129629;EVI1:1.43446208966;NKX3-1:1.39063837354;MYBL2:1.30599454341;ZBTB6:1.28361363534;PAX4:1.07889239183;NFE2L2:1.05654235639;NKX3-2:0.999703464234;PAX5:0.963708443285;GCM1,2:0.84815244063;RXR{A,B,G}:0.843351245678;TEAD1:0.835935938685;SREBF1,2:0.820720666781;EP300:0.814167862423;SPZ1:0.786024025752;EN1,2:0.764789095395;HOX{A4,D4}:0.757427584349;MAZ:0.745662982185;TFCP2:0.731780138618;ZNF384:0.726152912499;NFATC1..3:0.699682316108;PAX1,9:0.680743868954;bHLH_family:0.680335938488;ZIC1..3:0.677936097457;PRDM1:0.658818590888;GFI1B:0.658320947298;NFE2L1:0.653193574848;GTF2A1,2:0.630774051893;HBP1_HMGB_SSRP1_UBTF:0.60646410074;MTE{core}:0.597558301554;HIF1A:0.592303112221;TLX1..3_NFIC{dimer}:0.579898541033;HMGA1,2:0.577894632411;GLI1..3:0.574778598432;NKX2-1,4:0.567840188946;TAL1_TCF{3,4,12}:0.566933249162;PPARG:0.557074298804;SP1:0.555403590842;ZNF148:0.537647971145;TLX2:0.51138680862;ADNP_IRX_SIX_ZHX:0.510408267803;TP53:0.504552501909;MTF1:0.494702908908;ARID5B:0.48472448429;GTF2I:0.467310708197;FOX{I1,J2}:0.46362399938;HOXA9_MEIS1:0.433914430048;NHLH1,2:0.43011521999;DBP:0.423643305977;HIC1:0.422167396511;SMAD1..7,9:0.400927936585;XBP1:0.392093406225;POU1F1:0.389925947638;FOSL2:0.378663678007;PRRX1,2:0.378516780761;IKZF1:0.365915018285;EBF1:0.358287594215;NR3C1:0.357488945573;HAND1,2:0.340110263248;TFAP2B:0.332938649951;UFEwm:0.327672248705;ZNF238:0.3209028142;PAX6:0.314768392526;JUN:0.31332939932;ELK1,4_GABP{A,B1}:0.305926577973;BACH2:0.305056294242;ZBTB16:0.295397775348;IRF1,2:0.286624143631;FOXO1,3,4:0.275171972432;XCPE1{core}:0.273839612605;HLF:0.273670824679;FOS_FOS{B,L1}_JUN{B,D}:0.269916676093;REST:0.268549624795;FOXD3:0.259014865479;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.25571691859;HNF1A:0.248720298573;ATF6:0.240185662052;NFIX:0.235813887373;IRF7:0.233149327523;MYOD1:0.202022847433;NKX2-2,8:0.193600979271;TBX4,5:0.187347244224;STAT5{A,B}:0.180403985662;EGR1..3:0.169380678831;LMO2:0.165715668382;POU6F1:0.141140898598;MAFB:0.122205305965;MZF1:0.121467492941;MYFfamily:0.11871505669;ESRRA:0.118595143861;NFE2:0.104587268784;STAT2,4,6:0.0969828076763;FOX{D1,D2}:0.0872851356533;SRF:0.077846931052;AR:0.0651907035987;SOX2:0.0491689493164;KLF4:0.0485447119122;AIRE:0.0422805243287;TBP:0.0398621830177;ESR1:0.0227668984023;ZNF143:0.0191017486674;PATZ1:0.0189075194323;NKX6-1,2:0.0110027869713;HNF4A_NR2F1,2:0.00992253647648;TOPORS:0.00294018063236;RFX1:-0.0171671851097;TFAP2{A,C}:-0.0320201675668;CDC5L:-0.0623073035341;STAT1,3:-0.0626093178008;HMX1:-0.0793854771812;OCT4_SOX2{dimer}:-0.0824366516934;ZFP161:-0.0851490975281;NFIL3:-0.0905183458503;PAX2:-0.0948479972557;FOXM1:-0.0954770300934;NFKB1_REL_RELA:-0.10171381072;NANOG:-0.109087498734;LEF1_TCF7_TCF7L1,2:-0.11854288672;LHX3,4:-0.130711094423;GATA6:-0.138436637889;T:-0.146029569883;NRF1:-0.162841028734;ALX4:-0.167321029291;SNAI1..3:-0.167634235669;ATF2:-0.180965683089;NR6A1:-0.187700496562;RREB1:-0.188674268902;FOXQ1:-0.197042491835;MED-1{core}:-0.204287295693;DMAP1_NCOR{1,2}_SMARC:-0.22508461534;ZNF423:-0.242289567189;ZEB1:-0.286776427382;PDX1:-0.300573773306;RXRA_VDR{dimer}:-0.306851277933;NKX2-3_NKX2-5:-0.319128757958;CDX1,2,4:-0.327061965295;ELF1,2,4:-0.343533809028;SOX17:-0.344097679386;RUNX1..3:-0.357212831188;FOXA2:-0.387705234962;SOX5:-0.392903903817;MEF2{A,B,C,D}:-0.40647568516;CEBPA,B_DDIT3:-0.410158404504;GATA4:-0.415003887912;FOXP1:-0.419553478794;POU3F1..4:-0.422292188531;RFX2..5_RFXANK_RFXAP:-0.441993445629;HOX{A6,A7,B6,B7}:-0.444702990381;SPI1:-0.472041962932;ETS1,2:-0.478531372323;TGIF1:-0.483004505737;FOX{F1,F2,J1}:-0.502912331638;SPIB:-0.520075899574;FOXP3:-0.531252638829;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.550298392783;RORA:-0.566653923923;FOXL1:-0.650898081843;TFAP4:-0.666726071516;ATF5_CREB3:-0.675177613921;ALX1:-0.688502091727;NANOG{mouse}:-0.689225718158;AHR_ARNT_ARNT2:-0.69539039829;RBPJ:-0.706359922987;PBX1:-0.70641847869;CUX2:-0.722105638773;FOXN1:-0.733880679862;YY1:-0.74528683341;GFI1:-0.753945653425;HES1:-0.779731642017;BPTF:-0.833579129012;NFY{A,B,C}:-0.842576611939;CREB1:-0.944524176148;PITX1..3:-0.969894899795;PAX3,7:-0.985581564881;VSX1,2:-1.03890181255;IKZF2:-1.05772640261;SOX{8,9,10}:-1.10057009171;ATF4:-1.12629662839;E2F1..5:-1.16493163751;NR5A1,2:-1.18750417781;POU5F1:-1.29427728249;TFDP1:-1.32890822969;POU2F1..3:-1.4744579208;BREu{core}:-1.52024608141;MYB:-1.74954007444;PAX8:-1.78025858732
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11247-116E5;search_select_hide=table117:FF:11247-116E5
}}
}}

Latest revision as of 16:27, 3 June 2020

Name:Mesothelial Cells, donor1
Species:Human (Homo sapiens)
Library ID:CNhs10850
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuemesothelium
dev stage45 years old adult
sexfemale
age45
cell typemesothelial cell
cell lineNA
companyZenbio
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberN/A
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004790
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs10850 CAGE DRX008363 DRR009235
Accession ID Hg19

Library idBAMCTSS
CNhs10850 DRZ000660 DRZ002045
Accession ID Hg38

Library idBAMCTSS
CNhs10850 DRZ012010 DRZ013395
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload
HumanCAGEScan Download raw sequence, BAM & CTSS

Library id3prime-FASTQ5prime-FASTQBAMCTSS
NCig10044downloaddownloaddownloaddownload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00004790
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10008.CAGATC sRNA-Seq DRX037113 DRR041479
Accession ID Hg19

Library idBAMCTSS
SRhi10008.CAGATC DRZ007121


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.411
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.113
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.0365
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.128
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.00652
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0.946
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-1.015
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-0.0522
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.0372
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.619
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.175
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.371
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.114
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic1.085
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.28
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.28
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10850

Jaspar motifP-value
MA0002.20.44
MA0003.10.62
MA0004.10.276
MA0006.10.0205
MA0007.10.632
MA0009.10.333
MA0014.10.516
MA0017.10.362
MA0018.23.14956e-6
MA0019.10.157
MA0024.12.67172e-14
MA0025.10.16
MA0027.10.573
MA0028.10.432
MA0029.10.0715
MA0030.10.698
MA0031.10.932
MA0035.20.028
MA0038.10.0824
MA0039.20.866
MA0040.10.244
MA0041.10.217
MA0042.10.304
MA0043.10.00531
MA0046.10.456
MA0047.20.179
MA0048.10.987
MA0050.10.928
MA0051.10.13
MA0052.10.00925
MA0055.10.834
MA0057.10.571
MA0058.10.399
MA0059.10.266
MA0060.18.56128e-8
MA0061.11
MA0062.20.0169
MA0065.20.435
MA0066.10.512
MA0067.10.0673
MA0068.10.6
MA0069.10.52
MA0070.10.693
MA0071.10.906
MA0072.10.72
MA0073.10.857
MA0074.10.849
MA0076.10.769
MA0077.10.483
MA0078.10.993
MA0079.20.322
MA0080.22.11909e-8
MA0081.15.36379e-4
MA0083.10.959
MA0084.10.632
MA0087.10.801
MA0088.10.329
MA0090.17.12042e-6
MA0091.10.41
MA0092.10.22
MA0093.10.414
MA0099.21.16287e-7
MA0100.10.00112
MA0101.10.795
MA0102.20.747
MA0103.10.616
MA0104.20.0167
MA0105.10.495
MA0106.10.254
MA0107.10.527
MA0108.20.569
MA0111.10.121
MA0112.20.875
MA0113.10.459
MA0114.10.811
MA0115.10.385
MA0116.10.0422
MA0117.10.157
MA0119.10.77
MA0122.10.424
MA0124.10.144
MA0125.10.877
MA0131.10.192
MA0135.10.0526
MA0136.11.65695e-8
MA0137.20.661
MA0138.20.106
MA0139.10.89
MA0140.10.4
MA0141.10.397
MA0142.10.456
MA0143.10.0851
MA0144.10.872
MA0145.10.0836
MA0146.10.888
MA0147.10.00292
MA0148.10.861
MA0149.10.698
MA0150.10.0851
MA0152.10.273
MA0153.10.328
MA0154.10.961
MA0155.10.131
MA0156.10.00342
MA0157.10.587
MA0159.10.177
MA0160.10.369
MA0162.10.197
MA0163.10.242
MA0164.10.213
MA0258.10.482
MA0259.10.0123



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10850

Novel motifP-value
10.192
100.0061
1000.414
1010.768
1020.178
1030.405
1040.718
1050.602
1060.108
1070.064
1080.896
1090.291
110.902
1100.747
1110.00282
1120.336
1130.0655
1140.684
1150.667
1160.939
1170.145
1180.98
1190.517
120.643
1200.839
1210.953
1220.513
1230.00405
1240.73
1250.514
1260.472
1270.678
1280.0646
1290.196
130.729
1300.66
1310.02
1320.393
1330.377
1340.349
1350.325
1360.385
1370.0693
1380.967
1390.13
140.771
1400.574
1410.0329
1420.0842
1430.858
1440.539
1450.0642
1460.884
1470.149
1480.834
1490.159
150.64
1500.318
1510.503
1520.00793
1530.846
1540.676
1550.0484
1560.829
1570.748
1580.0562
1590.462
160.0516
1600.834
1610.574
1620.675
1630.0109
1640.574
1650.338
1660.932
1670.171
1680.553
1690.205
170.582
180.956
190.807
20.31
200.357
210.618
220.505
230.244
240.631
250.0484
260.445
270.398
280.5
290.856
30.767
300.112
310.618
320.104
330.663
340.736
350.575
360.041
370.256
380.643
390.323
40.116
400.336
410.563
420.712
430.822
440.722
450.171
460.385
470.624
480.804
490.243
50.781
500.94
510.869
520.336
530.138
540.346
550.0273
560.949
570.658
580.193
590.858
60.715
600.933
610.348
620.177
630.544
640.0796
650.953
660.318
670.812
680.87
690.553
70.144
700.0294
710.713
720.72
730.0681
740.118
750.896
760.7
770.0285
780.506
790.826
80.584
800.906
810.721
820.636
830.122
840.647
850.168
860.768
870.0527
880.597
890.0424
90.902
900.917
910.658
920.147
930.863
940.521
950.502
960.741
970.133
980.0235
990.153



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs10850


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000076 (squamous epithelial cell)
0000213 (lining cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000077 (mesothelial cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000099 (human mesothelial cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000222 (mesodermal cell)

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