FFCP PHASE1:Hg19::chr12:133287378..133287390,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=192111 | |EntrezGene=192111 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28763 | |HGNC=28763 | ||
|TSSclassifier=strong | |||
|UniProt=A9LN06,Q96HS1 | |UniProt=A9LN06,Q96HS1 | ||
|association_with_transcript=-2bp_to_NM_001170543,NM_001170544,NM_138575_5end | |association_with_transcript=-2bp_to_NM_001170543,NM_001170544,NM_138575_5end | ||
|cluster_id=chr12:133287378..133287390,+ | |||
|coexpression_cluster_id=C3260 | |coexpression_cluster_id=C3260 | ||
|description=CAGE_peak_3_at_PGAM5_5end | |description=CAGE_peak_3_at_PGAM5_5end | ||
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|ontology_enrichment_celltype=CL:0000066!9.24e-27!254;CL:0000548!1.62e-16!679;CL:0000004!1.62e-16!679;CL:0000255!1.62e-16!679;CL:0000012!1.00e-15!682;CL:0002321!1.19e-15!248;CL:0000220!5.78e-15!246;CL:0000063!3.97e-11!578;CL:0000223!1.98e-09!59;CL:0000003!2.33e-09!722;CL:0000076!2.02e-07!62;CL:0002076!2.57e-07!43;CL:1000449!5.36e-07!16;CL:0000144!9.86e-07!625 | |ontology_enrichment_celltype=CL:0000066!9.24e-27!254;CL:0000548!1.62e-16!679;CL:0000004!1.62e-16!679;CL:0000255!1.62e-16!679;CL:0000012!1.00e-15!682;CL:0002321!1.19e-15!248;CL:0000220!5.78e-15!246;CL:0000063!3.97e-11!578;CL:0000223!1.98e-09!59;CL:0000003!2.33e-09!722;CL:0000076!2.02e-07!62;CL:0002076!2.57e-07!43;CL:1000449!5.36e-07!16;CL:0000144!9.86e-07!625 | ||
|ontology_enrichment_celltype_v019=CL:1000449;3.00e-07;15!CL:0002681;7.51e-07;12!CL:0002584;7.51e-07;12 | |ontology_enrichment_celltype_v019=CL:1000449;3.00e-07;15!CL:0002681;7.51e-07;12!CL:0002584;7.51e-07;12 | ||
|ontology_enrichment_celltype_v019_2=CL:0000066,2.57e-24,253;CL:0002321,2.35e-13,250;CL:0000223,6.81e-10,58;CL:0002076,1.06e-07,42;CL:1000449,1.11e-07,15;CL:0002681,2.44e-07,12;CL:0002584,2.44e-07,12;CL:1000497,8.63e-07,17;CL:0002518,8.63e-07,17;CL:0000076,9.91e-07,63 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease=DOID:162!1.17e-16!235;DOID:14566!5.55e-16!239;DOID:305!5.46e-14!106;DOID:0050687!4.11e-10!143;DOID:0050686!1.07e-08!137 | |ontology_enrichment_disease=DOID:162!1.17e-16!235;DOID:14566!5.55e-16!239;DOID:305!5.46e-14!106;DOID:0050687!4.11e-10!143;DOID:0050686!1.07e-08!137 | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2=DOID:162,2.86e-14,235;DOID:14566,1.47e-13,239;DOID:305,1.61e-13,106;DOID:0050687,1.54e-09,143;DOID:0050686,6.24e-07,137 | |||
|ontology_enrichment_uberon=UBERON:0003104!9.97e-11!238;UBERON:0009142!9.97e-11!238;UBERON:0004119!3.22e-10!169;UBERON:0000925!3.22e-10!169;UBERON:0006595!3.22e-10!169;UBERON:0000077!6.25e-10!130;UBERON:0001007!1.89e-09!155;UBERON:0001555!1.89e-09!155;UBERON:0007026!1.89e-09!155;UBERON:0004921!2.91e-09!129;UBERON:0004185!2.91e-09!129;UBERON:0005177!1.14e-08!107;UBERON:0001041!1.24e-08!98;UBERON:0001048!6.17e-08!168;UBERON:0000072!1.27e-07!46;UBERON:0000466!2.15e-07!126;UBERON:0001004!3.94e-07!72;UBERON:0009569!3.95e-07!113;UBERON:0004211!5.36e-07!16;UBERON:0001285!5.36e-07!16;UBERON:0007684!5.36e-07!16;UBERON:0003220!5.36e-07!16;UBERON:0004208!5.36e-07!16;UBERON:0000464!9.27e-07!104 | |ontology_enrichment_uberon=UBERON:0003104!9.97e-11!238;UBERON:0009142!9.97e-11!238;UBERON:0004119!3.22e-10!169;UBERON:0000925!3.22e-10!169;UBERON:0006595!3.22e-10!169;UBERON:0000077!6.25e-10!130;UBERON:0001007!1.89e-09!155;UBERON:0001555!1.89e-09!155;UBERON:0007026!1.89e-09!155;UBERON:0004921!2.91e-09!129;UBERON:0004185!2.91e-09!129;UBERON:0005177!1.14e-08!107;UBERON:0001041!1.24e-08!98;UBERON:0001048!6.17e-08!168;UBERON:0000072!1.27e-07!46;UBERON:0000466!2.15e-07!126;UBERON:0001004!3.94e-07!72;UBERON:0009569!3.95e-07!113;UBERON:0004211!5.36e-07!16;UBERON:0001285!5.36e-07!16;UBERON:0007684!5.36e-07!16;UBERON:0003220!5.36e-07!16;UBERON:0004208!5.36e-07!16;UBERON:0000464!9.27e-07!104 | ||
|ontology_enrichment_uberon_v019=UBERON:0006555;3.00e-07;15!UBERON:0004819;3.00e-07;15!UBERON:0001285;3.00e-07;15!UBERON:0007684;3.00e-07;15!UBERON:0001851;3.47e-07;15!UBERON:0002113;7.34e-07;24!UBERON:0011143;7.34e-07;24!UBERON:0001225;7.51e-07;12!UBERON:0008987;7.51e-07;12 | |ontology_enrichment_uberon_v019=UBERON:0006555;3.00e-07;15!UBERON:0004819;3.00e-07;15!UBERON:0001285;3.00e-07;15!UBERON:0007684;3.00e-07;15!UBERON:0001851;3.47e-07;15!UBERON:0002113;7.34e-07;24!UBERON:0011143;7.34e-07;24!UBERON:0001225;7.51e-07;12!UBERON:0008987;7.51e-07;12 | ||
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| ||
|short_description=p3@PGAM5 | |short_description=p3@PGAM5 | ||
}} | }} |
Latest revision as of 11:16, 17 September 2015
Short description: | p3@PGAM5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_PGAM5_5end |
Coexpression cluster: | C3260_Alveolar_Renal_hepatoblastoma_Keratinocyte_Bronchial_Endothelial_granulocyte |
Association with transcript: | -2bp_to_NM_001170543, NM_001170544, NM_138575_5end |
EntrezGene: | PGAM5 |
HGNC: | 28763 |
UniProt: | A9LN06Q96HS1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 2.57e-24 | 253 |
embryonic cell | 2.35e-13 | 250 |
endodermal cell | 6.81e-10 | 58 |
endo-epithelial cell | 1.06e-07 | 42 |
epithelial cell of nephron | 1.11e-07 | 15 |
kidney cortical cell | 2.44e-07 | 12 |
renal cortical epithelial cell | 2.44e-07 | 12 |
kidney cell | 8.63e-07 | 17 |
kidney epithelial cell | 8.63e-07 | 17 |
squamous epithelial cell | 9.91e-07 | 63 |
Ontology term | p-value | n |
---|---|---|
trunk region element | 2.02e-10 | 101 |
subdivision of digestive tract | 7.33e-08 | 118 |
trunk | 9.32e-08 | 199 |
foregut | 1.03e-07 | 87 |
nephron epithelium | 1.11e-07 | 15 |
renal tubule | 1.11e-07 | 15 |
nephron tubule | 1.11e-07 | 15 |
nephron | 1.11e-07 | 15 |
uriniferous tubule | 1.11e-07 | 15 |
nephrogenic mesenchyme | 1.11e-07 | 15 |
cortex | 1.11e-07 | 15 |
endoderm-derived structure | 1.20e-07 | 160 |
endoderm | 1.20e-07 | 160 |
presumptive endoderm | 1.20e-07 | 160 |
subdivision of trunk | 1.52e-07 | 112 |
cortex of kidney | 2.44e-07 | 12 |
renal parenchyma | 2.44e-07 | 12 |
digestive system | 2.62e-07 | 145 |
digestive tract | 2.62e-07 | 145 |
primitive gut | 2.62e-07 | 145 |
renal system | 4.38e-07 | 48 |
excretory tube | 8.91e-07 | 16 |
kidney epithelium | 8.91e-07 | 16 |
urinary system structure | 9.49e-07 | 47 |
Ontology term | p-value | n |
---|---|---|
cancer | 2.86e-14 | 235 |
disease of cellular proliferation | 1.47e-13 | 239 |
carcinoma | 1.61e-13 | 106 |
cell type cancer | 1.54e-09 | 143 |
organ system cancer | 6.24e-07 | 137 |