FFCP PHASE1:Hg19::chr12:105759611..105759626,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr12:105759611..105759626,- | |||
|description=CAGE_peak_at_chr12:105759611..105759626,- | |description=CAGE_peak_at_chr12:105759611..105759626,- | ||
|id=chr12:105759611..105759626,- | |id=chr12:105759611..105759626,- | ||
|ontology_enrichment_celltype=CL:0000055!1.02e-13!180;CL:0000548!1.15e-11!679;CL:0000004!1.15e-11!679;CL:0000255!1.15e-11!679;CL:0000012!4.09e-11!682;CL:0000057!1.61e-10!75;CL:0000144!6.01e-10!625;CL:0002371!8.28e-10!591;CL:0000192!5.21e-09!42;CL:0000514!5.21e-09!42;CL:0002620!1.44e-08!23;CL:1000497!1.95e-08!18;CL:0002518!1.95e-08!18;CL:0000359!2.91e-08!32;CL:0000003!2.92e-08!722;CL:0000680!5.22e-08!57;CL:0000056!5.22e-08!57;CL:0000355!5.22e-08!57;CL:0000183!9.26e-08!59;CL:0000222!1.38e-07!119;CL:0000220!1.97e-07!246;CL:0002321!2.84e-07!248;CL:1000449!2.96e-07!16;CL:0000187!4.03e-07!54 | |ontology_enrichment_celltype=CL:0000055!1.02e-13!180;CL:0000548!1.15e-11!679;CL:0000004!1.15e-11!679;CL:0000255!1.15e-11!679;CL:0000012!4.09e-11!682;CL:0000057!1.61e-10!75;CL:0000144!6.01e-10!625;CL:0002371!8.28e-10!591;CL:0000192!5.21e-09!42;CL:0000514!5.21e-09!42;CL:0002620!1.44e-08!23;CL:1000497!1.95e-08!18;CL:0002518!1.95e-08!18;CL:0000359!2.91e-08!32;CL:0000003!2.92e-08!722;CL:0000680!5.22e-08!57;CL:0000056!5.22e-08!57;CL:0000355!5.22e-08!57;CL:0000183!9.26e-08!59;CL:0000222!1.38e-07!119;CL:0000220!1.97e-07!246;CL:0002321!2.84e-07!248;CL:1000449!2.96e-07!16;CL:0000187!4.03e-07!54 | ||
|ontology_enrichment_celltype_v019=CL:1000497;2.71e-19;17!CL:0002518;2.71e-19;17!CL:1000507;3.54e-17;10!CL:1000494;3.54e-17;10!CL:1000449;5.48e-16;15!CL:0002681;3.61e-11;12!CL:0002584;3.61e-11;12!CL:0002620;1.06e-09;23!CL:0000239;2.21e-08;3!CL:1000615;2.21e-08;3!CL:0002306;2.21e-08;3!CL:0002541;2.71e-07;3 | |ontology_enrichment_celltype_v019=CL:1000497;2.71e-19;17!CL:0002518;2.71e-19;17!CL:1000507;3.54e-17;10!CL:1000494;3.54e-17;10!CL:1000449;5.48e-16;15!CL:0002681;3.61e-11;12!CL:0002584;3.61e-11;12!CL:0002620;1.06e-09;23!CL:0000239;2.21e-08;3!CL:1000615;2.21e-08;3!CL:0002306;2.21e-08;3!CL:0002541;2.71e-07;3 | ||
|ontology_enrichment_celltype_v019_2=CL:1000497,2.48e-19,17;CL:0002518,2.48e-19,17;CL:1000507,5.48e-17,10;CL:1000494,5.48e-17,10;CL:1000449,6.99e-16,15;CL:0002681,7.40e-11,12;CL:0002584,7.40e-11,12;CL:0002620,6.75e-10,23;CL:0000239,1.99e-08,3;CL:1000615,1.99e-08,3;CL:0002306,1.99e-08,3;CL:0000057,2.61e-08,76;CL:0002541,2.62e-07,3 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon_v019=UBERON:0004211;3.54e-17;10!UBERON:0009773;3.54e-17;10!UBERON:0001231;3.54e-17;10!UBERON:0004810;3.54e-17;10!UBERON:0006555;5.48e-16;15!UBERON:0004819;5.48e-16;15!UBERON:0001285;5.48e-16;15!UBERON:0007684;5.48e-16;15!UBERON:0006554;7.07e-13;30!UBERON:0001008;7.07e-13;30!UBERON:0002113;1.08e-12;24!UBERON:0011143;1.08e-12;24!UBERON:0001225;3.61e-11;12!UBERON:0008987;3.61e-11;12!UBERON:0000353;8.62e-11;15!UBERON:0000489;5.94e-10;29!UBERON:0001851;1.29e-08;15!UBERON:0006853;2.21e-08;3!UBERON:0007685;2.21e-08;3!UBERON:0004134;2.21e-08;3!UBERON:0005631;1.68e-07;10!UBERON:0000158;1.68e-07;10!UBERON:0003124;2.71e-07;3!UBERON:0000920;2.71e-07;3 | |ontology_enrichment_uberon_v019=UBERON:0004211;3.54e-17;10!UBERON:0009773;3.54e-17;10!UBERON:0001231;3.54e-17;10!UBERON:0004810;3.54e-17;10!UBERON:0006555;5.48e-16;15!UBERON:0004819;5.48e-16;15!UBERON:0001285;5.48e-16;15!UBERON:0007684;5.48e-16;15!UBERON:0006554;7.07e-13;30!UBERON:0001008;7.07e-13;30!UBERON:0002113;1.08e-12;24!UBERON:0011143;1.08e-12;24!UBERON:0001225;3.61e-11;12!UBERON:0008987;3.61e-11;12!UBERON:0000353;8.62e-11;15!UBERON:0000489;5.94e-10;29!UBERON:0001851;1.29e-08;15!UBERON:0006853;2.21e-08;3!UBERON:0007685;2.21e-08;3!UBERON:0004134;2.21e-08;3!UBERON:0005631;1.68e-07;10!UBERON:0000158;1.68e-07;10!UBERON:0003124;2.71e-07;3!UBERON:0000920;2.71e-07;3 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0004810,5.48e-17,10;UBERON:0004211,6.99e-16,15;UBERON:0009773,6.99e-16,15;UBERON:0001231,6.99e-16,15;UBERON:0001285,6.99e-16,15;UBERON:0007684,6.99e-16,15;UBERON:0004208,6.99e-16,15;UBERON:0006555,1.01e-14,16;UBERON:0004819,1.01e-14,16;UBERON:0002113,1.72e-11,26;UBERON:0003918,1.72e-11,26;UBERON:0011143,1.72e-11,26;UBERON:0005095,1.72e-11,26;UBERON:0007687,1.72e-11,26;UBERON:0001225,7.40e-11,12;UBERON:0008987,7.40e-11,12;UBERON:0000353,1.65e-10,15;UBERON:0000489,3.94e-09,31;UBERON:0006853,1.99e-08,3;UBERON:0007685,1.99e-08,3;UBERON:0004134,1.99e-08,3;UBERON:0001851,2.23e-08,15;UBERON:0003104,6.01e-08,160;UBERON:0009142,6.01e-08,160;UBERON:0006554,6.72e-08,47;UBERON:0001008,1.17e-07,48;UBERON:0007503,1.77e-07,78;UBERON:0000920,2.62e-07,3 | |||
|phase1_expression=1.63510541343501,0.214100523890983,0,3.00219895059391,0.446961094427288,0.872338524100369,0,1.26343974685366,0,0.737201809504527,1.39560233594486,1.52908960491121,0.527533956456907,0.247532705920093,0,1.34465029290355,0.602694528023977,0,0.487932798790507,0,0.204000691244253,0.313454721478088,0.572471974262113,0.410623275218653,0.502170558379211,0.534893840235659,0.246301768349837,0.236132343941038,0,0,0,0,0.30120591877825,0.369754010166788,0.154934401160603,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196709770113833,0,0,0,0,0,0,0.445641827540694,0,0.221533894583621,0.541607727530031,0.384273959177026,0.260118695119756,0.328875809207352,0.276350017785848,0,0,0,0,0,0,0,0,0,0,0,0,0.255973222308837,0,0,0,0.201606743224732,0,0.144824403882799,0,0,0,1.80719576192283,0.50133791063589,0.579386075843295,0,0.486634870302636,0,0.221729397462564,0.087834785693126,0.0654895377488563,0.364295288292542,0.370784442784429,0,0,0,2.8618874916641,0.571994910780128,0.371457501329565,0.596287222100115,0,0,0,0.419499436209906,0.550236083880135,0.208994966536811,0,0,0,0.805658634218294,0,0,0,0.81014194788176,0.267899184852239,0.44905874525234,0.112611480483322,0,0,0,0,0,0.436094052142534,0.496971951695318,1.01304409331664,0.264818361626438,0.286836620748814,0.709336764396714,0,3.20246987189115,0.49333509683432,0,0.134710672069688,0,0.151357427644931,0,0.70296429550139,0.312160076830321,0.570471821544449,1.79338416662161,1.17434498643765,1.78060238804945,2.38766371393822,0.204154171254893,0.61417158655884,0.103325781175765,0,0.989067717114227,0,0,2.02003336744879,1.37630371859161,0.554128230968366,1.75591048352335,1.22595118319608,0.300476117813194,0.907457465280168,0.358779271377724,2.13557388818567,2.33125091275518,0.900273288253207,0.721367704669072,0.515281080091258,2.23340227597908,0.506328996723799,1.46155507741798,0,2.30124746605748,0.484938170456436,0.355009592516614,1.81353776809752,2.03472710772585,0.966304265816484,0.545492241181669,0.573609190778008,0.121973706129595,0,0,0.10366105501537,0,0.36497735907583,0,1.28648187638577,0,0.464367928031979,0.721879481669586,0,0,0,0.110293972732394,0,0,0.134831308160164,0,0,0,1.40241773803446,0.4115740113314,0,0,0,0,0,0.122988438543114,0.171567810298526,0.439001141634502,0,0.703702806881416,0,0.651616610620649,3.11980435583874,1.44331342025273,0.115930404975077,0.234817388471643,0.288732895522148,0.462985512576611,0,0,0,0,0,0,0,0.671928512795438,0.425325291727159,0.447792613514241,0.290633938513962,0,0,0.088048434013226,0,0,0.12624243342638,0.063497894292169,0,0,0,0,0,0,0,0,0.1466765716419,0.387815147273333,0,0.845302752556,1.86156681609409,3.12022310734098,1.02882949704857,0,0.266422179016099,0.142977993658148,0,0,0.977208552881205,0.355391948742546,0,1.50719688529793,0,0.399891964728228,0,0,0,1.4377491329495,0,0,1.73737568001095,0.205476322550383,1.43248770591916,0.784596007954691,0,0.646882724578552,0.513372145118994,0.508189248444927,0,0,0.167516265334349,0,0,0,0,0.12269149171914,0,0.271265023699736,0.623912584592421,2.49800584316026,0.315404830067869,0.35142424497814,0,0,0,0.664225598535437,0.737476674166813,1.82455590382974,0.391602314925481,0,0.206768026122887,0,0.106727557803444,0.606255142892519,0,0.30239029332968,0,0.153461973288062,0.280660094433074,0.128139149255701,0,0.64341568457443,1.48418066444991,0.308419387605311,0.887808626565635,0.164254312027618,0,1.16210378459959,0.725156697549733,0.200506470303285,0.184161977871793,0.803701137152247,0.728364672026868,0.524497659837696,0.902399225814824,3.08061348417659,1.56869953835371,1.46139224653261,1.68882606228601,0,0.340187410553031,0.647747748306418,1.54227252690289,1.08378575017541,1.00337954770971,3.3133915495855,2.49322802678617,3.35812132083267,0,0,0.512900250232778,0.656029291399411,0,0,0,0.082509499920588,0,0.650060246036521,0,0,0.154048617114644,0.460511024178389,0.964856007391714,0,0.435050081742686,0.426133137080504,0.0890320356467374,0.165284915360978,0.384380134730212,0.127612712494584,0,0.929691098594572,0,3.485186350803,0.616067160352178,0.532306030317022,1.73986598415015,0.9266210955196,0.715624433709956,0,0.316379424718726,0.762520775695299,0.255897791311334,0,0.636406495851874,1.56989728039846,0.539617372749944,0.823611089208164,0.235624804691373,0.404364963146632,0,0.421258456238981,0,0.487426979262569,0,0.682499557039929,0.141405431953713,3.39024349860728,1.65409603063837,0.66343897524122,0.876901770507525,0,1.31178950409327,1.62328301570163,1.239293992399,1.12678241012897,0.430234056612155,0.392996164052485,0.7133421029625,1.06428319221179,1.05553817648832,0.987884678879706,0,2.44954304171488,0.384888450902048,0,0,0,0.43050537267123,1.68471475667626,0,1.1486170010348,0,0,0,0.238231775457789,0,0,0.540031437238115,0.79312517629427,0.320472213382419,0,0,0,0.144269212976445,0.0711418433484141,0.159426272728822,0.199579371432817,0.383010740264733,0.211673582723883,0,0,0,0,0,0,0.1605880751037,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| ||
|short_description=p@chr12:105759611..105759626,- | |short_description=p@chr12:105759611..105759626,- | ||
}} | }} |
Latest revision as of 04:23, 24 July 2015
Short description: | p@chr12:105759611..105759626, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr12:105759611..105759626, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
kidney cell | 2.48e-19 | 17 |
kidney epithelial cell | 2.48e-19 | 17 |
kidney tubule cell | 5.48e-17 | 10 |
nephron tubule epithelial cell | 5.48e-17 | 10 |
epithelial cell of nephron | 6.99e-16 | 15 |
kidney cortical cell | 7.40e-11 | 12 |
renal cortical epithelial cell | 7.40e-11 | 12 |
skin fibroblast | 6.75e-10 | 23 |
brush border epithelial cell | 1.99e-08 | 3 |
kidney cortex tubule cell | 1.99e-08 | 3 |
epithelial cell of proximal tubule | 1.99e-08 | 3 |
fibroblast | 2.61e-08 | 76 |
chorionic membrane mesenchymal stem cell | 2.62e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
nephron tubule epithelium | 5.48e-17 | 10 |
nephron epithelium | 6.99e-16 | 15 |
renal tubule | 6.99e-16 | 15 |
nephron tubule | 6.99e-16 | 15 |
nephron | 6.99e-16 | 15 |
uriniferous tubule | 6.99e-16 | 15 |
nephrogenic mesenchyme | 6.99e-16 | 15 |
excretory tube | 1.01e-14 | 16 |
kidney epithelium | 1.01e-14 | 16 |
kidney | 1.72e-11 | 26 |
kidney mesenchyme | 1.72e-11 | 26 |
upper urinary tract | 1.72e-11 | 26 |
kidney rudiment | 1.72e-11 | 26 |
kidney field | 1.72e-11 | 26 |
cortex of kidney | 7.40e-11 | 12 |
renal parenchyma | 7.40e-11 | 12 |
parenchyma | 1.65e-10 | 15 |
cavitated compound organ | 3.94e-09 | 31 |
renal cortex tubule | 1.99e-08 | 3 |
region of nephron tubule | 1.99e-08 | 3 |
proximal tubule | 1.99e-08 | 3 |
cortex | 2.23e-08 | 15 |
mesenchyme | 6.01e-08 | 160 |
entire embryonic mesenchyme | 6.01e-08 | 160 |
urinary system structure | 6.72e-08 | 47 |
renal system | 1.17e-07 | 48 |
epithelial vesicle | 1.77e-07 | 78 |
egg chorion | 2.62e-07 | 3 |