FFCP PHASE1:Hg19::chr8:127569936..127570038,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=157638 | |EntrezGene=157638 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=24166 | |HGNC=24166 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-302bp_to_AB464519,HQ448021_5end | |association_with_transcript=-302bp_to_AB464519,HQ448021_5end | ||
|cluster_id=chr8:127569936..127570038,- | |||
|coexpression_cluster_id=C86 | |coexpression_cluster_id=C86 | ||
|description=CAGE_peak_3_at_FAM84B_5end | |description=CAGE_peak_3_at_FAM84B_5end | ||
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|ontology_enrichment_celltype=CL:0000066!3.24e-32!254;CL:0002076!5.65e-11!43;CL:0000076!9.77e-08!62;CL:0000223!6.77e-07!59 | |ontology_enrichment_celltype=CL:0000066!3.24e-32!254;CL:0002076!5.65e-11!43;CL:0000076!9.77e-08!62;CL:0000223!6.77e-07!59 | ||
|ontology_enrichment_celltype_v019=CL:0002076;1.67e-10;42!CL:1000449;2.98e-09;15!CL:0002368;3.82e-09;13!CL:0002681;1.42e-08;12!CL:0002584;1.42e-08;12!CL:1000497;1.07e-07;17!CL:0002518;1.07e-07;17!CL:0000082;1.31e-07;19!CL:1000507;3.35e-07;10!CL:1000494;3.35e-07;10!CL:0000791;6.38e-07;18!CL:0000789;6.38e-07;18!CL:0002419;6.38e-07;18 | |ontology_enrichment_celltype_v019=CL:0002076;1.67e-10;42!CL:1000449;2.98e-09;15!CL:0002368;3.82e-09;13!CL:0002681;1.42e-08;12!CL:0002584;1.42e-08;12!CL:1000497;1.07e-07;17!CL:0002518;1.07e-07;17!CL:0000082;1.31e-07;19!CL:1000507;3.35e-07;10!CL:1000494;3.35e-07;10!CL:0000791;6.38e-07;18!CL:0000789;6.38e-07;18!CL:0002419;6.38e-07;18 | ||
|ontology_enrichment_celltype_v019_2=CL:0000066,3.12e-36,253;CL:0002076,1.31e-14,42;CL:0002368,3.67e-09,13;CL:1000449,3.96e-09,15;CL:0000223,8.62e-09,58;CL:0002681,1.90e-08,12;CL:0002584,1.90e-08,12;CL:0000082,1.13e-07,19;CL:1000497,1.36e-07,17;CL:0002518,1.36e-07,17;CL:1000507,4.64e-07,10;CL:1000494,4.64e-07,10;CL:0000791,4.74e-07,18;CL:0000789,4.74e-07,18;CL:0002420,4.74e-07,18;CL:0002419,4.74e-07,18;CL:0000790,4.74e-07,18 | |||
|ontology_enrichment_development_v019=CL:0000790;6.38e-07;18 | |ontology_enrichment_development_v019=CL:0000790;6.38e-07;18 | ||
|ontology_enrichment_disease=DOID:305!4.89e-16!106;DOID:0050687!5.28e-12!143;DOID:1749!3.75e-09!14;DOID:299!2.47e-08!25 | |ontology_enrichment_disease=DOID:305!4.89e-16!106;DOID:0050687!5.28e-12!143;DOID:1749!3.75e-09!14;DOID:299!2.47e-08!25 | ||
|ontology_enrichment_disease_v019=DOID:1749;6.27e-12;14!DOID:299;9.10e-11;25!DOID:305;6.80e-07;106 | |ontology_enrichment_disease_v019=DOID:1749;6.27e-12;14!DOID:299;9.10e-11;25!DOID:305;6.80e-07;106 | ||
|ontology_enrichment_disease_v019_2=DOID:305,1.27e-19,106;DOID:0050687,1.62e-14,143;DOID:1749,6.14e-12,14;DOID:299,9.79e-11,25;DOID:162,2.17e-07,235;DOID:14566,7.89e-07,239 | |||
|ontology_enrichment_uberon=UBERON:0000464!2.88e-10!104;UBERON:0004119!2.14e-09!169;UBERON:0000925!2.14e-09!169;UBERON:0006595!2.14e-09!169;UBERON:0001008!2.53e-08!45;UBERON:0006554!3.47e-08!44;UBERON:0005153!6.14e-08!37;UBERON:0000466!1.10e-07!126;UBERON:0002113!3.89e-07!27;UBERON:0003918!3.89e-07!27;UBERON:0005095!3.89e-07!27;UBERON:0007687!3.89e-07!27;UBERON:0000058!4.23e-07!26;UBERON:0005177!7.65e-07!107;UBERON:0000080!7.85e-07!18;UBERON:0002120!7.85e-07!18;UBERON:0004875!7.85e-07!18;UBERON:0005721!7.85e-07!18;UBERON:0005754!7.85e-07!18;UBERON:0007297!7.85e-07!18;UBERON:0002048!9.56e-07!22;UBERON:0000117!9.56e-07!22;UBERON:0000171!9.56e-07!22;UBERON:0000170!9.56e-07!22;UBERON:0005597!9.56e-07!22;UBERON:0000118!9.56e-07!22 | |ontology_enrichment_uberon=UBERON:0000464!2.88e-10!104;UBERON:0004119!2.14e-09!169;UBERON:0000925!2.14e-09!169;UBERON:0006595!2.14e-09!169;UBERON:0001008!2.53e-08!45;UBERON:0006554!3.47e-08!44;UBERON:0005153!6.14e-08!37;UBERON:0000466!1.10e-07!126;UBERON:0002113!3.89e-07!27;UBERON:0003918!3.89e-07!27;UBERON:0005095!3.89e-07!27;UBERON:0007687!3.89e-07!27;UBERON:0000058!4.23e-07!26;UBERON:0005177!7.65e-07!107;UBERON:0000080!7.85e-07!18;UBERON:0002120!7.85e-07!18;UBERON:0004875!7.85e-07!18;UBERON:0005721!7.85e-07!18;UBERON:0005754!7.85e-07!18;UBERON:0007297!7.85e-07!18;UBERON:0002048!9.56e-07!22;UBERON:0000117!9.56e-07!22;UBERON:0000171!9.56e-07!22;UBERON:0000170!9.56e-07!22;UBERON:0005597!9.56e-07!22;UBERON:0000118!9.56e-07!22 | ||
|ontology_enrichment_uberon_v019=UBERON:0006554;7.52e-11;30!UBERON:0001008;7.52e-11;30!UBERON:0002113;1.26e-09;24!UBERON:0011143;1.26e-09;24!UBERON:0006555;2.98e-09;15!UBERON:0004819;2.98e-09;15!UBERON:0001285;2.98e-09;15!UBERON:0007684;2.98e-09;15!UBERON:0001225;1.42e-08;12!UBERON:0008987;1.42e-08;12!UBERON:0000489;3.23e-08;29!UBERON:0004807;3.42e-08;22!UBERON:0004802;1.31e-07;19!UBERON:0000115;1.31e-07;19!UBERON:0001851;2.90e-07;15!UBERON:0004211;3.35e-07;10!UBERON:0009773;3.35e-07;10!UBERON:0001231;3.35e-07;10!UBERON:0004810;3.35e-07;10 | |ontology_enrichment_uberon_v019=UBERON:0006554;7.52e-11;30!UBERON:0001008;7.52e-11;30!UBERON:0002113;1.26e-09;24!UBERON:0011143;1.26e-09;24!UBERON:0006555;2.98e-09;15!UBERON:0004819;2.98e-09;15!UBERON:0001285;2.98e-09;15!UBERON:0007684;2.98e-09;15!UBERON:0001225;1.42e-08;12!UBERON:0008987;1.42e-08;12!UBERON:0000489;3.23e-08;29!UBERON:0004807;3.42e-08;22!UBERON:0004802;1.31e-07;19!UBERON:0000115;1.31e-07;19!UBERON:0001851;2.90e-07;15!UBERON:0004211;3.35e-07;10!UBERON:0009773;3.35e-07;10!UBERON:0001231;3.35e-07;10!UBERON:0004810;3.35e-07;10 | ||
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| ||
|short_description=p3@FAM84B | |short_description=p3@FAM84B | ||
}} | }} |
Latest revision as of 04:22, 16 September 2015
Short description: | p3@FAM84B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_FAM84B_5end |
Coexpression cluster: | C86_colon_carcinoid_small_neuroectodermal_giant_large_neuroepithelioma |
Association with transcript: | -302bp_to_AB464519, HQ448021_5end |
EntrezGene: | FAM84B |
HGNC: | 24166 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 3.12e-36 | 253 |
endo-epithelial cell | 1.31e-14 | 42 |
respiratory epithelial cell | 3.67e-09 | 13 |
epithelial cell of nephron | 3.96e-09 | 15 |
endodermal cell | 8.62e-09 | 58 |
kidney cortical cell | 1.90e-08 | 12 |
renal cortical epithelial cell | 1.90e-08 | 12 |
epithelial cell of lung | 1.13e-07 | 19 |
kidney cell | 1.36e-07 | 17 |
kidney epithelial cell | 1.36e-07 | 17 |
kidney tubule cell | 4.64e-07 | 10 |
nephron tubule epithelial cell | 4.64e-07 | 10 |
mature alpha-beta T cell | 4.74e-07 | 18 |
alpha-beta T cell | 4.74e-07 | 18 |
immature T cell | 4.74e-07 | 18 |
mature T cell | 4.74e-07 | 18 |
immature alpha-beta T cell | 4.74e-07 | 18 |
Ontology term | p-value | n |
---|---|---|
urinary system structure | 2.08e-11 | 47 |
renal system | 5.70e-11 | 48 |
excretory tube | 1.50e-09 | 16 |
kidney epithelium | 1.50e-09 | 16 |
kidney | 2.19e-09 | 26 |
kidney mesenchyme | 2.19e-09 | 26 |
upper urinary tract | 2.19e-09 | 26 |
kidney rudiment | 2.19e-09 | 26 |
kidney field | 2.19e-09 | 26 |
nephron epithelium | 3.96e-09 | 15 |
renal tubule | 3.96e-09 | 15 |
nephron tubule | 3.96e-09 | 15 |
nephron | 3.96e-09 | 15 |
uriniferous tubule | 3.96e-09 | 15 |
nephrogenic mesenchyme | 3.96e-09 | 15 |
trunk region element | 7.00e-09 | 101 |
cortex of kidney | 1.90e-08 | 12 |
renal parenchyma | 1.90e-08 | 12 |
epithelial bud | 3.42e-08 | 37 |
cavitated compound organ | 4.15e-08 | 31 |
respiratory tract epithelium | 1.13e-07 | 19 |
lung epithelium | 1.13e-07 | 19 |
cortex | 3.81e-07 | 15 |
nephron tubule epithelium | 4.64e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.27e-19 | 106 |
cell type cancer | 1.62e-14 | 143 |
squamous cell carcinoma | 6.14e-12 | 14 |
adenocarcinoma | 9.79e-11 | 25 |
cancer | 2.17e-07 | 235 |
disease of cellular proliferation | 7.89e-07 | 239 |