FFCP PHASE1:Hg19::chr20:6819236..6819281,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr20:6819236..6819281,+ | |||
|coexpression_cluster_id=C36 | |coexpression_cluster_id=C36 | ||
|description=CAGE_peak_at_chr20:6819236..6819281,+ | |description=CAGE_peak_at_chr20:6819236..6819281,+ | ||
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|ontology_enrichment_celltype=CL:1000497!2.32e-18!18;CL:0002518!2.32e-18!18;CL:1000507!6.15e-16!12;CL:1000494!6.15e-16!12;CL:0000945!1.93e-13!24;CL:0000826!1.93e-13!24;CL:0000838!1.02e-12!52;CL:0000542!1.98e-12!53;CL:0000051!1.98e-12!53;CL:1000449!8.36e-12!16;CL:0000242!2.75e-11!2;CL:0000785!3.40e-11!2;CL:0000955!3.40e-11!2;CL:0000818!3.40e-11!2;CL:0000954!3.40e-11!2;CL:0000816!3.40e-11!2;CL:0000239!3.82e-08!3;CL:1000615!3.82e-08!3;CL:0002306!3.82e-08!3;CL:0000817!9.52e-08!3;CL:0002681!7.40e-07!13;CL:0002584!7.40e-07!13 | |ontology_enrichment_celltype=CL:1000497!2.32e-18!18;CL:0002518!2.32e-18!18;CL:1000507!6.15e-16!12;CL:1000494!6.15e-16!12;CL:0000945!1.93e-13!24;CL:0000826!1.93e-13!24;CL:0000838!1.02e-12!52;CL:0000542!1.98e-12!53;CL:0000051!1.98e-12!53;CL:1000449!8.36e-12!16;CL:0000242!2.75e-11!2;CL:0000785!3.40e-11!2;CL:0000955!3.40e-11!2;CL:0000818!3.40e-11!2;CL:0000954!3.40e-11!2;CL:0000816!3.40e-11!2;CL:0000239!3.82e-08!3;CL:1000615!3.82e-08!3;CL:0002306!3.82e-08!3;CL:0000817!9.52e-08!3;CL:0002681!7.40e-07!13;CL:0002584!7.40e-07!13 | ||
|ontology_enrichment_celltype_v019=CL:1000497;3.42e-40;17!CL:0002518;3.42e-40;17!CL:1000507;7.36e-39;10!CL:1000494;7.36e-39;10!CL:1000449;7.63e-26;15!CL:0000945;1.62e-16;24!CL:0000239;2.05e-15;3!CL:1000615;2.05e-15;3!CL:0002306;2.05e-15;3!CL:0002681;8.50e-15;12!CL:0002584;8.50e-15;12!CL:0000542;1.66e-08;53 | |ontology_enrichment_celltype_v019=CL:1000497;3.42e-40;17!CL:0002518;3.42e-40;17!CL:1000507;7.36e-39;10!CL:1000494;7.36e-39;10!CL:1000449;7.63e-26;15!CL:0000945;1.62e-16;24!CL:0000239;2.05e-15;3!CL:1000615;2.05e-15;3!CL:0002306;2.05e-15;3!CL:0002681;8.50e-15;12!CL:0002584;8.50e-15;12!CL:0000542;1.66e-08;53 | ||
|ontology_enrichment_celltype_v019_2=CL:1000497,3.25e-40,17;CL:0002518,3.25e-40,17;CL:1000507,8.70e-39,10;CL:1000494,8.70e-39,10;CL:1000449,8.52e-26,15;CL:0000945,1.71e-16,24;CL:0000826,1.71e-16,24;CL:0000239,2.76e-15,3;CL:1000615,2.76e-15,3;CL:0002306,2.76e-15,3;CL:0002681,9.83e-15,12;CL:0002584,9.83e-15,12;CL:0000838,6.20e-13,52;CL:0000542,1.13e-12,53;CL:0000051,1.13e-12,53 | |||
|ontology_enrichment_development_v019=CL:0000051;1.66e-08;53 | |ontology_enrichment_development_v019=CL:0000051;1.66e-08;53 | ||
|ontology_enrichment_disease=DOID:0060058!4.09e-19!10 | |ontology_enrichment_disease=DOID:0060058!4.09e-19!10 | ||
|ontology_enrichment_disease_v019=DOID:0060058;5.57e-18;10!DOID:2355;3.44e-12;1 | |ontology_enrichment_disease_v019=DOID:0060058;5.57e-18;10!DOID:2355;3.44e-12;1 | ||
|ontology_enrichment_disease_v019_2=DOID:0060058,6.08e-18,10;DOID:2355,4.31e-12,1 | |||
|ontology_enrichment_uberon=UBERON:0009773!6.15e-16!12;UBERON:0001231!6.15e-16!12;UBERON:0004810!6.15e-16!12;UBERON:0002113!6.58e-15!27;UBERON:0003918!6.58e-15!27;UBERON:0005095!6.58e-15!27;UBERON:0007687!6.58e-15!27;UBERON:0000489!2.47e-12!32;UBERON:0004211!8.36e-12!16;UBERON:0001285!8.36e-12!16;UBERON:0007684!8.36e-12!16;UBERON:0003220!8.36e-12!16;UBERON:0004208!8.36e-12!16;UBERON:0006555!4.49e-11!17;UBERON:0005103!4.49e-11!17;UBERON:0000083!4.49e-11!17;UBERON:0009201!4.49e-11!17;UBERON:0004819!4.49e-11!17;UBERON:0006553!4.49e-11!17;UBERON:0003074!4.49e-11!17;UBERON:0003060!4.49e-11!17;UBERON:0000080!2.00e-10!18;UBERON:0002120!2.00e-10!18;UBERON:0004875!2.00e-10!18;UBERON:0005721!2.00e-10!18;UBERON:0005754!2.00e-10!18;UBERON:0007297!2.00e-10!18;UBERON:0004876!2.54e-09!20;UBERON:0003887!7.56e-09!21;UBERON:0006554!1.51e-08!44;UBERON:0001008!2.52e-08!45;UBERON:0006853!3.82e-08!3;UBERON:0007685!3.82e-08!3;UBERON:0004134!3.82e-08!3;UBERON:0000058!5.01e-07!26;UBERON:0001225!7.40e-07!13;UBERON:0008987!7.40e-07!13 | |ontology_enrichment_uberon=UBERON:0009773!6.15e-16!12;UBERON:0001231!6.15e-16!12;UBERON:0004810!6.15e-16!12;UBERON:0002113!6.58e-15!27;UBERON:0003918!6.58e-15!27;UBERON:0005095!6.58e-15!27;UBERON:0007687!6.58e-15!27;UBERON:0000489!2.47e-12!32;UBERON:0004211!8.36e-12!16;UBERON:0001285!8.36e-12!16;UBERON:0007684!8.36e-12!16;UBERON:0003220!8.36e-12!16;UBERON:0004208!8.36e-12!16;UBERON:0006555!4.49e-11!17;UBERON:0005103!4.49e-11!17;UBERON:0000083!4.49e-11!17;UBERON:0009201!4.49e-11!17;UBERON:0004819!4.49e-11!17;UBERON:0006553!4.49e-11!17;UBERON:0003074!4.49e-11!17;UBERON:0003060!4.49e-11!17;UBERON:0000080!2.00e-10!18;UBERON:0002120!2.00e-10!18;UBERON:0004875!2.00e-10!18;UBERON:0005721!2.00e-10!18;UBERON:0005754!2.00e-10!18;UBERON:0007297!2.00e-10!18;UBERON:0004876!2.54e-09!20;UBERON:0003887!7.56e-09!21;UBERON:0006554!1.51e-08!44;UBERON:0001008!2.52e-08!45;UBERON:0006853!3.82e-08!3;UBERON:0007685!3.82e-08!3;UBERON:0004134!3.82e-08!3;UBERON:0000058!5.01e-07!26;UBERON:0001225!7.40e-07!13;UBERON:0008987!7.40e-07!13 | ||
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|short_description=p@chr20:6819236..6819281,+ | |short_description=p@chr20:6819236..6819281,+ | ||
}} | }} |
Latest revision as of 16:33, 28 July 2015
Short description: | p@chr20:6819236..6819281, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr20:6819236..6819281, + |
Coexpression cluster: | C36_B_b_splenic_plasma_xeroderma_adrenal_Burkitt |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
kidney cell | 3.25e-40 | 17 |
kidney epithelial cell | 3.25e-40 | 17 |
kidney tubule cell | 8.70e-39 | 10 |
nephron tubule epithelial cell | 8.70e-39 | 10 |
epithelial cell of nephron | 8.52e-26 | 15 |
lymphocyte of B lineage | 1.71e-16 | 24 |
pro-B cell | 1.71e-16 | 24 |
brush border epithelial cell | 2.76e-15 | 3 |
kidney cortex tubule cell | 2.76e-15 | 3 |
epithelial cell of proximal tubule | 2.76e-15 | 3 |
kidney cortical cell | 9.83e-15 | 12 |
renal cortical epithelial cell | 9.83e-15 | 12 |
lymphoid lineage restricted progenitor cell | 6.20e-13 | 52 |
lymphocyte | 1.13e-12 | 53 |
common lymphoid progenitor | 1.13e-12 | 53 |
Ontology term | p-value | n |
---|---|---|
nephron tubule epithelium | 8.70e-39 | 10 |
kidney | 4.80e-26 | 26 |
kidney mesenchyme | 4.80e-26 | 26 |
upper urinary tract | 4.80e-26 | 26 |
kidney rudiment | 4.80e-26 | 26 |
kidney field | 4.80e-26 | 26 |
nephron epithelium | 8.52e-26 | 15 |
renal tubule | 8.52e-26 | 15 |
nephron tubule | 8.52e-26 | 15 |
nephron | 8.52e-26 | 15 |
uriniferous tubule | 8.52e-26 | 15 |
nephrogenic mesenchyme | 8.52e-26 | 15 |
excretory tube | 3.61e-24 | 16 |
kidney epithelium | 3.61e-24 | 16 |
cavitated compound organ | 1.01e-21 | 31 |
renal cortex tubule | 2.76e-15 | 3 |
region of nephron tubule | 2.76e-15 | 3 |
proximal tubule | 2.76e-15 | 3 |
cortex of kidney | 9.83e-15 | 12 |
renal parenchyma | 9.83e-15 | 12 |
urinary system structure | 4.78e-14 | 47 |
renal system | 9.78e-14 | 48 |
abdomen element | 4.10e-12 | 54 |
abdominal segment element | 4.10e-12 | 54 |
cortex | 7.68e-12 | 15 |
parenchyma | 7.68e-12 | 15 |
abdominal segment of trunk | 8.15e-11 | 60 |
abdomen | 8.15e-11 | 60 |
compound organ | 1.94e-09 | 68 |