FFCP PHASE1:Hg19::chr19:18366144..18366181,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=729966,5143 | |EntrezGene=729966,5143 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8782 | |HGNC=8782 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=47bp_to_NR_036575,uc002nil.3_5end | |association_with_transcript=47bp_to_NR_036575,uc002nil.3_5end | ||
|cluster_id=chr19:18366144..18366181,- | |||
|coexpression_cluster_id=C3544 | |coexpression_cluster_id=C3544 | ||
|description=CAGE_peak_1_at_PDE4C_5end | |description=CAGE_peak_1_at_PDE4C_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0002076!1.06e-10!43;CL:0002368!9.84e-09!13;CL:0000223!1.42e-07!59;CL:0000068!5.94e-07!3;CL:0000069!5.94e-07!3;CL:0000307!5.94e-07!3;CL:0000377!5.94e-07!3 | |ontology_enrichment_celltype=CL:0002076!1.06e-10!43;CL:0002368!9.84e-09!13;CL:0000223!1.42e-07!59;CL:0000068!5.94e-07!3;CL:0000069!5.94e-07!3;CL:0000307!5.94e-07!3;CL:0000377!5.94e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0002178;1.37e-07;3!CL:0000239;1.51e-07;3!CL:1000615;1.51e-07;3!CL:0002306;1.51e-07;3 | |ontology_enrichment_celltype_v019=CL:0002178;1.37e-07;3!CL:0000239;1.51e-07;3!CL:1000615;1.51e-07;3!CL:0002306;1.51e-07;3 | ||
|ontology_enrichment_celltype_v019_2=CL:0002178,1.35e-07,3;CL:0000239,1.44e-07,3;CL:1000615,1.44e-07,3;CL:0002306,1.44e-07,3 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease=DOID:299!5.44e-07!25 | |ontology_enrichment_disease=DOID:299!5.44e-07!25 | ||
|ontology_enrichment_disease_v019=DOID:299;9.94e-12;25!DOID:3493;4.87e-11;2 | |ontology_enrichment_disease_v019=DOID:299;9.94e-12;25!DOID:3493;4.87e-11;2 | ||
|ontology_enrichment_disease_v019_2=DOID:299,1.04e-11,25;DOID:3493,4.75e-11,2 | |||
|ontology_enrichment_uberon=UBERON:0004119!3.39e-22!169;UBERON:0000925!3.39e-22!169;UBERON:0006595!3.39e-22!169;UBERON:0001007!6.50e-18!155;UBERON:0001555!6.50e-18!155;UBERON:0007026!6.50e-18!155;UBERON:0004921!3.32e-15!129;UBERON:0004185!3.32e-15!129;UBERON:0000077!6.35e-12!130;UBERON:0002294!3.77e-10!7;UBERON:0001173!3.77e-10!7;UBERON:0004912!3.77e-10!7;UBERON:0000464!4.43e-09!104;UBERON:0005409!5.30e-09!35;UBERON:0000466!3.28e-08!126;UBERON:0001004!5.70e-08!72;UBERON:0003126!1.16e-07!7;UBERON:0001005!1.16e-07!7;UBERON:0001041!1.22e-07!98;UBERON:0000160!2.14e-07!27;UBERON:0002110!2.52e-07!3;UBERON:0006242!2.52e-07!3;UBERON:0000065!3.83e-07!53 | |ontology_enrichment_uberon=UBERON:0004119!3.39e-22!169;UBERON:0000925!3.39e-22!169;UBERON:0006595!3.39e-22!169;UBERON:0001007!6.50e-18!155;UBERON:0001555!6.50e-18!155;UBERON:0007026!6.50e-18!155;UBERON:0004921!3.32e-15!129;UBERON:0004185!3.32e-15!129;UBERON:0000077!6.35e-12!130;UBERON:0002294!3.77e-10!7;UBERON:0001173!3.77e-10!7;UBERON:0004912!3.77e-10!7;UBERON:0000464!4.43e-09!104;UBERON:0005409!5.30e-09!35;UBERON:0000466!3.28e-08!126;UBERON:0001004!5.70e-08!72;UBERON:0003126!1.16e-07!7;UBERON:0001005!1.16e-07!7;UBERON:0001041!1.22e-07!98;UBERON:0000160!2.14e-07!27;UBERON:0002110!2.52e-07!3;UBERON:0006242!2.52e-07!3;UBERON:0000065!3.83e-07!53 | ||
|ontology_enrichment_uberon_v019=UBERON:0005409;2.13e-20;22!UBERON:0004921;1.19e-19;33!UBERON:0000160;4.02e-13;17!UBERON:0000059;1.31e-11;11!UBERON:0003127;6.10e-11;2!UBERON:0000945;9.71e-10;5!UBERON:0010039;9.71e-10;5!UBERON:0001155;2.15e-09;9!UBERON:0001041;1.16e-08;14!UBERON:0001555;3.07e-08;54!UBERON:0006853;1.51e-07;3!UBERON:0007685;1.51e-07;3!UBERON:0004134;1.51e-07;3!UBERON:0005181;2.25e-07;35!UBERON:0005178;5.05e-07;34!UBERON:0002224;5.05e-07;34!UBERON:0003126;8.68e-07;7!UBERON:0001005;8.68e-07;7 | |ontology_enrichment_uberon_v019=UBERON:0005409;2.13e-20;22!UBERON:0004921;1.19e-19;33!UBERON:0000160;4.02e-13;17!UBERON:0000059;1.31e-11;11!UBERON:0003127;6.10e-11;2!UBERON:0000945;9.71e-10;5!UBERON:0010039;9.71e-10;5!UBERON:0001155;2.15e-09;9!UBERON:0001041;1.16e-08;14!UBERON:0001555;3.07e-08;54!UBERON:0006853;1.51e-07;3!UBERON:0007685;1.51e-07;3!UBERON:0004134;1.51e-07;3!UBERON:0005181;2.25e-07;35!UBERON:0005178;5.05e-07;34!UBERON:0002224;5.05e-07;34!UBERON:0003126;8.68e-07;7!UBERON:0001005;8.68e-07;7 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0005409,7.39e-18,25;UBERON:0004921,1.23e-13,118;UBERON:0000160,3.74e-13,17;UBERON:0000059,1.20e-11,11;UBERON:0001007,1.60e-11,145;UBERON:0001555,1.60e-11,145;UBERON:0007026,1.60e-11,145;UBERON:0003127,7.45e-11,2;UBERON:0004119,5.37e-10,160;UBERON:0000925,5.37e-10,160;UBERON:0006595,5.37e-10,160;UBERON:0001155,1.95e-09,9;UBERON:0005178,5.95e-08,34;UBERON:0002224,5.95e-08,34;UBERON:0005181,1.09e-07,35;UBERON:0006853,1.44e-07,3;UBERON:0007685,1.44e-07,3;UBERON:0004134,1.44e-07,3;UBERON:0001041,8.02e-07,87 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,6.97801167972428,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.83884244895785,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217188844705117,1.21079900526674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.261958150995425,0.728590576585084,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0,0,0.243947412259191,0,0.116193942869518,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329250856225877,0,0.301586917234893,0.185176890317059,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141775097242386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.26593811658487,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205476322550383,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.86740153530765,0,0,0,0.451199612907412,0.385076685522074,0,0,0.105551628892876,0,0,0,0,0,0,2.54876273045038,4.15538004464362,0,0,0,0,0,0,0.309123034943167,0,0,0.574265537996172,0,0,0,0,0,0,0,0,0,0,0.495854746082934,0.192190067365106,0.255225424989168,0.50578890427775,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.48111056362756,0.670302275535787,1.08890984861323,0,0.43050537267123,0,0.443430153536676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.35702702041099,0,0,0,0,1.19372242368845,0,0.307160702099232,0,0,0,0,0,1.39473591775749,2.76283915531148,0,0,0,0,0.539210106883961,0.358042349351218,0,0.394573622547734,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.61595542857974,0,0,0.987334088507493,0.108647371922008,0.31900115973192,0,0,0,0,0,0,0,0,0,0,0,14.0380215016867,0,0,31.8483817945122,9.73033209536731,28.7184168118804,0,0,0,0,0,0,0,1.17398771359254,0,0,10.8891644443797,0,0,0,0,0,0,0,0,0,0,1.04135843001079,0.195984794828755,0,0,0,0,0,0,2.32773639572207,0,1.80784592624426,0,0,0,0.977756913674015,0.561111741760736,14.9417096317547,0,26.8008175906637,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160753148465019,0,0,0,0,0,0,0.236417121897595,0.209818352539992,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,19.7348206248668,0.320362237703084,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.633936370075881,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.40171224485641,0,0,0,0,0,0,0,0,0,0,0,0.11796972334774,0,0,0,0,0,0.0752103283492573,0,8.59665412356402,0,0,0.147856086217045,0,0,0,0,0,1.64477330057155,0,0,0.511049710558381,0,0,0,0,0.0887023701626388,0,0,0,0,0,0.333694205676207,0.078493092850514,0,0,10.0447459256045,0,0,0,0,0,0,0,0,0,0,0.430227358820278,0,0,0,2.7492824225286,0,0,0,1.57040373784389,41.2082586440071,0,0,0,0.485710993059139,0.233939463462106,0.397901550322736,0,0,0,2.2644426535001,4.78479780269257,0.437119121007915,0.470317296361523,0,0,0,0,0,0,0,0,0,0,0,0,25.5617735886281,0.458729283404541,0,0,0,0,6.34832208618481,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.83821167421766,0.476128862927481,0,0,0,0.12729431655633,0.404234377916439,0.653150243690884,0.342233301085281,2.49202596153974,2.15166616178029,5.32256570473621,0,0,0,0,2.34640942403454,0,1.62758471326295,0.665756774185513,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,6.97801167972428,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.83884244895785,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217188844705117,1.21079900526674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.261958150995425,0.728590576585084,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0,0,0.243947412259191,0,0.116193942869518,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329250856225877,0,0.301586917234893,0.185176890317059,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141775097242386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.26593811658487,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205476322550383,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.86740153530765,0,0,0,0.451199612907412,0.385076685522074,0,0,0.105551628892876,0,0,0,0,0,0,2.54876273045038,4.15538004464362,0,0,0,0,0,0,0.309123034943167,0,0,0.574265537996172,0,0,0,0,0,0,0,0,0,0,0.495854746082934,0.192190067365106,0.255225424989168,0.50578890427775,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.48111056362756,0.670302275535787,1.08890984861323,0,0.43050537267123,0,0.443430153536676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.35702702041099,0,0,0,0,1.19372242368845,0,0.307160702099232,0,0,0,0,0,1.39473591775749,2.76283915531148,0,0,0,0,0.539210106883961,0.358042349351218,0,0.394573622547734,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.61595542857974,0,0,0.987334088507493,0.108647371922008,0.31900115973192,0,0,0,0,0,0,0,0,0,0,0,14.0380215016867,0,0,31.8483817945122,9.73033209536731,28.7184168118804,0,0,0,0,0,0,0,1.17398771359254,0,0,10.8891644443797,0,0,0,0,0,0,0,0,0,0,1.04135843001079,0.195984794828755,0,0,0,0,0,0,2.32773639572207,0,1.80784592624426,0,0,0,0.977756913674015,0.561111741760736,14.9417096317547,0,26.8008175906637,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160753148465019,0,0,0,0,0,0,0.236417121897595,0.209818352539992,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,19.7348206248668,0.320362237703084,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.633936370075881,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.40171224485641,0,0,0,0,0,0,0,0,0,0,0,0.11796972334774,0,0,0,0,0,0.0752103283492573,0,8.59665412356402,0,0,0.147856086217045,0,0,0,0,0,1.64477330057155,0,0,0.511049710558381,0,0,0,0,0.0887023701626388,0,0,0,0,0,0.333694205676207,0.078493092850514,0,0,10.0447459256045,0,0,0,0,0,0,0,0,0,0,0.430227358820278,0,0,0,2.7492824225286,0,0,0,1.57040373784389,41.2082586440071,0,0,0,0.485710993059139,0.233939463462106,0.397901550322736,0,0,0,2.2644426535001,4.78479780269257,0.437119121007915,0.470317296361523,0,0,0,0,0,0,0,0,0,0,0,0,25.5617735886281,0.458729283404541,0,0,0,0,6.34832208618481,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.83821167421766,0.476128862927481,0,0,0,0.12729431655633,0.404234377916439,0.653150243690884,0.342233301085281,2.49202596153974,2.15166616178029,5.32256570473621,0,0,0,0,2.34640942403454,0,1.62758471326295,0.665756774185513,0,0 | ||
|short_description=p1@PDE4C | |short_description=p1@PDE4C | ||
}} | }} |
Latest revision as of 14:51, 16 September 2015
Short description: | p1@PDE4C |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PDE4C_5end |
Coexpression cluster: | C3544_colon_signet_gastric_gall_stomach_adenocarcinoma_bile |
Association with transcript: | 47bp_to_NR_036575, uc002nil.3_5end |
EntrezGene: | 729966,5143 |
HGNC: | 8782 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of stomach | 1.35e-07 | 3 |
brush border epithelial cell | 1.44e-07 | 3 |
kidney cortex tubule cell | 1.44e-07 | 3 |
epithelial cell of proximal tubule | 1.44e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
gastrointestinal system | 7.39e-18 | 25 |
subdivision of digestive tract | 1.23e-13 | 118 |
intestine | 3.74e-13 | 17 |
large intestine | 1.20e-11 | 11 |
digestive system | 1.60e-11 | 145 |
digestive tract | 1.60e-11 | 145 |
primitive gut | 1.60e-11 | 145 |
open tracheal system trachea | 7.45e-11 | 2 |
endoderm-derived structure | 5.37e-10 | 160 |
endoderm | 5.37e-10 | 160 |
presumptive endoderm | 5.37e-10 | 160 |
colon | 1.95e-09 | 9 |
thoracic cavity element | 5.95e-08 | 34 |
thoracic cavity | 5.95e-08 | 34 |
thoracic segment organ | 1.09e-07 | 35 |
renal cortex tubule | 1.44e-07 | 3 |
region of nephron tubule | 1.44e-07 | 3 |
proximal tubule | 1.44e-07 | 3 |
foregut | 8.02e-07 | 87 |
Ontology term | p-value | n |
---|---|---|
adenocarcinoma | 1.04e-11 | 25 |
signet ring cell adenocarcinoma | 4.75e-11 | 2 |