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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005559
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005559
|accession_numbers=CAGE;DRX008280;DRR009152;DRZ000577;DRZ001962;DRZ011927;DRZ013312
|accession_numbers_RNASeq=sRNA-Seq;DRX037111;DRR041477;DRZ007119
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001637,UBERON:0000483,UBERON:0002384,UBERON:0000479,UBERON:0000055,UBERON:0004121,UBERON:0004119,UBERON:0010314,UBERON:0004111,UBERON:0004120,UBERON:0000077,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0005911,UBERON:0000477,UBERON:0000467,UBERON:0010313,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0010371,UBERON:0003509,UBERON:0007500,UBERON:0001981,UBERON:0000078,UBERON:0002049,UBERON:0010317,UBERON:0007798,UBERON:0002012,UBERON:0004535,UBERON:0004572,UBERON:0004537,UBERON:0008886,UBERON:0001009
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001637,UBERON:0000483,UBERON:0002384,UBERON:0000479,UBERON:0000055,UBERON:0004121,UBERON:0004119,UBERON:0010314,UBERON:0004111,UBERON:0004120,UBERON:0000077,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0005911,UBERON:0000477,UBERON:0000467,UBERON:0010313,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0010371,UBERON:0003509,UBERON:0007500,UBERON:0001981,UBERON:0000078,UBERON:0002049,UBERON:0010317,UBERON:0007798,UBERON:0002012,UBERON:0004535,UBERON:0004572,UBERON:0004537,UBERON:0008886,UBERON:0001009
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002557
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002557
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr8:55370487..55370503,+!p1@SOX17!1.96!89.72!SOX17;;chr7:35293685..35293718,-!p1@TBX20!1.44!26.54!TBX20;;chr6:134210243..134210257,+!p1@TCF21!1.36!22.01!TCF21;;chr4:174451370..174451387,-!p1@HAND2!1.28!18.04!HAND2;;chr8:11561684..11561751,+!p1@GATA4!1.22!15.77!GATA4;;chr12:66218255..66218304,+!p3@HMGA2!1.18!38.23!HMGA2;;chr19:46801639..46801699,+!p1@HIF3A!1.16!13.61!HIF3A;;chr12:66218836..66218888,+!p1@HMGA2!1.12!113.09!HMGA2;;chr18:19749386..19749404,+!p2@GATA6!1.09!16.11!GATA6;;chr4:174450089..174450153,-!p2@HAND2!1.08!11.00!HAND2;;chr18:19749541..19749557,+!p1@GATA6!1.07!34.14!GATA6;;chr11:61520075..61520136,+!p1@C11orf9!1.05!22.01!C11orf9;;chr3:141087393..141087426,+!p3@ZBTB38!1.03!38.79!ZBTB38;;chr5:92918919..92918942,+!p1@NR2F1!1.01!42.08!NR2F1;;chr11:46299199..46299233,+!p1@CREB3L1!0.99!46.39!CREB3L1;;chr12:66218598..66218645,+!p2@HMGA2!0.98!40.84!HMGA2;;chr12:66218183..66218209,+!p4@HMGA2!0.93!14.97!HMGA2;;chr7:19157248..19157268,-!p1@TWIST1!0.91!20.64!TWIST1;;chr6:126240380..126240430,+!p2@NCOA7!0.90!18.49!NCOA7;;chr16:86600426..86600441,+!p1@FOXC2!0.89!17.24!FOXC2;;chr12:66218212..66218244,+!p5@HMGA2!0.89!9.98!HMGA2;;chr1:170633348..170633399,+!p2@PRRX1!0.88!9.07!PRRX1;;chr5:92918956..92918969,+!p4@NR2F1!0.87!7.15!NR2F1;;chr20:30433396..30433414,-!p1@FOXS1!0.87!6.35!FOXS1;;chr3:25469724..25469773,+!p1@RARB!0.84!8.73!RARB;;chr8:37963466..37963506,+!p3@ASH2L!0.82!7.15!ASH2L;;chr11:32457075..32457095,-!p1@WT1!0.82!5.67!WT1;;chr2:19558373..19558392,-!p1@OSR1!0.81!15.99!OSR1;;chr14:62162285..62162296,+!p3@HIF1A!0.79!28.93!HIF1A;;chr6:85474299..85474324,-!p1@TBX18!0.79!9.64!TBX18;;chr5:92919375..92919438,+!p6@NR2F1!0.78!5.44!NR2F1;;chr18:53068911..53068935,-!p4@TCF4!0.75!5.33!TCF4;;chr12:66218904..66218913,+!p11@HMGA2!0.75!4.65!HMGA2;;chr8:72756063..72756125,-!p1@MSC!0.74!9.76!MSC;;chrY:21906594..21906622,-!p1@KDM5D!0.74!4.54!KDM5D;;chr7:19157043..19157088,-!p2@TWIST1!0.73!11.80!TWIST1;;chr15:57511609..57511651,+!p2@TCF12!0.73!7.83!TCF12;;chr7:1577899..1577943,+!p3@MAFK!0.73!4.31!MAFK;;chrY:2803415..2803468,+!p1@ZFY!0.73!4.31!ZFY;;chr1:151032860..151032918,+!p1@MLLT11!0.72!57.17!MLLT11;;chr14:62162258..62162269,+!p2@HIF1A!0.72!46.39!HIF1A;;chr1:170632959..170632987,+!p4@PRRX1!0.72!4.76!PRRX1;;chr21:39870339..39870443,-!p1@ERG!0.72!4.20!ERG;;chr15:67430351..67430366,+!p10@SMAD3!0.72!4.20!SMAD3;;chr6:85473156..85473210,-!p2@TBX18!0.71!5.22!TBX18;;chr1:170633262..170633285,+!p3@PRRX1!0.71!4.76!PRRX1;;chr8:72755987..72756002,-!p7@MSC!0.70!3.97!MSC;;chr1:158979872..158979898,+!p3@IFI16!0.69!13.38!IFI16;;chr1:170632285..170632309,+!p1@PRRX1!0.69!4.54!PRRX1;;chr3:25469815..25469866,+!p3@RARB!0.69!3.86!RARB;;chr11:65667884..65667895,-!p2@FOSL1!0.68!16.67!FOSL1;;chr5:92918894..92918912,+!p2@NR2F1!0.68!13.84!NR2F1;;chr8:72756023..72756055,-!p6@MSC!0.68!4.88!MSC;;chr17:1959369..1959388,+!p2@HIC1!0.67!10.78!HIC1;;chr11:46299539..46299620,+!p2@CREB3L1!0.67!6.69!CREB3L1;;chr3:168864315..168864339,-!p2@MECOM!0.67!6.47!MECOM;;chr3:141087339..141087387,+!p2@ZBTB38!0.66!42.99!ZBTB38;;chr5:92919100..92919135,+!p3@NR2F1!0.66!4.54!NR2F1;;chr18:19749517..19749531,+!p3@GATA6!0.65!6.69!GATA6;;chr8:72756267..72756296,-!p4@MSC!0.64!5.33!MSC;;chr10:94449703..94449718,+!p1@HHEX!0.63!14.41!HHEX;;chr12:66357214..66357233,+!p13@HMGA2!0.63!3.29!HMGA2;;chr8:72756667..72756736,-!p2@MSC!0.61!5.22!MSC;;chr2:231084820..231084836,-!p5@SP110!0.61!3.63!SP110;;chr20:48599506..48599526,+!p1@SNAI1!0.60!23.14!SNAI1;;chr12:66218573..66218596,+!p7@HMGA2!0.60!4.76!HMGA2;;chr6:126240356..126240379,+!p7@NCOA7!0.60!3.86!NCOA7;;chr17:3571863..3571881,-!p1@TAX1BP3!0.59!254.77!TAX1BP3;;chr6:34204921..34204939,+!p3@HMGA1!0.59!106.51!HMGA1;;chr20:42295745..42295765,+!p1@MYBL2!0.58!56.94!MYBL2;;chr6:19837592..19837621,+!p1@ID4!0.58!20.98!ID4;;chr20:42295713..42295738,+!p2@MYBL2!0.58!20.19!MYBL2;;chr15:67418047..67418093,+!p4@SMAD3!0.57!3.63!SMAD3;;chr18:19749353..19749367,+!p4@GATA6!0.57!2.72!GATA6;;chr5:92919312..92919334,+!p13@NR2F1!0.57!2.72!NR2F1;;chr12:66358080..66358094,+!p15@HMGA2!0.57!2.72!HMGA2;;chr8:106330656..106330684,+!p1@ZFPM2!0.56!8.05!ZFPM2;;chr3:25470156..25470227,+!p2@RARB!0.56!2.61!RARB;;chr12:66218923..66218934,+!p14@HMGA2!0.56!2.61!HMGA2;;chr2:208030647..208030689,-!p1@KLF7!0.55!26.43!KLF7;;chr12:66218378..66218401,+!p6@HMGA2!0.54!4.20!HMGA2;;chr20:6748325..6748352,+!p1@BMP2!0.54!3.86!BMP2;;chr14:29235961..29236008,+!p1@FOXG1!0.54!2.50!FOXG1;;chr2:239756671..239756732,+!p1@TWIST2!0.53!9.30!TWIST2;;chr16:8962202..8962222,-!p3@CARHSP1!0.53!4.88!CARHSP1;;chr15:67418119..67418162,+!p5@SMAD3!0.53!2.72!SMAD3;;chr19:13213399..13213414,-!p6@LYL1!0.53!2.38!LYL1;;chr12:80085120..80085156,-!p14@PAWR!0.53!2.38!PAWR;;chr12:81110684..81110700,+!p1@MYF5!0.53!2.38!MYF5;;chr19:47523058..47523114,+!p1@NPAS1!0.53!2.38!NPAS1;;chr20:61051039..61051057,-!p1@GATA5!0.53!2.38!GATA5;;chr1:151032922..151032951,+!p2@MLLT11!0.52!4.31!MLLT11;;chr8:72756637..72756664,-!p3@MSC!0.52!2.72!MSC;;chr1:23885981..23886002,-!p1@ID3!0.51!518.61!ID3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|ffid_belonging_in_development=CL:0000134
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|fonse_cell_line=
|fonse_cell_line=
Line 38: Line 44:
|fonse_treatment_closure=
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|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Pulmonary%2520Artery%252c%2520donor1.CNhs10878.11250-116E8.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Pulmonary%2520Artery%252c%2520donor1.CNhs10878.11250-116E8.hg38.nobarcode.ctss.bed.gz
|id=FF:11250-116E8
|id=FF:11250-116E8
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|is_a=EFO:0002091;;FF:0000068
|is_obsolete=
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|microRNAs=
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|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10008.ACAGTG.11250
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|name=Fibroblast - Pulmonary Artery, donor1
|name=Fibroblast - Pulmonary Artery, donor1
|namespace=FANTOM5
|namespace=FANTOM5
Line 46: Line 65:
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|rna_catalog_number=SC3125
Line 58: Line 80:
|rna_rin=
|rna_rin=
|rna_sample_type=total RNA
|rna_sample_type=total RNA
|rna_tube_id=116E8
|rna_tube_id=1.16E+10
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|rna_weight_ug=10
|rnaseq_library_id=SRhi10008.ACAGTG
|sample_age=
|sample_age=
|sample_category=primary cells
|sample_cell_catalog=N/A
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_line=
Line 82: Line 106:
|top_motifs=POU3F1..4:1.4953447516;NKX2-2,8:1.36135383965;HSF1,2:1.35420057609;HOX{A5,B5}:1.18518998145;HMGA1,2:1.1754778892;EN1,2:1.15267096237;CDC5L:1.11135118421;NR3C1:1.10984865588;IKZF1:1.1085723244;FOX{I1,J2}:1.09389580666;NKX3-1:0.952840031487;SRF:0.938149443661;FOXD3:0.895550531795;MYBL2:0.849630879371;TAL1_TCF{3,4,12}:0.823250191423;TLX1..3_NFIC{dimer}:0.800409970768;AIRE:0.792194498941;ONECUT1,2:0.779798127046;UFEwm:0.726921268026;NFATC1..3:0.720051774982;E2F1..5:0.694415140679;LHX3,4:0.66661545036;PAX8:0.65081213814;TFAP4:0.646959829766;FOXL1:0.633929104854;TBP:0.631185308441;XCPE1{core}:0.616360224831;ZNF384:0.614242268108;TEAD1:0.614203739396;GLI1..3:0.601007466435;HIF1A:0.577348025462;GCM1,2:0.575484534329;GTF2A1,2:0.572991895288;PAX5:0.558012818844;ADNP_IRX_SIX_ZHX:0.557634237873;NKX2-1,4:0.552829294291;EVI1:0.551076403733;ARID5B:0.547672695675;MYB:0.539069455744;HBP1_HMGB_SSRP1_UBTF:0.490664239488;LEF1_TCF7_TCF7L1,2:0.488890433593;SOX{8,9,10}:0.468269206662;HES1:0.421349573214;TFDP1:0.398396977164;TEF:0.398092178799;TP53:0.397904970245;ZIC1..3:0.388916921468;RXR{A,B,G}:0.387313879411;AR:0.385119898535;POU5F1:0.382448018208;SMAD1..7,9:0.378007786891;PAX6:0.375173041619;CRX:0.36704920154;NR6A1:0.365702483394;GFI1B:0.356560370791;ALX4:0.33098705153;bHLH_family:0.323525632929;SOX2:0.316712465311;ZNF148:0.312594690904;ZNF423:0.311097808836;GFI1:0.30778182159;NKX3-2:0.307675180492;T:0.288427495716;STAT5{A,B}:0.282175485976;TBX4,5:0.275585578831;XBP1:0.268448034899;POU1F1:0.263586616545;NFY{A,B,C}:0.256840229756;KLF4:0.249636418028;ZNF143:0.225655178017;NFIX:0.205808507159;EBF1:0.195943893151;NR5A1,2:0.190864295323;FOXQ1:0.185265405094;GATA6:0.1690760016;ELF1,2,4:0.166991215303;HOX{A4,D4}:0.163732787834;ELK1,4_GABP{A,B1}:0.156572014566;HAND1,2:0.154335517786;ZNF238:0.151830761108;CDX1,2,4:0.148016333529;NFE2L2:0.141643745075;SOX17:0.134086679927;BACH2:0.13403060491;SOX5:0.119127612092;RXRA_VDR{dimer}:0.1022064499;NFE2L1:0.101545270987;HOXA9_MEIS1:0.0864338078287;MAFB:0.0826994850765;PBX1:0.0592424694576;STAT2,4,6:0.0558394245905;FOS_FOS{B,L1}_JUN{B,D}:0.054202352723;MEF2{A,B,C,D}:0.0480466798809;GTF2I:0.0375029037042;MAZ:0.0213715400215;NFIL3:0.0117221560489;PPARG:0.0112724319047;HLF:0.00983322845724;GATA4:-0.0138593765628;IKZF2:-0.0257038274867;NHLH1,2:-0.0361384539569;HNF1A:-0.0456910535933;PRRX1,2:-0.0497799465939;FOSL2:-0.0531391866545;ATF6:-0.0586382347659;REST:-0.0634461365045;GZF1:-0.0825085452291;NFE2:-0.0858986272882;BPTF:-0.0922790822504;NRF1:-0.108548938007;JUN:-0.113451799663;HNF4A_NR2F1,2:-0.115782265657;DBP:-0.130430793985;ZBTB6:-0.142530532695;PRDM1:-0.165046346817;OCT4_SOX2{dimer}:-0.175912443571;YY1:-0.176330067981;CEBPA,B_DDIT3:-0.179444992614;NKX2-3_NKX2-5:-0.186104032197;PAX4:-0.187193464985;PAX1,9:-0.19200914308;ETS1,2:-0.195076429803;MTE{core}:-0.198552637708;FOXM1:-0.205586773921;TFCP2:-0.209203941685;RFX1:-0.21245689452;AHR_ARNT_ARNT2:-0.226580473571;RUNX1..3:-0.230902473496;TOPORS:-0.231396518772;NANOG{mouse}:-0.233420609808;HIC1:-0.237750845383;PATZ1:-0.243975612981;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.246174711843;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.25957872844;NANOG:-0.261403681504;NFKB1_REL_RELA:-0.263448993625;SPZ1:-0.270059345015;FOXA2:-0.272574654745;EP300:-0.282895975931;MTF1:-0.303081927683;POU2F1..3:-0.305107199245;SP1:-0.312837203176;HMX1:-0.316222761475;STAT1,3:-0.322283770638;SPI1:-0.331432372357;IRF7:-0.336550961228;MZF1:-0.340338007741;ZBTB16:-0.350202292921;LMO2:-0.36018420814;NKX6-1,2:-0.361151128591;TLX2:-0.369320231508;ESRRA:-0.381524440539;SPIB:-0.387669046676;ALX1:-0.407558619729;RORA:-0.412628412599;TFAP2B:-0.415696159877;VSX1,2:-0.416725178736;TGIF1:-0.431795588153;NR1H4:-0.432075779113;FOXP3:-0.434189227777;PAX3,7:-0.45367264571;CUX2:-0.472340184325;TFAP2{A,C}:-0.483662600956;FOXO1,3,4:-0.49979628599;DMAP1_NCOR{1,2}_SMARC:-0.509816695393;IRF1,2:-0.54271335593;RBPJ:-0.543375339493;PAX2:-0.54354574496;POU6F1:-0.563723547041;BREu{core}:-0.569339376412;CREB1:-0.584751309828;FOX{D1,D2}:-0.615514558668;ESR1:-0.617458850345;EGR1..3:-0.625648626054;MYFfamily:-0.627883075335;ATF4:-0.634558933057;ATF5_CREB3:-0.638550264723;ZFP161:-0.645444909261;ATF2:-0.649536483571;SNAI1..3:-0.650046924132;MED-1{core}:-0.670515297387;FOX{F1,F2,J1}:-0.695846214918;PDX1:-0.717089660124;RREB1:-0.7203772806;FOXP1:-0.726912378465;ZEB1:-0.756269766015;FOXN1:-0.777895637429;HOX{A6,A7,B6,B7}:-0.782714699133;PITX1..3:-0.783148039995;MYOD1:-0.822107061345;SREBF1,2:-0.98616822752;RFX2..5_RFXANK_RFXAP:-1.12856063441
|top_motifs=POU3F1..4:1.4953447516;NKX2-2,8:1.36135383965;HSF1,2:1.35420057609;HOX{A5,B5}:1.18518998145;HMGA1,2:1.1754778892;EN1,2:1.15267096237;CDC5L:1.11135118421;NR3C1:1.10984865588;IKZF1:1.1085723244;FOX{I1,J2}:1.09389580666;NKX3-1:0.952840031487;SRF:0.938149443661;FOXD3:0.895550531795;MYBL2:0.849630879371;TAL1_TCF{3,4,12}:0.823250191423;TLX1..3_NFIC{dimer}:0.800409970768;AIRE:0.792194498941;ONECUT1,2:0.779798127046;UFEwm:0.726921268026;NFATC1..3:0.720051774982;E2F1..5:0.694415140679;LHX3,4:0.66661545036;PAX8:0.65081213814;TFAP4:0.646959829766;FOXL1:0.633929104854;TBP:0.631185308441;XCPE1{core}:0.616360224831;ZNF384:0.614242268108;TEAD1:0.614203739396;GLI1..3:0.601007466435;HIF1A:0.577348025462;GCM1,2:0.575484534329;GTF2A1,2:0.572991895288;PAX5:0.558012818844;ADNP_IRX_SIX_ZHX:0.557634237873;NKX2-1,4:0.552829294291;EVI1:0.551076403733;ARID5B:0.547672695675;MYB:0.539069455744;HBP1_HMGB_SSRP1_UBTF:0.490664239488;LEF1_TCF7_TCF7L1,2:0.488890433593;SOX{8,9,10}:0.468269206662;HES1:0.421349573214;TFDP1:0.398396977164;TEF:0.398092178799;TP53:0.397904970245;ZIC1..3:0.388916921468;RXR{A,B,G}:0.387313879411;AR:0.385119898535;POU5F1:0.382448018208;SMAD1..7,9:0.378007786891;PAX6:0.375173041619;CRX:0.36704920154;NR6A1:0.365702483394;GFI1B:0.356560370791;ALX4:0.33098705153;bHLH_family:0.323525632929;SOX2:0.316712465311;ZNF148:0.312594690904;ZNF423:0.311097808836;GFI1:0.30778182159;NKX3-2:0.307675180492;T:0.288427495716;STAT5{A,B}:0.282175485976;TBX4,5:0.275585578831;XBP1:0.268448034899;POU1F1:0.263586616545;NFY{A,B,C}:0.256840229756;KLF4:0.249636418028;ZNF143:0.225655178017;NFIX:0.205808507159;EBF1:0.195943893151;NR5A1,2:0.190864295323;FOXQ1:0.185265405094;GATA6:0.1690760016;ELF1,2,4:0.166991215303;HOX{A4,D4}:0.163732787834;ELK1,4_GABP{A,B1}:0.156572014566;HAND1,2:0.154335517786;ZNF238:0.151830761108;CDX1,2,4:0.148016333529;NFE2L2:0.141643745075;SOX17:0.134086679927;BACH2:0.13403060491;SOX5:0.119127612092;RXRA_VDR{dimer}:0.1022064499;NFE2L1:0.101545270987;HOXA9_MEIS1:0.0864338078287;MAFB:0.0826994850765;PBX1:0.0592424694576;STAT2,4,6:0.0558394245905;FOS_FOS{B,L1}_JUN{B,D}:0.054202352723;MEF2{A,B,C,D}:0.0480466798809;GTF2I:0.0375029037042;MAZ:0.0213715400215;NFIL3:0.0117221560489;PPARG:0.0112724319047;HLF:0.00983322845724;GATA4:-0.0138593765628;IKZF2:-0.0257038274867;NHLH1,2:-0.0361384539569;HNF1A:-0.0456910535933;PRRX1,2:-0.0497799465939;FOSL2:-0.0531391866545;ATF6:-0.0586382347659;REST:-0.0634461365045;GZF1:-0.0825085452291;NFE2:-0.0858986272882;BPTF:-0.0922790822504;NRF1:-0.108548938007;JUN:-0.113451799663;HNF4A_NR2F1,2:-0.115782265657;DBP:-0.130430793985;ZBTB6:-0.142530532695;PRDM1:-0.165046346817;OCT4_SOX2{dimer}:-0.175912443571;YY1:-0.176330067981;CEBPA,B_DDIT3:-0.179444992614;NKX2-3_NKX2-5:-0.186104032197;PAX4:-0.187193464985;PAX1,9:-0.19200914308;ETS1,2:-0.195076429803;MTE{core}:-0.198552637708;FOXM1:-0.205586773921;TFCP2:-0.209203941685;RFX1:-0.21245689452;AHR_ARNT_ARNT2:-0.226580473571;RUNX1..3:-0.230902473496;TOPORS:-0.231396518772;NANOG{mouse}:-0.233420609808;HIC1:-0.237750845383;PATZ1:-0.243975612981;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.246174711843;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.25957872844;NANOG:-0.261403681504;NFKB1_REL_RELA:-0.263448993625;SPZ1:-0.270059345015;FOXA2:-0.272574654745;EP300:-0.282895975931;MTF1:-0.303081927683;POU2F1..3:-0.305107199245;SP1:-0.312837203176;HMX1:-0.316222761475;STAT1,3:-0.322283770638;SPI1:-0.331432372357;IRF7:-0.336550961228;MZF1:-0.340338007741;ZBTB16:-0.350202292921;LMO2:-0.36018420814;NKX6-1,2:-0.361151128591;TLX2:-0.369320231508;ESRRA:-0.381524440539;SPIB:-0.387669046676;ALX1:-0.407558619729;RORA:-0.412628412599;TFAP2B:-0.415696159877;VSX1,2:-0.416725178736;TGIF1:-0.431795588153;NR1H4:-0.432075779113;FOXP3:-0.434189227777;PAX3,7:-0.45367264571;CUX2:-0.472340184325;TFAP2{A,C}:-0.483662600956;FOXO1,3,4:-0.49979628599;DMAP1_NCOR{1,2}_SMARC:-0.509816695393;IRF1,2:-0.54271335593;RBPJ:-0.543375339493;PAX2:-0.54354574496;POU6F1:-0.563723547041;BREu{core}:-0.569339376412;CREB1:-0.584751309828;FOX{D1,D2}:-0.615514558668;ESR1:-0.617458850345;EGR1..3:-0.625648626054;MYFfamily:-0.627883075335;ATF4:-0.634558933057;ATF5_CREB3:-0.638550264723;ZFP161:-0.645444909261;ATF2:-0.649536483571;SNAI1..3:-0.650046924132;MED-1{core}:-0.670515297387;FOX{F1,F2,J1}:-0.695846214918;PDX1:-0.717089660124;RREB1:-0.7203772806;FOXP1:-0.726912378465;ZEB1:-0.756269766015;FOXN1:-0.777895637429;HOX{A6,A7,B6,B7}:-0.782714699133;PITX1..3:-0.783148039995;MYOD1:-0.822107061345;SREBF1,2:-0.98616822752;RFX2..5_RFXANK_RFXAP:-1.12856063441
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11250-116E8;search_select_hide=table117:FF:11250-116E8
}}
}}

Latest revision as of 16:28, 3 June 2020

Name:Fibroblast - Pulmonary Artery, donor1
Species:Human (Homo sapiens)
Library ID:CNhs10878
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuepulmonary artery
dev stageNA
sexunknown
ageNA
cell typefibroblast
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberlot:2546
catalog numberSC3125
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005559
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs10878 CAGE DRX008280 DRR009152
Accession ID Hg19

Library idBAMCTSS
CNhs10878 DRZ000577 DRZ001962
Accession ID Hg38

Library idBAMCTSS
CNhs10878 DRZ011927 DRZ013312
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005559
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10008.ACAGTG sRNA-Seq DRX037111 DRR041477
Accession ID Hg19

Library idBAMCTSS
SRhi10008.ACAGTG DRZ007119


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.129
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.368
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0.21
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.393
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.0451
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.255
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.457
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140.0467
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.0888
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.0509
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.0759
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.445
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory-8.83136e-4
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-0.0298
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.00756
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.302
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.0962
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.28
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.254
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.195
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.911
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.394
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.548
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10878

Jaspar motifP-value
MA0002.20.144
MA0003.10.755
MA0004.10.256
MA0006.10.184
MA0007.10.0247
MA0009.10.605
MA0014.10.714
MA0017.10.78
MA0018.21.10077e-4
MA0019.10.374
MA0024.10.00503
MA0025.10.168
MA0027.10.999
MA0028.10.14
MA0029.10.652
MA0030.10.0308
MA0031.10.141
MA0035.20.464
MA0038.10.623
MA0039.20.773
MA0040.10.792
MA0041.10.563
MA0042.10.783
MA0043.14.16756e-4
MA0046.10.0797
MA0047.20.713
MA0048.10.0384
MA0050.13.93189e-5
MA0051.10.0437
MA0052.10.0455
MA0055.10.00178
MA0057.10.347
MA0058.10.077
MA0059.10.188
MA0060.10.223
MA0061.10.404
MA0062.20.146
MA0065.20.963
MA0066.10.39
MA0067.10.0095
MA0068.10.508
MA0069.10.706
MA0070.10.791
MA0071.10.907
MA0072.10.498
MA0073.10.718
MA0074.10.963
MA0076.10.86
MA0077.10.348
MA0078.10.478
MA0079.20.139
MA0080.25.63426e-6
MA0081.10.211
MA0083.10.00136
MA0084.10.0162
MA0087.10.449
MA0088.10.101
MA0090.19.00202e-4
MA0091.10.284
MA0092.10.0929
MA0093.10.223
MA0099.20.0734
MA0100.10.322
MA0101.10.179
MA0102.20.0183
MA0103.16.52831e-4
MA0104.20.618
MA0105.10.529
MA0106.10.189
MA0107.10.0942
MA0108.20.00179
MA0111.10.677
MA0112.20.0137
MA0113.10.0286
MA0114.10.374
MA0115.10.0983
MA0116.10.0509
MA0117.10.662
MA0119.10.0056
MA0122.10.924
MA0124.10.896
MA0125.10.81
MA0131.10.827
MA0135.10.027
MA0136.15.39846e-4
MA0137.20.837
MA0138.20.583
MA0139.10.771
MA0140.10.0464
MA0141.10.795
MA0142.10.868
MA0143.10.439
MA0144.10.418
MA0145.10.375
MA0146.10.755
MA0147.10.973
MA0148.10.608
MA0149.10.767
MA0150.10.707
MA0152.10.0141
MA0153.10.186
MA0154.10.462
MA0155.10.579
MA0156.10.105
MA0157.10.547
MA0159.10.39
MA0160.10.13
MA0162.10.0209
MA0163.10.0291
MA0164.10.559
MA0258.10.498
MA0259.10.36



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10878

Novel motifP-value
10.234
100.521
1000.262
1010.499
1020.4
1030.113
1040.453
1050.494
1060.123
1070.0304
1080.819
1090.0541
110.299
1100.107
1110.147
1120.857
1130.124
1140.774
1150.446
1160.0902
1170.965
1180.774
1190.994
120.195
1200.178
1210.387
1220.558
1234.18901e-4
1240.412
1250.456
1260.749
1270.923
1280.78
1290.895
130.024
1300.048
1310.919
1320.619
1330.503
1340.305
1350.792
1360.199
1370.195
1380.246
1390.16
140.169
1400.983
1410.884
1420.421
1430.126
1440.516
1450.678
1460.347
1470.167
1480.181
1490.231
150.55
1500.0812
1510.952
1520.0702
1530.477
1540.435
1550.0543
1560.717
1570.0909
1580.00656
1590.154
160.0764
1600.0273
1610.922
1620.77
1630.596
1640.533
1650.825
1660.449
1670.728
1680.482
1690.098
170.476
180.502
190.0513
20.699
200.898
210.269
220.75
230.736
240.0738
250.705
260.207
270.931
280.122
290.263
30.306
300.836
310.864
321.52994e-5
330.0579
340.866
350.291
360.552
370.0762
380.9
390.0716
40.822
400.47
410.67
420.378
430.886
440.165
450.683
460.185
470.432
480.214
490.749
50.472
500.656
510.926
520.77
530.135
540.654
550.684
560.825
570.535
580.22
590.378
60.6
600.668
610.9
620.63
630.222
640.593
650.954
660.182
670.504
680.675
690.35
70.697
700.596
710.137
720.5
730.00837
740.486
750.486
760.413
770.154
780.629
790.0878
80.0158
800.68
810.986
820.661
830.247
840.495
850.963
860.754
870.0122
880.62
890.24
90.855
900.808
910.716
920.991
930.777
940.715
950.0193
960.718
970.544
980.0929
990.00161



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs10878


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002557 (fibroblast of pulmonary artery)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001637 (artery)
0000483 (epithelium)
0002384 (connective tissue)
0000479 (tissue)
0000055 (vessel)
0004121 (ectoderm-derived structure)
0004119 (endoderm-derived structure)
0010314 (structure with developmental contribution from neural crest)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000077 (mixed endoderm/mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0005911 (endo-epithelium)
0000477 (anatomical cluster)
0000467 (anatomical system)
0010313 (neural crest-derived structure)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0010371 (ecto-epithelium)
0003509 (arterial blood vessel)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0000078 (mixed ectoderm/mesoderm/endoderm-derived structure)
0002049 (vasculature)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0002012 (pulmonary artery)
0004535 (cardiovascular system)
0004572 (arterial system)
0004537 (blood vasculature)
0008886 (pulmonary vascular system)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000001 (sample)
0000068 (human fibroblast of pulmonary artery sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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