FF:11885-125D4: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00004980 | |||
|accession_numbers=CAGE;DRX008161;DRR009033;DRZ000458;DRZ001843;DRZ011808;DRZ013193 | |||
|ancestors_in_anatomy_facet= | |ancestors_in_anatomy_facet= | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000325,CL:0000473,CL:0000234,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0000860,CL:0002057 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000325,CL:0000473,CL:0000234,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0000860,CL:0002057 | ||
Line 7: | Line 9: | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!3.84!6905.53!PLEK;;chr7:115670804..115670825,-!p1@TFEC!3.06!1155.09!TFEC;;chr11:47400078..47400106,-!p1@SPI1!2.84!684.82!SPI1;;chr16:85932760..85932775,+!p1@IRF8!2.64!438.93!IRF8;;chr3:101546827..101546847,+!p2@NFKBIZ!2.36!317.41!NFKBIZ;;chr10:104155659..104155676,+!p4@NFKB2!2.21!200.00!NFKB2;;chr14:35872453..35872485,-!p2@NFKBIA!2.20!370.58!NFKBIA;;chr10:51572408..51572454,+!p3@NCOA4!2.18!831.35!NCOA4;;chr11:47400062..47400077,-!p2@SPI1!2.17!147.79!SPI1;;chr2:192015701..192015743,-!p1@STAT4!2.16!192.73!STAT4;;chr2:68592394..68592405,+!p2@PLEK!2.13!133.55!PLEK;;chr14:35873947..35873965,-!p1@NFKBIA!2.06!6621.66!NFKBIA;;chr2:70142232..70142251,+!p1@MXD1!2.05!589.25!MXD1;;chr12:72056800..72056834,+!p1@THAP2!2.04!145.26!THAP2;;chr20:39317868..39317884,-!p1@MAFB!2.02!1139.26!MAFB;;chr11:47399947..47399961,-!p3@SPI1!2.02!104.12!SPI1;;chr6:106534192..106534224,+!p1@PRDM1!2.00!267.73!PRDM1;;chr21:30671690..30671762,+!p2@BACH1!1.99!313.30!BACH1;;chr10:31288398..31288455,-!p2@ZNF438!1.99!111.39!ZNF438;;chr10:64018918..64018936,+!p2@ZNF365!1.96!91.14!ZNF365;;chr16:31885093..31885165,+!p1@ZNF267!1.94!1241.17!ZNF267;;chr12:54778471..54778528,-!p1@ZNF385A!1.94!85.13!ZNF385A;;chr21:34442439..34442455,+!p1@OLIG1!1.94!85.13!OLIG1;;chr21:30673091..30673135,+!p7@BACH1!1.93!84.81!BACH1;;chr2:145277640..145277771,-!p1@ZEB2!1.92!1022.81!ZEB2;;chr2:61108695..61108753,+!p1@REL!1.91!516.47!REL;;chr1:38325227..38325246,-!p2@MTF1!1.91!108.23!MTF1;;chr4:103422499..103422632,+!p1@NFKB1!1.89!1483.58!NFKB1;;chr6:126240380..126240430,+!p2@NCOA7!1.89!191.14!NCOA7;;chr10:64576105..64576133,-!p1@EGR2!1.86!142.09!EGR2;;chr5:142782823..142782854,-!p3@NR3C1!1.84!96.84!NR3C1;;chr12:72056749..72056767,+!p6@THAP2!1.84!75.95!THAP2;;chr19:45971246..45971265,+!p1@FOSB!1.83!1157.94!FOSB;;chr10:104155480..104155534,+!p2@NFKB2!1.83!413.62!NFKB2;;chr11:47400032..47400043,-!p5@SPI1!1.82!65.19!SPI1;;chr10:51572339..51572376,+!p4@NCOA4!1.81!138.93!NCOA4;;chr3:101568349..101568365,+!p1@NFKBIZ!1.80!3029.49!NFKBIZ;;chr2:145275162..145275202,-!p2@ZEB2!1.80!345.58!ZEB2;;chr1:37940170..37940190,+!p1@ZC3H12A!1.79!708.24!ZC3H12A;;chrX:153305787..153305807,-!p3@MECP2!1.79!60.44!MECP2;;chr18:77155922..77155939,+!p1@NFATC1!1.77!151.90!NFATC1;;chr7:50344289..50344323,+!p1@IKZF1!1.77!57.91!IKZF1;;chr12:72056773..72056796,+!p3@THAP2!1.76!73.10!THAP2;;chr7:115670792..115670797,-!p2@TFEC!1.73!52.22!TFEC;;chr21:30671235..30671253,+!p1@BACH1!1.71!600.33!BACH1;;chr11:615942..615957,-!p1@IRF7!1.70!436.09!IRF7;;chr10:104154246..104154347,+!p3@NFKB2!1.70!283.55!NFKB2;;chr11:65430554..65430579,-!p3@RELA!1.69!118.67!RELA;;chr8:123793988..123794016,+!p1@ZHX2!1.69!81.96!ZHX2;;chr6:106534230..106534254,+!p2@PRDM1!1.67!110.76!PRDM1;;chr10:31288370..31288393,-!p3@ZNF438!1.67!46.20!ZNF438;;chr11:47399996..47400014,-!p4@SPI1!1.67!45.25!SPI1;;chr14:35872494..35872511,-!p5@NFKBIA!1.64!55.38!NFKBIA;;chr2:68615063..68615089,+!p4@PLEK!1.64!42.72!PLEK;;chr6:12012170..12012245,+!p1@HIVEP1!1.63!200.32!HIVEP1;;chr9:102584262..102584276,+!p1@NR4A3!1.63!90.51!NR4A3;;chr2:61108808..61108821,+!p3@REL!1.63!52.22!REL;;chr13:41635029..41635044,-!p4@ELF1!1.62!83.23!ELF1;;chr8:81397820..81397836,+!p2@ZBTB10!1.62!50.00!ZBTB10;;chr21:30672433..30672464,+!p6@BACH1!1.61!39.87!BACH1;;chr1:157108130..157108173,-!p1@ETV3!1.60!267.09!ETV3;;chr11:47400045..47400060,-!p6@SPI1!1.60!38.92!SPI1;;chr1:212782094..212782109,+!p1@ATF3!1.59!980.40!ATF3;;chr6:126240442..126240459,+!p4@NCOA7!1.59!48.42!NCOA7;;chr6:144385698..144385742,-!p2@PLAGL1!1.59!45.25!PLAGL1;;chr13:41593425..41593480,-!p1@ELF1!1.58!225.00!ELF1;;chr19:36391434..36391450,-!p1@NFKBID!1.58!71.20!NFKBID;;chr10:35484053..35484076,+!p1@CREM!1.57!87.34!CREM;;chr2:231090471..231090504,+!p2@SP140!1.57!36.39!SP140;;chr6:12012249..12012266,+!p5@HIVEP1!1.56!60.76!HIVEP1;;chr6:44233252..44233296,-!p1@NFKBIE!1.55!326.59!NFKBIE;;chr4:81104895..81104920,+!p2@PRDM8!1.55!50.63!PRDM8;;chr22:38597987..38598021,+!p2@MAFF!1.54!199.69!MAFF;;chr2:231084639..231084654,-!p2@SP110!1.54!55.06!SP110;;chr19:50432132..50432217,+!p2@ATF5!1.54!39.56!ATF5;;chr9:129567282..129567353,+!p1@ZBTB43!1.53!412.03!ZBTB43;;chr14:35872962..35873025,-!p3@NFKBIA!1.53!80.38!NFKBIA;;chr9:102584159..102584174,+!p2@NR4A3!1.53!58.23!NR4A3;;chr10:104155680..104155687,+!p6@NFKB2!1.52!31.96!NFKB2;;chr4:103446567..103446592,+!p15@NFKB1!1.50!30.70!NFKB1;;chr4:103423079..103423112,+!p4@NFKB1!1.50!30.38!NFKB1;;chr4:106068026..106068084,+!p1@TET2!1.47!248.11!TET2;;chr9:102584128..102584144,+!p3@NR4A3!1.47!53.80!NR4A3;;chr2:61108771..61108789,+!p4@REL!1.47!43.04!REL;;chr2:231090433..231090469,+!p1@SP140!1.47!28.80!SP140;;chr2:145277882..145277967,-!p3@ZEB2!1.46!46.84!ZEB2;;chr4:103446513..103446530,+!p19@NFKB1!1.46!27.85!NFKB1;;chr6:391743..391759,+!p1@IRF4!1.44!26.27!IRF4;;chr5:131826457..131826514,-!p1@IRF1!1.43!979.13!IRF1;;chr7:17338266..17338282,+!p1@AHR!1.43!267.09!AHR;;chr6:15246200..15246214,+!p2@JARID2!1.43!70.25!JARID2;;chr6:126240463..126240489,+!p6@NCOA7!1.43!28.80!NCOA7;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.43!25.95!ZBED1;;chr2:68615031..68615055,+!p3@PLEK!1.43!25.95!PLEK;;chr11:34642612..34642646,+!p1@EHF!1.43!25.95!EHF;;chr8:22550982..22550999,-!p1@EGR3!1.42!69.62!EGR3;;chr6:12011943..12012015,+!p2@HIVEP1!1.41!76.90!HIVEP1;;chr8:81397846..81397860,+!p3@ZBTB10!1.41!31.01!ZBTB10;;chr17:40440225..40440268,+!p3@STAT5A!1.40!30.70!STAT5A;;chr17:40440359..40440386,+!p4@STAT5A!1.40!24.05!STAT5A;;chr2:97202480..97202499,+!p1@ARID5A!1.39!228.49!ARID5A;;chr20:48599506..48599526,+!p1@SNAI1!1.39!146.52!SNAI1;;chr3:39195037..39195069,-!p2@CSRNP1!1.39!142.72!CSRNP1;;chr11:47399920..47399931,-!p7@SPI1!1.39!23.42!SPI1;;chr3:170075436..170075520,+!p1@SKIL!1.38!478.81!SKIL;;chr9:110252035..110252057,-!p1@KLF4!1.38!354.44!KLF4;;chr12:11802753..11802834,+!p2@ETV6!1.38!108.86!ETV6;;chr14:35872926..35872951,-!p4@NFKBIA!1.38!31.96!NFKBIA;;chr11:65430535..65430549,-!p4@RELA!1.38!26.90!RELA;;chrX:24167086..24167111,+!p4@ZFX!1.38!23.10!ZFX;;chr7:17338324..17338341,+!p3@AHR!1.37!73.74!AHR;;chr2:73520667..73520683,-!p1@EGR4!1.37!22.47!EGR4;;chrX:129244454..129244488,-!p1@ELF4!1.36!153.48!ELF4;;chr3:12329397..12329433,+!p2@PPARG!1.36!49.05!PPARG;;chr8:53373491..53373506,-!p4@ST18!1.36!22.15!ST18;;chr12:54778351..54778378,-!p6@ZNF385A!1.36!21.84!ZNF385A;;chr12:96588219..96588263,+!p2@ELK3!1.35!150.32!ELK3;;chr19:45252008..45252024,+!p2@BCL3!1.35!69.31!BCL3;;chr21:36260295..36260310,-!p3@RUNX1!1.35!34.18!RUNX1;;chr6:126240356..126240379,+!p7@NCOA7!1.34!25.32!NCOA7;;chr21:40177845..40177863,+!p1@ETS2!1.33!1162.68!ETS2;;chr12:48298765..48298783,-!p2@VDR!1.33!42.09!VDR;;chr2:145275228..145275241,-!p11@ZEB2!1.33!24.37!ZEB2;;chr17:38497662..38497713,+!p4@RARA!1.33!23.42!RARA;;chr11:615570..615721,-!p2@IRF7!1.31!37.98!IRF7;;chr8:72755345..72755349,-!p14@MSC!1.31!19.62!MSC;;chr12:72056706..72056717,+!p10@THAP2!1.31!19.30!THAP2;;chr2:191885737..191885750,-!p4@STAT1!1.31!19.30!STAT1;;chr7:106809470..106809481,+!p2@HBP1!1.30!26.58!HBP1;;chr4:83822199..83822239,+!p2@THAP9!1.30!22.47!THAP9;;chr10:3827371..3827386,-!p2@KLF6!1.29!153.48!KLF6;;chrX:153305741..153305753,-!p4@MECP2!1.29!18.67!MECP2;;chr20:56195474..56195506,-!p1@ZBP1!1.29!18.67!ZBP1;;chr12:52445218..52445237,+!p1@NR4A1!1.28!222.79!NR4A1;;chr3:37217736..37217753,-!p2@LRRFIP2!1.28!73.74!LRRFIP2;;chr2:238600998..238601013,+!p5@LRRFIP1!1.28!18.04!LRRFIP1;;chr6:106535598..106535637,+!p7@PRDM1!1.28!18.04!PRDM1;;chr8:72755203..72755239,-!p10@MSC!1.28!18.04!MSC;;chr6:143266297..143266356,-!p1@HIVEP2!1.27!83.86!HIVEP2;;chr8:72756063..72756125,-!p1@MSC!1.27!35.13!MSC;;chr2:208394817..208394834,+!p3@CREB1!1.26!68.36!CREB1;;chr4:81104985..81105005,+!p4@PRDM8!1.26!20.57!PRDM8;;chr14:35872414..35872425,-!p7@NFKBIA!1.26!18.99!NFKBIA;;chr14:35872542..35872553,-!p10@NFKBIA!1.26!17.41!NFKBIA;;chr2:68615096..68615115,+!p5@PLEK!1.26!17.41!PLEK;;chr5:88178983..88179012,-!p1@MEF2C!1.25!126.27!MEF2C;;chr10:114709999..114710031,+!p1@TCF7L2!1.24!378.81!TCF7L2;;chr16:69599899..69599919,+!p2@NFAT5!1.24!182.92!NFAT5;;chr1:161736038..161736056,+!p4@ATF6!1.24!38.29!ATF6;;chrX:153305962..153305995,-!p5@MECP2!1.24!16.46!MECP2;;chr1:158979872..158979898,+!p3@IFI16!1.23!48.42!IFI16;;chr19:45251395..45251432,+!p8@BCL3!1.23!15.82!BCL3;;chr10:104154415..104154434,+!p5@NFKB2!1.23!15.82!NFKB2;;chr2:185463247..185463263,+!p1@ZNF804A!1.22!27.53!ZNF804A;;chr2:28618532..28618610,+!p4@FOSL2!1.22!26.58!FOSL2;;chr14:75745523..75745537,+!p1@FOS!1.21!1793.71!FOS;;chr21:40177892..40177903,+!p2@ETS2!1.21!60.13!ETS2;;chr1:25256756..25256774,-!p1@RUNX3!1.21!28.17!RUNX3;;chr18:3449586..3449617,+!p8@TGIF1!1.21!24.05!TGIF1;;chr2:70167296..70167306,+!p3@MXD1!1.21!23.10!MXD1;;chr2:238600933..238600985,+!p3@LRRFIP1!1.20!79.12!LRRFIP1;;chr10:35416142..35416169,+!p3@CREM!1.20!38.61!CREM;;chr1:158985493..158985535,+!p4@IFI16!1.19!21.84!IFI16;;chr11:64764435..64764449,-!p1@BATF2!1.19!19.94!BATF2;;chr2:191878812..191878823,-!p2@STAT1!1.19!18.35!STAT1;;chr4:106066712..106066728,+!p8@TET2!1.19!14.56!TET2;;chr20:47894569..47894799,-!p1@ZNFX1!1.18!371.84!ZNFX1;;chr12:96588279..96588299,+!p4@ELK3!1.18!66.77!ELK3;;chr10:104155455..104155479,+!p1@NFKB2!1.17!197.47!NFKB2;;chr2:70142189..70142223,+!p2@MXD1!1.17!97.79!MXD1;;chr1:38325256..38325280,-!p1@MTF1!1.17!84.50!MTF1;;chr19:47616992..47617011,-!p4@ZC3H4!1.17!29.11!ZC3H4;;chr18:3449618..3449634,+!p13@TGIF1!1.17!17.09!TGIF1;;chr2:157189180..157189290,-!p1@NR4A2!1.16!69.31!NR4A2;;chr2:178129358..178129403,-!p5@NFE2L2!1.16!53.48!NFE2L2;;chr8:72756267..72756296,-!p4@MSC!1.16!19.94!MSC;;chr21:30672734..30672748,+!p11@BACH1!1.16!13.61!BACH1;;chr13:41593392..41593403,-!p7@ELF1!1.16!13.61!ELF1;;chr14:24630465..24630531,+!p1@IRF9!1.15!497.48!IRF9;;chr18:3449720..3449749,+!p2@TGIF1!1.15!27.85!TGIF1;;chr8:81397876..81397898,+!p5@ZBTB10!1.15!15.51!ZBTB10;;chr2:192015677..192015691,-!p3@STAT4!1.15!12.97!STAT4;;chr20:48807351..48807384,+!p1@CEBPB!1.14!1305.41!CEBPB;;chr6:35310395..35310410,+!p2@PPARD!1.14!49.68!PPARD;;chr1:221052733..221052749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| |expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!3.84!6905.53!PLEK;;chr7:115670804..115670825,-!p1@TFEC!3.06!1155.09!TFEC;;chr11:47400078..47400106,-!p1@SPI1!2.84!684.82!SPI1;;chr16:85932760..85932775,+!p1@IRF8!2.64!438.93!IRF8;;chr3:101546827..101546847,+!p2@NFKBIZ!2.36!317.41!NFKBIZ;;chr10:104155659..104155676,+!p4@NFKB2!2.21!200.00!NFKB2;;chr14:35872453..35872485,-!p2@NFKBIA!2.20!370.58!NFKBIA;;chr10:51572408..51572454,+!p3@NCOA4!2.18!831.35!NCOA4;;chr11:47400062..47400077,-!p2@SPI1!2.17!147.79!SPI1;;chr2:192015701..192015743,-!p1@STAT4!2.16!192.73!STAT4;;chr2:68592394..68592405,+!p2@PLEK!2.13!133.55!PLEK;;chr14:35873947..35873965,-!p1@NFKBIA!2.06!6621.66!NFKBIA;;chr2:70142232..70142251,+!p1@MXD1!2.05!589.25!MXD1;;chr12:72056800..72056834,+!p1@THAP2!2.04!145.26!THAP2;;chr20:39317868..39317884,-!p1@MAFB!2.02!1139.26!MAFB;;chr11:47399947..47399961,-!p3@SPI1!2.02!104.12!SPI1;;chr6:106534192..106534224,+!p1@PRDM1!2.00!267.73!PRDM1;;chr21:30671690..30671762,+!p2@BACH1!1.99!313.30!BACH1;;chr10:31288398..31288455,-!p2@ZNF438!1.99!111.39!ZNF438;;chr10:64018918..64018936,+!p2@ZNF365!1.96!91.14!ZNF365;;chr16:31885093..31885165,+!p1@ZNF267!1.94!1241.17!ZNF267;;chr12:54778471..54778528,-!p1@ZNF385A!1.94!85.13!ZNF385A;;chr21:34442439..34442455,+!p1@OLIG1!1.94!85.13!OLIG1;;chr21:30673091..30673135,+!p7@BACH1!1.93!84.81!BACH1;;chr2:145277640..145277771,-!p1@ZEB2!1.92!1022.81!ZEB2;;chr2:61108695..61108753,+!p1@REL!1.91!516.47!REL;;chr1:38325227..38325246,-!p2@MTF1!1.91!108.23!MTF1;;chr4:103422499..103422632,+!p1@NFKB1!1.89!1483.58!NFKB1;;chr6:126240380..126240430,+!p2@NCOA7!1.89!191.14!NCOA7;;chr10:64576105..64576133,-!p1@EGR2!1.86!142.09!EGR2;;chr5:142782823..142782854,-!p3@NR3C1!1.84!96.84!NR3C1;;chr12:72056749..72056767,+!p6@THAP2!1.84!75.95!THAP2;;chr19:45971246..45971265,+!p1@FOSB!1.83!1157.94!FOSB;;chr10:104155480..104155534,+!p2@NFKB2!1.83!413.62!NFKB2;;chr11:47400032..47400043,-!p5@SPI1!1.82!65.19!SPI1;;chr10:51572339..51572376,+!p4@NCOA4!1.81!138.93!NCOA4;;chr3:101568349..101568365,+!p1@NFKBIZ!1.80!3029.49!NFKBIZ;;chr2:145275162..145275202,-!p2@ZEB2!1.80!345.58!ZEB2;;chr1:37940170..37940190,+!p1@ZC3H12A!1.79!708.24!ZC3H12A;;chrX:153305787..153305807,-!p3@MECP2!1.79!60.44!MECP2;;chr18:77155922..77155939,+!p1@NFATC1!1.77!151.90!NFATC1;;chr7:50344289..50344323,+!p1@IKZF1!1.77!57.91!IKZF1;;chr12:72056773..72056796,+!p3@THAP2!1.76!73.10!THAP2;;chr7:115670792..115670797,-!p2@TFEC!1.73!52.22!TFEC;;chr21:30671235..30671253,+!p1@BACH1!1.71!600.33!BACH1;;chr11:615942..615957,-!p1@IRF7!1.70!436.09!IRF7;;chr10:104154246..104154347,+!p3@NFKB2!1.70!283.55!NFKB2;;chr11:65430554..65430579,-!p3@RELA!1.69!118.67!RELA;;chr8:123793988..123794016,+!p1@ZHX2!1.69!81.96!ZHX2;;chr6:106534230..106534254,+!p2@PRDM1!1.67!110.76!PRDM1;;chr10:31288370..31288393,-!p3@ZNF438!1.67!46.20!ZNF438;;chr11:47399996..47400014,-!p4@SPI1!1.67!45.25!SPI1;;chr14:35872494..35872511,-!p5@NFKBIA!1.64!55.38!NFKBIA;;chr2:68615063..68615089,+!p4@PLEK!1.64!42.72!PLEK;;chr6:12012170..12012245,+!p1@HIVEP1!1.63!200.32!HIVEP1;;chr9:102584262..102584276,+!p1@NR4A3!1.63!90.51!NR4A3;;chr2:61108808..61108821,+!p3@REL!1.63!52.22!REL;;chr13:41635029..41635044,-!p4@ELF1!1.62!83.23!ELF1;;chr8:81397820..81397836,+!p2@ZBTB10!1.62!50.00!ZBTB10;;chr21:30672433..30672464,+!p6@BACH1!1.61!39.87!BACH1;;chr1:157108130..157108173,-!p1@ETV3!1.60!267.09!ETV3;;chr11:47400045..47400060,-!p6@SPI1!1.60!38.92!SPI1;;chr1:212782094..212782109,+!p1@ATF3!1.59!980.40!ATF3;;chr6:126240442..126240459,+!p4@NCOA7!1.59!48.42!NCOA7;;chr6:144385698..144385742,-!p2@PLAGL1!1.59!45.25!PLAGL1;;chr13:41593425..41593480,-!p1@ELF1!1.58!225.00!ELF1;;chr19:36391434..36391450,-!p1@NFKBID!1.58!71.20!NFKBID;;chr10:35484053..35484076,+!p1@CREM!1.57!87.34!CREM;;chr2:231090471..231090504,+!p2@SP140!1.57!36.39!SP140;;chr6:12012249..12012266,+!p5@HIVEP1!1.56!60.76!HIVEP1;;chr6:44233252..44233296,-!p1@NFKBIE!1.55!326.59!NFKBIE;;chr4:81104895..81104920,+!p2@PRDM8!1.55!50.63!PRDM8;;chr22:38597987..38598021,+!p2@MAFF!1.54!199.69!MAFF;;chr2:231084639..231084654,-!p2@SP110!1.54!55.06!SP110;;chr19:50432132..50432217,+!p2@ATF5!1.54!39.56!ATF5;;chr9:129567282..129567353,+!p1@ZBTB43!1.53!412.03!ZBTB43;;chr14:35872962..35873025,-!p3@NFKBIA!1.53!80.38!NFKBIA;;chr9:102584159..102584174,+!p2@NR4A3!1.53!58.23!NR4A3;;chr10:104155680..104155687,+!p6@NFKB2!1.52!31.96!NFKB2;;chr4:103446567..103446592,+!p15@NFKB1!1.50!30.70!NFKB1;;chr4:103423079..103423112,+!p4@NFKB1!1.50!30.38!NFKB1;;chr4:106068026..106068084,+!p1@TET2!1.47!248.11!TET2;;chr9:102584128..102584144,+!p3@NR4A3!1.47!53.80!NR4A3;;chr2:61108771..61108789,+!p4@REL!1.47!43.04!REL;;chr2:231090433..231090469,+!p1@SP140!1.47!28.80!SP140;;chr2:145277882..145277967,-!p3@ZEB2!1.46!46.84!ZEB2;;chr4:103446513..103446530,+!p19@NFKB1!1.46!27.85!NFKB1;;chr6:391743..391759,+!p1@IRF4!1.44!26.27!IRF4;;chr5:131826457..131826514,-!p1@IRF1!1.43!979.13!IRF1;;chr7:17338266..17338282,+!p1@AHR!1.43!267.09!AHR;;chr6:15246200..15246214,+!p2@JARID2!1.43!70.25!JARID2;;chr6:126240463..126240489,+!p6@NCOA7!1.43!28.80!NCOA7;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.43!25.95!ZBED1;;chr2:68615031..68615055,+!p3@PLEK!1.43!25.95!PLEK;;chr11:34642612..34642646,+!p1@EHF!1.43!25.95!EHF;;chr8:22550982..22550999,-!p1@EGR3!1.42!69.62!EGR3;;chr6:12011943..12012015,+!p2@HIVEP1!1.41!76.90!HIVEP1;;chr8:81397846..81397860,+!p3@ZBTB10!1.41!31.01!ZBTB10;;chr17:40440225..40440268,+!p3@STAT5A!1.40!30.70!STAT5A;;chr17:40440359..40440386,+!p4@STAT5A!1.40!24.05!STAT5A;;chr2:97202480..97202499,+!p1@ARID5A!1.39!228.49!ARID5A;;chr20:48599506..48599526,+!p1@SNAI1!1.39!146.52!SNAI1;;chr3:39195037..39195069,-!p2@CSRNP1!1.39!142.72!CSRNP1;;chr11:47399920..47399931,-!p7@SPI1!1.39!23.42!SPI1;;chr3:170075436..170075520,+!p1@SKIL!1.38!478.81!SKIL;;chr9:110252035..110252057,-!p1@KLF4!1.38!354.44!KLF4;;chr12:11802753..11802834,+!p2@ETV6!1.38!108.86!ETV6;;chr14:35872926..35872951,-!p4@NFKBIA!1.38!31.96!NFKBIA;;chr11:65430535..65430549,-!p4@RELA!1.38!26.90!RELA;;chrX:24167086..24167111,+!p4@ZFX!1.38!23.10!ZFX;;chr7:17338324..17338341,+!p3@AHR!1.37!73.74!AHR;;chr2:73520667..73520683,-!p1@EGR4!1.37!22.47!EGR4;;chrX:129244454..129244488,-!p1@ELF4!1.36!153.48!ELF4;;chr3:12329397..12329433,+!p2@PPARG!1.36!49.05!PPARG;;chr8:53373491..53373506,-!p4@ST18!1.36!22.15!ST18;;chr12:54778351..54778378,-!p6@ZNF385A!1.36!21.84!ZNF385A;;chr12:96588219..96588263,+!p2@ELK3!1.35!150.32!ELK3;;chr19:45252008..45252024,+!p2@BCL3!1.35!69.31!BCL3;;chr21:36260295..36260310,-!p3@RUNX1!1.35!34.18!RUNX1;;chr6:126240356..126240379,+!p7@NCOA7!1.34!25.32!NCOA7;;chr21:40177845..40177863,+!p1@ETS2!1.33!1162.68!ETS2;;chr12:48298765..48298783,-!p2@VDR!1.33!42.09!VDR;;chr2:145275228..145275241,-!p11@ZEB2!1.33!24.37!ZEB2;;chr17:38497662..38497713,+!p4@RARA!1.33!23.42!RARA;;chr11:615570..615721,-!p2@IRF7!1.31!37.98!IRF7;;chr8:72755345..72755349,-!p14@MSC!1.31!19.62!MSC;;chr12:72056706..72056717,+!p10@THAP2!1.31!19.30!THAP2;;chr2:191885737..191885750,-!p4@STAT1!1.31!19.30!STAT1;;chr7:106809470..106809481,+!p2@HBP1!1.30!26.58!HBP1;;chr4:83822199..83822239,+!p2@THAP9!1.30!22.47!THAP9;;chr10:3827371..3827386,-!p2@KLF6!1.29!153.48!KLF6;;chrX:153305741..153305753,-!p4@MECP2!1.29!18.67!MECP2;;chr20:56195474..56195506,-!p1@ZBP1!1.29!18.67!ZBP1;;chr12:52445218..52445237,+!p1@NR4A1!1.28!222.79!NR4A1;;chr3:37217736..37217753,-!p2@LRRFIP2!1.28!73.74!LRRFIP2;;chr2:238600998..238601013,+!p5@LRRFIP1!1.28!18.04!LRRFIP1;;chr6:106535598..106535637,+!p7@PRDM1!1.28!18.04!PRDM1;;chr8:72755203..72755239,-!p10@MSC!1.28!18.04!MSC;;chr6:143266297..143266356,-!p1@HIVEP2!1.27!83.86!HIVEP2;;chr8:72756063..72756125,-!p1@MSC!1.27!35.13!MSC;;chr2:208394817..208394834,+!p3@CREB1!1.26!68.36!CREB1;;chr4:81104985..81105005,+!p4@PRDM8!1.26!20.57!PRDM8;;chr14:35872414..35872425,-!p7@NFKBIA!1.26!18.99!NFKBIA;;chr14:35872542..35872553,-!p10@NFKBIA!1.26!17.41!NFKBIA;;chr2:68615096..68615115,+!p5@PLEK!1.26!17.41!PLEK;;chr5:88178983..88179012,-!p1@MEF2C!1.25!126.27!MEF2C;;chr10:114709999..114710031,+!p1@TCF7L2!1.24!378.81!TCF7L2;;chr16:69599899..69599919,+!p2@NFAT5!1.24!182.92!NFAT5;;chr1:161736038..161736056,+!p4@ATF6!1.24!38.29!ATF6;;chrX:153305962..153305995,-!p5@MECP2!1.24!16.46!MECP2;;chr1:158979872..158979898,+!p3@IFI16!1.23!48.42!IFI16;;chr19:45251395..45251432,+!p8@BCL3!1.23!15.82!BCL3;;chr10:104154415..104154434,+!p5@NFKB2!1.23!15.82!NFKB2;;chr2:185463247..185463263,+!p1@ZNF804A!1.22!27.53!ZNF804A;;chr2:28618532..28618610,+!p4@FOSL2!1.22!26.58!FOSL2;;chr14:75745523..75745537,+!p1@FOS!1.21!1793.71!FOS;;chr21:40177892..40177903,+!p2@ETS2!1.21!60.13!ETS2;;chr1:25256756..25256774,-!p1@RUNX3!1.21!28.17!RUNX3;;chr18:3449586..3449617,+!p8@TGIF1!1.21!24.05!TGIF1;;chr2:70167296..70167306,+!p3@MXD1!1.21!23.10!MXD1;;chr2:238600933..238600985,+!p3@LRRFIP1!1.20!79.12!LRRFIP1;;chr10:35416142..35416169,+!p3@CREM!1.20!38.61!CREM;;chr1:158985493..158985535,+!p4@IFI16!1.19!21.84!IFI16;;chr11:64764435..64764449,-!p1@BATF2!1.19!19.94!BATF2;;chr2:191878812..191878823,-!p2@STAT1!1.19!18.35!STAT1;;chr4:106066712..106066728,+!p8@TET2!1.19!14.56!TET2;;chr20:47894569..47894799,-!p1@ZNFX1!1.18!371.84!ZNFX1;;chr12:96588279..96588299,+!p4@ELK3!1.18!66.77!ELK3;;chr10:104155455..104155479,+!p1@NFKB2!1.17!197.47!NFKB2;;chr2:70142189..70142223,+!p2@MXD1!1.17!97.79!MXD1;;chr1:38325256..38325280,-!p1@MTF1!1.17!84.50!MTF1;;chr19:47616992..47617011,-!p4@ZC3H4!1.17!29.11!ZC3H4;;chr18:3449618..3449634,+!p13@TGIF1!1.17!17.09!TGIF1;;chr2:157189180..157189290,-!p1@NR4A2!1.16!69.31!NR4A2;;chr2:178129358..178129403,-!p5@NFE2L2!1.16!53.48!NFE2L2;;chr8:72756267..72756296,-!p4@MSC!1.16!19.94!MSC;;chr21:30672734..30672748,+!p11@BACH1!1.16!13.61!BACH1;;chr13:41593392..41593403,-!p7@ELF1!1.16!13.61!ELF1;;chr14:24630465..24630531,+!p1@IRF9!1.15!497.48!IRF9;;chr18:3449720..3449749,+!p2@TGIF1!1.15!27.85!TGIF1;;chr8:81397876..81397898,+!p5@ZBTB10!1.15!15.51!ZBTB10;;chr2:192015677..192015691,-!p3@STAT4!1.15!12.97!STAT4;;chr20:48807351..48807384,+!p1@CEBPB!1.14!1305.41!CEBPB;;chr6:35310395..35310410,+!p2@PPARD!1.14!49.68!PPARD;;chr1:221052733..221052749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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000234;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000576;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000763;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000766;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000860;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405 | |||
|ffid_belonging_in_development=CL:0000049,CL:0000134,CL:0002057 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
Line 37: | Line 42: | ||
|fonse_treatment_closure=EFO:0000369,FF:0000335,FF:0000625,FF:0011108,FF:11885-125D4 | |fonse_treatment_closure=EFO:0000369,FF:0000335,FF:0000625,FF:0011108,FF:11885-125D4 | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520lipopolysaccharide%252c%2520donor3.CNhs13545.11885-125D4.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520lipopolysaccharide%252c%2520donor3.CNhs13545.11885-125D4.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520lipopolysaccharide%252c%2520donor3.CNhs13545.11885-125D4.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520lipopolysaccharide%252c%2520donor3.CNhs13545.11885-125D4.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520lipopolysaccharide%252c%2520donor3.CNhs13545.11885-125D4.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11885-125D4 | |id=FF:11885-125D4 | ||
|is_a=EFO:0002091;;FF:0011108 | |is_a=EFO:0002091;;FF:0011108 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs13545 | |||
|library_id_phase_based=2:CNhs13545 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11885 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11885 | |||
|name=CD14+ monocytes - treated with lipopolysaccharide, donor3 | |name=CD14+ monocytes - treated with lipopolysaccharide, donor3 | ||
|namespace= | |namespace= | ||
Line 45: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs13545,LSID1029,release012,COMPLETED | |profile_hcage=CNhs13545,LSID1029,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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|rna_box=125 | |rna_box=125 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
Line 60: | Line 79: | ||
|rna_weight_ug=1.66743 | |rna_weight_ug=1.66743 | ||
|sample_age=21 | |sample_age=21 | ||
|sample_category=primary cells | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
Line 81: | Line 101: | ||
|top_motifs=IRF7:6.20002226303;HLF:5.7662540421;NFE2:5.56900081549;FOS_FOS{B,L1}_JUN{B,D}:5.46820917377;NFIL3:5.27257889193;BACH2:5.14482396247;NFE2L2:5.11408882639;IRF1,2:5.10969153141;NFKB1_REL_RELA:5.10197540961;CEBPA,B_DDIT3:5.09415804329;FOSL2:5.04260997879;PAX8:4.62728748717;FOXP3:4.27857402622;PAX2:4.22663635574;STAT5{A,B}:4.19303186086;SPIB:3.82433587014;NFATC1..3:3.77204596765;HSF1,2:3.6088027941;SPI1:3.39746254476;DMAP1_NCOR{1,2}_SMARC:3.31670388138;ATF5_CREB3:3.19583462169;ETS1,2:3.06988213942;NANOG{mouse}:3.06500795078;STAT2,4,6:3.02993821365;CDX1,2,4:2.81113889428;ATF4:2.54008910761;SREBF1,2:2.49321356982;CREB1:2.46164486913;RUNX1..3:2.44435429298;HMGA1,2:2.37956394696;JUN:2.33733630609;FOXN1:2.28579512053;ATF2:2.11185981932;ATF6:2.07536608083;PAX3,7:1.95994308881;NFE2L1:1.86530227217;ALX4:1.74310640976;PDX1:1.56877169575;RXRA_VDR{dimer}:1.41748264304;ELF1,2,4:1.36611224666;XBP1:1.33073302315;NR1H4:1.29611484765;TGIF1:1.24523919406;POU2F1..3:1.12094259133;MAFB:1.11572747348;PPARG:1.00809663875;ZBTB16:0.978507432868;IKZF1:0.929164371167;HOX{A5,B5}:0.894905499553;RBPJ:0.862787527124;TBP:0.862499807956;FOXO1,3,4:0.740964947899;SRF:0.655405124412;HOXA9_MEIS1:0.631425362209;EN1,2:0.609969567425;OCT4_SOX2{dimer}:0.607691969787;STAT1,3:0.561345553713;NR3C1:0.560726964675;PRDM1:0.489151626217;PAX4:0.416687862405;BPTF:0.315998730527;POU5F1:0.289792100803;ALX1:0.275628193051;VSX1,2:0.211015811578;EP300:0.149222392662;GLI1..3:0.133107605009;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.0689055811521;PAX1,9:0.0488816274461;TLX2:0.0259769567;NANOG:-0.0206358964705;HBP1_HMGB_SSRP1_UBTF:-0.0691894913435;RORA:-0.294229051115;GATA4:-0.306938823289;AHR_ARNT_ARNT2:-0.316743585814;HIF1A:-0.343314725771;NKX3-1:-0.379373250475;MEF2{A,B,C,D}:-0.429597271225;SOX2:-0.521905623419;FOX{D1,D2}:-0.522464392263;NR6A1:-0.540271713866;POU3F1..4:-0.54536795748;EGR1..3:-0.562294292607;IKZF2:-0.588101518504;FOXM1:-0.618923811165;RFX2..5_RFXANK_RFXAP:-0.632288330819;SMAD1..7,9:-0.70340422449;NFIX:-0.735120501396;FOXL1:-0.781424850221;MYB:-0.818716111333;DBP:-0.822515552777;TFCP2:-0.834740833787;HMX1:-0.844402611395;PRRX1,2:-0.851330144061;ADNP_IRX_SIX_ZHX:-0.879521736863;CRX:-0.890682952443;PAX6:-0.927069323183;SOX5:-0.980675560172;FOXD3:-0.987404493286;TAL1_TCF{3,4,12}:-1.00364565418;HES1:-1.01753588957;CDC5L:-1.1486298445;FOXA2:-1.2077139945;POU6F1:-1.26748248642;TEF:-1.27802542871;MZF1:-1.29436237568;SPZ1:-1.31713375593;NHLH1,2:-1.3349136137;ESR1:-1.34660588898;PITX1..3:-1.34872288626;REST:-1.3906144623;HNF4A_NR2F1,2:-1.40520766227;HOX{A4,D4}:-1.40787830978;E2F1..5:-1.44715173035;RFX1:-1.44766677264;NKX2-2,8:-1.46887143008;HNF1A:-1.47717269318;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.50854323497;MYFfamily:-1.52837787094;FOX{F1,F2,J1}:-1.52941883917;MED-1{core}:-1.54832619452;ESRRA:-1.55803397914;ZFP161:-1.66396643623;GTF2A1,2:-1.67479758248;ZNF384:-1.70792569753;ZNF238:-1.7135817732;MTE{core}:-1.759965966;CUX2:-1.76340352765;FOXP1:-1.78637362419;TEAD1:-1.84262420086;NKX2-1,4:-1.84843281828;GATA6:-1.90005092106;BREu{core}:-1.93073800518;NKX6-1,2:-1.99869414067;SP1:-2.02061955489;TBX4,5:-2.02223880239;NKX2-3_NKX2-5:-2.03790915392;MYBL2:-2.05282188499;ZBTB6:-2.09388679276;TFDP1:-2.10686902721;HOX{A6,A7,B6,B7}:-2.10800934069;GTF2I:-2.12250228874;SOX{8,9,10}:-2.13656227416;POU1F1:-2.13866342646;ZNF148:-2.21389633466;ELK1,4_GABP{A,B1}:-2.24063645146;TLX1..3_NFIC{dimer}:-2.25792183494;ZEB1:-2.26351557831;GZF1:-2.30449605785;RXR{A,B,G}:-2.30544151344;PATZ1:-2.32177781349;NFY{A,B,C}:-2.32694903358;TFAP4:-2.33557212737;ONECUT1,2:-2.33656963363;TFAP2B:-2.367679967;FOX{I1,J2}:-2.39716289019;NKX3-2:-2.4111227053;MTF1:-2.42729886394;SOX17:-2.43613149107;GFI1B:-2.44973541559;SNAI1..3:-2.48518634851;TP53:-2.4899283084;MAZ:-2.51429518559;XCPE1{core}:-2.53971474197;T:-2.56135281301;GCM1,2:-2.5686900606;ARID5B:-2.60504068121;KLF4:-2.64941004177;TFAP2{A,C}:-2.75846669899;HIC1:-2.76940681943;MYOD1:-2.78980375764;ZIC1..3:-2.94050049396;PBX1:-3.04995594704;EVI1:-3.05022800818;UFEwm:-3.05141827631;bHLH_family:-3.06546006622;AIRE:-3.0989814513;NR5A1,2:-3.11801778035;RREB1:-3.15268808438;EBF1:-3.17210881525;GFI1:-3.21045979708;FOXQ1:-3.21939024529;YY1:-3.32399323697;NRF1:-3.32437192431;PAX5:-3.44826237898;LMO2:-3.64578265091;LHX3,4:-3.83775609932;ZNF423:-3.89810574382;AR:-3.93365574311;ZNF143:-4.00814151883;LEF1_TCF7_TCF7L1,2:-4.07225038205;TOPORS:-4.52909381901;HAND1,2:-5.23271588434 | |top_motifs=IRF7:6.20002226303;HLF:5.7662540421;NFE2:5.56900081549;FOS_FOS{B,L1}_JUN{B,D}:5.46820917377;NFIL3:5.27257889193;BACH2:5.14482396247;NFE2L2:5.11408882639;IRF1,2:5.10969153141;NFKB1_REL_RELA:5.10197540961;CEBPA,B_DDIT3:5.09415804329;FOSL2:5.04260997879;PAX8:4.62728748717;FOXP3:4.27857402622;PAX2:4.22663635574;STAT5{A,B}:4.19303186086;SPIB:3.82433587014;NFATC1..3:3.77204596765;HSF1,2:3.6088027941;SPI1:3.39746254476;DMAP1_NCOR{1,2}_SMARC:3.31670388138;ATF5_CREB3:3.19583462169;ETS1,2:3.06988213942;NANOG{mouse}:3.06500795078;STAT2,4,6:3.02993821365;CDX1,2,4:2.81113889428;ATF4:2.54008910761;SREBF1,2:2.49321356982;CREB1:2.46164486913;RUNX1..3:2.44435429298;HMGA1,2:2.37956394696;JUN:2.33733630609;FOXN1:2.28579512053;ATF2:2.11185981932;ATF6:2.07536608083;PAX3,7:1.95994308881;NFE2L1:1.86530227217;ALX4:1.74310640976;PDX1:1.56877169575;RXRA_VDR{dimer}:1.41748264304;ELF1,2,4:1.36611224666;XBP1:1.33073302315;NR1H4:1.29611484765;TGIF1:1.24523919406;POU2F1..3:1.12094259133;MAFB:1.11572747348;PPARG:1.00809663875;ZBTB16:0.978507432868;IKZF1:0.929164371167;HOX{A5,B5}:0.894905499553;RBPJ:0.862787527124;TBP:0.862499807956;FOXO1,3,4:0.740964947899;SRF:0.655405124412;HOXA9_MEIS1:0.631425362209;EN1,2:0.609969567425;OCT4_SOX2{dimer}:0.607691969787;STAT1,3:0.561345553713;NR3C1:0.560726964675;PRDM1:0.489151626217;PAX4:0.416687862405;BPTF:0.315998730527;POU5F1:0.289792100803;ALX1:0.275628193051;VSX1,2:0.211015811578;EP300:0.149222392662;GLI1..3:0.133107605009;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.0689055811521;PAX1,9:0.0488816274461;TLX2:0.0259769567;NANOG:-0.0206358964705;HBP1_HMGB_SSRP1_UBTF:-0.0691894913435;RORA:-0.294229051115;GATA4:-0.306938823289;AHR_ARNT_ARNT2:-0.316743585814;HIF1A:-0.343314725771;NKX3-1:-0.379373250475;MEF2{A,B,C,D}:-0.429597271225;SOX2:-0.521905623419;FOX{D1,D2}:-0.522464392263;NR6A1:-0.540271713866;POU3F1..4:-0.54536795748;EGR1..3:-0.562294292607;IKZF2:-0.588101518504;FOXM1:-0.618923811165;RFX2..5_RFXANK_RFXAP:-0.632288330819;SMAD1..7,9:-0.70340422449;NFIX:-0.735120501396;FOXL1:-0.781424850221;MYB:-0.818716111333;DBP:-0.822515552777;TFCP2:-0.834740833787;HMX1:-0.844402611395;PRRX1,2:-0.851330144061;ADNP_IRX_SIX_ZHX:-0.879521736863;CRX:-0.890682952443;PAX6:-0.927069323183;SOX5:-0.980675560172;FOXD3:-0.987404493286;TAL1_TCF{3,4,12}:-1.00364565418;HES1:-1.01753588957;CDC5L:-1.1486298445;FOXA2:-1.2077139945;POU6F1:-1.26748248642;TEF:-1.27802542871;MZF1:-1.29436237568;SPZ1:-1.31713375593;NHLH1,2:-1.3349136137;ESR1:-1.34660588898;PITX1..3:-1.34872288626;REST:-1.3906144623;HNF4A_NR2F1,2:-1.40520766227;HOX{A4,D4}:-1.40787830978;E2F1..5:-1.44715173035;RFX1:-1.44766677264;NKX2-2,8:-1.46887143008;HNF1A:-1.47717269318;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.50854323497;MYFfamily:-1.52837787094;FOX{F1,F2,J1}:-1.52941883917;MED-1{core}:-1.54832619452;ESRRA:-1.55803397914;ZFP161:-1.66396643623;GTF2A1,2:-1.67479758248;ZNF384:-1.70792569753;ZNF238:-1.7135817732;MTE{core}:-1.759965966;CUX2:-1.76340352765;FOXP1:-1.78637362419;TEAD1:-1.84262420086;NKX2-1,4:-1.84843281828;GATA6:-1.90005092106;BREu{core}:-1.93073800518;NKX6-1,2:-1.99869414067;SP1:-2.02061955489;TBX4,5:-2.02223880239;NKX2-3_NKX2-5:-2.03790915392;MYBL2:-2.05282188499;ZBTB6:-2.09388679276;TFDP1:-2.10686902721;HOX{A6,A7,B6,B7}:-2.10800934069;GTF2I:-2.12250228874;SOX{8,9,10}:-2.13656227416;POU1F1:-2.13866342646;ZNF148:-2.21389633466;ELK1,4_GABP{A,B1}:-2.24063645146;TLX1..3_NFIC{dimer}:-2.25792183494;ZEB1:-2.26351557831;GZF1:-2.30449605785;RXR{A,B,G}:-2.30544151344;PATZ1:-2.32177781349;NFY{A,B,C}:-2.32694903358;TFAP4:-2.33557212737;ONECUT1,2:-2.33656963363;TFAP2B:-2.367679967;FOX{I1,J2}:-2.39716289019;NKX3-2:-2.4111227053;MTF1:-2.42729886394;SOX17:-2.43613149107;GFI1B:-2.44973541559;SNAI1..3:-2.48518634851;TP53:-2.4899283084;MAZ:-2.51429518559;XCPE1{core}:-2.53971474197;T:-2.56135281301;GCM1,2:-2.5686900606;ARID5B:-2.60504068121;KLF4:-2.64941004177;TFAP2{A,C}:-2.75846669899;HIC1:-2.76940681943;MYOD1:-2.78980375764;ZIC1..3:-2.94050049396;PBX1:-3.04995594704;EVI1:-3.05022800818;UFEwm:-3.05141827631;bHLH_family:-3.06546006622;AIRE:-3.0989814513;NR5A1,2:-3.11801778035;RREB1:-3.15268808438;EBF1:-3.17210881525;GFI1:-3.21045979708;FOXQ1:-3.21939024529;YY1:-3.32399323697;NRF1:-3.32437192431;PAX5:-3.44826237898;LMO2:-3.64578265091;LHX3,4:-3.83775609932;ZNF423:-3.89810574382;AR:-3.93365574311;ZNF143:-4.00814151883;LEF1_TCF7_TCF7L1,2:-4.07225038205;TOPORS:-4.52909381901;HAND1,2:-5.23271588434 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11885-125D4;search_select_hide=table117:FF:11885-125D4 | |||
}} | }} |
Latest revision as of 18:26, 4 June 2020
Name: | CD14+ monocytes - treated with lipopolysaccharide, donor3 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs13545 |
Sample type: | primary cells |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13545
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13545
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.0912 |
10 | 10 | 0.0236 |
100 | 100 | 0.91 |
101 | 101 | 0.982 |
102 | 102 | 0.916 |
103 | 103 | 0.216 |
104 | 104 | 0.497 |
105 | 105 | 0.179 |
106 | 106 | 7.14567e-4 |
107 | 107 | 0.236 |
108 | 108 | 0.614 |
109 | 109 | 0.299 |
11 | 11 | 0.149 |
110 | 110 | 0.148 |
111 | 111 | 0.113 |
112 | 112 | 0.427 |
113 | 113 | 0.429 |
114 | 114 | 0.0317 |
115 | 115 | 0.156 |
116 | 116 | 0.885 |
117 | 117 | 0.0846 |
118 | 118 | 0.209 |
119 | 119 | 0.124 |
12 | 12 | 0.297 |
120 | 120 | 0.563 |
121 | 121 | 0.773 |
122 | 122 | 0.7 |
123 | 123 | 0.611 |
124 | 124 | 0.836 |
125 | 125 | 0.168 |
126 | 126 | 0.226 |
127 | 127 | 0.577 |
128 | 128 | 0.0706 |
129 | 129 | 0.328 |
13 | 13 | 0.0827 |
130 | 130 | 0.433 |
131 | 131 | 0.917 |
132 | 132 | 0.122 |
133 | 133 | 0.878 |
134 | 134 | 0.566 |
135 | 135 | 0.756 |
136 | 136 | 0.766 |
137 | 137 | 0.0344 |
138 | 138 | 0.506 |
139 | 139 | 0.112 |
14 | 14 | 0.546 |
140 | 140 | 0.601 |
141 | 141 | 0.261 |
142 | 142 | 0.235 |
143 | 143 | 0.0315 |
144 | 144 | 0.445 |
145 | 145 | 0.299 |
146 | 146 | 0.872 |
147 | 147 | 0.869 |
148 | 148 | 0.0108 |
149 | 149 | 0.97 |
15 | 15 | 0.156 |
150 | 150 | 0.31 |
151 | 151 | 0.602 |
152 | 152 | 0.541 |
153 | 153 | 0.802 |
154 | 154 | 0.795 |
155 | 155 | 0.853 |
156 | 156 | 0.7 |
157 | 157 | 0.863 |
158 | 158 | 0.0946 |
159 | 159 | 0.0737 |
16 | 16 | 0.313 |
160 | 160 | 0.404 |
161 | 161 | 0.41 |
162 | 162 | 0.253 |
163 | 163 | 0.158 |
164 | 164 | 0.168 |
165 | 165 | 0.18 |
166 | 166 | 0.999 |
167 | 167 | 0.281 |
168 | 168 | 0.0735 |
169 | 169 | 0.0193 |
17 | 17 | 0.274 |
18 | 18 | 0.111 |
19 | 19 | 0.555 |
2 | 2 | 0.398 |
20 | 20 | 0.173 |
21 | 21 | 0.81 |
22 | 22 | 0.346 |
23 | 23 | 0.0393 |
24 | 24 | 0.384 |
25 | 25 | 0.418 |
26 | 26 | 0.0591 |
27 | 27 | 0.565 |
28 | 28 | 0.308 |
29 | 29 | 0.243 |
3 | 3 | 0.12 |
30 | 30 | 0.365 |
31 | 31 | 0.719 |
32 | 32 | 0.411 |
33 | 33 | 0.161 |
34 | 34 | 0.771 |
35 | 35 | 0.108 |
36 | 36 | 0.0594 |
37 | 37 | 0.065 |
38 | 38 | 0.397 |
39 | 39 | 0.782 |
4 | 4 | 0.921 |
40 | 40 | 0.192 |
41 | 41 | 0.0283 |
42 | 42 | 0.294 |
43 | 43 | 0.0198 |
44 | 44 | 0.537 |
45 | 45 | 0.75 |
46 | 46 | 0.187 |
47 | 47 | 0.501 |
48 | 48 | 0.477 |
49 | 49 | 0.153 |
5 | 5 | 0.296 |
50 | 50 | 0.947 |
51 | 51 | 0.56 |
52 | 52 | 0.349 |
53 | 53 | 0.67 |
54 | 54 | 0.482 |
55 | 55 | 0.62 |
56 | 56 | 0.697 |
57 | 57 | 0.835 |
58 | 58 | 0.185 |
59 | 59 | 0.247 |
6 | 6 | 0.747 |
60 | 60 | 0.04 |
61 | 61 | 0.729 |
62 | 62 | 0.0928 |
63 | 63 | 0.533 |
64 | 64 | 0.484 |
65 | 65 | 0.232 |
66 | 66 | 0.424 |
67 | 67 | 0.399 |
68 | 68 | 0.461 |
69 | 69 | 0.21 |
7 | 7 | 0.218 |
70 | 70 | 0.0435 |
71 | 71 | 0.0284 |
72 | 72 | 0.193 |
73 | 73 | 0.268 |
74 | 74 | 0.0454 |
75 | 75 | 0.146 |
76 | 76 | 0.171 |
77 | 77 | 0.563 |
78 | 78 | 0.122 |
79 | 79 | 0.693 |
8 | 8 | 0.337 |
80 | 80 | 0.158 |
81 | 81 | 0.289 |
82 | 82 | 0.203 |
83 | 83 | 0.033 |
84 | 84 | 0.0836 |
85 | 85 | 0.0517 |
86 | 86 | 0.0831 |
87 | 87 | 0.341 |
88 | 88 | 0.758 |
89 | 89 | 0.213 |
9 | 9 | 0.389 |
90 | 90 | 0.0838 |
91 | 91 | 0.437 |
92 | 92 | 0.27 |
93 | 93 | 0.489 |
94 | 94 | 0.0886 |
95 | 95 | 0.538 |
96 | 96 | 0.404 |
97 | 97 | 0.466 |
98 | 98 | 0.156 |
99 | 99 | 0.0948 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs13545
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0011108 human CD14-positive monocytes - treated with lipopolysaccharide sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000325 (stuff accumulating cell)
0000473 (defensive cell)
0000234 (phagocyte)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0000255 (eukaryotic cell)
0000576 (monocyte)
0000860 (classical monocyte)
0002057 (CD14-positive, CD16-negative classical monocyte)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000625 (experimental infection sample)
0000350 (experimentally modified sample)
0000335 (LPS treatment sample)
0011108 (human CD14-positive monocytes - treated with lipopolysaccharide sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
CL:0002057 (CD14-positive, CD16-negative classical monocyte)