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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005764
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005764
|accession_numbers=CAGE;DRX008207;DRR009079;DRZ000504;DRZ001889;DRZ011854;DRZ013239
|accession_numbers_RNASeq=sRNA-Seq;DRX037213;DRR041579;DRZ007221
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000970,UBERON:0000019,UBERON:0000483,UBERON:0000033,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0000047,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000020,UBERON:0010371,UBERON:0002203,UBERON:0001768,UBERON:0000488,UBERON:0007625,UBERON:0001032,UBERON:0002049,UBERON:0002200,UBERON:0006876,UBERON:0010317,UBERON:0007798,UBERON:0001778,UBERON:0004088,UBERON:0000153,UBERON:0007811,UBERON:0004535,UBERON:0002104,UBERON:0001801,UBERON:0004456,UBERON:0001456,UBERON:0001775,UBERON:0010230,UBERON:0001009
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000970,UBERON:0000019,UBERON:0000483,UBERON:0000033,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0000047,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000020,UBERON:0010371,UBERON:0002203,UBERON:0001768,UBERON:0000488,UBERON:0007625,UBERON:0001032,UBERON:0002049,UBERON:0002200,UBERON:0006876,UBERON:0010317,UBERON:0007798,UBERON:0001778,UBERON:0004088,UBERON:0000153,UBERON:0007811,UBERON:0004535,UBERON:0002104,UBERON:0001801,UBERON:0004456,UBERON:0001456,UBERON:0001775,UBERON:0010230,UBERON:0001009
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000064,CL:0000075,CL:0000066,CL:0002371,CL:0000710,CL:0000255,CL:0002077,CL:0000067,CL:0005012,CL:0002304
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000064,CL:0000075,CL:0000066,CL:0002371,CL:0000710,CL:0000255,CL:0002077,CL:0000067,CL:0005012,CL:0002304
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
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IL!0.75!5.32!SKIL;;chr2:5832493..5832507,+!p2@SOX11!0.75!4.66!SOX11;;chr3:147111198..147111225,+!p4@ZIC1!0.75!4.66!ZIC1;;chr3:181429704..181429722,+!p1@SOX2!0.75!4.66!SOX2;;chr19:49864746..49864780,-!p2@TEAD2!0.74!6.43!TEAD2;;chr6:43140095..43140145,+!p5@SRF!0.74!5.76!SRF;;chr5:92919068..92919082,+!p5@NR2F1!0.74!5.54!NR2F1;;chr1:164528687..164528711,+!p6@PBX1!0.74!5.32!PBX1;;chrX:84498989..84499003,+!p1@ZNF711!0.73!6.21!ZNF711;;chr9:16870659..16870675,-!p2@BNC2!0.72!5.32!BNC2;;chr5:92919375..92919438,+!p6@NR2F1!0.72!4.66!NR2F1;;chr2:45169179..45169190,+!p8@SIX3!0.72!4.21!SIX3;;chr3:25469815..25469866,+!p3@RARB!0.72!4.21!RARB;;chr16:86601052..86601066,+!p4@FOXC2!0.72!4.21!FOXC2;;chr12:66357214..66357233,+!p13@HMGA2!0.72!4.21!HMGA2;;chr2:60780607..60780624,-!p2@BCL11A!0.70!13.75!BCL11A;;chr6:45390025..45390076,+!p2@RUNX2!0.70!10.42!RUNX2;;chr11:61520075..61520136,+!p1@C11orf9!0.70!9.31!C11orf9;;chr8:60031682..60031710,-!p2@TOX!0.70!6.87!TOX;;chr6:45390300..45390335,+!p4@RUNX2!0.70!6.65!RUNX2;;chr19:53496768..53496799,-!p1@ZNF702P!0.70!6.65!ZNF702P;;chr11:31839453..31839462,-!p9@PAX6!0.70!3.99!PAX6;;chr9:126774058..126774081,+!p3@LHX2!0.70!3.99!LHX2;;chr3:12329397..12329433,+!p2@PPARG!0.69!9.76!PPARG;;chr3:71631382..71631413,-!p20@FOXP1!0.69!4.66!FOXP1;;chr3:71355163..71355209,-!p5@FOXP1!0.68!5.54!FOXP1;;chr7:14028488..14028516,-!p2@ETV1!0.68!4.21!ETV1;;chrX:136648297..136648319,+!p3@ZIC3!0.68!3.77!ZIC3;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!0.68!3.77!PEG3;;chr3:147127329..147127341,+!p7@ZIC1!0.68!3.77!ZIC1;;chr6:21593973..21593988,+!p1@SOX4!0.67!154.10!SOX4;;chr7:14029283..14029311,-!p1@ETV1!0.67!22.62!ETV1;;chr5:92920456..92920488,+!p9@NR2F1!0.67!4.43!NR2F1;;chr2:71127699..71127744,+!p1@VAX2!0.66!7.98!VAX2;;chr3:12330560..12330579,+!p1@PPARG!0.66!4.21!PPARG;;chr3:21792631..21792665,-!p3@ZNF385D!0.66!3.55!ZNF385D;;chr4:8873716..8873738,-!p2@HMX1!0.66!3.55!HMX1;;chr20:45142154..45142227,-!p1@ZNF334!0.65!7.54!ZNF334;;chr7:113726357..113726443,+!p1@FOXP2!0.65!6.43!FOXP2;;chr12:66218378..66218401,+!p6@HMGA2!0.65!5.76!HMGA2;;chr1:23696448..23696453,-!p5@ZNF436!0.65!4.43!ZNF436;;chr1:23696348..23696363,-!p4@ZNF436!0.65!3.99!ZNF436;;chr5:124082322..124082364,-!p1@ZNF608!0.64!9.76!ZNF608;;chr12:24715376..24715432,-!p1@SOX5!0.64!4.43!SOX5;;chr12:66358080..66358094,+!p15@HMGA2!0.64!3.33!HMGA2;;chr13:100634004..100634025,+!p2@ZIC2!0.64!3.33!ZIC2;;chr7:26191809..26191890,+!p1@NFE2L3!0.63!18.63!NFE2L3;;chr5:178368186..178368238,+!p1@ZNF454!0.63!6.43!ZNF454;;chr3:150126904..150126958,+!p7@TSC22D2!0.63!6.21!TSC22D2;;chr9:4299979..4299996,-!p3@GLIS3!0.63!5.76!GLIS3;;chr1:8926441..8926473,-!p10@ENO1!0.63!5.32!ENO1;;chrX:84499081..84499115,+!p2@ZNF711!0.63!5.10!ZNF711;;chr5:72744562..72744573,-!p3@FOXD1!0.63!4.21!FOXD1;;chr2:66662895..66662907,+!p3@MEIS1!0.63!4.21!MEIS1;;chr12:66218152..66218174,+!p10@HMGA2!0.63!3.55!HMGA2;;chr8:49833948..49833973,-!p2@SNAI2!0.62!23.50!SNAI2;;chr14:62162285..62162296,+!p3@HIF1A!0.62!19.29!HIF1A;;chr5:72744445..72744466,-!p2@FOXD1!0.62!5.76!FOXD1;;chr20:50721803..50721857,-!p2@ZFP64!0.62!5.32!ZFP64;;chr15:80696703..80696754,+!p1@ARNT2!0.62!4.43!ARNT2;;chr15:37392724..37392757,-!p1@MEIS2!0.61!16.41!MEIS2;;chr9:4300016..4300039,-!p2@GLIS3!0.61!5.76!GLIS3;;chr19:45260775..45260838,+!p5@BCL3!0.61!4.21!BCL3;;chr3:168865194..168865245,-!p3@MECOM!0.61!4.21!MECOM;;chr12:80083807..80083859,-!p11@PAWR!0.61!3.99!PAWR;;chr2:25475094..25475112,-!p3@DNMT3A!0.61!3.10!DNMT3A;;chrY:2803415..2803468,+!p1@ZFY!0.61!3.10!ZFY;;chr2:185463247..185463263,+!p1@ZNF804A!0.60!5.76!ZNF804A;;chr12:66218443..66218461,+!p8@HMGA2!0.60!3.99!HMGA2;;chr14:62162258..62162269,+!p2@HIF1A!0.59!33.48!HIF1A;;chr7:28725740..28725778,+!p1@CREB5!0.59!31.04!CREB5;;chr3:114343768..114343822,-!p1@ZBTB20!0.59!15.08!ZBTB20;;chr1:164528911..164528940,+!p7@PBX1!0.59!4.66!PBX1;;chr16:67881588..67881612,-!p2@CENPT!0.59!4.21!CENPT;;chr12:26278008..26278024,-!p4@BHLHE41!0.59!3.55!BHLHE41;;chr16:30406423..30406447,+!p4@ZNF48!0.59!2.88!ZNF48;;chr16:86600458..86600461,+!p3@FOXC2!0.59!2.88!FOXC2;;chr18:42260840..42260860,+!p2@SETBP1!0.59!2.88!SETBP1;;chr2:45169233..45169244,+!p10@SIX3!0.59!2.88!SIX3;;chr3:168865144..168865160,-!p6@MECOM!0.59!2.88!MECOM;;chr19:49865646..49865718,-!p1@TEAD2!0.57!28.82!TEAD2;;chr1:164528410..164528428,+!p1@PBX1!0.57!25.28!PBX1;;chr19:1592714..1592762,-!p1@MBD3!0.57!25.28!MBD3;;chr21:30671690..30671762,+!p2@BACH1!0.57!11.09!BACH1;;chr9:14083467..14083483,-!p4@NFIB!0.57!7.76!NFIB;;chr15:96869255..96869291,+!p6@NR2F2!0.57!5.54!NR2F2;;chr9:16870710..16870763,-!p1@BNC2!0.57!5.32!BNC2;;chr11:46299539..46299620,+!p2@CREB3L1!0.57!5.10!CREB3L1;;chr3:42947600..42947680,+!p1@ZNF662!0.57!4.21!ZNF662;;chr20:6748325..6748352,+!p1@BMP2!0.57!4.21!BMP2;;chr12:125002739..125002756,-!p6@NCOR2!0.56!4.21!NCOR2;;chr6:134210243..134210257,+!p1@TCF21!0.56!2.66!TCF21;;chr8:77593750..77593757,+!p3@ZFHX4!0.56!2.66!ZFHX4;;chr1:8934931..8934947,-!p4@ENO1!0.55!9.98!ENO1;;chr15:66994561..66994597,+!p2@SMAD6!0.55!7.10!SMAD6;;chr1:23696308..23696339,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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000067;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000133;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000221;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000710;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002077;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000970;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001768;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001801;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007625
|ffid_belonging_in_development=CL:0000133,CL:0000221
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 37: Line 44:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Ciliary%2520Epithelial%2520Cells%252c%2520donor2.CNhs11966.11323-117D9.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Ciliary%2520Epithelial%2520Cells%252c%2520donor2.CNhs11966.11323-117D9.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Ciliary%2520Epithelial%2520Cells%252c%2520donor2.CNhs11966.11323-117D9.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Ciliary%2520Epithelial%2520Cells%252c%2520donor2.CNhs11966.11323-117D9.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Ciliary%2520Epithelial%2520Cells%252c%2520donor2.CNhs11966.11323-117D9.hg38.nobarcode.ctss.bed.gz
|id=FF:11323-117D9
|id=FF:11323-117D9
|is_a=EFO:0002091;;FF:0000040
|is_a=EFO:0002091;;FF:0000040
|is_obsolete=
|is_obsolete=
|library_id=CNhs11966
|library_id_phase_based=2:CNhs11966
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11323
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10013.CTTGTA.11323
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11323
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10013.CTTGTA.11323
|name=Ciliary Epithelial Cells, donor2
|name=Ciliary Epithelial Cells, donor2
|namespace=FANTOM5
|namespace=FANTOM5
Line 45: Line 65:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs11966,LSID836,release011,COMPLETED
|profile_hcage=CNhs11966,LSID836,release011,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=SRhi10013,,,
|profile_srnaseq=SRhi10013,,,
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|rna_box=117
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|rna_catalog_number=SC6585
Line 59: Line 82:
|rna_tube_id=117D9
|rna_tube_id=117D9
|rna_weight_ug=10
|rna_weight_ug=10
|rnaseq_library_id=SRhi10013.CTTGTA
|sample_age=fetal
|sample_age=fetal
|sample_category=primary cells
|sample_cell_catalog=N/A
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_line=
Line 81: Line 106:
|top_motifs=T:2.04354886063;NKX2-1,4:2.00531233997;ZIC1..3:1.95752617052;PAX1,9:1.78332765409;ZNF384:1.58101068258;SOX17:1.3566777092;CDC5L:1.23596941698;SOX2:1.22158190373;NKX3-1:1.17989473258;EVI1:1.17762827064;ONECUT1,2:1.12225368599;UFEwm:1.12140966271;GFI1:1.12030016714;NR3C1:1.10783604925;HOXA9_MEIS1:1.0458195469;TEAD1:0.9809840428;NANOG:0.974380684572;MZF1:0.960353876975;FOXP1:0.95466847667;TOPORS:0.928299834013;EBF1:0.881609562578;MAZ:0.866559538227;NKX6-1,2:0.823128793641;HOX{A4,D4}:0.804827717811;EGR1..3:0.798179420409;NR6A1:0.757170942316;POU3F1..4:0.736405632669;GFI1B:0.736085079453;ALX1:0.712833026944;HMGA1,2:0.680422675879;NFY{A,B,C}:0.662126991023;ZFP161:0.659885301558;DBP:0.642566558054;SRF:0.640448734499;HSF1,2:0.632480769245;GTF2A1,2:0.631458445725;KLF4:0.618115644159;ALX4:0.594629042018;CDX1,2,4:0.590020303663;LHX3,4:0.58858454871;TFCP2:0.578616629894;TFDP1:0.565327360553;TBX4,5:0.552185964571;NKX2-3_NKX2-5:0.522227715578;STAT1,3:0.521009956187;PAX5:0.518449624033;SP1:0.513715106421;AIRE:0.511017540567;TFAP2{A,C}:0.503925177806;GATA4:0.503050585875;TLX1..3_NFIC{dimer}:0.499086341369;PATZ1:0.49510520105;TFAP4:0.4454890519;IKZF1:0.440283795911;GZF1:0.438153853851;NRF1:0.418851737833;XCPE1{core}:0.407760622206;PAX8:0.403703730173;E2F1..5:0.401582106639;ELK1,4_GABP{A,B1}:0.393915001963;HOX{A5,B5}:0.379949023002;ZBTB6:0.377865516468;GTF2I:0.360820591977;PAX4:0.358641822021;MTE{core}:0.351095732379;POU6F1:0.331698386064;SOX{8,9,10}:0.326981391345;ZNF143:0.324118719693;PRDM1:0.27529592701;RXR{A,B,G}:0.258219337707;ZBTB16:0.234213375037;FOXD3:0.232404145471;HIC1:0.214629191636;TEF:0.211293468525;PBX1:0.204025211933;TFAP2B:0.190860652121;MYBL2:0.183799701088;GLI1..3:0.183382121754;TAL1_TCF{3,4,12}:0.181409148584;ESRRA:0.176317605999;YY1:0.151892927877;NFATC1..3:0.151590092321;HNF4A_NR2F1,2:0.134790986123;POU5F1:0.121427176973;OCT4_SOX2{dimer}:0.119393954335;NFE2L1:0.119246641247;EN1,2:0.116334189093;ADNP_IRX_SIX_ZHX:0.110546404186;ZNF148:0.0857576180134;LEF1_TCF7_TCF7L1,2:0.0736384583636;PITX1..3:0.0661543948574;FOXM1:0.0581553661171;NKX3-2:0.0526889132147;IKZF2:0.0393566177416;NHLH1,2:0.022210270876;RBPJ:0.0177417693562;XBP1:0.0136449404946;RFX1:0.0122125014912;HMX1:0.00942254750912;FOSL2:-0.0164438140794;MYOD1:-0.0172904599741;TP53:-0.040611919639;AHR_ARNT_ARNT2:-0.0631898451043;BACH2:-0.0673333676262;MTF1:-0.0792850358599;SPZ1:-0.103895728054;MYFfamily:-0.111585660378;NANOG{mouse}:-0.112116506559;LMO2:-0.12411823747;NR1H4:-0.13182978016;CRX:-0.138392614142;GCM1,2:-0.141508875317;SMAD1..7,9:-0.161581420107;MYB:-0.175276386858;FOS_FOS{B,L1}_JUN{B,D}:-0.185629427661;HNF1A:-0.187731014356;NKX2-2,8:-0.19206663387;PAX6:-0.197334760053;ARID5B:-0.200525421199;RREB1:-0.205624157019;NFE2L2:-0.206393154565;STAT2,4,6:-0.206676910213;BREu{core}:-0.215140652211;JUN:-0.217042451296;FOXL1:-0.219214519679;RUNX1..3:-0.221872000983;VSX1,2:-0.22739645277;NR5A1,2:-0.238664505705;RXRA_VDR{dimer}:-0.239733580443;POU2F1..3:-0.245023703291;ZEB1:-0.254569354664;REST:-0.258045674538;FOXA2:-0.285419452862;CUX2:-0.294349602504;TLX2:-0.296326046465;POU1F1:-0.299481884132;TBP:-0.308294482254;MED-1{core}:-0.317575395886;SNAI1..3:-0.317898853315;ATF6:-0.318684719996;MEF2{A,B,C,D}:-0.321065612305;FOXN1:-0.368280683408;NFE2:-0.369508307449;TGIF1:-0.380540415954;PRRX1,2:-0.399735965588;CREB1:-0.410424454597;FOXP3:-0.423206057753;NFIX:-0.428489156456;NFKB1_REL_RELA:-0.429045956935;AR:-0.430762239448;HOX{A6,A7,B6,B7}:-0.441646028656;RFX2..5_RFXANK_RFXAP:-0.48095852778;ZNF423:-0.488401496691;ATF4:-0.489604444284;IRF1,2:-0.491910846866;PAX2:-0.495533445124;SOX5:-0.49785056063;HIF1A:-0.499610695936;BPTF:-0.518758768778;ELF1,2,4:-0.540091719778;PAX3,7:-0.554349551569;FOXQ1:-0.56444361503;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.606645414045;SPI1:-0.607038315487;STAT5{A,B}:-0.607845350412;HLF:-0.612886197698;ATF2:-0.62844953028;ESR1:-0.639259428953;FOX{D1,D2}:-0.646035255901;EP300:-0.648386901194;SPIB:-0.664624896862;RORA:-0.676556290285;MAFB:-0.679258222527;FOX{I1,J2}:-0.697222077081;ZNF238:-0.745945652904;ETS1,2:-0.757575632909;IRF7:-0.773420084121;ATF5_CREB3:-0.778225081121;DMAP1_NCOR{1,2}_SMARC:-0.780693605026;GATA6:-0.793580165971;bHLH_family:-0.800280039975;FOXO1,3,4:-0.87627895134;SREBF1,2:-0.884992429057;CEBPA,B_DDIT3:-0.897136962169;PDX1:-0.902941096415;NFIL3:-0.926024545055;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.933111306771;HBP1_HMGB_SSRP1_UBTF:-1.0609360863;HAND1,2:-1.09898919768;FOX{F1,F2,J1}:-1.32327217235;PPARG:-1.42742902664;HES1:-1.6043197772
|top_motifs=T:2.04354886063;NKX2-1,4:2.00531233997;ZIC1..3:1.95752617052;PAX1,9:1.78332765409;ZNF384:1.58101068258;SOX17:1.3566777092;CDC5L:1.23596941698;SOX2:1.22158190373;NKX3-1:1.17989473258;EVI1:1.17762827064;ONECUT1,2:1.12225368599;UFEwm:1.12140966271;GFI1:1.12030016714;NR3C1:1.10783604925;HOXA9_MEIS1:1.0458195469;TEAD1:0.9809840428;NANOG:0.974380684572;MZF1:0.960353876975;FOXP1:0.95466847667;TOPORS:0.928299834013;EBF1:0.881609562578;MAZ:0.866559538227;NKX6-1,2:0.823128793641;HOX{A4,D4}:0.804827717811;EGR1..3:0.798179420409;NR6A1:0.757170942316;POU3F1..4:0.736405632669;GFI1B:0.736085079453;ALX1:0.712833026944;HMGA1,2:0.680422675879;NFY{A,B,C}:0.662126991023;ZFP161:0.659885301558;DBP:0.642566558054;SRF:0.640448734499;HSF1,2:0.632480769245;GTF2A1,2:0.631458445725;KLF4:0.618115644159;ALX4:0.594629042018;CDX1,2,4:0.590020303663;LHX3,4:0.58858454871;TFCP2:0.578616629894;TFDP1:0.565327360553;TBX4,5:0.552185964571;NKX2-3_NKX2-5:0.522227715578;STAT1,3:0.521009956187;PAX5:0.518449624033;SP1:0.513715106421;AIRE:0.511017540567;TFAP2{A,C}:0.503925177806;GATA4:0.503050585875;TLX1..3_NFIC{dimer}:0.499086341369;PATZ1:0.49510520105;TFAP4:0.4454890519;IKZF1:0.440283795911;GZF1:0.438153853851;NRF1:0.418851737833;XCPE1{core}:0.407760622206;PAX8:0.403703730173;E2F1..5:0.401582106639;ELK1,4_GABP{A,B1}:0.393915001963;HOX{A5,B5}:0.379949023002;ZBTB6:0.377865516468;GTF2I:0.360820591977;PAX4:0.358641822021;MTE{core}:0.351095732379;POU6F1:0.331698386064;SOX{8,9,10}:0.326981391345;ZNF143:0.324118719693;PRDM1:0.27529592701;RXR{A,B,G}:0.258219337707;ZBTB16:0.234213375037;FOXD3:0.232404145471;HIC1:0.214629191636;TEF:0.211293468525;PBX1:0.204025211933;TFAP2B:0.190860652121;MYBL2:0.183799701088;GLI1..3:0.183382121754;TAL1_TCF{3,4,12}:0.181409148584;ESRRA:0.176317605999;YY1:0.151892927877;NFATC1..3:0.151590092321;HNF4A_NR2F1,2:0.134790986123;POU5F1:0.121427176973;OCT4_SOX2{dimer}:0.119393954335;NFE2L1:0.119246641247;EN1,2:0.116334189093;ADNP_IRX_SIX_ZHX:0.110546404186;ZNF148:0.0857576180134;LEF1_TCF7_TCF7L1,2:0.0736384583636;PITX1..3:0.0661543948574;FOXM1:0.0581553661171;NKX3-2:0.0526889132147;IKZF2:0.0393566177416;NHLH1,2:0.022210270876;RBPJ:0.0177417693562;XBP1:0.0136449404946;RFX1:0.0122125014912;HMX1:0.00942254750912;FOSL2:-0.0164438140794;MYOD1:-0.0172904599741;TP53:-0.040611919639;AHR_ARNT_ARNT2:-0.0631898451043;BACH2:-0.0673333676262;MTF1:-0.0792850358599;SPZ1:-0.103895728054;MYFfamily:-0.111585660378;NANOG{mouse}:-0.112116506559;LMO2:-0.12411823747;NR1H4:-0.13182978016;CRX:-0.138392614142;GCM1,2:-0.141508875317;SMAD1..7,9:-0.161581420107;MYB:-0.175276386858;FOS_FOS{B,L1}_JUN{B,D}:-0.185629427661;HNF1A:-0.187731014356;NKX2-2,8:-0.19206663387;PAX6:-0.197334760053;ARID5B:-0.200525421199;RREB1:-0.205624157019;NFE2L2:-0.206393154565;STAT2,4,6:-0.206676910213;BREu{core}:-0.215140652211;JUN:-0.217042451296;FOXL1:-0.219214519679;RUNX1..3:-0.221872000983;VSX1,2:-0.22739645277;NR5A1,2:-0.238664505705;RXRA_VDR{dimer}:-0.239733580443;POU2F1..3:-0.245023703291;ZEB1:-0.254569354664;REST:-0.258045674538;FOXA2:-0.285419452862;CUX2:-0.294349602504;TLX2:-0.296326046465;POU1F1:-0.299481884132;TBP:-0.308294482254;MED-1{core}:-0.317575395886;SNAI1..3:-0.317898853315;ATF6:-0.318684719996;MEF2{A,B,C,D}:-0.321065612305;FOXN1:-0.368280683408;NFE2:-0.369508307449;TGIF1:-0.380540415954;PRRX1,2:-0.399735965588;CREB1:-0.410424454597;FOXP3:-0.423206057753;NFIX:-0.428489156456;NFKB1_REL_RELA:-0.429045956935;AR:-0.430762239448;HOX{A6,A7,B6,B7}:-0.441646028656;RFX2..5_RFXANK_RFXAP:-0.48095852778;ZNF423:-0.488401496691;ATF4:-0.489604444284;IRF1,2:-0.491910846866;PAX2:-0.495533445124;SOX5:-0.49785056063;HIF1A:-0.499610695936;BPTF:-0.518758768778;ELF1,2,4:-0.540091719778;PAX3,7:-0.554349551569;FOXQ1:-0.56444361503;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.606645414045;SPI1:-0.607038315487;STAT5{A,B}:-0.607845350412;HLF:-0.612886197698;ATF2:-0.62844953028;ESR1:-0.639259428953;FOX{D1,D2}:-0.646035255901;EP300:-0.648386901194;SPIB:-0.664624896862;RORA:-0.676556290285;MAFB:-0.679258222527;FOX{I1,J2}:-0.697222077081;ZNF238:-0.745945652904;ETS1,2:-0.757575632909;IRF7:-0.773420084121;ATF5_CREB3:-0.778225081121;DMAP1_NCOR{1,2}_SMARC:-0.780693605026;GATA6:-0.793580165971;bHLH_family:-0.800280039975;FOXO1,3,4:-0.87627895134;SREBF1,2:-0.884992429057;CEBPA,B_DDIT3:-0.897136962169;PDX1:-0.902941096415;NFIL3:-0.926024545055;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.933111306771;HBP1_HMGB_SSRP1_UBTF:-1.0609360863;HAND1,2:-1.09898919768;FOX{F1,F2,J1}:-1.32327217235;PPARG:-1.42742902664;HES1:-1.6043197772
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11323-117D9;search_select_hide=table117:FF:11323-117D9
}}
}}

Latest revision as of 17:52, 4 June 2020

Name:Ciliary Epithelial Cells, donor2
Species:Human (Homo sapiens)
Library ID:CNhs11966
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueeye
dev stagefetus
sexunknown
agefetal
cell typeciliated epithelial cell
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number564
catalog numberSC6585
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005764
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11966 CAGE DRX008207 DRR009079
Accession ID Hg19

Library idBAMCTSS
CNhs11966 DRZ000504 DRZ001889
Accession ID Hg38

Library idBAMCTSS
CNhs11966 DRZ011854 DRZ013239
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005764
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10013.CTTGTA sRNA-Seq DRX037213 DRR041579
Accession ID Hg19

Library idBAMCTSS
SRhi10013.CTTGTA DRZ007221


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.0764
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.166
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.087
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.0539
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0776
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.0357
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.00676
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.319
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.468
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.102
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.087
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.0384
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.15
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.276
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.087
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.841
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.536
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.33
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.407
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11966

Jaspar motifP-value
MA0002.20.0131
MA0003.10.0331
MA0004.10.052
MA0006.10.342
MA0007.10.604
MA0009.10.147
MA0014.10.197
MA0017.10.0127
MA0018.20.0439
MA0019.10.843
MA0024.10.127
MA0025.10.138
MA0027.10.9
MA0028.10.587
MA0029.10.445
MA0030.18.68829e-4
MA0031.15.15352e-5
MA0035.20.0388
MA0038.10.101
MA0039.20.418
MA0040.10.405
MA0041.10.198
MA0042.10.255
MA0043.10.0163
MA0046.10.73
MA0047.24.41231e-5
MA0048.10.0833
MA0050.13.99191e-4
MA0051.10.0127
MA0052.10.0122
MA0055.10.662
MA0057.10.672
MA0058.10.0104
MA0059.10.0507
MA0060.12.22669e-4
MA0061.11.94578e-4
MA0062.20.0399
MA0065.20.00444
MA0066.10.29
MA0067.10.00516
MA0068.10.0264
MA0069.10.622
MA0070.10.811
MA0071.10.314
MA0072.10.509
MA0073.10.99
MA0074.10.427
MA0076.10.965
MA0077.10.139
MA0078.10.563
MA0079.20.465
MA0080.22.2974e-13
MA0081.10.0363
MA0083.10.0121
MA0084.10.317
MA0087.10.266
MA0088.10.113
MA0090.10.0163
MA0091.10.163
MA0092.10.274
MA0093.10.0691
MA0099.22.88005e-5
MA0100.10.927
MA0101.10.0123
MA0102.22.72545e-4
MA0103.10.118
MA0104.20.00629
MA0105.12.667e-6
MA0106.10.961
MA0107.11.46473e-4
MA0108.20.775
MA0111.10.587
MA0112.22.93011e-4
MA0113.10.0673
MA0114.10.032
MA0115.10.632
MA0116.11.77111e-5
MA0117.10.575
MA0119.10.771
MA0122.10.974
MA0124.10.503
MA0125.10.412
MA0131.10.912
MA0135.10.623
MA0136.17.8711e-17
MA0137.20.153
MA0138.20.166
MA0139.10.537
MA0140.10.012
MA0141.10.123
MA0142.10.166
MA0143.10.374
MA0144.10.159
MA0145.10.458
MA0146.10.196
MA0147.10.0351
MA0148.15.93989e-4
MA0149.10.0905
MA0150.12.41884e-5
MA0152.10.269
MA0153.10.753
MA0154.10.00243
MA0155.10.51
MA0156.11.84549e-9
MA0157.10.00728
MA0159.10.0204
MA0160.10.0239
MA0162.10.622
MA0163.11.09749e-6
MA0164.10.777
MA0258.10.00549
MA0259.10.223



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11966

Novel motifP-value
10.109
100.229
1000.637
1010.498
1020.477
1030.165
1040.656
1050.0522
1060.0419
1070.705
1080.888
1090.108
110.114
1100.704
1110.00601
1120.039
1130.166
1140.115
1150.0361
1160.779
1170.28
1180.46
1190.621
120.193
1200.925
1210.961
1220.33
1230.0816
1240.236
1250.82
1260.101
1270.158
1280.36
1290.335
130.552
1300.492
1310.693
1320.89
1330.904
1340.55
1350.0395
1360.24
1370.0594
1380.24
1390.0577
140.615
1400.164
1410.255
1420.98
1430.0892
1440.771
1450.728
1460.591
1470.539
1480.0382
1490.234
150.116
1500.731
1510.212
1520.182
1530.326
1540.558
1550.012
1560.132
1570.378
1580.00554
1590.544
160.71
1600.265
1610.66
1620.226
1630.437
1640.286
1650.883
1660.0398
1670.946
1680.719
1690.00845
170.215
180.0945
190.498
20.422
200.922
210.769
220.154
230.153
240.334
250.253
260.427
270.27
280.919
290.212
30.237
300.895
310.748
320.302
330.445
340.526
350.318
360.0252
370.206
380.119
390.423
40.494
400.071
410.034
420.319
430.0794
440.925
450.428
460.105
470.378
480.337
490.048
50.123
500.716
510.502
520.438
530.37
540.515
550.989
560.498
570.611
580.0756
590.292
60.644
600.0376
610.169
620.0704
630.235
640.204
650.134
660.848
670.832
680.489
690.767
70.29
700.0924
710.144
720.103
730.128
740.64
750.0293
760.197
770.261
780.718
790.536
80.563
800.105
810.483
820.0919
830.579
840.27
850.0489
860.165
870.799
880.743
890.575
90.261
900.516
910.856
920.201
930.0062
940.145
950.0203
960.0499
970.782
980.0547
990.156



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11966


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000064 (ciliated cell)
0000075 (columnar/cuboidal epithelial cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000710 (neurecto-epithelial cell)
0000255 (eukaryotic cell)
0002077 (ecto-epithelial cell)
0000067 (ciliated epithelial cell)
0005012 (multi-ciliated epithelial cell)
0002304 (non-pigmented ciliary epithelial cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000970 (eye)
0000019 (camera-type eye)
0000483 (epithelium)
0000033 (head)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0000047 (simple eye)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0001444 (subdivision of head)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0000020 (sense organ)
0010371 (ecto-epithelium)
0002203 (vasculature of eye)
0001768 (uvea)
0000488 (atypical epithelium)
0007625 (pigment epithelium of eye)
0001032 (sensory system)
0002049 (vasculature)
0002200 (vasculature of head)
0006876 (vasculature of organ)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0001778 (ciliary epithelium)
0004088 (ocular region)
0000153 (anterior region of body)
0007811 (craniocervical region)
0004535 (cardiovascular system)
0002104 (visual system)
0001801 (anterior segment of eyeball)
0004456 (entire sense organ system)
0001456 (face)
0001775 (ciliary body)
0010230 (eyeball of camera-type eye)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000040 (human ciliary epithelial cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000133 (neurectodermal cell)
CL:0000221 (ectodermal cell)

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