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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00004828
|accession_numbers=CAGE;DRX008673;DRR009545;DRZ000970;DRZ002355;DRZ012320;DRZ013705
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0007100,UBERON:0000948,UBERON:0002084,UBERON:0000479,UBERON:0000064,UBERON:0010314,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0004151,UBERON:0002082,UBERON:0010317,UBERON:0004535,UBERON:0001009
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0007100,UBERON:0000948,UBERON:0002084,UBERON:0000479,UBERON:0000064,UBERON:0010314,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0004151,UBERON:0002082,UBERON:0010317,UBERON:0004535,UBERON:0001009
|ancestors_in_cell_lineage_facet=
|ancestors_in_cell_lineage_facet=
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr5:172662197..172662216,-!p1@NKX2-5!2.37!231.07!NKX2-5;;chr15:42749722..42749739,-!p2@ZFP106!2.24!302.58!ZFP106;;chr20:62680984..62680999,-!p1@SOX18!2.15!183.40!SOX18;;chr7:35293685..35293718,-!p1@TBX20!2.10!124.47!TBX20;;chr12:52437488..52437507,+!p2@NR4A1!1.98!95.34!NR4A1;;chr4:174451370..174451387,-!p1@HAND2!1.94!86.07!HAND2;;chr8:11561684..11561751,+!p1@GATA4!1.80!61.57!GATA4;;chr16:54320617..54320643,-!p3@IRX3!1.77!72.83!IRX3;;chr1:40105299..40105326,-!p1@HEYL!1.76!56.28!HEYL;;chr1:214161272..214161322,+!p1@PROX1!1.74!74.82!PROX1;;chr19:46801639..46801699,+!p1@HIF3A!1.70!49.66!HIF3A;;chr14:105935396..105935413,+!p4@MTA1!1.68!47.01!MTA1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.67!45.68!ZBED1;;chr12:10875658..10875708,-!p2@CSDA!1.63!92.03!CSDA;;chr16:54320646..54320672,-!p2@IRX3!1.58!56.28!IRX3;;chr4:174451350..174451363,-!p3@HAND2!1.55!34.43!HAND2;;chr18:19749541..19749557,+!p1@GATA6!1.53!99.98!GATA6;;chr6:126070769..126070801,+!p1@HEY2!1.52!36.42!HEY2;;chr11:113930425..113930471,+!p1@ZBTB16!1.51!44.36!ZBTB16;;chr18:19749386..19749404,+!p2@GATA6!1.50!43.70!GATA6;;chr8:55370487..55370503,+!p1@SOX17!1.50!30.46!SOX17;;chr11:47400078..47400106,-!p1@SPI1!1.48!29.13!SPI1;;chr11:46337652..46337682,+!p16@CREB3L1!1.47!28.47!CREB3L1;;chr4:174450089..174450153,-!p2@HAND2!1.46!27.81!HAND2;;chr8:10588010..10588030,-!p1@SOX7!1.41!24.50!SOX7;;chr3:126076242..126076257,-!p1@KLF15!1.37!27.81!KLF15;;chr6:134210243..134210257,+!p1@TCF21!1.37!22.51!TCF21;;chr21:39870339..39870443,-!p1@ERG!1.29!18.54!ERG;;chr3:69788576..69788648,+!p1@MITF!1.28!94.68!MITF;;chr4:57547454..57547469,-!p1@HOPX!1.28!17.88!HOPX;;chr17:46126136..46126152,+!p1@NFE2L1!1.27!869.33!NFE2L1;;chr16:54964899..54964914,+!p2@IRX5!1.24!16.55!IRX5;;chr5:172662303..172662320,-!p2@NKX2-5!1.24!16.55!NKX2-5;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!1.23!15.89!SEBOX;;chr5:153857778..153857794,-!p1@HAND1!1.21!15.23!HAND1;;chr17:6926362..6926377,+!p1@BCL6B!1.19!14.57!BCL6B;;chr8:106330656..106330684,+!p1@ZFPM2!1.18!37.08!ZFPM2;;chr5:71803177..71803255,-!p1@ZNF366!1.17!13.90!ZNF366;;chr18:19749517..19749531,+!p3@GATA6!1.13!22.51!GATA6;;chr8:25902876..25902936,-!p1@EBF2!1.13!12.58!EBF2;;chr19:46800289..46800327,+!p2@HIF3A!1.13!12.58!HIF3A;;chr17:53342311..53342400,+!p1@HLF!1.12!13.90!HLF;;chr2:242556880..242556899,-!p5@THAP4!1.11!11.92!THAP4;;chr16:79634595..79634620,-!p2@MAF!1.09!20.52!MAF;;chr19:22193731..22193751,-!p1@ZNF208!1.09!11.26!ZNF208;;chr11:47400062..47400077,-!p2@SPI1!1.09!11.26!SPI1;;chr1:151804244..151804310,-!p1@RORC!1.09!11.26!RORC;;chr1:216896752..216896778,-!p1@ESRRG!1.09!11.26!ESRRG;;chr1:27240455..27240474,-!p1@NR0B2!1.09!11.26!NR0B2;;chr5:172662230..172662241,-!p3@NKX2-5!1.09!11.26!NKX2-5;;chr16:54320675..54320715,-!p1@IRX3!1.08!23.84!IRX3;;chr7:150945754..150945789,-!p2@SMARCD3!1.07!33.77!SMARCD3;;chr7:15726243..15726293,-!p2@MEOX2!1.06!10.59!MEOX2;;chr10:131762504..131762555,-!p1@EBF3!1.06!10.59!EBF3;;chr1:216896780..216896800,-!p2@ESRRG!1.06!10.59!ESRRG;;chr20:590944..590960,-!p1@TCF15!1.06!10.59!TCF15;;chr11:64073022..64073056,+!p1@ESRRA!1.04!120.50!ESRRA;;chr9:77112244..77112262,+!p1@RORB!1.04!11.26!RORB;;chr4:26165074..26165110,+!p9@RBPJ!1.04!9.93!RBPJ;;chr18:19749353..19749367,+!p4@GATA6!1.04!9.93!GATA6;;chr11:113930401..113930422,+!p3@ZBTB16!1.04!9.93!ZBTB16;;chr8:48650715..48650735,-!p1@CEBPD!1.03!1244.07!CEBPD;;chr16:54320101..54320125,-!p4@IRX3!1.03!13.90!IRX3;;chr3:126076264..126076305,-!p2@KLF15!1.02!13.24!KLF15;;chr10:111985713..111985774,+!p2@MXI1!1.01!88.72!MXI1;;chr18:53068911..53068935,-!p4@TCF4!1.01!10.59!TCF4;;chr6:29648890..29648944,-!p1@ZFP57!1.01!9.27!ZFP57;;chr1:170633058..170633084,+!p5@PRRX1!1.01!9.27!PRRX1;;chr14:73360799..73360817,-!p1@DPF3!1.00!31.78!DPF3;;chr2:46524537..46524553,+!p1@EPAS1!0.99!875.95!EPAS1;;chr16:79634624..79634642,-!p1@MAF!0.99!35.09!MAF;;chr17:1959369..1959388,+!p2@HIC1!0.99!23.84!HIC1;;chr1:61548225..61548299,+!p1@NFIA!0.98!115.87!NFIA;;chr1:170633348..170633399,+!p2@PRRX1!0.98!11.92!PRRX1;;chr5:153857800..153857812,-!p2@HAND1!0.98!8.61!HAND1;;chr15:96873984..96873999,+!p3@NR2F2!0.97!63.56!NR2F2;;chr9:102584262..102584276,+!p1@NR4A3!0.97!19.20!NR4A3;;chr17:7492684..7492778,-!p2@SOX15!0.97!17.88!SOX15;;chr19:45908292..45908374,-!p1@PPP1R13L!0.96!73.49!PPP1R13L;;chr1:8483756..8483809,-!p5@RERE!0.96!23.17!RERE;;chrX:107019163..107019179,-!p7@TSC22D3!0.95!9.27!TSC22D3;;chr2:60780753..60780800,-!p1@BCL11A!0.93!38.40!BCL11A;;chr12:10875831..10876025,-!p1@CSDA!0.92!632.30!CSDA;;chr3:69915385..69915438,+!p3@MITF!0.92!7.28!MITF;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!0.92!7.28!PEG3;;chr6:126070748..126070768,+!p2@HEY2!0.92!7.28!HEY2;;chr17:38256822..38256851,-!p1@NR1D1!0.91!58.93!NR1D1;;chrX:70315688..70315709,+!p1@FOXO4!0.91!17.21!FOXO4;;chr1:170632959..170632987,+!p4@PRRX1!0.91!7.95!PRRX1;;chr13:45010939..45011033,-!p1@TSC22D1!0.90!475.38!TSC22D1;;chr17:40540377..40540481,-!p1@STAT3!0.90!365.47!STAT3;;chr1:61548374..61548415,+!p4@NFIA!0.90!13.24!NFIA;;chr3:1143437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|expression_enrichment_score=chr5:172662197..172662216,-!p1@NKX2-5!2.37!231.07!NKX2-5;;chr15:42749722..42749739,-!p2@ZFP106!2.24!302.58!ZFP106;;chr20:62680984..62680999,-!p1@SOX18!2.15!183.40!SOX18;;chr7:35293685..35293718,-!p1@TBX20!2.10!124.47!TBX20;;chr12:52437488..52437507,+!p2@NR4A1!1.98!95.34!NR4A1;;chr4:174451370..174451387,-!p1@HAND2!1.94!86.07!HAND2;;chr8:11561684..11561751,+!p1@GATA4!1.80!61.57!GATA4;;chr16:54320617..54320643,-!p3@IRX3!1.77!72.83!IRX3;;chr1:40105299..40105326,-!p1@HEYL!1.76!56.28!HEYL;;chr1:214161272..214161322,+!p1@PROX1!1.74!74.82!PROX1;;chr19:46801639..46801699,+!p1@HIF3A!1.70!49.66!HIF3A;;chr14:105935396..105935413,+!p4@MTA1!1.68!47.01!MTA1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.67!45.68!ZBED1;;chr12:10875658..10875708,-!p2@CSDA!1.63!92.03!CSDA;;chr16:54320646..54320672,-!p2@IRX3!1.58!56.28!IRX3;;chr4:174451350..174451363,-!p3@HAND2!1.55!34.43!HAND2;;chr18:19749541..19749557,+!p1@GATA6!1.53!99.98!GATA6;;chr6:126070769..126070801,+!p1@HEY2!1.52!36.42!HEY2;;chr11:113930425..113930471,+!p1@ZBTB16!1.51!44.36!ZBTB16;;chr18:19749386..19749404,+!p2@GATA6!1.50!43.70!GATA6;;chr8:55370487..55370503,+!p1@SOX17!1.50!30.46!SOX17;;chr11:47400078..47400106,-!p1@SPI1!1.48!29.13!SPI1;;chr11:46337652..46337682,+!p16@CREB3L1!1.47!28.47!CREB3L1;;chr4:174450089..174450153,-!p2@HAND2!1.46!27.81!HAND2;;chr8:10588010..10588030,-!p1@SOX7!1.41!24.50!SOX7;;chr3:126076242..126076257,-!p1@KLF15!1.37!27.81!KLF15;;chr6:134210243..134210257,+!p1@TCF21!1.37!22.51!TCF21;;chr21:39870339..39870443,-!p1@ERG!1.29!18.54!ERG;;chr3:69788576..69788648,+!p1@MITF!1.28!94.68!MITF;;chr4:57547454..57547469,-!p1@HOPX!1.28!17.88!HOPX;;chr17:46126136..46126152,+!p1@NFE2L1!1.27!869.33!NFE2L1;;chr16:54964899..54964914,+!p2@IRX5!1.24!16.55!IRX5;;chr5:172662303..172662320,-!p2@NKX2-5!1.24!16.55!NKX2-5;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!1.23!15.89!SEBOX;;chr5:153857778..153857794,-!p1@HAND1!1.21!15.23!HAND1;;chr17:6926362..6926377,+!p1@BCL6B!1.19!14.57!BCL6B;;chr8:106330656..106330684,+!p1@ZFPM2!1.18!37.08!ZFPM2;;chr5:71803177..71803255,-!p1@ZNF366!1.17!13.90!ZNF366;;chr18:19749517..19749531,+!p3@GATA6!1.13!22.51!GATA6;;chr8:25902876..25902936,-!p1@EBF2!1.13!12.58!EBF2;;chr19:46800289..46800327,+!p2@HIF3A!1.13!12.58!HIF3A;;chr17:53342311..53342400,+!p1@HLF!1.12!13.90!HLF;;chr2:242556880..242556899,-!p5@THAP4!1.11!11.92!THAP4;;chr16:79634595..79634620,-!p2@MAF!1.09!20.52!MAF;;chr19:22193731..22193751,-!p1@ZNF208!1.09!11.26!ZNF208;;chr11:47400062..47400077,-!p2@SPI1!1.09!11.26!SPI1;;chr1:151804244..151804310,-!p1@RORC!1.09!11.26!RORC;;chr1:216896752..216896778,-!p1@ESRRG!1.09!11.26!ESRRG;;chr1:27240455..27240474,-!p1@NR0B2!1.09!11.26!NR0B2;;chr5:172662230..172662241,-!p3@NKX2-5!1.09!11.26!NKX2-5;;chr16:54320675..54320715,-!p1@IRX3!1.08!23.84!IRX3;;chr7:150945754..150945789,-!p2@SMARCD3!1.07!33.77!SMARCD3;;chr7:15726243..15726293,-!p2@MEOX2!1.06!10.59!MEOX2;;chr10:131762504..131762555,-!p1@EBF3!1.06!10.59!EBF3;;chr1:216896780..216896800,-!p2@ESRRG!1.06!10.59!ESRRG;;chr20:590944..590960,-!p1@TCF15!1.06!10.59!TCF15;;chr11:64073022..64073056,+!p1@ESRRA!1.04!120.50!ESRRA;;chr9:77112244..77112262,+!p1@RORB!1.04!11.26!RORB;;chr4:26165074..26165110,+!p9@RBPJ!1.04!9.93!RBPJ;;chr18:19749353..19749367,+!p4@GATA6!1.04!9.93!GATA6;;chr11:113930401..113930422,+!p3@ZBTB16!1.04!9.93!ZBTB16;;chr8:48650715..48650735,-!p1@CEBPD!1.03!1244.07!CEBPD;;chr16:54320101..54320125,-!p4@IRX3!1.03!13.90!IRX3;;chr3:126076264..126076305,-!p2@KLF15!1.02!13.24!KLF15;;chr10:111985713..111985774,+!p2@MXI1!1.01!88.72!MXI1;;chr18:53068911..53068935,-!p4@TCF4!1.01!10.59!TCF4;;chr6:29648890..29648944,-!p1@ZFP57!1.01!9.27!ZFP57;;chr1:170633058..170633084,+!p5@PRRX1!1.01!9.27!PRRX1;;chr14:73360799..73360817,-!p1@DPF3!1.00!31.78!DPF3;;chr2:46524537..46524553,+!p1@EPAS1!0.99!875.95!EPAS1;;chr16:79634624..79634642,-!p1@MAF!0.99!35.09!MAF;;chr17:1959369..1959388,+!p2@HIC1!0.99!23.84!HIC1;;chr1:61548225..61548299,+!p1@NFIA!0.98!115.87!NFIA;;chr1:170633348..170633399,+!p2@PRRX1!0.98!11.92!PRRX1;;chr5:153857800..153857812,-!p2@HAND1!0.98!8.61!HAND1;;chr15:96873984..96873999,+!p3@NR2F2!0.97!63.56!NR2F2;;chr9:102584262..102584276,+!p1@NR4A3!0.97!19.20!NR4A3;;chr17:7492684..7492778,-!p2@SOX15!0.97!17.88!SOX15;;chr19:45908292..45908374,-!p1@PPP1R13L!0.96!73.49!PPP1R13L;;chr1:8483756..8483809,-!p5@RERE!0.96!23.17!RERE;;chrX:107019163..107019179,-!p7@TSC22D3!0.95!9.27!TSC22D3;;chr2:60780753..60780800,-!p1@BCL11A!0.93!38.40!BCL11A;;chr12:10875831..10876025,-!p1@CSDA!0.92!632.30!CSDA;;chr3:69915385..69915438,+!p3@MITF!0.92!7.28!MITF;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!0.92!7.28!PEG3;;chr6:126070748..126070768,+!p2@HEY2!0.92!7.28!HEY2;;chr17:38256822..38256851,-!p1@NR1D1!0.91!58.93!NR1D1;;chrX:70315688..70315709,+!p1@FOXO4!0.91!17.21!FOXO4;;chr1:170632959..170632987,+!p4@PRRX1!0.91!7.95!PRRX1;;chr13:45010939..45011033,-!p1@TSC22D1!0.90!475.38!TSC22D1;;chr17:40540377..40540481,-!p1@STAT3!0.90!365.47!STAT3;;chr1:61548374..61548415,+!p4@NFIA!0.90!13.24!NFIA;;chr3:1143437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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000948;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004151;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007100
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006603,UBERON:0010226,UBERON:0010316
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 37: Line 42:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/left%2520ventricle%252c%2520adult%252c%2520donor1.CNhs11789.10078-102A6.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/left%2520ventricle%252c%2520adult%252c%2520donor1.CNhs11789.10078-102A6.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/left%2520ventricle%252c%2520adult%252c%2520donor1.CNhs11789.10078-102A6.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/left%2520ventricle%252c%2520adult%252c%2520donor1.CNhs11789.10078-102A6.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/left%2520ventricle%252c%2520adult%252c%2520donor1.CNhs11789.10078-102A6.hg38.nobarcode.ctss.bed.gz
|id=FF:10078-102A6
|id=FF:10078-102A6
|is_a=EFO:0002091;;FF:0010078
|is_a=EFO:0002091;;FF:0010078
|is_obsolete=
|is_obsolete=
|library_id=CNhs11789
|library_id_phase_based=2:CNhs11789
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10078
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10078
|name=left ventricle, adult, donor1
|name=left ventricle, adult, donor1
|namespace=FANTOM5
|namespace=FANTOM5
Line 45: Line 61:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs11789,LSID820,release009,COMPLETED
|profile_hcage=CNhs11789,LSID820,release009,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|rna_catalog_number=Cat:AM6856
Line 60: Line 79:
|rna_weight_ug=100
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|sample_age=
|sample_age=
|sample_category=tissues
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|sample_cell_line=
|sample_cell_line=
Line 81: Line 101:
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|top_motifs=MEF2{A,B,C,D}:6.00321535789;NR5A1,2:4.94082547993;ESRRA:4.05588389976;NFE2L1:3.60159021376;NR1H4:3.07217684392;AR:2.97159841287;NKX2-2,8:2.61880460197;PAX6:2.32216341411;GATA4:2.30550453688;FOXL1:2.28977270132;IKZF1:2.22986185718;MAFB:2.16813961226;HOX{A4,D4}:2.09072180466;TFAP2{A,C}:1.90725528224;NR6A1:1.87676850487;SRF:1.85783593682;TFAP4:1.80452060242;RBPJ:1.63566333828;TGIF1:1.61554181865;NFIX:1.61434141883;NFATC1..3:1.60223360745;RXR{A,B,G}:1.53071560207;SPZ1:1.39425814491;HAND1,2:1.3872795988;GFI1B:1.35015147243;MTF1:1.34312998215;MYOD1:1.30517023471;EP300:1.23643772873;RORA:1.22052674776;GCM1,2:1.2058212636;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.1946674358;HIC1:1.19420876855;IKZF2:1.1890061538;CUX2:1.17377570448;UFEwm:1.168915465;NHLH1,2:1.16434723822;GATA6:1.06967974033;EN1,2:1.06897615052;KLF4:1.05429826893;TLX1..3_NFIC{dimer}:1.0163015758;NR3C1:1.01382544562;TFCP2:0.974563438168;SMAD1..7,9:0.965575120507;SOX5:0.964688132702;CDX1,2,4:0.951518826659;TBP:0.942555878991;TLX2:0.829657253111;FOXO1,3,4:0.820896236921;XBP1:0.817202442942;PPARG:0.81561050606;TBX4,5:0.814269012136;PATZ1:0.805500268674;MYBL2:0.787704403082;TEAD1:0.770198829311;HOX{A6,A7,B6,B7}:0.739766509939;PDX1:0.737335179624;FOXP3:0.68809239506;TFAP2B:0.647154292388;POU3F1..4:0.629716996296;POU6F1:0.596985121739;FOXQ1:0.586101278028;FOX{D1,D2}:0.580457741509;EVI1:0.573890313985;PRDM1:0.524465507147;MED-1{core}:0.52081581477;GTF2A1,2:0.511454106752;SP1:0.501446766956;ZNF423:0.491186293882;ARID5B:0.480862905374;MAZ:0.462034580771;REST:0.421714410306;LMO2:0.419509221662;PAX5:0.411470811645;HNF4A_NR2F1,2:0.408115763787;NKX3-2:0.375725681093;ZNF238:0.372604245579;STAT2,4,6:0.369515881958;HOX{A5,B5}:0.330531615921;ATF2:0.308832620951;ESR1:0.303562925575;PAX1,9:0.301244910296;ALX1:0.280925629952;JUN:0.260980890672;IRF7:0.239947641303;PBX1:0.197521699711;NANOG:0.182670026248;MYFfamily:0.179519929495;LEF1_TCF7_TCF7L1,2:0.140814575971;HMX1:0.140235619772;BREu{core}:0.123800397791;HSF1,2:0.123483067294;POU1F1:0.114565825039;NKX2-1,4:0.108814885893;RREB1:0.0654602384441;ZFP161:0.0569504402036;FOXA2:0.0501666222329;GTF2I:0.0472991287809;MTE{core}:0.0417586784454;SOX{8,9,10}:0.0254352856157;ZIC1..3:-0.00780357943024;HMGA1,2:-0.00872923373473;NKX6-1,2:-0.0159316333485;ETS1,2:-0.0566355666371;STAT5{A,B}:-0.0688855689696;MZF1:-0.069154601768;ZEB1:-0.075487306558;EGR1..3:-0.0857646000559;CDC5L:-0.122910972402;ATF6:-0.136134711654;EBF1:-0.143476214339;ATF4:-0.14457997166;FOXN1:-0.14706887605;ZNF148:-0.154921508261;STAT1,3:-0.155193044804;XCPE1{core}:-0.155217359494;SREBF1,2:-0.160138219536;GZF1:-0.164790342244;FOSL2:-0.195843842181;IRF1,2:-0.211252167848;T:-0.230985441319;SPI1:-0.236186593512;NKX3-1:-0.253902355372;GLI1..3:-0.259744824381;CEBPA,B_DDIT3:-0.268560942673;SNAI1..3:-0.268854721403;ZBTB16:-0.275831626393;HNF1A:-0.279933395076;BPTF:-0.298255377431;NANOG{mouse}:-0.305853705788;TOPORS:-0.347882749799;ATF5_CREB3:-0.374389773928;SOX17:-0.378601993995;SPIB:-0.398870750369;NFE2:-0.44049268475;VSX1,2:-0.441786089634;DMAP1_NCOR{1,2}_SMARC:-0.458486689536;HLF:-0.46383259474;ZNF384:-0.492797555416;LHX3,4:-0.493101954687;GFI1:-0.497195968145;YY1:-0.536644653974;PAX2:-0.55303897663;HOXA9_MEIS1:-0.563654751776;TP53:-0.582437343684;RXRA_VDR{dimer}:-0.591386408415;NFE2L2:-0.611776140959;NFKB1_REL_RELA:-0.626986291076;FOX{F1,F2,J1}:-0.63606819754;HES1:-0.651334838985;FOS_FOS{B,L1}_JUN{B,D}:-0.678360965889;BACH2:-0.682340104137;TEF:-0.723618806411;ALX4:-0.752122931879;ZBTB6:-0.754953342335;RFX2..5_RFXANK_RFXAP:-0.759140595595;FOXM1:-0.767339124092;NFIL3:-0.767742837726;RUNX1..3:-0.820143365825;ZNF143:-0.827894745799;ELF1,2,4:-0.854298912585;NRF1:-0.876650380374;ADNP_IRX_SIX_ZHX:-0.900254110713;FOX{I1,J2}:-0.924894242187;CREB1:-0.925462936329;FOXD3:-0.930603231971;RFX1:-0.938836606741;TFDP1:-0.966147116073;POU5F1:-1.08960448783;NFY{A,B,C}:-1.11038673591;CRX:-1.12234647285;PRRX1,2:-1.12602246585;ONECUT1,2:-1.16672668001;OCT4_SOX2{dimer}:-1.17817195532;E2F1..5:-1.20596900585;TAL1_TCF{3,4,12}:-1.22919483945;SOX2:-1.30158137723;HBP1_HMGB_SSRP1_UBTF:-1.32643648432;HIF1A:-1.35665736759;DBP:-1.3893216698;PITX1..3:-1.40042326732;AIRE:-1.42724266143;NKX2-3_NKX2-5:-1.45363973816;POU2F1..3:-1.5011645744;MYB:-1.55305786772;bHLH_family:-1.55554088821;PAX3,7:-1.55967347326;FOXP1:-1.57016717276;AHR_ARNT_ARNT2:-1.6151663617;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.7447925346;ELK1,4_GABP{A,B1}:-1.76692191243;PAX8:-1.79606760002;PAX4:-2.30299101999
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10078-102A6;search_select_hide=table117:FF:10078-102A6
}}
}}

Latest revision as of 12:20, 3 June 2020

Name:left ventricle, adult, donor1
Species:Human (Homo sapiens)
Library ID:CNhs11789
Sample type:tissues
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueleft ventricle
dev stage73 years old adult
sexfemale
ageNA
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyAmbion
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number5060611
catalog numberCat:AM6856
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-ToTALLY-RNA-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004828
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11789 CAGE DRX008673 DRR009545
Accession ID Hg19

Library idBAMCTSS
CNhs11789 DRZ000970 DRZ002355
Accession ID Hg38

Library idBAMCTSS
CNhs11789 DRZ012320 DRZ013705
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.607
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.368
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0.366
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.221
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0702
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.81
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.221
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0.221
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0.983
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.69
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.4
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0.221
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.37
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.167
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.221
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.221
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.0766
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.55
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.11
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.221
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.221
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0.221
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus1.122
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0.221
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0.221
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11789

Jaspar motifP-value
MA0002.20.225
MA0003.10.0275
MA0004.10.00992
MA0006.10.178
MA0007.10.186
MA0009.10.0104
MA0014.10.686
MA0017.10.0401
MA0018.20.0123
MA0019.10.0364
MA0024.10.00443
MA0025.10.194
MA0027.10.787
MA0028.19.11864e-9
MA0029.10.699
MA0030.10.92
MA0031.10.865
MA0035.22.1763e-4
MA0038.10.00107
MA0039.20.214
MA0040.10.83
MA0041.10.151
MA0042.10.355
MA0043.17.83593e-4
MA0046.10.0198
MA0047.20.409
MA0048.10.00195
MA0050.10.022
MA0051.10.195
MA0052.11.57711e-32
MA0055.10.0123
MA0057.10.289
MA0058.18.24544e-4
MA0059.10.0193
MA0060.11.77662e-5
MA0061.10.00864
MA0062.21.40854e-15
MA0065.20.00233
MA0066.10.193
MA0067.10.298
MA0068.10.164
MA0069.10.52
MA0070.10.533
MA0071.10.0395
MA0072.10.81
MA0073.10.877
MA0074.10.477
MA0076.15.49531e-10
MA0077.10.35
MA0078.10.593
MA0079.20.183
MA0080.29.54762e-4
MA0081.10.0275
MA0083.10.0065
MA0084.10.979
MA0087.10.484
MA0088.10.011
MA0090.10.0413
MA0091.10.0786
MA0092.10.057
MA0093.10.00597
MA0099.21.92071e-9
MA0100.10.0336
MA0101.10.0753
MA0102.20.206
MA0103.10.975
MA0104.21.34472e-4
MA0105.10.0199
MA0106.10.168
MA0107.10.0394
MA0108.28.43593e-12
MA0111.10.259
MA0112.20.00107
MA0113.10.00486
MA0114.10.0832
MA0115.10.125
MA0116.10.577
MA0117.10.253
MA0119.10.164
MA0122.10.137
MA0124.10.891
MA0125.10.322
MA0131.10.018
MA0135.10.597
MA0136.11.13825e-8
MA0137.20.655
MA0138.20.128
MA0139.10.405
MA0140.10.0535
MA0141.13.21661e-7
MA0142.10.146
MA0143.10.576
MA0144.10.951
MA0145.10.0443
MA0146.10.766
MA0147.13.42518e-4
MA0148.10.386
MA0149.10.948
MA0150.10.149
MA0152.10.256
MA0153.10.717
MA0154.10.256
MA0155.10.028
MA0156.13.909e-8
MA0157.10.946
MA0159.10.00997
MA0160.12.16462e-4
MA0162.10.154
MA0163.10.09
MA0164.10.714
MA0258.10.00363
MA0259.10.0459



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11789

Novel motifP-value
10.701
100.205
1000.962
1010.526
1020.658
1030.827
1040.651
1050.49
1060.0288
1070.0251
1080.323
1090.705
110.443
1100.389
1110.97
1120.203
1130.4
1140.689
1150.164
1160.602
1170.0486
1180.246
1190.0494
120.535
1200.155
1210.571
1220.914
1230.055
1240.749
1250.408
1260.707
1270.485
1280.0911
1290.509
130.451
1300.644
1310.0458
1320.0564
1330.226
1340.165
1350.202
1360.824
1370.584
1380.461
1390.222
140.709
1400.428
1410.37
1420.485
1430.614
1440.55
1450.919
1460.481
1470.0295
1480.223
1490.0443
150.65
1500.514
1510.277
1520.122
1530.287
1540.61
1550.789
1560.214
1570.704
1580.34
1590.308
160.626
1600.164
1610.695
1620.917
1630.631
1640.128
1650.748
1660.0742
1670.38
1680.0891
1690.0317
170.435
180.506
190.0445
20.0773
200.0469
210.78
220.101
230.012
240.0686
250.963
260.426
270.185
280.73
290.0738
30.648
300.15
310.499
320.428
330.994
340.0921
350.739
360.451
370.844
380.541
390.142
40.778
400.456
410.409
420.326
430.61
440.00333
450.144
460.542
470.734
480.584
490.648
50.532
500.828
510.961
520.0434
530.571
540.663
550.829
560.99
570.572
580.773
590.159
60.783
600.062
610.21
620.273
630.578
640.881
650.0841
660.0152
670.551
680.386
690.337
70.78
700.776
710.639
720.495
730.499
740.294
750.172
760.134
770.0819
780.375
790.118
80.329
800.329
810.592
820.17
830.308
840.371
850.00552
860.917
870.319
880.885
890.107
90.348
900.232
910.11
920.115
930.642
940.356
950.223
960.394
970.714
980.111
990.0523



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11789


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0007100 (primary circulatory organ)
0000948 (heart)
0002084 (heart left ventricle)
0000479 (tissue)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0004151 (cardiac chamber)
0002082 (cardiac ventricle)
0010317 (germ layer / neural crest derived structure)
0004535 (cardiovascular system)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010078 (human left ventricle - adult sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0010226 (future cardiac ventricle)
UBERON:0010316 (germ layer / neural crest)

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