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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005100
|DRA_sample_Accession_RNASeq=RNA-Seq@SAMD00005100
|accession_numbers=CAGE;DRX008612;DRR009484;DRZ000909;DRZ002294;DRZ012259;DRZ013644
|accession_numbers_RNASeq=RNA-Seq;DRX057113;DRR062872;DRZ007948
|ancestors_in_anatomy_facet=UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
|ancestors_in_anatomy_facet=UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
|ancestors_in_cell_lineage_facet=
|ancestors_in_cell_lineage_facet=
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!3.32!2111.55!SEBOX;;chr4:57547454..57547469,-!p1@HOPX!2.64!435.13!HOPX;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!2.60!395.40!SEBOX;;chr17:26697257..26697268,-!p3@SEBOX,p3@VTN!2.20!159.20!SEBOX;;chr6:134210243..134210257,+!p1@TCF21!2.16!142.16!TCF21;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.03!106.57!PEG3;;chr1:214161272..214161322,+!p1@PROX1!1.79!83.69!PROX1;;chr6:53013620..53013644,-!p1@GCM1!1.79!61.10!GCM1;;chr7:73038839..73038862,-!p1@MLXIPL!1.73!53.19!MLXIPL;;chr8:135708787..135708805,-!p2@ZFAT!1.72!51.12!ZFAT;;chr11:47400078..47400106,-!p1@SPI1!1.70!49.14!SPI1;;chr15:53082521..53082549,-!p1@ONECUT1!1.70!48.86!ONECUT1;;chr1:151804244..151804310,-!p1@RORC!1.68!47.35!RORC;;chr6:10412600..10412637,-!p1@TFAP2A!1.67!75.41!TFAP2A;;chr17:53344945..53344977,+!p2@HLF!1.64!42.84!HLF;;chrX:131547625..131547644,-!p4@MBNL3!1.62!40.67!MBNL3;;chr2:68592406..68592424,+!p1@PLEK!1.59!37.75!PLEK;;chr20:43029862..43029900,+!p1@HNF4A!1.58!37.38!HNF4A;;chr17:53344980..53345011,+!p3@HLF!1.58!37.09!HLF;;chr6:10415276..10415341,-!p2@TFAP2A!1.57!43.87!TFAP2A;;chr12:100867653..100867677,+!p2@NR1H4!1.56!35.59!NR1H4;;chr21:39870339..39870443,-!p1@ERG!1.56!34.93!ERG;;chr19:33793430..33793447,-!p1@CEBPA!1.54!135.38!CEBPA;;chr1:201979703..201979721,+!p2@ELF3!1.54!33.80!ELF3;;chr16:86544113..86544145,+!p1@FOXF1!1.52!39.92!FOXF1;;chr1:201979743..201979762,+!p1@ELF3!1.51!31.73!ELF3;;chr8:10588010..10588030,-!p1@SOX7!1.50!30.31!SOX7;;chr20:62680984..62680999,-!p1@SOX18!1.47!37.09!SOX18;;chr1:27240455..27240474,-!p1@NR0B2!1.45!27.30!NR0B2;;chrX:66763856..66763896,+!p1@AR!1.44!37.85!AR;;chr4:174451370..174451387,-!p1@HAND2!1.42!25.32!HAND2;;chr3:128212033..128212051,-!p1@GATA2!1.41!24.57!GATA2;;chr22:41763452..41763466,+!p2@TEF!1.39!23.63!TEF;;chr2:46524897..46524911,+!p2@EPAS1!1.38!62.89!EPAS1;;chr16:85932760..85932775,+!p1@IRF8!1.38!23.25!IRF8;;chr12:100867627..100867652,+!p1@NR1H4!1.38!23.16!NR1H4;;chr19:46367576..46367592,+!p1@FOXA3!1.38!22.88!FOXA3;;chr1:40105299..40105326,-!p1@HEYL!1.37!22.22!HEYL;;chr1:161208013..161208038,-!p1@NR1I3!1.36!22.12!NR1I3;;chr17:80797886..80797906,-!p1@ZNF750!1.35!21.28!ZNF750;;chr3:12330560..12330579,+!p1@PPARG!1.34!24.10!PPARG;;chr15:42749722..42749739,-!p2@ZFP106!1.32!35.02!ZFP106;;chr4:87857474..87857489,+!p7@AFF1!1.32!34.27!AFF1;;chr19:46801639..46801699,+!p1@HIF3A!1.32!20.05!HIF3A;;chr16:79634624..79634642,-!p1@MAF!1.31!75.22!MAF;;chr1:216896752..216896778,-!p1@ESRRG!1.31!19.21!ESRRG;;chrX:131547596..131547609,-!p10@MBNL3!1.30!18.92!MBNL3;;chr3:126076242..126076257,-!p1@KLF15!1.29!22.88!KLF15;;chr21:34442439..34442455,+!p1@OLIG1!1.28!18.26!OLIG1;;chr8:76319876..76319926,+!p1@HNF4G!1.28!18.08!HNF4G;;chr19:4153613..4153652,+!p1@CREB3L3!1.28!17.98!CREB3L3;;chr7:15726296..15726315,-!p1@MEOX2!1.28!17.89!MEOX2;;chr10:8096631..8096660,+!p1@GATA3!1.27!21.37!GATA3;;chr7:96654133..96654150,-!p1@DLX5!1.27!17.60!DLX5;;chr1:61548225..61548299,+!p1@NFIA!1.26!219.83!NFIA;;chr17:53342311..53342400,+!p1@HLF!1.26!19.68!HLF;;chr1:6479968..6479986,-!p1@HES2!1.25!16.76!HES2;;chr20:55204351..55204377,+!p1@TFAP2C!1.24!20.81!TFAP2C;;chr1:209979467..209979494,-!p1@IRF6!1.24!18.45!IRF6;;chr20:62365971..62365986,+!p5@ZGPAT!1.24!16.57!ZGPAT;;chr1:199996733..199996781,+!p1@NR5A2!1.24!16.48!NR5A2;;chr17:59529743..59529798,+!p1@TBX4!1.24!16.19!TBX4;;chr1:161207986..161207998,-!p2@NR1I3!1.23!15.91!NR1I3;;chr7:115670804..115670825,-!p1@TFEC!1.23!15.82!TFEC;;chr11:113930425..113930471,+!p1@ZBTB16!1.22!22.59!ZBTB16;;chr10:8096772..8096787,+!p2@GATA3!1.22!18.55!GATA3;;chr8:102504651..102504683,+!p1@GRHL2!1.22!15.63!GRHL2;;chrX:70319128..70319142,+!p3@FOXO4!1.22!15.53!FOXO4;;chrX:70316005..70316034,+!p2@FOXO4!1.21!27.68!FOXO4;;chr11:34642612..34642646,+!p1@EHF!1.20!14.97!EHF;;chr14:38064429..38064486,-!p1@FOXA1!1.18!14.12!FOXA1;;chr20:43030002..43030028,+!p3@HNF4A!1.18!14.12!HNF4A;;chr1:42801540..42801562,-!p4@FOXJ3!1.17!13.65!FOXJ3;;chr5:71803177..71803255,-!p1@ZNF366!1.17!13.65!ZNF366;;chr7:28725715..28725727,+!p3@CREB5!1.16!15.72!CREB5;;chr2:145277882..145277967,-!p3@ZEB2!1.14!22.12!ZEB2;;chr4:87856129..87856186,+!p1@AFF1!1.13!170.68!AFF1;;chr17:48072574..48072597,-!p1@DLX3!1.13!12.62!DLX3;;chr11:113930291..113930339,+!p2@ZBTB16!1.12!19.86!ZBTB16;;chr2:10091815..10091864,+!p1@GRHL1!1.12!16.10!GRHL1;;chr17:15942934..15942957,-!p5@NCOR1!1.12!12.33!NCOR1;;chr19:50432453..50432468,+!p1@ATF5!1.11!659.85!ATF5;;chr8:71316428..71316459,-!p2@NCOA2!1.11!20.05!NCOA2;;chr1:216896780..216896800,-!p2@ESRRG!1.11!11.86!ESRRG;;chr12:115122318..115122331,-!p2@TBX3!1.10!11.58!TBX3;;chr3:114819124..114819200,-!p3@ZBTB20!1.09!26.36!ZBTB20;;chr12:24715376..24715432,-!p1@SOX5!1.09!14.22!SOX5;;chr6:10415484..10415508,-!p3@TFAP2A!1.09!11.30!TFAP2A;;chr20:22564895..22564910,-!p1@FOXA2!1.09!11.30!FOXA2;;chr4:87856191..87856208,+!p2@AFF1!1.08!87.18!AFF1;;chr6:151977801..151977813,+!p8@ESR1!1.08!11.11!ESR1;;chr20:62365987..62365998,+!p8@ZGPAT!1.08!11.01!ZGPAT;;chr5:2751762..2751784,-!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Line 37: Line 42:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=PATO:0000461
|has_quality=PATO:0000461
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/Universal%2520RNA%2520-%2520Human%2520Normal%2520Tissues%2520Biochain%252c%2520pool1.CNhs10612.10007-101B4.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/Universal%2520RNA%2520-%2520Human%2520Normal%2520Tissues%2520Biochain%252c%2520pool1.CNhs10612.10007-101B4.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/Universal%2520RNA%2520-%2520Human%2520Normal%2520Tissues%2520Biochain%252c%2520pool1.CNhs10612.10007-101B4.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/Universal%2520RNA%2520-%2520Human%2520Normal%2520Tissues%2520Biochain%252c%2520pool1.CNhs10612.10007-101B4.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/Universal%2520RNA%2520-%2520Human%2520Normal%2520Tissues%2520Biochain%252c%2520pool1.CNhs10612.10007-101B4.hg38.nobarcode.ctss.bed.gz
|id=FF:10007-101B4
|id=FF:10007-101B4
|is_a=FF:0000004;;FF:0000210
|is_a=FF:0000004;;FF:0000210
|is_obsolete=
|is_obsolete=
|library_id=CNhs10612
|library_id_phase_based=2:CNhs10612
|name=Universal RNA - Human Normal Tissues Biochain, pool1
|name=Universal RNA - Human Normal Tissues Biochain, pool1
|namespace=
|namespace=
Line 45: Line 57:
|profile_cagescan=,,,
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|profile_hcage=CNhs10612,LSID656,release008,COMPLETED
|profile_hcage=CNhs10612,LSID656,release008,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
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Line 59: Line 74:
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|sample_cell_line=
Line 81: Line 98:
|top_motifs=HNF1A:6.206199919;HNF4A_NR2F1,2:6.20414706435;FOXA2:6.09055763221;RXR{A,B,G}_{NR1H2,PPAR}dimers:4.35633151755;FOX{F1,F2,J1}:3.92843373765;FOX{D1,D2}:3.31977493404;TBP:2.89587116945;STAT2,4,6:2.87827830829;NR6A1:2.61104828927;TFCP2:2.45213118036;AR:2.31726307156;FOXO1,3,4:2.30952220375;SP1:2.08228595159;HSF1,2:1.91479228087;FOX{I1,J2}:1.89653633008;MAZ:1.83486176725;TLX2:1.82864674351;EP300:1.77787295441;FOXQ1:1.67353246764;STAT1,3:1.53278318751;GATA6:1.43951661992;FOXD3:1.43442841718;HLF:1.41604847349;NKX3-2:1.41271324262;CUX2:1.4039393904;NFIL3:1.39795530052;TLX1..3_NFIC{dimer}:1.35438639345;PATZ1:1.28703090068;NR1H4:1.27902794072;HBP1_HMGB_SSRP1_UBTF:1.25711434342;BPTF:1.24237848461;NFATC1..3:1.22265944215;PPARG:1.20702472458;SNAI1..3:1.0773037029;MTF1:1.04945185303;ZNF423:1.03536070744;MED-1{core}:0.988707861868;ALX1:0.957048373755;SMAD1..7,9:0.934346920931;EVI1:0.906763236032;ZNF238:0.863563373772;HIC1:0.858758831155;XCPE1{core}:0.853095972767;MYOD1:0.837425696878;GFI1:0.813268949406;GZF1:0.786969665886;SREBF1,2:0.786290211119;PDX1:0.773449202459;ZEB1:0.765577123413;CEBPA,B_DDIT3:0.76471422366;GCM1,2:0.759952986442;IRF1,2:0.740328441745;TFAP2{A,C}:0.733259510289;ARID5B:0.73091190123;MYFfamily:0.720860149478;PAX6:0.714993384575;GTF2I:0.714504826258;IRF7:0.678451417334;PAX1,9:0.660722543802;SRF:0.652868230022;POU6F1:0.641749554664;TEAD1:0.615508179387;MTE{core}:0.61202400919;FOXP1:0.603932403409;TGIF1:0.587791554759;NFIX:0.566816024819;SOX5:0.563637087417;HMX1:0.537081120459;MAFB:0.467063429194;T:0.449396551819;ZNF148:0.419660648291;ATF6:0.418274235227;MYBL2:0.400351947632;TBX4,5:0.397654909358;RORA:0.389154344991;MZF1:0.38705883469;PAX5:0.386491832248;ESR1:0.370608804687;TOPORS:0.365400469527;ETS1,2:0.357764980915;ALX4:0.354933036861;IKZF1:0.336027063115;HOX{A6,A7,B6,B7}:0.320313825518;HOX{A4,D4}:0.273941124386;ADNP_IRX_SIX_ZHX:0.2649859136;FOXL1:0.259963663055;EBF1:0.249028878465;TFAP2B:0.247043101152;FOXP3:0.203244731384;TEF:0.183686526702;bHLH_family:0.180085785131;EGR1..3:0.164195277389;HAND1,2:0.157033888507;MEF2{A,B,C,D}:0.126204990714;ATF4:0.11594248023;FOXN1:0.110766831121;ZFP161:0.101107044412;EN1,2:0.0886744767314;GTF2A1,2:0.0804300936;TFAP4:0.0746772377719;ELF1,2,4:0.0741548056865;AIRE:0.0704529418348;NHLH1,2:0.0527800548926;RXR{A,B,G}:0.036974080387;FOXM1:0.0258613633751;GATA4:0.0121308602252;NR3C1:-0.00237916384674;POU2F1..3:-0.00319272630666;SPIB:-0.00562848295484;NFY{A,B,C}:-0.0241075085574;SPI1:-0.0295490333298;KLF4:-0.0386502765359;RREB1:-0.108979918157;SOX{8,9,10}:-0.114170599186;ATF2:-0.120223670554;VSX1,2:-0.134147627267;PRDM1:-0.139268390248;GFI1B:-0.166329088665;RBPJ:-0.186650661685;TAL1_TCF{3,4,12}:-0.207063360606;NANOG:-0.20884945012;LMO2:-0.212565232543;JUN:-0.220465112658;ZNF143:-0.240689494746;DMAP1_NCOR{1,2}_SMARC:-0.268287619058;DBP:-0.271049275012;NKX2-1,4:-0.307791406649;PBX1:-0.33699967835;ATF5_CREB3:-0.35386566571;NR5A1,2:-0.371412102262;TP53:-0.383265872571;SOX17:-0.394668248073;BREu{core}:-0.408894448624;PAX2:-0.429200003724;HES1:-0.440378806577;NFKB1_REL_RELA:-0.453145130536;HIF1A:-0.453505288386;NFE2L1:-0.469267219831;HMGA1,2:-0.485529427236;FOSL2:-0.501441981741;NRF1:-0.55732963045;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.565514630622;NFE2:-0.567524092563;IKZF2:-0.588580771301;ZIC1..3:-0.594505927595;RFX2..5_RFXANK_RFXAP:-0.605351774529;RXRA_VDR{dimer}:-0.61303782;ZBTB6:-0.644140656795;NFE2L2:-0.650262328207;RUNX1..3:-0.653924103954;UFEwm:-0.654297161754;REST:-0.666729927539;GLI1..3:-0.675581107531;LEF1_TCF7_TCF7L1,2:-0.680683621385;NANOG{mouse}:-0.685888079713;PRRX1,2:-0.739556405263;ZBTB16:-0.7694461573;RFX1:-0.777074167959;CDX1,2,4:-0.78770350635;HOX{A5,B5}:-0.818418359339;NKX2-2,8:-0.833083957806;FOS_FOS{B,L1}_JUN{B,D}:-0.835495367258;PITX1..3:-0.841651365648;SOX2:-0.842945494551;BACH2:-0.852960582369;ONECUT1,2:-0.865727443749;STAT5{A,B}:-0.898268802591;E2F1..5:-0.91784998529;AHR_ARNT_ARNT2:-0.922848577976;ESRRA:-0.985959105922;NKX2-3_NKX2-5:-1.00672063752;PAX4:-1.0098110346;CREB1:-1.02682169279;POU5F1:-1.10472620162;CDC5L:-1.11791076657;SPZ1:-1.13208459503;POU3F1..4:-1.14044767061;POU1F1:-1.20402043777;YY1:-1.22185149467;NKX3-1:-1.25683040956;MYB:-1.27317126127;XBP1:-1.30337681307;ZNF384:-1.33307324111;OCT4_SOX2{dimer}:-1.37195057208;TFDP1:-1.48652634875;PAX3,7:-1.50219543023;ELK1,4_GABP{A,B1}:-1.50296636772;CRX:-1.51430897529;HOXA9_MEIS1:-1.52906194524;LHX3,4:-1.66771450253;NKX6-1,2:-1.90951898978;PAX8:-2.35737439259
|top_motifs=HNF1A:6.206199919;HNF4A_NR2F1,2:6.20414706435;FOXA2:6.09055763221;RXR{A,B,G}_{NR1H2,PPAR}dimers:4.35633151755;FOX{F1,F2,J1}:3.92843373765;FOX{D1,D2}:3.31977493404;TBP:2.89587116945;STAT2,4,6:2.87827830829;NR6A1:2.61104828927;TFCP2:2.45213118036;AR:2.31726307156;FOXO1,3,4:2.30952220375;SP1:2.08228595159;HSF1,2:1.91479228087;FOX{I1,J2}:1.89653633008;MAZ:1.83486176725;TLX2:1.82864674351;EP300:1.77787295441;FOXQ1:1.67353246764;STAT1,3:1.53278318751;GATA6:1.43951661992;FOXD3:1.43442841718;HLF:1.41604847349;NKX3-2:1.41271324262;CUX2:1.4039393904;NFIL3:1.39795530052;TLX1..3_NFIC{dimer}:1.35438639345;PATZ1:1.28703090068;NR1H4:1.27902794072;HBP1_HMGB_SSRP1_UBTF:1.25711434342;BPTF:1.24237848461;NFATC1..3:1.22265944215;PPARG:1.20702472458;SNAI1..3:1.0773037029;MTF1:1.04945185303;ZNF423:1.03536070744;MED-1{core}:0.988707861868;ALX1:0.957048373755;SMAD1..7,9:0.934346920931;EVI1:0.906763236032;ZNF238:0.863563373772;HIC1:0.858758831155;XCPE1{core}:0.853095972767;MYOD1:0.837425696878;GFI1:0.813268949406;GZF1:0.786969665886;SREBF1,2:0.786290211119;PDX1:0.773449202459;ZEB1:0.765577123413;CEBPA,B_DDIT3:0.76471422366;GCM1,2:0.759952986442;IRF1,2:0.740328441745;TFAP2{A,C}:0.733259510289;ARID5B:0.73091190123;MYFfamily:0.720860149478;PAX6:0.714993384575;GTF2I:0.714504826258;IRF7:0.678451417334;PAX1,9:0.660722543802;SRF:0.652868230022;POU6F1:0.641749554664;TEAD1:0.615508179387;MTE{core}:0.61202400919;FOXP1:0.603932403409;TGIF1:0.587791554759;NFIX:0.566816024819;SOX5:0.563637087417;HMX1:0.537081120459;MAFB:0.467063429194;T:0.449396551819;ZNF148:0.419660648291;ATF6:0.418274235227;MYBL2:0.400351947632;TBX4,5:0.397654909358;RORA:0.389154344991;MZF1:0.38705883469;PAX5:0.386491832248;ESR1:0.370608804687;TOPORS:0.365400469527;ETS1,2:0.357764980915;ALX4:0.354933036861;IKZF1:0.336027063115;HOX{A6,A7,B6,B7}:0.320313825518;HOX{A4,D4}:0.273941124386;ADNP_IRX_SIX_ZHX:0.2649859136;FOXL1:0.259963663055;EBF1:0.249028878465;TFAP2B:0.247043101152;FOXP3:0.203244731384;TEF:0.183686526702;bHLH_family:0.180085785131;EGR1..3:0.164195277389;HAND1,2:0.157033888507;MEF2{A,B,C,D}:0.126204990714;ATF4:0.11594248023;FOXN1:0.110766831121;ZFP161:0.101107044412;EN1,2:0.0886744767314;GTF2A1,2:0.0804300936;TFAP4:0.0746772377719;ELF1,2,4:0.0741548056865;AIRE:0.0704529418348;NHLH1,2:0.0527800548926;RXR{A,B,G}:0.036974080387;FOXM1:0.0258613633751;GATA4:0.0121308602252;NR3C1:-0.00237916384674;POU2F1..3:-0.00319272630666;SPIB:-0.00562848295484;NFY{A,B,C}:-0.0241075085574;SPI1:-0.0295490333298;KLF4:-0.0386502765359;RREB1:-0.108979918157;SOX{8,9,10}:-0.114170599186;ATF2:-0.120223670554;VSX1,2:-0.134147627267;PRDM1:-0.139268390248;GFI1B:-0.166329088665;RBPJ:-0.186650661685;TAL1_TCF{3,4,12}:-0.207063360606;NANOG:-0.20884945012;LMO2:-0.212565232543;JUN:-0.220465112658;ZNF143:-0.240689494746;DMAP1_NCOR{1,2}_SMARC:-0.268287619058;DBP:-0.271049275012;NKX2-1,4:-0.307791406649;PBX1:-0.33699967835;ATF5_CREB3:-0.35386566571;NR5A1,2:-0.371412102262;TP53:-0.383265872571;SOX17:-0.394668248073;BREu{core}:-0.408894448624;PAX2:-0.429200003724;HES1:-0.440378806577;NFKB1_REL_RELA:-0.453145130536;HIF1A:-0.453505288386;NFE2L1:-0.469267219831;HMGA1,2:-0.485529427236;FOSL2:-0.501441981741;NRF1:-0.55732963045;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.565514630622;NFE2:-0.567524092563;IKZF2:-0.588580771301;ZIC1..3:-0.594505927595;RFX2..5_RFXANK_RFXAP:-0.605351774529;RXRA_VDR{dimer}:-0.61303782;ZBTB6:-0.644140656795;NFE2L2:-0.650262328207;RUNX1..3:-0.653924103954;UFEwm:-0.654297161754;REST:-0.666729927539;GLI1..3:-0.675581107531;LEF1_TCF7_TCF7L1,2:-0.680683621385;NANOG{mouse}:-0.685888079713;PRRX1,2:-0.739556405263;ZBTB16:-0.7694461573;RFX1:-0.777074167959;CDX1,2,4:-0.78770350635;HOX{A5,B5}:-0.818418359339;NKX2-2,8:-0.833083957806;FOS_FOS{B,L1}_JUN{B,D}:-0.835495367258;PITX1..3:-0.841651365648;SOX2:-0.842945494551;BACH2:-0.852960582369;ONECUT1,2:-0.865727443749;STAT5{A,B}:-0.898268802591;E2F1..5:-0.91784998529;AHR_ARNT_ARNT2:-0.922848577976;ESRRA:-0.985959105922;NKX2-3_NKX2-5:-1.00672063752;PAX4:-1.0098110346;CREB1:-1.02682169279;POU5F1:-1.10472620162;CDC5L:-1.11791076657;SPZ1:-1.13208459503;POU3F1..4:-1.14044767061;POU1F1:-1.20402043777;YY1:-1.22185149467;NKX3-1:-1.25683040956;MYB:-1.27317126127;XBP1:-1.30337681307;ZNF384:-1.33307324111;OCT4_SOX2{dimer}:-1.37195057208;TFDP1:-1.48652634875;PAX3,7:-1.50219543023;ELK1,4_GABP{A,B1}:-1.50296636772;CRX:-1.51430897529;HOXA9_MEIS1:-1.52906194524;LHX3,4:-1.66771450253;NKX6-1,2:-1.90951898978;PAX8:-2.35737439259
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10007-101B4;search_select_hide=table117:FF:10007-101B4
}}
}}

Latest revision as of 12:13, 3 June 2020

Name:Universal RNA - Human Normal Tissues Biochain, pool1
Species:Human (Homo sapiens)
Library ID:CNhs10612
Sample type:tissues
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueunclassifiable
dev stage34-76 years old adult
sexmixed
ageNA
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyBiochain
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberB208251
catalog numberCat:R4234565-1
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005100
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs10612 CAGE DRX008612 DRR009484
Accession ID Hg19

Library idBAMCTSS
CNhs10612 DRZ000909 DRZ002294
Accession ID Hg38

Library idBAMCTSS
CNhs10612 DRZ012259 DRZ013644
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
RNA-Seq  SAMD00005100
Library accession numbers

Library idMethodExp. accession idRun accession id
RDhi10055 RNA-Seq DRX057113 DRR062872
Accession ID Hg19

Library idBAMCTSS
RDhi10055 DRZ007948


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.00206
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0.0391
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.233
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0.244
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.049
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0.538
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40.0391
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0.168
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0.0389
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0.391
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.0391
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0.0749
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.0749
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0.108
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.445
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0.0391
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.107
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.21
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0.0391
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.196
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.168
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0.0391
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40.0391
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0.0391
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.0703
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.0963
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0.674
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0.319
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0.0668
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.0634
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.0391
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0.108
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0.244
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0.0391
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0.0391
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.655
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0.0391
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.293
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.271
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.108
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0.116
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.0749
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0.108
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.0555
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0.0391
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0.0391
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.0391
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0.0391
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.0391
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.406
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.0391
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0.365
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.328
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0.0391
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0.0391
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.0132
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.0915
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0.347
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0.108
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.168
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0.0391
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0.538
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0.0391
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0.642
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0.139
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0.0391
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.162
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.0749
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0.0391
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0.168
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0.0503
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.22
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0.0749
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0.0391
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0.244
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0.0391
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10612

Jaspar motifP-value
MA0002.20.0588
MA0003.10.0302
MA0004.10.464
MA0006.10.0461
MA0007.10.0969
MA0009.10.208
MA0014.10.553
MA0017.15.89941e-21
MA0018.20.248
MA0019.10.247
MA0024.10.0197
MA0025.10.0172
MA0027.10.731
MA0028.12.59179e-5
MA0029.10.829
MA0030.11.33758e-9
MA0031.12.73965e-9
MA0035.20.00391
MA0038.10.152
MA0039.20.0353
MA0040.10.159
MA0041.10.409
MA0042.10.437
MA0043.10.457
MA0046.12.14936e-78
MA0047.21.52211e-12
MA0048.10.0385
MA0050.10.0824
MA0051.10.333
MA0052.10.939
MA0055.10.0795
MA0057.10.713
MA0058.10.463
MA0059.10.115
MA0060.10.498
MA0061.16.74888e-4
MA0062.24.39529e-8
MA0065.27.05442e-6
MA0066.10.694
MA0067.10.0349
MA0068.10.00133
MA0069.10.511
MA0070.10.3
MA0071.10.714
MA0072.10.29
MA0073.10.812
MA0074.10.958
MA0076.16.83567e-6
MA0077.10.32
MA0078.10.0556
MA0079.20.127
MA0080.20.669
MA0081.10.0917
MA0083.10.575
MA0084.10.685
MA0087.10.2
MA0088.10.235
MA0090.10.00757
MA0091.10.726
MA0092.10.641
MA0093.10.468
MA0099.28.43269e-15
MA0100.10.182
MA0101.10.00167
MA0102.20.0558
MA0103.10.0779
MA0104.20.00651
MA0105.11.61721e-4
MA0106.10.573
MA0107.10.00163
MA0108.23.44803e-16
MA0111.10.96
MA0112.20.0343
MA0113.10.00838
MA0114.14.82534e-24
MA0115.17.30547e-6
MA0116.10.566
MA0117.10.316
MA0119.10.447
MA0122.10.605
MA0124.10.18
MA0125.10.16
MA0131.10.389
MA0135.10.38
MA0136.10.103
MA0137.27.2074e-6
MA0138.20.585
MA0139.10.881
MA0140.10.257
MA0141.10.0119
MA0142.10.779
MA0143.10.788
MA0144.12.64881e-4
MA0145.10.0146
MA0146.10.429
MA0147.10.00149
MA0148.16.72546e-9
MA0149.10.0307
MA0150.10.0153
MA0152.10.0039
MA0153.15.52268e-43
MA0154.10.524
MA0155.10.29
MA0156.10.0503
MA0157.19.36206e-4
MA0159.10.00895
MA0160.10.0401
MA0162.10.688
MA0163.10.0297
MA0164.10.194
MA0258.10.126
MA0259.10.0135



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10612

Novel motifP-value
10.539
100.129
1000.876
1010.777
1020.0109
1030.738
1040.927
1050.721
1060.247
1070.0347
1080.775
1090.713
110.794
1100.641
1110.0195
1120.332
1130.072
1140.413
1150.72
1160.588
1170.0817
1180.734
1190.427
120.527
1200.414
1210.667
1220.953
1230.269
1240.504
1250.0891
1260.19
1270.00971
1280.737
1290.986
130.596
1300.551
1310.0799
1320.281
1330.425
1340.211
1350.18
1360.57
1370.598
1380.578
1390.332
140.468
1400.519
1410.677
1420.811
1430.00106
1440.071
1450.458
1460.0373
1470.939
1480.937
1490.487
150.501
1500.779
1510.599
1520.111
1530.844
1540.203
1550.63
1560.522
1570.793
1580.281
1590.495
160.621
1600.663
1610.839
1620.91
1630.929
1640.235
1650.0147
1660.622
1670.076
1680.461
1690.109
170.85
180.0112
190.0228
20.039
200.196
210.321
220.142
230.0868
240.84
250.585
260.678
270.569
280.746
290.0705
30.818
300.0294
310.733
320.606
330.634
340.178
350.411
360.125
370.729
380.636
390.103
40.0406
400.98
410.0281
420.838
430.994
440.553
450.0431
460.534
470.632
480.868
490.994
50.84
500.324
510.853
520.0656
530.775
540.742
550.794
560.711
570.16
580.657
590.441
60.371
600.234
610.453
620.938
630.485
640.673
650.499
660.0883
670.102
680.284
690.296
70.487
700.309
710.477
720.405
730.618
740.358
750.0665
760.00906
770.00629
780.593
790.4
80.949
800.136
810.336
820.99
830.752
840.754
850.497
860.965
870.356
880.421
890.686
90.37
900.493
910.547
920.762
930.942
940.0952
950.237
960.968
970.239
980.431
990.19



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs10612


FANTOM5 (FF) ontology

Direct parent terms

has_quality relathionship
PATO:0000461

Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

UBERON: Anatomy
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000004 (tissue sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

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