FF:10168-103B6: Difference between revisions

Latest revision as of 12:24, 3 June 2020

Name:	thalamus - adult, donor10196
Species:	Human (Homo sapiens)
Library ID:	CNhs13794
Sample type:	tissues
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	thalamus
dev stage	NA
sex	female
age	60
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	NA
collaboration	Peter Heutink
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004703

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13794		CAGE		DRX008741		DRR009613

Accession ID Hg19

Library id		BAM		CTSS
CNhs13794		DRZ001038		DRZ002423

Accession ID Hg38

Library id		BAM		CTSS
CNhs13794		DRZ012388		DRZ013773

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0.262
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.735
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.394
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0.425
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0.262
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0.425
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.175
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.714
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0353
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.181
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.763
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.0922
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0.262
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.846
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.109
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0.883
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0.425
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0.543
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.349
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0.635
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0.131
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.588
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.589
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.927
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.21
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0.411
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0.262
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0.711
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0.262
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13794

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0594
MA0003.1	MA0003.1	0.248
MA0004.1	MA0004.1	0.213
MA0006.1	MA0006.1	0.346
MA0007.1	MA0007.1	0.557
MA0009.1	MA0009.1	0.307
MA0014.1	MA0014.1	0.776
MA0017.1	MA0017.1	0.00602
MA0018.2	MA0018.2	0.078
MA0019.1	MA0019.1	0.806
MA0024.1	MA0024.1	0.991
MA0025.1	MA0025.1	0.945
MA0027.1	MA0027.1	0.307
MA0028.1	MA0028.1	0.0228
MA0029.1	MA0029.1	0.0519
MA0030.1	MA0030.1	0.707
MA0031.1	MA0031.1	0.699
MA0035.2	MA0035.2	0.0139
MA0038.1	MA0038.1	0.304
MA0039.2	MA0039.2	0.13
MA0040.1	MA0040.1	0.408
MA0041.1	MA0041.1	0.486
MA0042.1	MA0042.1	0.931
MA0043.1	MA0043.1	0.667
MA0046.1	MA0046.1	0.00149
MA0047.2	MA0047.2	0.138
MA0048.1	MA0048.1	0.0722
MA0050.1	MA0050.1	0.0168
MA0051.1	MA0051.1	0.111
MA0052.1	MA0052.1	0.418
MA0055.1	MA0055.1	5.81289e-4
MA0057.1	MA0057.1	0.949
MA0058.1	MA0058.1	0.19
MA0059.1	MA0059.1	0.0633
MA0060.1	MA0060.1	0.746
MA0061.1	MA0061.1	0.00345
MA0062.2	MA0062.2	1.20415e-4
MA0065.2	MA0065.2	0.00222
MA0066.1	MA0066.1	0.0323
MA0067.1	MA0067.1	0.669
MA0068.1	MA0068.1	0.933
MA0069.1	MA0069.1	0.709
MA0070.1	MA0070.1	0.702
MA0071.1	MA0071.1	0.0184
MA0072.1	MA0072.1	0.518
MA0073.1	MA0073.1	0.552
MA0074.1	MA0074.1	0.245
MA0076.1	MA0076.1	0.0298
MA0077.1	MA0077.1	0.0152
MA0078.1	MA0078.1	0.512
MA0079.2	MA0079.2	0.714
MA0080.2	MA0080.2	9.55176e-9
MA0081.1	MA0081.1	0.0389
MA0083.1	MA0083.1	0.029
MA0084.1	MA0084.1	0.141
MA0087.1	MA0087.1	0.173
MA0088.1	MA0088.1	0.235
MA0090.1	MA0090.1	0.275
MA0091.1	MA0091.1	0.427
MA0092.1	MA0092.1	0.285
MA0093.1	MA0093.1	0.234
MA0099.2	MA0099.2	1.20694e-21
MA0100.1	MA0100.1	0.646
MA0101.1	MA0101.1	9.11515e-4
MA0102.2	MA0102.2	0.163
MA0103.1	MA0103.1	0.0839
MA0104.2	MA0104.2	0.414
MA0105.1	MA0105.1	0.0016
MA0106.1	MA0106.1	0.041
MA0107.1	MA0107.1	0.0018
MA0108.2	MA0108.2	0.803
MA0111.1	MA0111.1	0.977
MA0112.2	MA0112.2	0.00129
MA0113.1	MA0113.1	0.51
MA0114.1	MA0114.1	0.0079
MA0115.1	MA0115.1	0.686
MA0116.1	MA0116.1	0.00431
MA0117.1	MA0117.1	0.722
MA0119.1	MA0119.1	0.264
MA0122.1	MA0122.1	0.668
MA0124.1	MA0124.1	0.823
MA0125.1	MA0125.1	0.355
MA0131.1	MA0131.1	0.823
MA0135.1	MA0135.1	0.0802
MA0136.1	MA0136.1	2.1185e-12
MA0137.2	MA0137.2	0.16
MA0138.2	MA0138.2	0.0696
MA0139.1	MA0139.1	0.47
MA0140.1	MA0140.1	0.0272
MA0141.1	MA0141.1	0.0179
MA0142.1	MA0142.1	0.588
MA0143.1	MA0143.1	0.0191
MA0144.1	MA0144.1	0.837
MA0145.1	MA0145.1	0.405
MA0146.1	MA0146.1	0.00569
MA0147.1	MA0147.1	0.25
MA0148.1	MA0148.1	0.215
MA0149.1	MA0149.1	0.0224
MA0150.1	MA0150.1	1.33569e-4
MA0152.1	MA0152.1	0.732
MA0153.1	MA0153.1	0.246
MA0154.1	MA0154.1	0.0568
MA0155.1	MA0155.1	0.486
MA0156.1	MA0156.1	1.69985e-10
MA0157.1	MA0157.1	0.697
MA0159.1	MA0159.1	0.0269
MA0160.1	MA0160.1	0.055
MA0162.1	MA0162.1	0.144
MA0163.1	MA0163.1	2.06449e-6
MA0164.1	MA0164.1	0.965
MA0258.1	MA0258.1	0.0238
MA0259.1	MA0259.1	0.643

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13794

Novel motif	Logo	P-value
1	1	0.0784
10	10	0.0595
100	100	0.406
101	101	0.432
102	102	0.977
103	103	0.0408
104	104	0.0857
105	105	0.149
106	106	0.0451
107	107	0.147
108	108	0.92
109	109	6.66711e-4
11	11	0.009
110	110	0.0367
111	111	0.248
112	112	0.462
113	113	0.233
114	114	0.234
115	115	0.812
116	116	0.125
117	117	0.00457
118	118	0.14
119	119	0.46
12	12	0.456
120	120	0.155
121	121	0.345
122	122	0.745
123	123	0.453
124	124	0.0474
125	125	0.68
126	126	0.0452
127	127	0.509
128	128	0.256
129	129	0.354
13	13	0.00219
130	130	0.0418
131	131	0.0106
132	132	0.491
133	133	5.98201e-4
134	134	0.643
135	135	0.139
136	136	6.98977e-4
137	137	0.434
138	138	0.899
139	139	0.342
14	14	0.907
140	140	0.82
141	141	0.7
142	142	0.81
143	143	0.0534
144	144	0.71
145	145	0.392
146	146	0.496
147	147	0.643
148	148	0.907
149	149	0.126
15	15	0.122
150	150	0.0947
151	151	0.915
152	152	0.0644
153	153	0.666
154	154	0.293
155	155	0.818
156	156	0.204
157	157	0.339
158	158	0.0888
159	159	0.0116
16	16	0.0309
160	160	0.276
161	161	0.285
162	162	0.489
163	163	0.916
164	164	0.00449
165	165	0.252
166	166	0.682
167	167	0.776
168	168	0.549
169	169	0.021
17	17	0.0634
18	18	0.05
19	19	0.358
2	2	0.788
20	20	0.104
21	21	0.0214
22	22	0.171
23	23	0.695
24	24	0.00729
25	25	0.578
26	26	3.42914e-4
27	27	0.821
28	28	0.821
29	29	0.00599
3	3	0.0399
30	30	0.908
31	31	0.997
32	32	0.00847
33	33	0.0669
34	34	0.65
35	35	0.548
36	36	0.411
37	37	0.0299
38	38	0.434
39	39	0.336
4	4	0.995
40	40	0.108
41	41	0.381
42	42	0.2
43	43	0.141
44	44	0.126
45	45	0.721
46	46	0.0493
47	47	0.0792
48	48	0.0325
49	49	0.421
5	5	0.738
50	50	0.269
51	51	0.39
52	52	0.74
53	53	0.665
54	54	0.477
55	55	0.896
56	56	0.459
57	57	0.56
58	58	0.562
59	59	0.0538
6	6	0.943
60	60	0.137
61	61	0.0701
62	62	0.361
63	63	0.216
64	64	0.207
65	65	0.33
66	66	0.122
67	67	0.253
68	68	0.414
69	69	0.91
7	7	0.13
70	70	0.0353
71	71	0.00768
72	72	0.389
73	73	0.0238
74	74	0.929
75	75	0.0163
76	76	0.167
77	77	0.12
78	78	0.003
79	79	0.477
8	8	0.0679
80	80	0.657
81	81	0.56
82	82	0.62
83	83	0.0223
84	84	0.551
85	85	0.568
86	86	0.127
87	87	9.24487e-5
88	88	0.545
89	89	0.219
9	9	0.326
90	90	0.142
91	91	0.817
92	92	0.979
93	93	0.96
94	94	0.201
95	95	0.0063
96	96	0.994
97	97	0.7
98	98	0.329
99	99	0.638

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13794

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0010154 human thalamus - adult donor sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0001897 (dorsal plus ventral thalamus)
0001894 (diencephalon)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0002784 (regional part of diencephalon)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0001890 (forebrain)
0010225 (thalamic complex)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010154 (human thalamus - adult donor sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000922,UBERON:0000955,UBERON:0001897,UBERON:0001894,UBERON:0000483,UBERON:0000033,UBERON:0000479,UBERON:0002346,UBERON:0000073,UBERON:0004121,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000025,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0005423,UBERON:0000477,UBERON:0000481,UBERON:0000467,UBERON:0002616,UBERON:0001062,UBERON:0000119,UBERON:0005291,UBERON:0002780,UBERON:0006598,UBERON:0002532,UBERON:0001017,UBERON:0001016,UBERON:0000153,UBERON:0007811,UBERON:0000924,UBERON:0001890,UBERON:0005743,UBERON:0003075,UBERON:0003056,UBERON:0001049,UBERON:0006238,UBERON:0006601,UBERON:0005068,UBERON:0006241,UBERON:0003080,UBERON:0006240,UBERON:0006222,UBERON:0007284,UBERON:0007135
+|DRA_sample_Accession=CAGE@SAMD00004703
+|accession_numbers=CAGE;DRX008741;DRR009613;DRZ001038;DRZ002423;DRZ012388;DRZ013773
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0001897,UBERON:0001894,UBERON:0000479,UBERON:0004121,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002616,UBERON:0002780,UBERON:0002784,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0001890,UBERON:0010225
 |ancestors_in_cell_lineage_facet=
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010154
 |comment=
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr21:34442439..34442455,+!p1@OLIG1!2.81!646.75!OLIG1;;chr7:100065686..100065701,-!p2@TSC22D4!2.75!556.37!TSC22D4;;chr11:61520075..61520136,+!p1@C11orf9!2.20!322.55!C11orf9;;chr22:38380543..38380569,-!p1@SOX10!2.13!133.50!SOX10;;chr10:48355030..48355090,+!p1@ZNF488!2.11!160.86!ZNF488;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.09!122.72!PEG3;;chr21:34398234..34398250,+!p1@OLIG2!2.06!112.77!OLIG2;;chr21:34442540..34442560,+!p2@OLIG1!2.05!110.28!OLIG1;;chr8:53322304..53322340,-!p1@ST18!2.04!109.45!ST18;;chr12:106976774..106976788,+!p1@RFX4!1.93!84.58!RFX4;;chr3:181429704..181429722,+!p1@SOX2!1.91!80.43!SOX2;;chr2:145277882..145277967,-!p3@ZEB2!1.90!132.67!ZEB2;;chr9:114287433..114287513,+!p1@ZNF483!1.83!165.00!ZNF483;;chr12:106976678..106976708,+!p2@RFX4!1.82!64.68!RFX4;;chr1:214161272..214161322,+!p1@PROX1!1.80!85.40!PROX1;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.78!58.87!POU3F3;;chr8:53322347..53322378,-!p2@ST18!1.77!57.21!ST18;;chr10:134599649..134599653,-!p1@NKX6-2!1.75!55.55!NKX6-2;;chr8:40755333..40755352,-!p1@ZMAT4!1.73!53.07!ZMAT4;;chr16:1031762..1031781,+!p1@SOX8!1.67!45.60!SOX8;;chr10:114886551..114886601,+!p11@TCF7L2!1.67!45.60!TCF7L2;;chr17:53342311..53342400,+!p1@HLF!1.66!50.58!HLF;;chr9:77112244..77112262,+!p1@RORB!1.66!49.75!RORB;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!1.64!43.12!SMARCE1;;chr10:114889045..114889074,+!p12@TCF7L2!1.63!41.46!TCF7L2;;chr3:181429741..181429767,+!p2@SOX2!1.62!40.63!SOX2;;chr12:26277817..26277863,-!p2@BHLHE41!1.60!52.24!BHLHE41;;chr10:114889016..114889037,+!p15@TCF7L2!1.60!38.97!TCF7L2;;chr12:26277956..26277980,-!p1@BHLHE41!1.58!127.69!BHLHE41;;chr11:113930425..113930471,+!p1@ZBTB16!1.58!52.24!ZBTB16;;chr3:147127142..147127168,+!p1@ZIC1!1.55!34.83!ZIC1;;chr4:81118647..81118666,+!p1@PRDM8!1.52!42.29!PRDM8;;chr14:33403881..33403924,+!p1@NPAS3!1.47!28.19!NPAS3;;chr19:46801639..46801699,+!p1@HIF3A!1.45!27.36!HIF3A;;chr19:30863271..30863338,+!p1@ZNF536!1.45!27.36!ZNF536;;chr12:103351444..103351461,+!p1@ASCL1!1.44!26.53!ASCL1;;chr4:26344778..26344807,+!p8@RBPJ!1.43!25.70!RBPJ;;chr14:33408072..33408114,+!p2@NPAS3!1.42!29.85!NPAS3;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.40!24.05!POU3F3;;chr7:63505799..63505904,+!p1@ZNF727!1.40!24.05!ZNF727;;chr15:80696703..80696754,+!p1@ARNT2!1.39!31.51!ARNT2;;chr2:95963052..95963106,+!p1@KCNIP3!1.37!22.39!KCNIP3;;chr3:126076242..126076257,-!p1@KLF15!1.36!27.36!KLF15;;chr10:119302232..119302265,+!p1@EMX2!1.35!21.56!EMX2;;chr11:31832658..31832681,-!p1@PAX6!1.35!21.56!PAX6;;chr10:64134120..64134183,+!p1@ZNF365!1.34!24.88!ZNF365;;chr10:114886405..114886424,+!p26@TCF7L2!1.32!19.90!TCF7L2;;chr21:34442584..34442587,+!p3@OLIG1!1.32!19.90!OLIG1;;chr7:28725740..28725778,+!p1@CREB5!1.31!168.32!CREB5;;chr19:21512202..21512225,-!p1@ZNF708!1.31!97.84!ZNF708;;chr10:114886432..114886455,+!p20@TCF7L2!1.30!19.07!TCF7L2;;chr20:42574529..42574563,+!p3@TOX2!1.28!18.24!TOX2;;chr19:46800289..46800327,+!p2@HIF3A!1.27!17.41!HIF3A;;chr19:13135386..13135435,+!p4@NFIX!1.27!17.41!NFIX;;chr12:106976656..106976672,+!p4@RFX4!1.25!16.58!RFX4;;chr3:147127177..147127194,+!p2@ZIC1!1.25!16.58!ZIC1;;chr4:26344754..26344772,+!p10@RBPJ!1.25!16.58!RBPJ;;chr6:19837592..19837621,+!p1@ID4!1.23!96.18!ID4;;chr11:8102846..8102892,+!p1@TUB!1.23!22.39!TUB;;chr10:111987079..111987115,+!p3@MXI1!1.22!21.56!MXI1;;chr11:47400078..47400106,-!p1@SPI1!1.22!15.75!SPI1;;chr12:54779511..54779577,-!p5@ZNF385A!1.22!15.75!ZNF385A;;chr19:13135582..13135600,+!p3@NFIX!1.22!15.75!NFIX;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.22!15.75!ZBED1;;chr2:95963120..95963136,+!p2@KCNIP3!1.20!14.93!KCNIP3;;chr15:60884706..60884743,-!p1@RORA!1.18!72.97!RORA;;chr1:61548069..61548102,+!p3@NFIA!1.15!31.51!NFIA;;chr14:33403648..33403710,+!p3@NPAS3!1.15!13.27!NPAS3;;chr15:61521495..61521506,-!p5@RORA!1.15!13.27!RORA;;chr16:51185318..51185348,-!p2@SALL1!1.15!13.27!SALL1;;chr12:54785074..54785122,-!p2@ZNF385A!1.14!19.90!ZNF385A;;chr14:57277178..57277203,-!p1@OTX2!1.13!12.44!OTX2;;chr20:21494684..21494708,-!p1@NKX2-2!1.13!12.44!NKX2-2;;chr2:214016314..214016343,-!p2@IKZF2!1.12!20.73!IKZF2;;chr12:26277929..26277955,-!p3@BHLHE41!1.12!17.41!BHLHE41;;chr11:125034640..125034655,+!p1@PKNOX2!1.10!11.61!PKNOX2;;chr19:57352109..57352153,-!p2@ZIM2!1.10!11.61!ZIM2;;chr16:85932760..85932775,+!p1@IRF8!1.10!11.61!IRF8;;chr3:187463179..187463201,-!p2@BCL6!1.08!45.60!BCL6;;chr16:67198633..67198671,+!p1@HSF4!1.07!10.78!HSF4;;chr12:103352277..103352324,+!p2@ASCL1!1.07!10.78!ASCL1;;chr7:28448965..28448994,+!p2@CREB5!1.05!36.48!CREB5;;chr14:73360799..73360817,-!p1@DPF3!1.05!35.65!DPF3;;chr2:166326200..166326216,+!p1@CSRNP3!1.05!14.93!CSRNP3;;chr22:41763452..41763466,+!p2@TEF!1.04!9.95!TEF;;chr3:147111198..147111225,+!p4@ZIC1!1.04!9.95!ZIC1;;chr10:64133862..64133884,+!p4@ZNF365!1.04!9.95!ZNF365;;chrX:25034067..25034088,-!p1@ARX!1.04!9.95!ARX;;chr7:50344289..50344323,+!p1@IKZF1!1.04!9.95!IKZF1;;chr8:55370487..55370503,+!p1@SOX17!1.04!9.95!SOX17;;chr20:21494602..21494622,-!p3@NKX2-2!1.04!9.95!NKX2-2;;chr20:21494654..21494678,-!p2@NKX2-2!1.04!9.95!NKX2-2;;chr17:70117153..70117174,+!p1@SOX9!1.03!101.16!SOX9;;chr19:53636125..53636178,-!p1@ZNF415!1.02!27.36!ZNF415;;chr15:61521417..61521460,-!p2@RORA!1.02!21.56!RORA;;chr19:21512115..21512135,-!p3@ZNF708!1.01!19.07!ZNF708;;chr13:45151509..45151539,-!p6@TSC22D1!1.01!15.75!TSC22D1;;chr15:80696836..80696853,+!p7@ARNT2!1.01!9.12!ARNT2;;chr2:145275982..145276003,-!p7@ZEB2!1.01!9.12!ZEB2;;chr2:45168875..45168916,+!p1@SIX3!1.01!9.12!SIX3;;chr7:115670804..115670825,-!p1@TFEC!1.01!9.12!TFEC;;chr9:14314131..14314147,-!p2@NFIB!1.00!51.41!NFIB;;chr7:86781858..86781879,+!p3@DMTF1!1.00!14.93!DMTF1;;chr20:62680984..62680999,-!p1@SOX18!0.99!11.61!SOX18;;chr17:7492684..7492778,-!p2@SOX15!0.98!18.24!SOX15;;chr2:145277640..145277771,-!p1@ZEB2!0.97!113.60!ZEB2;;chr9:73029219..73029289,-!p2@KLF9!0.97!25.70!KLF9;;chr2:178128250..178128293,-!p6@NFE2L2!0.97!21.56!NFE2L2;;chr19:9879350..9879419,-!p2@ZNF846!0.97!18.24!ZNF846;;chr15:57511609..57511651,+!p2@TCF12!0.97!14.10!TCF12;;chr18:45935720..45935772,-!p1@ZBTB7C!0.97!8.29!ZBTB7C;;chr10:114886533..114886542,+!p48@TCF7L2!0.97!8.29!TCF7L2;;chr10:48359344..48359376,+!p2@ZNF488!0.97!8.29!ZNF488;;chr10:64134045..64134083,+!p3@ZNF365!0.97!8.29!ZNF365;;chr11:31832862..31832884,-!p2@PAX6!0.97!8.29!PAX6;;chr14:58797974..58798011,+!p3@ARID4A!0.97!8.29!ARID4A;;chrX:101186981..101187030,-!p1@ZMAT1!0.96!27.36!ZMAT1;;chr18:53068911..53068935,-!p4@TCF4!0.96!9.12!TCF4;;chrX:70315688..70315709,+!p1@FOXO4!0.95!19.07!FOXO4;;chr11:113930291..113930339,+!p2@ZBTB16!0.95!13.27!ZBTB16;;chr6:126070769..126070801,+!p1@HEY2!0.95!9.12!HEY2;;chr19:21512144..21512191,-!p2@ZNF708!0.94!37.31!ZNF708;;chr3:114343768..114343822,-!p1@ZBTB20!0.93!34.00!ZBTB20;;chr5:92919100..92919135,+!p3@NR2F1!0.93!9.12!NR2F1;;chr8:53322384..53322393,-!p7@ST18!0.93!7.46!ST18;;chr9:1050331..1050363,+!p1@DMRT2!0.93!7.46!DMRT2;;chr2:180726040..180726052,-!p2@ZNF385B!0.93!7.46!ZNF385B;;chr3:21792682..21792720,-!p1@ZNF385D!0.93!7.46!ZNF385D;;chr15:61521462..61521482,-!p4@RORA!0.93!7.46!RORA;;chr15:80696824..80696835,+!p9@ARNT2!0.93!7.46!ARNT2;;chr1:197886461..197886558,+!p1@LHX9!0.93!7.46!LHX9;;chr13:45010939..45011033,-!p1@TSC22D1!0.92!499.16!TSC22D1;;chr5:92918894..92918912,+!p2@NR2F1!0.92!24.88!NR2F1;;chr3:52001396..52001425,-!p4@PCBP4!0.92!13.27!PCBP4;;chr17:17726907..17726958,-!p2@SREBF1!0.91!45.60!SREBF1;;chr5:124084493..124084524,-!p2@ZNF608!0.91!16.58!ZNF608;;chr7:64023410..64023428,-!p2@ZNF680!0.91!11.61!ZNF680;;chr18:6414884..6414942,-!p1@L3MBTL4!0.91!9.12!L3MBTL4;;chr5:124082322..124082364,-!p1@ZNF608!0.90!18.24!ZNF608;;chr3:126076264..126076305,-!p2@KLF15!0.90!9.95!KLF15;;chr7:28725715..28725727,+!p3@CREB5!0.90!8.29!CREB5;;chr8:106330656..106330684,+!p1@ZFPM2!0.89!18.24!ZFPM2;;chr8:80679993..80680011,-!p1@HEY1!0.89!9.95!HEY1;;chr1:61548225..61548299,+!p1@NFIA!0.88!91.21!NFIA;;chr10:38265517..38265591,-!p1@ZNF25!0.88!26.53!ZNF25;;chr19:37096139..37096170,-!p2@ZNF529!0.88!19.07!ZNF529;;chr3:114819124..114819200,-!p3@ZBTB20!0.88!15.75!ZBTB20;;chr1:170633348..170633399,+!p2@PRRX1!0.88!9.12!PRRX1;;chr1:214161358..214161377,+!p3@PROX1!0.88!6.63!PROX1;;chr1:40105299..40105326,-!p1@HEYL!0.88!6.63!HEYL;;chr2:45168834..45168847,+!p2@SIX3!0.88!6.63!SIX3;;chr2:5832508..5832524,+!p1@SOX11!0.88!6.63!SOX11;;chr2:68592406..68592424,+!p1@PLEK!0.88!6.63!PLEK;;chr10:119303078..119303169,+!p2@EMX2!0.88!6.63!EMX2;;chr11:113930401..113930422,+!p3@ZBTB16!0.88!6.63!ZBTB16;;chr14:29235961..29236008,+!p1@FOXG1!0.88!6.63!FOXG1;;chrX:118739782..118739829,-!p2@NKRF!0.88!6.63!NKRF;;chr18:76739816..76739822,+!p1@SALL3!0.88!6.63!SALL3;;chr8:145560371..145560449,-!p1@SCRT1!0.88!6.63!SCRT1;;chr17:47439437..47439533,-!p1@ZNF652!0.87!55.55!ZNF652;;chr20:3388541..3388575,-!p2@C20orf194!0.87!26.53!C20orf194;;chr15:57210961..57211012,+!p3@TCF12!0.87!21.56!TCF12;;chr6:126112074..126112144,+!p1@NCOA7!0.86!89.55!NCOA7;;chr17:38219209..38219230,+!p1@THRA!0.86!86.23!THRA;;chr9:4300050..4300118,-!p1@GLIS3!0.86!43.12!GLIS3;;chr10:63809013..63809041,+!p3@ARID5B!0.86!36.48!ARID5B;;chr18:22932080..22932170,-!p1@ZNF521!0.86!28.19!ZNF521;;chr14:21994337..21994442,-!p1@SALL2!0.86!18.24!SALL2;;chr5:178368186..178368238,+!p1@ZNF454!0.86!11.61!ZNF454;;chr5:139494712..139494759,+!p5@PURA!0.86!10.78!PURA;;chr20:50179368..50179392,-!p2@NFATC2!0.86!8.29!NFATC2;;chr8:77593474..77593612,+!p1@ZFHX4!0.85!27.36!ZFHX4;;chr19:33793430..33793447,-!p1@CEBPA!0.85!27.36!CEBPA;;chr10:35484053..35484076,+!p1@CREM!0.85!15.75!CREM;;chr1:61548374..61548415,+!p4@NFIA!0.85!11.61!NFIA;;chr13:37494365..37494381,-!p1@SMAD9!0.84!10.78!SMAD9;;chr8:123793988..123794016,+!p1@ZHX2!0.84!10.78!ZHX2;;chr18:53254566..53254567,-!p8@TCF4!0.84!9.95!TCF4;;chr19:38085768..38085821,+!p1@ZNF540!0.84!9.12!ZNF540;;chr19:37998036..37998098,+!p2@ZNF793!0.84!7.46!ZNF793;;chr10:114709999..114710031,+!p1@TCF7L2!0.83!147.59!TCF7L2;;chr14:74318611..74318682,+!p1@PTGR2,p2@ZNF410!0.83!42.29!ZNF410;;chr1:151032142..151032195,+!p5@MLLT11!0.83!11.61!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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000955;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001890;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001894;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0010225
+|ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0010316
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 36: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/thalamus%2520-%2520adult%252c%2520donor10196.CNhs13794.10168-103B6.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/thalamus%2520-%2520adult%252c%2520donor10196.CNhs13794.10168-103B6.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/thalamus%2520-%2520adult%252c%2520donor10196.CNhs13794.10168-103B6.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/thalamus%2520-%2520adult%252c%2520donor10196.CNhs13794.10168-103B6.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/thalamus%2520-%2520adult%252c%2520donor10196.CNhs13794.10168-103B6.hg38.nobarcode.ctss.bed.gz
 |id=FF:10168-103B6
 |is_a=EFO:0002091;;FF:0010154
 |is_obsolete=
+|library_id=CNhs13794
+|library_id_phase_based=2:CNhs13794
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10168
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10168
 |name=thalamus - adult, donor10196
 |namespace=FANTOM5
@@ Line 46: / Line 63: @@
 |profile_rnaseq=
 |profile_srnaseq=
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 |rna_box=103
 |rna_catalog_number=
@@ Line 59: / Line 79: @@
 |rna_weight_ug=50.62875
 |sample_age=60
+|sample_category=tissues
 |sample_cell_catalog=NA
 |sample_cell_line=
@@ Line 80: / Line 101: @@
 |top_motifs=SOX2:3.62590108079;SOX5:3.4978851229;NFIX:2.9743574287;REST:2.95051543414;GATA4:2.87000238447;NHLH1,2:2.77982191925;ATF2:2.73290360845;CUX2:2.66912391609;NKX3-2:2.61669252947;MYFfamily:2.61622000499;DBP:2.58715361436;FOXP3:2.53571623413;HBP1_HMGB_SSRP1_UBTF:2.52026269366;MTF1:2.49768084042;ZFP161:2.492362242;SOX17:2.46140285724;RREB1:2.42018751987;SOX{8,9,10}:2.32290717896;MED-1{core}:2.28729809636;MTE{core}:2.25206219923;OCT4_SOX2{dimer}:2.2062306044;NR3C1:2.20201626517;PRRX1,2:2.18793711057;JUN:2.15518370065;XBP1:2.12991312099;HIC1:2.05500281273;PRDM1:2.05310769558;LMO2:2.0183448015;NKX6-1,2:2.01763624114;RFX1:1.97402434803;ZBTB6:1.93065232656;TGIF1:1.89109090202;SMAD1..7,9:1.78073987893;NANOG:1.77991925372;FOXP1:1.77606867481;PDX1:1.75072798622;HOXA9_MEIS1:1.74406285457;GFI1B:1.71696948977;BPTF:1.69893489261;ZNF384:1.67443057145;GTF2I:1.66171280285;RFX2..5_RFXANK_RFXAP:1.64320432135;LEF1_TCF7_TCF7L1,2:1.62638452005;PAX6:1.62062995569;FOXM1:1.58734274438;POU6F1:1.46312731947;EGR1..3:1.43046949682;ARID5B:1.41293681372;TFAP2B:1.38366224533;ONECUT1,2:1.32927715547;ZBTB16:1.32394093911;KLF4:1.28772737829;RBPJ:1.2757383236;MZF1:1.27325056804;STAT1,3:1.25188733131;PATZ1:1.24417952259;STAT2,4,6:1.19549536173;RORA:1.19023679764;MAZ:1.18878235963;FOXD3:1.18710686871;AHR_ARNT_ARNT2:1.15875286121;T:1.15512386281;BREu{core}:1.15009609584;ESRRA:1.12948340122;MAFB:1.10787577973;GCM1,2:1.10559244657;HOX{A4,D4}:1.08986710453;AR:1.0679043972;FOX{F1,F2,J1}:0.985282615855;TFAP2{A,C}:0.956489061938;LHX3,4:0.951007380159;EP300:0.947262998909;NRF1:0.936638598952;PAX5:0.934186191449;IKZF2:0.927289558342;FOXL1:0.903015065433;MYBL2:0.894427644953;TLX2:0.875642354892;SP1:0.85308168348;TLX1..3_NFIC{dimer}:0.850223543355;FOX{D1,D2}:0.838570638964;ADNP_IRX_SIX_ZHX:0.809603085121;ZNF423:0.799992663123;CRX:0.791919628932;ALX1:0.779534740727;EBF1:0.76091051917;POU5F1:0.647630967511;FOXQ1:0.645186658805;CDC5L:0.642389790087;PAX4:0.626899021448;HOX{A6,A7,B6,B7}:0.624905363148;SREBF1,2:0.613538624715;ZNF143:0.607189492522;GZF1:0.586329894917;PAX2:0.575391379059;SPZ1:0.537085581016;CREB1:0.524007970561;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.511132406851;NKX2-3_NKX2-5:0.474071358429;PBX1:0.463136841625;GFI1:0.461498962851;HMX1:0.432716821572;POU3F1..4:0.430691359613;PITX1..3:0.424117518897;TFDP1:0.420090756766;IRF7:0.401782307197;TOPORS:0.381320086915;DMAP1_NCOR{1,2}_SMARC:0.377923596067;MEF2{A,B,C,D}:0.371537421764;ZEB1:0.351783440517;NKX3-1:0.310420435633;HMGA1,2:0.285937051502;HAND1,2:0.266829171384;NFIL3:0.225702008935;NKX2-1,4:0.199225143942;ATF5_CREB3:0.183351153057;ZNF238:0.116174913362;FOXO1,3,4:0.114816514106;NFE2L1:0.106359781155;ZIC1..3:0.0172196664448;POU1F1:-0.0257939947398;GTF2A1,2:-0.0303389693631;CEBPA,B_DDIT3:-0.0808676942558;PAX8:-0.102533879822;ATF4:-0.108330270346;NFY{A,B,C}:-0.11287819525;IRF1,2:-0.11571016363;FOXA2:-0.117105150954;YY1:-0.191686083531;EVI1:-0.217049130434;UFEwm:-0.235337338993;NFE2L2:-0.237202987047;FOXN1:-0.26246215033;bHLH_family:-0.288483699083;NANOG{mouse}:-0.306402310003;VSX1,2:-0.306736102045;HNF4A_NR2F1,2:-0.329872628578;IKZF1:-0.362486771205;NR1H4:-0.38442309524;MYOD1:-0.385958353353;NR5A1,2:-0.448751273478;ATF6:-0.480318259615;TFCP2:-0.49430160142;GATA6:-0.500408029912;AIRE:-0.503297758291;HSF1,2:-0.544070898443;TFAP4:-0.545527070242;NFE2:-0.575379822421;CDX1,2,4:-0.578695372708;TBP:-0.611713788295;TEF:-0.624790031604;SPI1:-0.629934882795;PAX3,7:-0.645070924896;ALX4:-0.650457443425;NFATC1..3:-0.658202404323;SPIB:-0.688999322179;FOX{I1,J2}:-0.708169665191;HNF1A:-0.72028271609;ETS1,2:-0.732220374936;FOSL2:-0.76812470744;SNAI1..3:-0.773032004936;PAX1,9:-0.784081370449;TP53:-0.856419634168;TEAD1:-0.861328192761;HLF:-0.8621174833;TBX4,5:-0.878559332507;FOS_FOS{B,L1}_JUN{B,D}:-0.903320680744;BACH2:-0.909690336673;XCPE1{core}:-0.954789897234;NKX2-2,8:-0.957361120518;TAL1_TCF{3,4,12}:-0.990324962914;POU2F1..3:-0.991811396167;NFKB1_REL_RELA:-1.06306685045;E2F1..5:-1.06858800071;RUNX1..3:-1.12062763434;HES1:-1.12125934907;HIF1A:-1.13884270984;ELK1,4_GABP{A,B1}:-1.2116928837;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.3268617574;ELF1,2,4:-1.33696545081;SRF:-1.41248025603;RXR{A,B,G}:-1.48770934708;MYB:-1.51858643467;ESR1:-1.61176321397;GLI1..3:-1.87563855039;RXRA_VDR{dimer}:-2.13237202703;STAT5{A,B}:-2.15350409373;NR6A1:-2.18265139772;EN1,2:-2.18559987555;ZNF148:-2.28144097071;HOX{A5,B5}:-2.54100827966;PPARG:-2.76133639911
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10168-103B6;search_select_hide=table117:FF:10168-103B6
 }}

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FF:10168-103B6: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 12:24, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0