FF:11889-125D8: Difference between revisions

Latest revision as of 18:27, 4 June 2020

Name:	CD14+ monocytes - treated with B-glucan, donor3
Species:	Human (Homo sapiens)
Library ID:	CNhs13495
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	NA
dev stage	NA
sex	female
age	21
cell type	monocyte
cell line	NA
company	NA
collaboration	Christine Wells (University of Queensland)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	D5-10
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005156

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13495		CAGE		DRX008137		DRR009009

Accession ID Hg19

Library id		BAM		CTSS
CNhs13495		DRZ000434		DRZ001819

Accession ID Hg38

Library id		BAM		CTSS
CNhs13495		DRZ011784		DRZ013169

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0.578
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.087
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0.501
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.471
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.117
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0.117
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0.209
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0.701
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.209
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0.612
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0.501
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.426
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.451
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.0377
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.701
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0.215
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0.406
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.12
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0.285
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.00222
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0.456
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.868
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0.501
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.715
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.701
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.59
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.913
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.463
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.285
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.471
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.603
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0.91
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.45
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.726
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.825
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0.285
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.761
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.285
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0.285
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.541
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0.209
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.35
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0.285
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0.857
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0.285
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0.209
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0.209
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0.285
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0.209
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13495

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	7.01168e-8
MA0003.1	MA0003.1	0.512
MA0004.1	MA0004.1	0.0773
MA0006.1	MA0006.1	0.745
MA0007.1	MA0007.1	0.964
MA0009.1	MA0009.1	0.354
MA0014.1	MA0014.1	0.634
MA0017.1	MA0017.1	0.119
MA0018.2	MA0018.2	0.0111
MA0019.1	MA0019.1	0.805
MA0024.1	MA0024.1	0.00307
MA0025.1	MA0025.1	6.19886e-5
MA0027.1	MA0027.1	0.945
MA0028.1	MA0028.1	0.209
MA0029.1	MA0029.1	0.222
MA0030.1	MA0030.1	0.384
MA0031.1	MA0031.1	0.568
MA0035.2	MA0035.2	0.31
MA0038.1	MA0038.1	0.402
MA0039.2	MA0039.2	0.83
MA0040.1	MA0040.1	0.499
MA0041.1	MA0041.1	0.975
MA0042.1	MA0042.1	0.81
MA0043.1	MA0043.1	2.7991e-9
MA0046.1	MA0046.1	0.00914
MA0047.2	MA0047.2	0.569
MA0048.1	MA0048.1	0.599
MA0050.1	MA0050.1	1.03217e-5
MA0051.1	MA0051.1	0.0266
MA0052.1	MA0052.1	7.97478e-4
MA0055.1	MA0055.1	0.568
MA0057.1	MA0057.1	0.477
MA0058.1	MA0058.1	0.00937
MA0059.1	MA0059.1	0.0541
MA0060.1	MA0060.1	8.28291e-7
MA0061.1	MA0061.1	9.88387e-10
MA0062.2	MA0062.2	0.219
MA0065.2	MA0065.2	0.0219
MA0066.1	MA0066.1	0.0519
MA0067.1	MA0067.1	1.99466e-7
MA0068.1	MA0068.1	0.282
MA0069.1	MA0069.1	0.65
MA0070.1	MA0070.1	0.0691
MA0071.1	MA0071.1	0.297
MA0072.1	MA0072.1	0.699
MA0073.1	MA0073.1	0.337
MA0074.1	MA0074.1	0.145
MA0076.1	MA0076.1	0.238
MA0077.1	MA0077.1	0.208
MA0078.1	MA0078.1	0.449
MA0079.2	MA0079.2	0.276
MA0080.2	MA0080.2	3.10476e-13
MA0081.1	MA0081.1	2.34466e-4
MA0083.1	MA0083.1	0.423
MA0084.1	MA0084.1	0.592
MA0087.1	MA0087.1	0.838
MA0088.1	MA0088.1	0.441
MA0090.1	MA0090.1	0.241
MA0091.1	MA0091.1	0.791
MA0092.1	MA0092.1	0.359
MA0093.1	MA0093.1	0.0853
MA0099.2	MA0099.2	2.09295e-45
MA0100.1	MA0100.1	0.643
MA0101.1	MA0101.1	1.67807e-10
MA0102.2	MA0102.2	1.2896e-7
MA0103.1	MA0103.1	0.195
MA0104.2	MA0104.2	0.154
MA0105.1	MA0105.1	2.81917e-13
MA0106.1	MA0106.1	0.736
MA0107.1	MA0107.1	2.58424e-12
MA0108.2	MA0108.2	0.846
MA0111.1	MA0111.1	0.574
MA0112.2	MA0112.2	1.50921e-4
MA0113.1	MA0113.1	0.991
MA0114.1	MA0114.1	0.205
MA0115.1	MA0115.1	0.707
MA0116.1	MA0116.1	6.70031e-4
MA0117.1	MA0117.1	0.0426
MA0119.1	MA0119.1	0.255
MA0122.1	MA0122.1	0.714
MA0124.1	MA0124.1	0.328
MA0125.1	MA0125.1	0.256
MA0131.1	MA0131.1	0.492
MA0135.1	MA0135.1	0.653
MA0136.1	MA0136.1	1.98536e-15
MA0137.2	MA0137.2	0.321
MA0138.2	MA0138.2	0.368
MA0139.1	MA0139.1	0.804
MA0140.1	MA0140.1	0.313
MA0141.1	MA0141.1	0.126
MA0142.1	MA0142.1	0.546
MA0143.1	MA0143.1	0.604
MA0144.1	MA0144.1	0.136
MA0145.1	MA0145.1	0.416
MA0146.1	MA0146.1	0.172
MA0147.1	MA0147.1	0.258
MA0148.1	MA0148.1	0.629
MA0149.1	MA0149.1	0.145
MA0150.1	MA0150.1	1.13956e-22
MA0152.1	MA0152.1	0.891
MA0153.1	MA0153.1	0.00227
MA0154.1	MA0154.1	8.93312e-4
MA0155.1	MA0155.1	0.932
MA0156.1	MA0156.1	3.28809e-9
MA0157.1	MA0157.1	0.997
MA0159.1	MA0159.1	0.0331
MA0160.1	MA0160.1	0.024
MA0162.1	MA0162.1	0.619
MA0163.1	MA0163.1	1.18471e-6
MA0164.1	MA0164.1	0.635
MA0258.1	MA0258.1	0.0116
MA0259.1	MA0259.1	0.99

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13495

Novel motif	Logo	P-value
1	1	0.129
10	10	0.0184
100	100	0.785
101	101	0.976
102	102	0.769
103	103	0.348
104	104	0.487
105	105	0.1
106	106	7.06507e-4
107	107	0.339
108	108	0.888
109	109	0.259
11	11	0.219
110	110	0.228
111	111	0.0544
112	112	0.382
113	113	0.486
114	114	0.029
115	115	0.146
116	116	0.948
117	117	0.0463
118	118	0.208
119	119	0.142
12	12	0.282
120	120	0.973
121	121	0.378
122	122	0.623
123	123	0.242
124	124	0.495
125	125	0.482
126	126	0.182
127	127	0.387
128	128	0.0411
129	129	0.434
13	13	0.0944
130	130	0.167
131	131	0.811
132	132	0.0465
133	133	0.958
134	134	0.71
135	135	0.942
136	136	0.978
137	137	0.00821
138	138	0.286
139	139	0.0434
14	14	0.518
140	140	0.227
141	141	0.271
142	142	0.32
143	143	0.0383
144	144	0.698
145	145	0.495
146	146	0.449
147	147	0.629
148	148	0.0154
149	149	0.967
15	15	0.174
150	150	0.449
151	151	0.428
152	152	0.19
153	153	0.694
154	154	0.642
155	155	0.808
156	156	0.613
157	157	0.313
158	158	0.0105
159	159	0.453
16	16	0.413
160	160	0.492
161	161	0.474
162	162	0.191
163	163	0.17
164	164	0.0888
165	165	0.202
166	166	0.465
167	167	0.218
168	168	0.339
169	169	0.0092
17	17	0.256
18	18	0.141
19	19	0.538
2	2	0.504
20	20	0.205
21	21	0.679
22	22	0.266
23	23	0.0617
24	24	0.354
25	25	0.382
26	26	0.0502
27	27	0.549
28	28	0.419
29	29	0.277
3	3	0.185
30	30	0.485
31	31	0.817
32	32	0.47
33	33	0.298
34	34	0.686
35	35	0.141
36	36	0.102
37	37	0.0625
38	38	0.349
39	39	0.857
4	4	0.983
40	40	0.133
41	41	0.00444
42	42	0.459
43	43	0.027
44	44	0.75
45	45	0.731
46	46	0.225
47	47	0.692
48	48	0.557
49	49	0.114
5	5	0.278
50	50	0.905
51	51	0.509
52	52	0.413
53	53	0.492
54	54	0.438
55	55	0.703
56	56	0.729
57	57	0.877
58	58	0.166
59	59	0.277
6	6	0.722
60	60	0.0639
61	61	0.683
62	62	0.0967
63	63	0.624
64	64	0.472
65	65	0.242
66	66	0.392
67	67	0.499
68	68	0.965
69	69	0.663
7	7	0.268
70	70	0.0586
71	71	0.0231
72	72	0.33
73	73	0.139
74	74	0.19
75	75	0.0869
76	76	0.141
77	77	0.613
78	78	0.116
79	79	0.844
8	8	0.459
80	80	0.218
81	81	0.421
82	82	0.227
83	83	0.00809
84	84	0.218
85	85	0.0182
86	86	0.0441
87	87	0.552
88	88	0.662
89	89	0.285
9	9	0.463
90	90	0.122
91	91	0.374
92	92	0.315
93	93	0.331
94	94	0.0575
95	95	0.402
96	96	0.419
97	97	0.747
98	98	0.15
99	99	0.0308

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13495

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011102 human CD14-positive monocytes - treated with B-glucan sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000325 (stuff accumulating cell)
0000473 (defensive cell)
0000234 (phagocyte)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0000255 (eukaryotic cell)
0000576 (monocyte)
0000860 (classical monocyte)
0002057 (CD14-positive, CD16-negative classical monocyte)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000625 (experimental infection sample)
0000350 (experimentally modified sample)
0000630 (beta-glucan treatment sample)
0011102 (human CD14-positive monocytes - treated with B-glucan sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
CL:0002057 (CD14-positive, CD16-negative classical monocyte)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002371,UBERON:0001474,UBERON:0002384,UBERON:0000926,UBERON:0000479,UBERON:0000062,UBERON:0004765,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0005423,UBERON:0000467,UBERON:0001062,UBERON:0005291,UBERON:0006598,UBERON:0002532,UBERON:0002204,UBERON:0001434,UBERON:0002390,UBERON:0002193,UBERON:0002405,UBERON:0003081,UBERON:0006603,UBERON:0003061
+|DRA_sample_Accession=CAGE@SAMD00005156
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000723,CL:0000048,CL:0000988,CL:0000839,CL:0000548,CL:0002194,CL:0000034,CL:0002032,CL:0000763,CL:0000012,CL:0002320,CL:0000063,CL:0002371,CL:0000766,CL:0000219,CL:0000004,CL:0000134,CL:0000738,CL:0002087,CL:0000255,CL:0002031,CL:0000576,CL:0000037,CL:0000860,CL:0000566,CL:0000049,CL:0000557,CL:0000837,CL:0002057,CL:0002009,CL:0000040,CL:0000559
+|accession_numbers=CAGE;DRX008137;DRR009009;DRZ000434;DRZ001819;DRZ011784;DRZ013169
+|ancestors_in_anatomy_facet=
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000325,CL:0000473,CL:0000234,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0000860,CL:0002057
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000625,FF:0000350,FF:0000630,FF:0011102
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!3.35!2226.17!PLEK;;chr11:47400078..47400106,-!p1@SPI1!2.73!539.20!SPI1;;chr21:34442439..34442455,+!p1@OLIG1!2.56!360.50!OLIG1;;chr10:64576105..64576133,-!p1@EGR2!2.51!640.47!EGR2;;chr7:115670804..115670825,-!p1@TFEC!2.49!307.85!TFEC;;chr16:85932760..85932775,+!p1@IRF8!2.41!254.58!IRF8;;chr12:54778471..54778528,-!p1@ZNF385A!2.32!205.65!ZNF385A;;chr11:47399947..47399961,-!p3@SPI1!2.12!131.93!SPI1;;chr20:39317868..39317884,-!p1@MAFB!2.06!1271.34!MAFB;;chr6:106534192..106534224,+!p1@PRDM1!2.06!309.71!PRDM1;;chr21:34398234..34398250,+!p1@OLIG2!2.06!112.73!OLIG2;;chr11:47400062..47400077,-!p2@SPI1!2.06!112.73!SPI1;;chr3:12330560..12330579,+!p1@PPARG!1.97!104.68!PPARG;;chr19:45971246..45971265,+!p1@FOSB!1.95!1536.14!FOSB;;chr10:64018918..64018936,+!p2@ZNF365!1.94!85.48!ZNF365;;chr2:157189180..157189290,-!p1@NR4A2!1.93!419.96!NR4A2;;chr11:47399996..47400014,-!p4@SPI1!1.90!78.67!SPI1;;chr9:102584159..102584174,+!p2@NR4A3!1.84!120.79!NR4A3;;chr10:31288398..31288455,-!p2@ZNF438!1.84!78.67!ZNF438;;chr12:52445218..52445237,+!p1@NR4A1!1.83!786.03!NR4A1;;chr10:35484053..35484076,+!p1@CREM!1.83!161.05!CREM;;chr3:12329397..12329433,+!p2@PPARG!1.82!143.70!PPARG;;chr8:22550982..22550999,-!p1@EGR3!1.81!174.05!EGR3;;chr6:106534230..106534254,+!p2@PRDM1!1.79!147.11!PRDM1;;chr11:47400032..47400043,-!p5@SPI1!1.79!61.01!SPI1;;chr2:145277640..145277771,-!p1@ZEB2!1.75!695.29!ZEB2;;chr2:70142232..70142251,+!p1@MXD1!1.74!288.03!MXD1;;chr14:35872453..35872485,-!p2@NFKBIA!1.74!127.60!NFKBIA;;chr12:72056800..72056834,+!p1@THAP2!1.74!72.16!THAP2;;chr16:31885093..31885165,+!p1@ZNF267!1.73!762.19!ZNF267;;chr1:25256756..25256774,-!p1@RUNX3!1.72!94.77!RUNX3;;chr1:212782094..212782109,+!p1@ATF3!1.71!1287.45!ATF3;;chr19:36391434..36391450,-!p1@NFKBID!1.71!96.32!NFKBID;;chr10:31288370..31288393,-!p3@ZNF438!1.71!49.86!ZNF438;;chr2:68592394..68592405,+!p2@PLEK!1.66!44.60!PLEK;;chr10:51572408..51572454,+!p3@NCOA4!1.65!245.60!NCOA4;;chr19:50432132..50432217,+!p2@ATF5!1.65!51.41!ATF5;;chr2:61108695..61108753,+!p1@REL!1.63!274.09!REL;;chr20:48599506..48599526,+!p1@SNAI1!1.63!257.37!SNAI1;;chr2:145275162..145275202,-!p2@ZEB2!1.61!222.37!ZEB2;;chr14:35873947..35873965,-!p1@NFKBIA!1.57!2168.87!NFKBIA;;chr22:38597987..38598021,+!p2@MAFF!1.57!213.39!MAFF;;chr21:30671690..30671762,+!p2@BACH1!1.57!117.69!BACH1;;chr11:47400045..47400060,-!p6@SPI1!1.56!35.31!SPI1;;chr4:103422499..103422632,+!p1@NFKB1!1.55!688.48!NFKB1;;chr9:102584262..102584276,+!p1@NR4A3!1.55!75.57!NR4A3;;chr6:144385698..144385742,-!p2@PLAGL1!1.55!41.50!PLAGL1;;chr10:104155480..104155534,+!p2@NFKB2!1.54!208.74!NFKB2;;chr12:72056773..72056796,+!p3@THAP2!1.54!43.67!THAP2;;chr19:54041669..54041697,+!p2@ZNF331!1.54!33.45!ZNF331;;chr6:15246200..15246214,+!p2@JARID2!1.52!85.48!JARID2;;chr7:50344289..50344323,+!p1@IKZF1!1.51!31.59!IKZF1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.51!31.28!ZBED1;;chr12:72056749..72056767,+!p6@THAP2!1.50!33.76!THAP2;;chrX:153305787..153305807,-!p3@MECP2!1.50!30.97!MECP2;;chr21:30671235..30671253,+!p1@BACH1!1.49!365.76!BACH1;;chr12:54778351..54778378,-!p6@ZNF385A!1.49!30.04!ZNF385A;;chr21:34442540..34442560,+!p2@OLIG1!1.49!29.73!OLIG1;;chr4:106068026..106068084,+!p1@TET2!1.48!249.31!TET2;;chr9:102584128..102584144,+!p3@NR4A3!1.48!55.13!NR4A3;;chr11:47399920..47399931,-!p7@SPI1!1.47!28.49!SPI1;;chr20:48807351..48807384,+!p1@CEBPB!1.46!2692.59!CEBPB;;chr6:44233252..44233296,-!p1@NFKBIE!1.45!255.51!NFKBIE;;chr2:97202480..97202499,+!p1@ARID5A!1.44!258.91!ARID5A;;chr21:36260295..36260310,-!p3@RUNX1!1.44!42.43!RUNX1;;chr10:104154246..104154347,+!p3@NFKB2!1.41!146.49!NFKB2;;chr13:41593425..41593480,-!p1@ELF1!1.40!146.80!ELF1;;chr18:77155922..77155939,+!p1@NFATC1!1.40!64.42!NFATC1;;chr10:51572339..51572376,+!p4@NCOA4!1.40!53.89!NCOA4;;chr10:104155659..104155676,+!p4@NFKB2!1.40!29.73!NFKB2;;chr12:48298765..48298783,-!p2@VDR!1.39!48.00!VDR;;chr17:38497662..38497713,+!p4@RARA!1.39!26.94!RARA;;chr1:37940170..37940190,+!p1@ZC3H12A!1.37!266.66!ZC3H12A;;chr14:35872962..35873025,-!p3@NFKBIA!1.37!55.75!NFKBIA;;chr2:70314240..70314256,+!p4@PCBP1!1.37!46.15!PCBP1;;chr9:110252035..110252057,-!p1@KLF4!1.35!329.22!KLF4;;chr9:129567282..129567353,+!p1@ZBTB43!1.35!269.44!ZBTB43;;chrX:129244454..129244488,-!p1@ELF4!1.34!147.73!ELF4;;chr6:12012170..12012245,+!p1@HIVEP1!1.34!101.58!HIVEP1;;chr19:19496539..19496576,+!p8@GATAD2A!1.34!35.93!GATAD2A;;chr2:145277882..145277967,-!p3@ZEB2!1.34!35.62!ZEB2;;chr2:192015701..192015743,-!p1@STAT4!1.34!28.18!STAT4;;chr19:54058073..54058088,+!p1@ZNF331!1.34!21.06!ZNF331;;chr8:53373491..53373506,-!p4@ST18!1.34!20.75!ST18;;chr18:3449618..3449634,+!p13@TGIF1!1.33!25.09!TGIF1;;chr3:150126101..150126118,+!p6@TSC22D2!1.32!32.52!TSC22D2;;chr8:80679993..80680011,-!p1@HEY1!1.31!28.18!HEY1;;chr2:61108808..61108821,+!p3@REL!1.31!24.16!REL;;chr2:238600998..238601013,+!p5@LRRFIP1!1.31!19.20!LRRFIP1;;chr6:12012249..12012266,+!p5@HIVEP1!1.30!32.52!HIVEP1;;chr6:106535598..106535637,+!p7@PRDM1!1.30!18.89!PRDM1;;chr2:113999360..113999386,-!p4@PAX8!1.30!18.89!PAX8;;chr21:36421535..36421610,-!p2@RUNX1!1.29!64.11!RUNX1;;chr3:39195037..39195069,-!p2@CSRNP1!1.28!108.71!CSRNP1;;chr13:41635029..41635044,-!p4@ELF1!1.27!37.47!ELF1;;chr1:38325227..38325246,-!p2@MTF1!1.27!24.16!MTF1;;chr2:28615716..28615733,+!p1@FOSL2!1.26!795.64!FOSL2;;chr18:3449720..3449749,+!p2@TGIF1!1.26!35.93!TGIF1;;chr2:231090471..231090504,+!p2@SP140!1.26!17.34!SP140;;chr4:103423079..103423112,+!p4@NFKB1!1.26!17.03!NFKB1;;chr7:17338266..17338282,+!p1@AHR!1.25!177.46!AHR;;chr1:157108130..157108173,-!p1@ETV3!1.25!119.24!ETV3;;chr6:12011943..12012015,+!p2@HIVEP1!1.25!53.27!HIVEP1;;chr8:123793988..123794016,+!p1@ZHX2!1.25!29.42!ZHX2;;chr12:11802753..11802834,+!p2@ETV6!1.24!78.36!ETV6;;chr18:3448455..3448480,+!p5@TGIF1!1.24!30.04!TGIF1;;chr21:30672433..30672464,+!p6@BACH1!1.24!16.41!BACH1;;chr3:69788576..69788648,+!p1@MITF!1.23!83.93!MITF;;chr4:83822199..83822239,+!p2@THAP9!1.23!18.89!THAP9;;chr6:391743..391759,+!p1@IRF4!1.23!16.10!IRF4;;chr19:45251395..45251432,+!p8@BCL3!1.23!15.80!BCL3;;chr2:238600933..238600985,+!p3@LRRFIP1!1.22!84.24!LRRFIP1;;chr20:48807456..48807475,+!p3@CEBPB!1.22!29.73!CEBPB;;chr19:33793430..33793447,-!p1@CEBPA!1.21!63.49!CEBPA;;chr1:161736038..161736056,+!p4@ATF6!1.21!35.31!ATF6;;chr10:35484090..35484104,+!p6@CREM!1.21!15.18!CREM;;chr12:57914700..57914737,+!p7@MBD6!1.20!14.87!MBD6;;chrX:129244430..129244442,-!p5@ELF4!1.20!14.87!ELF4;;chr3:170075436..170075520,+!p1@SKIL!1.18!298.87!SKIL;;chr10:3827371..3827386,-!p2@KLF6!1.18!117.38!KLF6;;chr3:126191157..126191171,-!p4@ZXDC!1.18!14.25!ZXDC;;chr19:36389839..36389857,-!p4@NFKBID!1.18!14.25!NFKBID;;chr14:75745523..75745537,+!p1@FOS!1.17!1619.45!FOS;;chr19:45252008..45252024,+!p2@BCL3!1.17!45.53!BCL3;;chr2:28618532..28618610,+!p4@FOSL2!1.17!23.85!FOSL2;;chr18:3449586..3449617,+!p8@TGIF1!1.17!22.30!TGIF1;;chr10:31288329..31288353,-!p7@ZNF438!1.17!13.94!ZNF438;;chr13:41593392..41593403,-!p7@ELF1!1.17!13.63!ELF1;;chr1:212738742..212738755,+!p2@ATF3!1.17!13.63!ATF3;;chr20:48807171..48807234,+!p4@CEBPB!1.16!29.42!CEBPB;;chr1:25256439..25256476,-!p3@RUNX3!1.16!13.32!RUNX3;;chr12:48298785..48298828,-!p1@VDR!1.15!69.06!VDR;;chr2:61108771..61108789,+!p4@REL!1.15!19.82!REL;;chr8:81397820..81397836,+!p2@ZBTB10!1.15!16.41!ZBTB10;;chr11:65430554..65430579,-!p3@RELA!1.14!32.52!RELA;;chr5:142782823..142782854,-!p3@NR3C1!1.14!18.27!NR3C1;;chr21:40177845..40177863,+!p1@ETS2!1.13!735.55!ETS2;;chr3:101568349..101568365,+!p1@NFKBIZ!1.13!649.14!NFKBIZ;;chr10:104155455..104155479,+!p1@NFKB2!1.13!183.66!NFKB2;;chr7:17338324..17338341,+!p3@AHR!1.13!42.12!AHR;;chr3:12329358..12329393,+!p3@PPARG!1.13!30.66!PPARG;;chr7:128577972..128578047,+!p1@IRF5!1.13!19.82!IRF5;;chr1:156470515..156470542,-!p2@MEF2D!1.12!63.80!MEF2D;;chr10:35416142..35416169,+!p3@CREM!1.12!32.52!CREM;;chrX:153305962..153305995,-!p5@MECP2!1.12!12.08!MECP2;;chr11:615942..615957,-!p1@IRF7!1.11!111.49!IRF7;;chr1:935467..935484,-!p1@HES4!1.11!52.34!HES4;;chr10:35484804..35484902,+!p2@CREM!1.11!45.22!CREM;;chr9:110250697..110250738,-!p2@KLF4!1.11!13.94!KLF4;;chr5:88178983..88179012,-!p1@MEF2C!1.10!90.12!MEF2C;;chr19:47616992..47617011,-!p4@ZC3H4!1.10!24.78!ZC3H4;;chr8:72756063..72756125,-!p1@MSC!1.10!23.85!MSC;;chr14:64971014..64971044,+!p4@ZBTB1!1.10!19.20!ZBTB1;;chr9:102584241..102584261,+!p4@NR4A3!1.10!17.96!NR4A3;;chr20:48807648..48807671,+!p9@CEBPB!1.10!16.72!CEBPB;;chr8:81397846..81397860,+!p3@ZBTB10!1.10!14.56!ZBTB10;;chr7:115670792..115670797,-!p2@TFEC!1.10!11.46!TFEC;;chr12:96588219..96588263,+!p2@ELK3!1.09!81.76!ELK3;;chr12:96588279..96588299,+!p4@ELK3!1.08!52.65!ELK3;;chr3:5020939..5020952,+!p2@BHLHE40!1.08!35.00!BHLHE40;;chr6:20403916..20403965,+!p3@E2F3!1.07!48.62!E2F3;;chr20:48807615..48807644,+!p6@CEBPB!1.07!17.96!CEBPB;;chr20:48809000..48809053,+!p12@CEBPB!1.07!14.25!CEBPB;;chr6:15246261..15246312,+!p1@JARID2!1.06!254.89!JARID2;;chr9:88969303..88969335,-!p1@ZCCHC6!1.06!99.11!ZCCHC6;;chr2:208394817..208394834,+!p3@CREB1!1.06!42.43!CREB1;;chr14:35872926..35872951,-!p4@NFKBIA!1.06!14.87!NFKBIA;;chr1:221052733..221052749,+!p2@HLX!1.06!13.63!HLX;;chr2:145275228..145275241,-!p11@ZEB2!1.06!12.70!ZEB2;;chr4:106066776..106066791,+!p9@TET2!1.06!10.53!TET2;;chr19:50432104..50432126,+!p6@ATF5!1.06!10.53!ATF5;;chr21:36260980..36261011,-!p1@RUNX1!1.04!292.67!RUNX1;;chr21:40177892..40177903,+!p2@ETS2!1.04!40.26!ETS2;;chr2:231280954..231280965,+!p2@SP100!1.04!18.58!SP100;;chr1:221052776..221052799,+!p1@HLX!1.04!18.27!HLX;;chr18:3449330..3449344,+!p10@TGIF1!1.04!13.32!TGIF1;;chr3:39195139..39195150,-!p3@CSRNP1!1.04!12.70!CSRNP1;;chr2:102091566..102091581,-!p1@RFX8!1.04!9.91!RFX8;;chr17:38497715..38497734,+!p8@RARA!1.04!9.91!RARA;;chr19:36389729..36389751,-!p3@NFKBID!1.04!9.91!NFKBID;;chr17:38474489..38474548,+!p1@RARA!1.03!312.80!RARA;;chr9:88969339..88969422,-!p2@ZCCHC6!1.03!75.88!ZCCHC6;;chr12:52431016..52431071,+!p4@NR4A1!1.03!11.46!NR4A1;;chr19:42627037..42627084,-!p3@POU2F2!1.03!9.60!POU2F2;;chr18:3449695..3449712,+!p9@TGIF1!1.02!14.87!TGIF1;;chr12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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000234;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000576;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000763;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000766;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000860;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405
+|ffid_belonging_in_development=CL:0000049,CL:0000134,CL:0002057
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 35: / Line 42: @@
 |fonse_treatment_closure=EFO:0000369,FF:0000625,FF:0000630,FF:0011102,FF:11889-125D8
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520B-glucan%252c%2520donor3.CNhs13495.11889-125D8.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520B-glucan%252c%2520donor3.CNhs13495.11889-125D8.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520B-glucan%252c%2520donor3.CNhs13495.11889-125D8.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520B-glucan%252c%2520donor3.CNhs13495.11889-125D8.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520B-glucan%252c%2520donor3.CNhs13495.11889-125D8.hg38.nobarcode.ctss.bed.gz
 |id=FF:11889-125D8
 |is_a=EFO:0002091;;FF:0011102
 |is_obsolete=
+|library_id=CNhs13495
+|library_id_phase_based=2:CNhs13495
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11889
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11889
 |name=CD14+ monocytes - treated with B-glucan, donor3
 |namespace=
@@ Line 43: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs13495,LSID1025,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=125
 |rna_catalog_number=
@@ Line 58: / Line 79: @@
 |rna_weight_ug=2.743605
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+|sample_category=primary cells
 |sample_cell_catalog=
 |sample_cell_line=
@@ Line 79: / Line 101: @@
 |top_motifs=FOSL2:4.6902785454;NFE2:4.61979268202;NFE2L2:4.54452264638;SREBF1,2:4.40119879736;BACH2:4.21943462103;HLF:4.10634670905;FOS_FOS{B,L1}_JUN{B,D}:4.07600414835;PAX2:4.02003416246;CEBPA,B_DDIT3:3.67005889758;SPIB:3.10496987773;ATF5_CREB3:2.99140056776;SPI1:2.93748608411;NFIL3:2.91627638368;HSF1,2:2.71514513826;ATF4:2.71433417407;NFKB1_REL_RELA:2.69121810209;EP300:2.60362271587;NFE2L1:2.58467286591;ATF6:2.58082962164;ETS1,2:2.56981962769;NANOG{mouse}:2.56751522739;CREB1:2.46478047212;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:2.40626373315;JUN:2.25710919346;FOXP3:2.12019882118;FOXN1:2.103224203;RUNX1..3:2.05606418525;DMAP1_NCOR{1,2}_SMARC:1.99575582945;MAFB:1.9469447056;NR1H4:1.87212716745;IRF1,2:1.54481321857;ATF2:1.49525702352;HIF1A:1.47182570933;PPARG:1.44795070604;PAX3,7:1.35619846525;ELF1,2,4:1.32658055753;STAT2,4,6:1.31833187941;IRF7:1.28179698046;TGIF1:1.13072024598;NFATC1..3:1.08772575177;PAX8:1.08679761047;PDX1:1.00714458112;HOX{A5,B5}:0.957227548022;RXRA_VDR{dimer}:0.881767804365;CDX1,2,4:0.740595333331;ESRRA:0.710704296656;HES1:0.705721828896;HMGA1,2:0.680126686092;PAX1,9:0.63155197494;HMX1:0.621886741688;XBP1:0.571969434491;BPTF:0.537010522063;TBP:0.513276330917;ALX4:0.509797806567;STAT5{A,B}:0.487050143115;SRF:0.458988504299;GLI1..3:0.427790000808;ESR1:0.348533167276;SMAD1..7,9:0.320766499758;AHR_ARNT_ARNT2:0.316800522879;MEF2{A,B,C,D}:0.297340069261;FOX{D1,D2}:0.201957077022;TFCP2:0.136497811792;ZBTB16:0.124286004645;NANOG:0.114681430486;FOXO1,3,4:0.111163370028;NR6A1:0.108737050415;TLX2:0.105388375625;RBPJ:0.0180443027428;EGR1..3:0.0141187794765;ALX1:0.00917056020089;PRDM1:-0.0225031022573;HBP1_HMGB_SSRP1_UBTF:-0.0567698475845;HOXA9_MEIS1:-0.0842405469592;EN1,2:-0.0877055369466;FOX{F1,F2,J1}:-0.106178413518;IKZF1:-0.112457292244;PITX1..3:-0.152612302668;RFX2..5_RFXANK_RFXAP:-0.1537518982;OCT4_SOX2{dimer}:-0.201602763682;POU2F1..3:-0.204449174815;IKZF2:-0.272112609336;GATA4:-0.318240507422;VSX1,2:-0.32401709428;MYB:-0.3758544767;FOXP1:-0.379665068571;NKX3-1:-0.509035328001;POU5F1:-0.63845613442;DBP:-0.721929970537;SOX2:-0.734367293198;FOXL1:-0.752863230306;MZF1:-0.764800730938;NFIX:-0.81643760011;FOXD3:-0.825577958173;SPZ1:-0.888805166047;TBX4,5:-0.897574409706;RFX1:-0.898447335429;REST:-0.91616197267;RXR{A,B,G}:-0.932275014045;HNF4A_NR2F1,2:-0.942644106156;T:-0.942913563449;RORA:-0.967794461017;NHLH1,2:-0.976556761509;RREB1:-0.977890338124;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.978117168403;PRRX1,2:-1.00601045968;PAX6:-1.02808665112;PAX4:-1.03457951366;ZNF238:-1.08745180101;STAT1,3:-1.0934574948;HNF1A:-1.09779381908;SP1:-1.10488129865;FOXM1:-1.15444802414;TAL1_TCF{3,4,12}:-1.15475261118;PATZ1:-1.17783116364;ZNF148:-1.19069192367;ZBTB6:-1.19700710259;MYFfamily:-1.2059964797;TEF:-1.23357891438;GATA6:-1.27699712069;CUX2:-1.30982532903;MED-1{core}:-1.31839553256;ZNF384:-1.33144673967;CRX:-1.33314564736;ZFP161:-1.333463658;TFDP1:-1.36668753129;NKX2-1,4:-1.37317308579;ZIC1..3:-1.37670883671;GZF1:-1.39459436415;NR3C1:-1.40047999304;SOX{8,9,10}:-1.40825451555;MTE{core}:-1.42333645174;TFAP2B:-1.46677254293;HOX{A4,D4}:-1.48479557522;NKX2-3_NKX2-5:-1.48864170473;SOX5:-1.50097247895;TLX1..3_NFIC{dimer}:-1.51188767738;GTF2A1,2:-1.51381526038;NKX6-1,2:-1.51553274742;ELK1,4_GABP{A,B1}:-1.57189864138;TEAD1:-1.63346834536;MAZ:-1.63648157241;E2F1..5:-1.63862050779;POU3F1..4:-1.64716022219;TFAP2{A,C}:-1.66146861124;TP53:-1.69181965482;MTF1:-1.7051921852;ZEB1:-1.71911055167;BREu{core}:-1.71944744501;GTF2I:-1.72203914247;MYOD1:-1.72213499557;TFAP4:-1.72573742258;FOXA2:-1.72586912353;EBF1:-1.73061085618;NKX3-2:-1.87425342336;HIC1:-1.8837945085;POU6F1:-1.89201317951;XCPE1{core}:-1.91488788087;bHLH_family:-1.93484104186;MYBL2:-1.94925598743;AIRE:-1.95101945116;NFY{A,B,C}:-1.97133702331;KLF4:-1.97464394415;ONECUT1,2:-1.97929004494;PBX1:-1.9812769725;NKX2-2,8:-2.03313511267;SNAI1..3:-2.04874358321;PAX5:-2.06948400611;UFEwm:-2.07085400598;HOX{A6,A7,B6,B7}:-2.16210536371;ZNF423:-2.1888229397;GCM1,2:-2.1929878528;ADNP_IRX_SIX_ZHX:-2.29847973177;GFI1B:-2.32772914402;LMO2:-2.43910739945;EVI1:-2.46613174184;NR5A1,2:-2.47256759029;ARID5B:-2.47916361499;TOPORS:-2.49654948958;CDC5L:-2.50087178713;FOX{I1,J2}:-2.53981554005;POU1F1:-2.58608069001;AR:-2.60416097078;SOX17:-2.66743067467;NRF1:-2.67248835068;YY1:-2.87479977144;FOXQ1:-3.04943549255;GFI1:-3.08600428615;LHX3,4:-3.18009974791;ZNF143:-3.32899601652;HAND1,2:-3.62814847899;LEF1_TCF7_TCF7L1,2:-3.73491546257
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11889-125D8;search_select_hide=table117:FF:11889-125D8
 }}

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FF:11889-125D8: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 18:27, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0