FF:11681-122H7: Difference between revisions

Latest revision as of 18:14, 4 June 2020

Name:	Urothelial Cells, donor3
Species:	Human (Homo sapiens)
Library ID:	CNhs12122
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	bladder
dev stage	NA
sex	NA
age	NA
cell type	urothelial cell
cell line	NA
company	Sciencell/3H
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	SC4325
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005902

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12122		CAGE		DRX008527		DRR009399

Accession ID Hg19

Library id		BAM		CTSS
CNhs12122		DRZ000824		DRZ002209

Accession ID Hg38

Library id		BAM		CTSS
CNhs12122		DRZ012174		DRZ013559

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.103
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.333
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.508
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.367
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	-0.036
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.341
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.118
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.447
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0.83
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.586
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	1.293
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.0381
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0.658
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.00454
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.613
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.594
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0.0684
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12122

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.526
MA0003.1	MA0003.1	0.39
MA0004.1	MA0004.1	0.584
MA0006.1	MA0006.1	0.138
MA0007.1	MA0007.1	0.32
MA0009.1	MA0009.1	0.345
MA0014.1	MA0014.1	0.641
MA0017.1	MA0017.1	0.0987
MA0018.2	MA0018.2	0.008
MA0019.1	MA0019.1	0.294
MA0024.1	MA0024.1	0.00284
MA0025.1	MA0025.1	0.559
MA0027.1	MA0027.1	0.897
MA0028.1	MA0028.1	0.00903
MA0029.1	MA0029.1	0.256
MA0030.1	MA0030.1	0.34
MA0031.1	MA0031.1	0.0715
MA0035.2	MA0035.2	0.336
MA0038.1	MA0038.1	0.331
MA0039.2	MA0039.2	0.0365
MA0040.1	MA0040.1	0.314
MA0041.1	MA0041.1	0.352
MA0042.1	MA0042.1	0.664
MA0043.1	MA0043.1	0.00798
MA0046.1	MA0046.1	0.0845
MA0047.2	MA0047.2	0.287
MA0048.1	MA0048.1	0.92
MA0050.1	MA0050.1	0.00186
MA0051.1	MA0051.1	0.00791
MA0052.1	MA0052.1	0.273
MA0055.1	MA0055.1	0.328
MA0057.1	MA0057.1	0.084
MA0058.1	MA0058.1	0.286
MA0059.1	MA0059.1	0.855
MA0060.1	MA0060.1	0.11
MA0061.1	MA0061.1	0.62
MA0062.2	MA0062.2	2.48301e-5
MA0065.2	MA0065.2	0.00833
MA0066.1	MA0066.1	0.0209
MA0067.1	MA0067.1	0.0461
MA0068.1	MA0068.1	0.0147
MA0069.1	MA0069.1	0.807
MA0070.1	MA0070.1	0.893
MA0071.1	MA0071.1	0.668
MA0072.1	MA0072.1	0.619
MA0073.1	MA0073.1	0.918
MA0074.1	MA0074.1	0.45
MA0076.1	MA0076.1	0.0011
MA0077.1	MA0077.1	0.179
MA0078.1	MA0078.1	0.504
MA0079.2	MA0079.2	0.506
MA0080.2	MA0080.2	2.93898e-4
MA0081.1	MA0081.1	0.0107
MA0083.1	MA0083.1	0.603
MA0084.1	MA0084.1	0.173
MA0087.1	MA0087.1	0.622
MA0088.1	MA0088.1	0.721
MA0090.1	MA0090.1	0.0139
MA0091.1	MA0091.1	0.542
MA0092.1	MA0092.1	0.265
MA0093.1	MA0093.1	0.457
MA0099.2	MA0099.2	3.53475e-9
MA0100.1	MA0100.1	0.0417
MA0101.1	MA0101.1	0.63
MA0102.2	MA0102.2	0.0602
MA0103.1	MA0103.1	6.56207e-5
MA0104.2	MA0104.2	0.295
MA0105.1	MA0105.1	0.47
MA0106.1	MA0106.1	1.11382e-5
MA0107.1	MA0107.1	0.955
MA0108.2	MA0108.2	0.00364
MA0111.1	MA0111.1	0.965
MA0112.2	MA0112.2	0.00476
MA0113.1	MA0113.1	0.464
MA0114.1	MA0114.1	0.0712
MA0115.1	MA0115.1	0.812
MA0116.1	MA0116.1	0.21
MA0117.1	MA0117.1	0.324
MA0119.1	MA0119.1	0.081
MA0122.1	MA0122.1	0.976
MA0124.1	MA0124.1	0.457
MA0125.1	MA0125.1	0.268
MA0131.1	MA0131.1	0.157
MA0135.1	MA0135.1	0.046
MA0136.1	MA0136.1	7.74112e-5
MA0137.2	MA0137.2	0.00281
MA0138.2	MA0138.2	0.0469
MA0139.1	MA0139.1	0.433
MA0140.1	MA0140.1	0.829
MA0141.1	MA0141.1	0.327
MA0142.1	MA0142.1	0.219
MA0143.1	MA0143.1	0.689
MA0144.1	MA0144.1	0.556
MA0145.1	MA0145.1	0.0411
MA0146.1	MA0146.1	0.063
MA0147.1	MA0147.1	0.403
MA0148.1	MA0148.1	0.231
MA0149.1	MA0149.1	0.0599
MA0150.1	MA0150.1	0.629
MA0152.1	MA0152.1	0.00288
MA0153.1	MA0153.1	0.0802
MA0154.1	MA0154.1	0.108
MA0155.1	MA0155.1	0.198
MA0156.1	MA0156.1	0.00137
MA0157.1	MA0157.1	0.185
MA0159.1	MA0159.1	0.224
MA0160.1	MA0160.1	0.462
MA0162.1	MA0162.1	0.0933
MA0163.1	MA0163.1	0.431
MA0164.1	MA0164.1	0.619
MA0258.1	MA0258.1	0.031
MA0259.1	MA0259.1	0.388

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12122

Novel motif	Logo	P-value
1	1	0.563
10	10	0.54
100	100	0.708
101	101	0.292
102	102	0.323
103	103	0.206
104	104	0.264
105	105	0.108
106	106	0.0139
107	107	0.00651
108	108	0.187
109	109	0.0478
11	11	0.134
110	110	0.256
111	111	0.189
112	112	0.329
113	113	0.243
114	114	0.367
115	115	0.1
116	116	0.552
117	117	0.716
118	118	0.796
119	119	0.0598
12	12	0.663
120	120	0.0726
121	121	0.547
122	122	0.355
123	123	0.962
124	124	0.296
125	125	0.451
126	126	0.691
127	127	0.1
128	128	0.0299
129	129	0.0317
13	13	0.296
130	130	0.474
131	131	0.873
132	132	0.247
133	133	0.0158
134	134	0.339
135	135	0.44
136	136	0.913
137	137	0.284
138	138	0.8
139	139	0.219
14	14	0.675
140	140	0.444
141	141	0.913
142	142	0.0151
143	143	0.256
144	144	0.553
145	145	0.124
146	146	0.0438
147	147	0.38
148	148	0.839
149	149	0.248
15	15	0.596
150	150	0.243
151	151	0.275
152	152	0.034
153	153	0.473
154	154	0.713
155	155	0.266
156	156	0.0934
157	157	0.336
158	158	0.851
159	159	0.853
16	16	0.152
160	160	0.0917
161	161	0.306
162	162	0.104
163	163	0.931
164	164	0.851
165	165	0.326
166	166	0.861
167	167	0.357
168	168	0.469
169	169	0.0449
17	17	0.103
18	18	0.215
19	19	0.348
2	2	0.139
20	20	0.709
21	21	0.919
22	22	0.207
23	23	0.0928
24	24	0.259
25	25	0.689
26	26	0.261
27	27	0.336
28	28	0.941
29	29	0.653
3	3	0.442
30	30	0.203
31	31	0.375
32	32	0.419
33	33	0.538
34	34	0.385
35	35	0.544
36	36	0.829
37	37	0.453
38	38	0.252
39	39	0.272
4	4	0.334
40	40	0.0114
41	41	0.816
42	42	0.763
43	43	0.293
44	44	0.217
45	45	0.167
46	46	0.31
47	47	0.376
48	48	0.23
49	49	0.446
5	5	0.79
50	50	0.45
51	51	0.449
52	52	0.2
53	53	0.962
54	54	0.356
55	55	0.315
56	56	0.286
57	57	0.328
58	58	0.729
59	59	0.0325
6	6	0.513
60	60	0.126
61	61	0.848
62	62	0.76
63	63	0.151
64	64	0.275
65	65	0.0622
66	66	0.82
67	67	0.732
68	68	0.665
69	69	0.0422
7	7	0.638
70	70	2.50053e-4
71	71	0.364
72	72	0.876
73	73	0.0572
74	74	0.0225
75	75	0.401
76	76	0.626
77	77	0.0157
78	78	0.157
79	79	0.161
8	8	0.147
80	80	0.824
81	81	0.774
82	82	0.191
83	83	0.71
84	84	0.855
85	85	0.134
86	86	0.934
87	87	0.359
88	88	0.223
89	89	0.0732
9	9	0.503
90	90	0.341
91	91	0.252
92	92	0.176
93	93	0.853
94	94	0.371
95	95	0.249
96	96	0.899
97	97	0.908
98	98	0.418
99	99	0.0375

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12122

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000191 human urothelial cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000244 (transitional epithelial cell)
0000731 (urothelial cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000483 (epithelium)
0005910 (transitional epithelium)
0000479 (tissue)
0004119 (endoderm-derived structure)
0006554 (urinary system structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0005911 (endo-epithelium)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0000486 (multilaminar epithelium)
0010317 (germ layer / neural crest derived structure)
0000365 (urothelium)
0001008 (renal system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000191 (human urothelial cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
NA

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000483,UBERON:0005910,UBERON:0000479,UBERON:0006554,UBERON:0004119,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0005911,UBERON:0005423,UBERON:0000467,UBERON:0001062,UBERON:0000119,UBERON:0005291,UBERON:0000486,UBERON:0000925,UBERON:0006598,UBERON:0000365,UBERON:0002532,UBERON:0001008,UBERON:0006595
+|DRA_sample_Accession=CAGE@SAMD00005902
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000548,CL:0000012,CL:0000063,CL:0000066,CL:0002371,CL:0000004,CL:0000255,CL:0000244,CL:0000731
+|accession_numbers=CAGE;DRX008527;DRR009399;DRZ000824;DRZ002209;DRZ012174;DRZ013559
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000483,UBERON:0005910,UBERON:0000479,UBERON:0004119,UBERON:0006554,UBERON:0000061,UBERON:0000465,UBERON:0005911,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000486,UBERON:0010317,UBERON:0000365,UBERON:0001008
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000255,CL:0000244,CL:0000731
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000191
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr1:209979467..209979494,-!p1@IRF6!2.68!532.12!IRF6;;chr1:209979411..209979433,-!p2@IRF6!2.26!181.81!IRF6;;chr1:6479968..6479986,-!p1@HES2!2.13!134.36!HES2;;chr17:7493405..7493419,-!p1@SOX15!2.09!123.27!SOX15;;chr12:54785074..54785122,-!p2@ZNF385A!1.90!118.40!ZNF385A;;chr12:54785054..54785072,-!p4@ZNF385A!1.84!76.71!ZNF385A;;chr3:189507432..189507459,+!p1@TP63!1.78!58.98!TP63;;chr4:57547454..57547469,-!p1@HOPX!1.74!53.66!HOPX;;chr17:80797886..80797906,-!p1@ZNF750!1.73!52.77!ZNF750;;chr17:7492684..7492778,-!p2@SOX15!1.71!102.43!SOX15;;chr6:10415276..10415341,-!p2@TFAP2A!1.67!54.99!TFAP2A;;chr6:10412600..10412637,-!p1@TFAP2A!1.59!62.08!TFAP2A;;chr2:176969228..176969260,+!p1@HOXD11!1.59!37.69!HOXD11;;chr15:83953397..83953425,-!p1@BNC1!1.58!42.57!BNC1;;chr8:10588010..10588030,-!p1@SOX7!1.55!34.59!SOX7;;chr6:34524093..34524135,-!p1@SPDEF!1.53!32.81!SPDEF;;chr19:45908292..45908374,-!p1@PPP1R13L!1.49!252.31!PPP1R13L;;chr11:34642612..34642646,+!p1@EHF!1.49!30.15!EHF;;chr3:111314186..111314204,-!p1@ZBED2!1.49!29.71!ZBED2;;chr6:1312325..1312340,+!p1@FOXQ1!1.46!45.23!FOXQ1;;chr6:34524025..34524045,-!p3@SPDEF!1.46!27.94!SPDEF;;chr15:67458861..67458879,+!p17@SMAD3!1.43!26.16!SMAD3;;chr6:34524049..34524089,-!p2@SPDEF!1.42!25.28!SPDEF;;chr10:8096631..8096660,+!p1@GATA3!1.40!28.82!GATA3;;chr2:176969179..176969226,+!p2@HOXD11!1.36!22.17!HOXD11;;chr11:65554528..65554546,+!p1@OVOL1!1.33!20.40!OVOL1;;chr7:27205106..27205134,-!p2@HOXA9!1.31!19.51!HOXA9;;chr1:209979449..209979460,-!p3@IRF6!1.29!18.62!IRF6;;chr13:73633131..73633149,+!p1@KLF5!1.26!178.70!KLF5;;chr2:46524897..46524911,+!p2@EPAS1!1.26!47.45!EPAS1;;chr1:201979703..201979721,+!p2@ELF3!1.25!16.85!ELF3;;chr22:19748231..19748317,+!p1@TBX1!1.24!16.41!TBX1;;chr7:96654133..96654150,-!p1@DLX5!1.22!15.52!DLX5;;chr6:10413188..10413249,-!p7@TFAP2A!1.17!13.75!TFAP2A;;chr14:38064429..38064486,-!p1@FOXA1!1.16!13.30!FOXA1;;chr1:24645832..24645853,+!p1@GRHL3!1.14!12.86!GRHL3;;chr8:49833948..49833973,-!p2@SNAI2!1.11!75.38!SNAI2;;chr8:102504651..102504683,+!p1@GRHL2!1.11!11.97!GRHL2;;chr16:86612320..86612394,+!p1@FOXL1!1.11!11.97!FOXL1;;chr8:49833978..49833996,-!p1@SNAI2!1.10!235.02!SNAI2;;chr17:45928443..45928473,-!p2@SP6!1.10!11.53!SP6;;chr7:27205136..27205164,-!p1@HOXA9!1.08!11.09!HOXA9;;chr12:53625966..53626012,-!p2@RARG!1.07!28.82!RARG;;chr6:10412576..10412599,-!p5@TFAP2A!1.07!10.64!TFAP2A;;chr1:201979743..201979762,+!p1@ELF3!1.07!10.64!ELF3;;chr1:209979375..209979386,-!p4@IRF6!1.07!10.64!IRF6;;chr12:66218255..66218304,+!p3@HMGA2!1.05!27.94!HMGA2;;chr6:10415484..10415508,-!p3@TFAP2A!1.05!10.20!TFAP2A;;chr1:37940170..37940190,+!p1@ZC3H12A!1.03!121.06!ZC3H12A;;chr2:122042770..122042785,-!p1@TFCP2L1!1.03!9.76!TFCP2L1;;chr2:46524878..46524891,+!p3@EPAS1!1.02!16.85!EPAS1;;chr17:80797863..80797874,-!p2@ZNF750!1.01!9.31!ZNF750;;chr11:129245526..129245553,+!p1@BARX2!1.01!9.31!BARX2;;chr10:8096772..8096787,+!p2@GATA3!1.00!10.64!GATA3;;chr1:2461692..2461710,-!p1@HES5!0.97!8.43!HES5;;chr16:79634624..79634642,-!p1@MAF!0.95!31.93!MAF;;chr2:176994408..176994492,+!p1@HOXD8!0.95!7.98!HOXD8;;chr17:38465441..38465481,+!p6@RARA!0.93!9.31!RARA;;chr17:46806067..46806097,-!p1@HOXB13!0.93!7.54!HOXB13;;chr2:10091815..10091864,+!p1@GRHL1!0.92!9.76!GRHL1;;chr12:115121962..115121987,-!p1@TBX3!0.91!62.97!TBX3;;chr19:45908278..45908282,-!p5@PPP1R13L!0.91!7.09!PPP1R13L;;chr1:24645921..24645973,+!p2@GRHL3!0.91!7.09!GRHL3;;chr14:21566731..21566836,-!p1@ZNF219!0.90!77.60!ZNF219;;chr3:5021026..5021035,+!p5@BHLHE40!0.89!8.43!BHLHE40;;chr10:8095593..8095625,+!p3@GATA3!0.89!7.98!GATA3;;chr17:3571863..3571881,-!p1@TAX1BP3!0.88!490.43!TAX1BP3;;chr19:42636586..42636607,-!p1@POU2F2!0.88!19.07!POU2F2;;chr6:1312155..1312187,+!p2@FOXQ1!0.88!6.65!FOXQ1;;chr7:96654026..96654061,-!p2@DLX5!0.88!6.65!DLX5;;chr17:38465413..38465438,+!p5@RARA!0.87!10.64!RARA;;chr5:174151553..174151610,+!p1@MSX2!0.86!10.64!MSX2;;chr6:106546808..106546833,+!p3@PRDM1!0.86!7.98!PRDM1;;chr1:10856665..10856683,-!p4@CASZ1!0.86!6.21!CASZ1;;chr19:17356189..17356221,-!p2@NR2F6!0.85!10.20!NR2F6;;chr8:128748308..128748324,+!p2@MYC!0.83!172.49!MYC;;chr17:26833339..26833378,+!p1@FOXN1!0.83!5.76!FOXN1;;chr1:24646263..24646277,+!p4@GRHL3!0.83!5.76!GRHL3;;chr1:40367668..40367684,-!p2@MYCL1!0.83!5.76!MYCL1;;chr5:134369905..134369972,-!p1@PITX1!0.82!8.87!PITX1;;chr20:55204351..55204377,+!p1@TFAP2C!0.81!7.09!TFAP2C;;chr1:40367530..40367597,-!p1@MYCL1!0.80!10.20!MYCL1;;chr3:12330560..12330579,+!p1@PPARG!0.80!6.21!PPARG;;chr20:18038521..18038571,-!p1@OVOL2!0.80!5.32!OVOL2;;chr14:37131058..37131139,+!p1@PAX9!0.80!5.32!PAX9;;chr17:70117153..70117174,+!p1@SOX9!0.79!58.53!SOX9;;chr2:43453734..43453751,-!p1@ZFP36L2!0.78!589.32!ZFP36L2;;chr11:65667884..65667895,-!p2@FOSL1!0.78!21.28!FOSL1;;chr1:935398..935465,-!p2@HES4!0.77!10.64!HES4;;chr11:34645791..34645836,+!p3@EHF!0.77!4.88!EHF;;chr11:65554563..65554576,+!p2@OVOL1!0.77!4.88!OVOL1;;chr3:189507460..189507471,+!p3@TP63!0.77!4.88!TP63;;chr3:193853927..193853944,+!p1@HES1!0.76!170.72!HES1;;chr11:47236584..47236679,+!p1@DDB2!0.76!56.76!DDB2;;chr17:41623692..41623715,-!p1@ETV4!0.76!22.17!ETV4;;chr19:33793430..33793447,-!p1@CEBPA!0.76!21.73!CEBPA;;chr16:79633894..79633954,-!p3@MAF!0.76!9.76!MAF;;chr12:66218183..66218209,+!p4@HMGA2!0.76!9.76!HMGA2;;chr7:27135591..27135658,-!p1@HOXA1!0.76!9.76!HOXA1;;chr3:5021113..5021180,+!p1@BHLHE40!0.75!357.40!BHLHE40;;chr17:46687959..46688007,-!p2@HOXB7!0.75!6.65!HOXB7;;chr15:83953694..83953708,-!p4@BNC1!0.74!4.43!BNC1;;chr3:111314230..111314241,-!p2@ZBED2!0.74!4.43!ZBED2;;chr12:54332608..54332636,+!p1@HOXC13!0.74!4.43!HOXC13;;chr5:2751762..2751784,-!p1@IRX2!0.74!4.43!IRX2;;chr6:10419824..10419840,-!p9@TFAP2A!0.74!4.43!TFAP2A;;chr7:27192185..27192209,-!p1@HOXA3!0.74!4.43!HOXA3;;chr9:137218281..137218340,+!p1@RXRA!0.73!139.24!RXRA;;chr2:60780607..60780624,-!p2@BCL11A!0.73!14.63!BCL11A;;chr10:48355030..48355090,+!p1@ZNF488!0.73!5.76!ZNF488;;chr2:60778035..60778060,-!p4@BCL11A!0.73!5.32!BCL11A;;chr6:1389789..1389821,+!p1@FOXF2!0.70!5.76!FOXF2;;chr6:10419768..10419819,-!p6@TFAP2A!0.70!3.99!TFAP2A;;chr7:27224842..27224872,-!p1@HOXA11!0.70!3.99!HOXA11;;chr15:67458836..67458859,+!p22@SMAD3!0.70!3.99!SMAD3;;chr19:20278043..20278054,+!p2@ZNF486!0.70!3.99!ZNF486;;chr2:176969097..176969109,+!p3@HOXD11!0.70!3.99!HOXD11;;chr2:176969124..176969155,+!p5@HOXD11!0.70!3.99!HOXD11;;chr11:34642656..34642667,+!p2@EHF!0.70!3.99!EHF;;chr6:21597765..21597779,+!p2@SOX4!0.69!35.92!SOX4;;chr21:40177845..40177863,+!p1@ETS2!0.68!261.18!ETS2;;chr1:935467..935484,-!p1@HES4!0.68!19.07!HES4;;chr10:104155480..104155534,+!p2@NFKB2!0.67!27.49!NFKB2;;chr22:30162893..30162907,-!p2@ZMAT5!0.67!4.88!ZMAT5;;chr15:67418047..67418093,+!p4@SMAD3!0.67!4.88!SMAD3;;chr19:17356697..17356762,-!p1@NR2F6!0.66!56.76!NR2F6;;chr3:5021268..5021282,+!p4@BHLHE40!0.66!7.98!BHLHE40;;chr20:42136308..42136358,+!p2@L3MBTL1!0.66!4.88!L3MBTL;;chr2:45236540..45236577,-!p1@SIX2!0.66!3.55!SIX2;;chr3:189507523..189507535,+!p5@TP63!0.66!3.55!TP63;;chr15:101069113..101069169,-!p1@CERS3!0.66!3.55!CERS3;;chr17:45928521..45928539,-!p1@SP6!0.66!3.55!SP6;;chr5:2751785..2751808,-!p2@IRX2!0.66!3.55!IRX2;;chr11:615570..615721,-!p2@IRF7!0.65!7.54!IRF7;;chr1:10754477..10754517,-!p1@CASZ1!0.65!6.21!CASZ1;;chr15:67418119..67418162,+!p5@SMAD3!0.65!3.99!SMAD3;;chr12:66218598..66218645,+!p2@HMGA2!0.64!18.18!HMGA2;;chr12:27485762..27485776,+!p3@ARNTL2!0.64!10.20!ARNTL2;;chr6:10412392..10412409,-!p4@TFAP2A!0.64!3.99!TFAP2A;;chr14:23755297..23755350,-!p1@HOMEZ!0.63!46.56!HOMEZ;;chr1:59249732..59249749,-!p2@JUN!0.63!46.56!JUN;;chr19:4065485..4065546,-!p2@ZBTB7A!0.63!34.14!ZBTB7A;;chr19:15543565..15543579,-!p2@WIZ!0.63!16.85!WIZ;;chr6:21593973..21593988,+!p1@SOX4!0.62!137.02!SOX4;;chr17:17726907..17726958,-!p2@SREBF1!0.62!23.06!SREBF1;;chr14:69259772..69259790,-!p1@ZFP36L1!0.61!376.47!ZFP36L1;;chr1:59249707..59249727,-!p1@JUN!0.61!154.76!JUN;;chr11:64073022..64073056,+!p1@ESRRA!0.61!44.34!ESRRA;;chr19:45579725..45579743,-!p1@ZNF296!0.61!16.41!ZNF296;;chr1:10856694..10856715,-!p3@CASZ1!0.61!3.10!CASZ1;;chr11:45202609..45202623,+!p@chr11:45202609..45202623,+!0.61!3.10!PRDM11;;chr5:50679228..50679288,+!p1@ISL1!0.61!3.10!ISL1;;chr7:27196217..27196246,-!p2@HOXA7!0.61!3.10!HOXA7;;chr8:102504690..102504704,+!p3@GRHL2!0.61!3.10!GRHL2;;chr8:102504979..102505010,+!p2@GRHL2!0.61!3.10!GRHL2;;chr15:67430351..67430366,+!p10@SMAD3!0.61!3.10!SMAD3;;chr17:36105042..36105060,-!p1@HNF1B!0.61!3.10!HNF1B;;chr17:46682321..46682362,-!p1@HOXB6!0.61!3.10!HOXB6;;chr17:46703212..46703238,-!p2@HOXB9!0.61!3.10!HOXB9;;chr18:45663490..45663528,-!p2@ZBTB7C!0.61!3.10!ZBTB7C;;chr2:242556880..242556899,-!p5@THAP4!0.61!3.10!THAP4;;chr2:45236579..45236596,-!p2@SIX2!0.61!3.10!SIX2;;chr1:8926441..8926473,-!p10@ENO1!0.60!4.88!ENO1;;chr2:46524865..46524870,+!p9@EPAS1!0.60!3.55!EPAS1;;chr8:48650715..48650735,-!p1@CEBPD!0.59!451.41!CEBPD;;chr22:42229246..42229270,+!p2@SREBF2!0.59!43.90!SREBF2;;chr6:35465058..35465077,-!p2@TEAD3!0.59!3.10!TEAD3;;chr19:12902289..12902307,+!p1@JUNB!0.58!802.61!JUNB;;chr16:79634595..79634620,-!p2@MAF!0.58!5.76!MAF;;chr20:2673383..2673441,+!p1@EBF4!0.58!4.88!EBF4;;chr20:50721803..50721857,-!p2@ZFP64!0.58!4.88!ZFP64;;chr12:66218212..66218244,+!p5@HMGA2!0.58!4.43!HMGA2;;chr6:7108569..7108683,+!p3@RREB1!0.57!12.86!RREB1;;chr14:61116183..61116208,-!p1@SIX1!0.57!12.42!SIX1;;chr19:52674853..52674892,-!p2@ZNF836!0.57!8.43!ZNF836;;chr17:3571887..3571918,-!p2@TAX1BP3!0.56!36.80!TAX1BP3;;chr2:208030647..208030689,-!p1@KLF7!0.56!27.05!KLF7;;chr11:62369204..62369217,-!p7@MTA2!0.56!6.65!MTA2;;chr12:66218378..66218401,+!p6@HMGA2!0.56!4.43!HMGA2;;chr10:77161650..77161661,-!p4@ZNF503!0.56!3.99!ZNF503;;chr22:19746969..19746987,+!p2@TBX1!0.56!2.66!TBX1;;chr2:113994526..113994556,-!p3@PAX8!0.56!2.66!PAX8;;chr3:138665937..138665968,-!p1@FOXL2!0.56!2.66!FOXL2;;chr20:50722202..50722217,-!p7@ZFP64!0.56!2.66!ZFP64;;chr17:36105074..36105086,-!p2@HNF1B!0.56!2.66!HNF1B;;chr17:7492504..7492520,-!p3@SOX15!0.56!2.66!SOX15;;chr5:134369879..134369898,-!p2@PITX1!0.56!2.66!PITX1;;chr5:174151612..174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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000731;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001008;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005911
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 35: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Urothelial%2520Cells%252c%2520donor3.CNhs12122.11681-122H7.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Urothelial%2520Cells%252c%2520donor3.CNhs12122.11681-122H7.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Urothelial%2520Cells%252c%2520donor3.CNhs12122.11681-122H7.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Urothelial%2520Cells%252c%2520donor3.CNhs12122.11681-122H7.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Urothelial%2520Cells%252c%2520donor3.CNhs12122.11681-122H7.hg38.nobarcode.ctss.bed.gz
 |id=FF:11681-122H7
 |is_a=EFO:0002091;;FF:0000191
 |is_obsolete=
+|library_id=CNhs12122
+|library_id_phase_based=2:CNhs12122
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11681
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11681
 |name=Urothelial Cells, donor3
 |namespace=FANTOM5
@@ Line 43: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12122,LSID839,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=122
 |rna_catalog_number=SC4325
@@ Line 58: / Line 78: @@
 |rna_weight_ug=10
 |sample_age=
+|sample_category=primary cells
 |sample_cell_catalog=lot:4449
 |sample_cell_line=
@@ Line 79: / Line 100: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11681-122H7;search_select_hide=table117:FF:11681-122H7
 }}

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FF:11681-122H7: Difference between revisions

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Latest revision as of 18:14, 4 June 2020

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