FF:11654-122E7: Difference between revisions

Latest revision as of 18:13, 4 June 2020

Name:	Meningeal Cells, donor3
Species:	Human (Homo sapiens)
Library ID:	CNhs12731
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	meninges
dev stage	NA
sex	NA
age	NA
cell type	meningeal cell
cell line	NA
company	Sciencell/3H
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	4055
catalog number	SC1405
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004675

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12731		CAGE		DRX008343		DRR009215

Accession ID Hg19

Library id		BAM		CTSS
CNhs12731		DRZ000640		DRZ002025

Accession ID Hg38

Library id		BAM		CTSS
CNhs12731		DRZ011990		DRZ013375

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.172
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.634
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0.042
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.0307
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	-0.0327
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.127
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.338
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0.0511
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.22
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.212
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.247
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.614
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.0307
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0.0307
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	-0.0407
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.581
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.0594
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.587
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	-0.00386
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.0594
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.0864
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.392
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.183
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.257
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12731

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.538
MA0003.1	MA0003.1	0.183
MA0004.1	MA0004.1	0.503
MA0006.1	MA0006.1	0.297
MA0007.1	MA0007.1	0.251
MA0009.1	MA0009.1	0.915
MA0014.1	MA0014.1	0.937
MA0017.1	MA0017.1	0.744
MA0018.2	MA0018.2	0.00157
MA0019.1	MA0019.1	0.414
MA0024.1	MA0024.1	1.69776e-16
MA0025.1	MA0025.1	0.0564
MA0027.1	MA0027.1	0.784
MA0028.1	MA0028.1	0.00483
MA0029.1	MA0029.1	0.672
MA0030.1	MA0030.1	0.00896
MA0031.1	MA0031.1	0.0544
MA0035.2	MA0035.2	0.179
MA0038.1	MA0038.1	0.0059
MA0039.2	MA0039.2	0.542
MA0040.1	MA0040.1	0.974
MA0041.1	MA0041.1	0.766
MA0042.1	MA0042.1	0.722
MA0043.1	MA0043.1	3.2894e-4
MA0046.1	MA0046.1	0.642
MA0047.2	MA0047.2	0.817
MA0048.1	MA0048.1	0.0236
MA0050.1	MA0050.1	2.76139e-8
MA0051.1	MA0051.1	0.0032
MA0052.1	MA0052.1	0.499
MA0055.1	MA0055.1	0.262
MA0057.1	MA0057.1	0.695
MA0058.1	MA0058.1	0.321
MA0059.1	MA0059.1	0.554
MA0060.1	MA0060.1	9.39292e-9
MA0061.1	MA0061.1	0.00238
MA0062.2	MA0062.2	0.893
MA0065.2	MA0065.2	0.773
MA0066.1	MA0066.1	0.246
MA0067.1	MA0067.1	0.00205
MA0068.1	MA0068.1	0.925
MA0069.1	MA0069.1	0.714
MA0070.1	MA0070.1	0.28
MA0071.1	MA0071.1	0.623
MA0072.1	MA0072.1	0.375
MA0073.1	MA0073.1	0.922
MA0074.1	MA0074.1	0.715
MA0076.1	MA0076.1	0.142
MA0077.1	MA0077.1	0.932
MA0078.1	MA0078.1	0.815
MA0079.2	MA0079.2	0.0328
MA0080.2	MA0080.2	0.00195
MA0081.1	MA0081.1	0.921
MA0083.1	MA0083.1	0.0139
MA0084.1	MA0084.1	0.0403
MA0087.1	MA0087.1	0.48
MA0088.1	MA0088.1	0.00424
MA0090.1	MA0090.1	0.00374
MA0091.1	MA0091.1	0.715
MA0092.1	MA0092.1	0.975
MA0093.1	MA0093.1	0.538
MA0099.2	MA0099.2	1.57755e-5
MA0100.1	MA0100.1	0.0138
MA0101.1	MA0101.1	0.00752
MA0102.2	MA0102.2	4.43263e-4
MA0103.1	MA0103.1	1.34118e-5
MA0104.2	MA0104.2	0.766
MA0105.1	MA0105.1	0.393
MA0106.1	MA0106.1	0.44
MA0107.1	MA0107.1	2.24772e-4
MA0108.2	MA0108.2	0.718
MA0111.1	MA0111.1	0.549
MA0112.2	MA0112.2	0.931
MA0113.1	MA0113.1	0.954
MA0114.1	MA0114.1	0.548
MA0115.1	MA0115.1	0.705
MA0116.1	MA0116.1	0.204
MA0117.1	MA0117.1	0.91
MA0119.1	MA0119.1	0.362
MA0122.1	MA0122.1	0.686
MA0124.1	MA0124.1	0.274
MA0125.1	MA0125.1	0.878
MA0131.1	MA0131.1	0.678
MA0135.1	MA0135.1	0.238
MA0136.1	MA0136.1	0.0528
MA0137.2	MA0137.2	0.385
MA0138.2	MA0138.2	0.116
MA0139.1	MA0139.1	0.832
MA0140.1	MA0140.1	0.816
MA0141.1	MA0141.1	0.797
MA0142.1	MA0142.1	0.459
MA0143.1	MA0143.1	0.928
MA0144.1	MA0144.1	0.588
MA0145.1	MA0145.1	0.71
MA0146.1	MA0146.1	0.598
MA0147.1	MA0147.1	0.515
MA0148.1	MA0148.1	0.507
MA0149.1	MA0149.1	0.593
MA0150.1	MA0150.1	0.259
MA0152.1	MA0152.1	0.0331
MA0153.1	MA0153.1	0.298
MA0154.1	MA0154.1	0.634
MA0155.1	MA0155.1	0.686
MA0156.1	MA0156.1	0.932
MA0157.1	MA0157.1	0.569
MA0159.1	MA0159.1	0.263
MA0160.1	MA0160.1	0.074
MA0162.1	MA0162.1	0.0469
MA0163.1	MA0163.1	0.222
MA0164.1	MA0164.1	0.663
MA0258.1	MA0258.1	0.0831
MA0259.1	MA0259.1	0.0638

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12731

Novel motif	Logo	P-value
1	1	0.996
10	10	0.565
100	100	0.938
101	101	0.757
102	102	0.206
103	103	0.885
104	104	0.669
105	105	0.681
106	106	0.169
107	107	0.302
108	108	0.348
109	109	0.151
11	11	0.868
110	110	0.202
111	111	0.682
112	112	0.205
113	113	0.0348
114	114	0.993
115	115	0.663
116	116	0.487
117	117	0.575
118	118	0.219
119	119	0.535
12	12	0.354
120	120	0.147
121	121	0.53
122	122	0.498
123	123	7.60717e-4
124	124	0.949
125	125	0.323
126	126	0.391
127	127	0.329
128	128	0.254
129	129	0.824
13	13	0.241
130	130	0.00788
131	131	0.818
132	132	0.641
133	133	0.99
134	134	0.277
135	135	0.326
136	136	0.158
137	137	0.207
138	138	0.452
139	139	4.93403e-4
14	14	0.0515
140	140	0.361
141	141	0.831
142	142	0.476
143	143	0.257
144	144	0.497
145	145	0.871
146	146	0.147
147	147	0.275
148	148	0.806
149	149	0.954
15	15	0.886
150	150	0.284
151	151	0.134
152	152	0.25
153	153	0.814
154	154	0.253
155	155	0.0754
156	156	0.62
157	157	0.0716
158	158	0.0107
159	159	0.251
16	16	0.436
160	160	0.0842
161	161	0.55
162	162	0.424
163	163	0.97
164	164	0.158
165	165	0.46
166	166	0.937
167	167	0.289
168	168	0.443
169	169	0.148
17	17	0.845
18	18	0.493
19	19	0.236
2	2	0.981
20	20	0.39
21	21	0.0766
22	22	0.411
23	23	0.191
24	24	0.0315
25	25	0.862
26	26	0.643
27	27	0.451
28	28	0.323
29	29	0.757
3	3	0.764
30	30	0.496
31	31	0.37
32	32	0.351
33	33	0.155
34	34	0.893
35	35	0.164
36	36	0.156
37	37	0.966
38	38	0.735
39	39	0.491
4	4	0.466
40	40	0.644
41	41	0.462
42	42	0.405
43	43	0.42
44	44	0.831
45	45	0.346
46	46	0.915
47	47	0.319
48	48	0.61
49	49	0.181
5	5	0.63
50	50	0.616
51	51	0.912
52	52	0.112
53	53	0.119
54	54	0.766
55	55	0.589
56	56	0.939
57	57	0.739
58	58	0.127
59	59	0.286
6	6	0.948
60	60	0.0554
61	61	0.83
62	62	0.426
63	63	0.499
64	64	0.743
65	65	0.365
66	66	0.011
67	67	0.759
68	68	0.528
69	69	0.607
7	7	0.942
70	70	0.00891
71	71	0.72
72	72	0.55
73	73	0.908
74	74	0.638
75	75	0.93
76	76	0.481
77	77	0.952
78	78	0.754
79	79	0.84
8	8	0.359
80	80	0.798
81	81	0.321
82	82	0.017
83	83	0.21
84	84	0.208
85	85	0.0551
86	86	0.161
87	87	0.0521
88	88	0.64
89	89	0.905
9	9	0.368
90	90	0.748
91	91	0.761
92	92	0.0565
93	93	0.554
94	94	0.745
95	95	0.0954
96	96	0.606
97	97	0.289
98	98	0.778
99	99	0.00106

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12731

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000091 human leptomeningeal cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000151 (secretory cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000499 (stromal cell)
0000327 (extracellular matrix secreting cell)
0000255 (eukaryotic cell)
0000708 (leptomeningeal cell)

UBERON: Anatomy
0002384 (connective tissue)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)
0000119 (cell layer)
0003210 (blood-cerebrospinal fluid barrier)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000091 (human leptomeningeal cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00004675
+|accession_numbers=CAGE;DRX008343;DRR009215;DRZ000640;DRZ002025;DRZ011990;DRZ013375
 |ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062,UBERON:0000119,UBERON:0003210
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000723,CL:0000048,CL:0000548,CL:0000034,CL:0000151,CL:0000012,CL:0002320,CL:0000063,CL:0002371,CL:0000219,CL:0000499,CL:0000327,CL:0000004,CL:0000134,CL:0000255,CL:0000708
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000151,CL:0002320,CL:0002371,CL:0000499,CL:0000327,CL:0000255,CL:0000708
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000091
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr3:147127142..147127168,+!p1@ZIC1!2.12!129.81!ZIC1;;chr3:147127177..147127194,+!p2@ZIC1!1.88!75.17!ZIC1;;chr4:4861385..4861398,+!p1@MSX1!1.82!186.43!MSX1;;chr14:61116183..61116208,-!p1@SIX1!1.74!196.99!SIX1;;chr6:34204921..34204939,+!p3@HMGA1!1.68!1337.54!HMGA1;;chr12:66218598..66218645,+!p2@HMGA2!1.64!187.16!HMGA2;;chr6:85474299..85474324,-!p1@TBX18!1.62!71.43!TBX18;;chr12:66218255..66218304,+!p3@HMGA2!1.57!94.09!HMGA2;;chr1:170633348..170633399,+!p2@PRRX1!1.47!38.65!PRRX1;;chr2:19558373..19558392,-!p1@OSR1!1.39!62.78!OSR1;;chr16:86600426..86600441,+!p1@FOXC2!1.39!56.62!FOXC2;;chr12:66218183..66218209,+!p4@HMGA2!1.37!42.83!HMGA2;;chr15:57511609..57511651,+!p2@TCF12!1.37!37.04!TCF12;;chr5:92918919..92918942,+!p1@NR2F1!1.34!90.79!NR2F1;;chr5:72744594..72744609,-!p1@FOXD1!1.31!86.03!FOXD1;;chr1:170632285..170632309,+!p1@PRRX1!1.30!21.41!PRRX1;;chr15:80843484..80843499,+!p5@ARNT2!1.28!17.89!ARNT2;;chr3:147111231..147111281,+!p3@ZIC1!1.28!17.89!ZIC1;;chr12:66218212..66218244,+!p5@HMGA2!1.23!23.10!HMGA2;;chr1:170633262..170633285,+!p3@PRRX1!1.20!17.01!PRRX1;;chr7:19157248..19157268,-!p1@TWIST1!1.16!37.04!TWIST1;;chr13:100634031..100634045,+!p1@ZIC2!1.16!13.49!ZIC2;;chr12:96588368..96588394,+!p3@ELK3!1.09!30.22!ELK3;;chr6:1389789..1389821,+!p1@FOXF2!1.08!15.11!FOXF2;;chr3:25469724..25469773,+!p1@RARB!1.07!15.47!RARB;;chr12:85673977..85674015,+!p1@ALX1!1.07!10.71!ALX1;;chr11:65667884..65667895,-!p2@FOSL1!1.06!41.29!FOSL1;;chr12:66218573..66218596,+!p7@HMGA2!1.05!15.47!HMGA2;;chr17:1959369..1959388,+!p2@HIC1!1.04!26.84!HIC1;;chr3:147124307..147124336,-!p2@ZIC4!1.02!9.39!ZIC4;;chr1:170632959..170632987,+!p4@PRRX1!1.00!10.05!PRRX1;;chr2:45236540..45236577,-!p1@SIX2!1.00!9.02!SIX2;;chr5:72744562..72744573,-!p3@FOXD1!0.99!11.07!FOXD1;;chr12:66218836..66218888,+!p1@HMGA2!0.97!80.01!HMGA2;;chr17:41622765..41622821,-!p2@ETV4!0.97!13.05!ETV4;;chr6:34204973..34204990,+!p4@HMGA1!0.96!110.45!HMGA1;;chr5:92918768..92918783,+!p8@NR2F1!0.96!8.07!NR2F1;;chr5:72744445..72744466,-!p2@FOXD1!0.95!13.35!FOXD1;;chr12:66218378..66218401,+!p6@HMGA2!0.92!11.66!HMGA2;;chr15:96873984..96873999,+!p3@NR2F2!0.90!53.46!NR2F2;;chr17:41623692..41623715,-!p1@ETV4!0.90!31.32!ETV4;;chr12:66218152..66218174,+!p10@HMGA2!0.89!7.33!HMGA2;;chr1:170632250..170632277,+!p7@PRRX1!0.89!6.75!PRRX1;;chr20:30433396..30433414,-!p1@FOXS1!0.89!6.67!FOXS1;;chr14:61116168..61116180,-!p2@SIX1!0.87!7.48!SIX1;;chr15:57511589..57511608,+!p4@TCF12!0.86!6.31!TCF12;;chr17:41622925..41622976,-!p3@ETV4!0.85!9.31!ETV4;;chr12:66218443..66218461,+!p8@HMGA2!0.85!7.99!HMGA2;;chr11:44331576..44331650,-!p1@ALX4!0.85!6.09!ALX4;;chr2:5832508..5832524,+!p1@SOX11!0.85!6.01!SOX11;;chr1:170632477..170632506,+!p6@PRRX1!0.84!5.87!PRRX1;;chr6:31126291..31126399,+!p1@TCF19!0.83!59.11!TCF19;;chr12:96588279..96588299,+!p4@ELK3!0.83!28.90!ELK3;;chr15:96869255..96869291,+!p6@NR2F2!0.83!11.00!NR2F2;;chr8:49833948..49833973,-!p2@SNAI2!0.82!37.92!SNAI2;;chr15:96873921..96873946,+!p1@NR2F2!0.81!168.09!NR2F2;;chr5:92919100..92919135,+!p3@NR2F1!0.81!6.75!NR2F1;;chr1:151032860..151032918,+!p1@MLLT11!0.80!67.84!MLLT11;;chr3:141087393..141087426,+!p3@ZBTB38!0.80!22.44!ZBTB38;;chr7:14029283..14029311,-!p1@ETV1!0.79!29.92!ETV1;;chr5:92918894..92918912,+!p2@NR2F1!0.79!18.11!NR2F1;;chr15:96869114..96869160,+!p11@NR2F2!0.79!7.33!NR2F2;;chr20:55204351..55204377,+!p1@TFAP2C!0.79!6.67!TFAP2C;;chr17:41622731..41622764,-!p5@ETV4!0.79!5.13!ETV4;;chr15:96873861..96873872,+!p9@NR2F2!0.78!11.07!NR2F2;;chr12:66218420..66218439,+!p12@HMGA2!0.78!5.06!HMGA2;;chr20:42295713..42295738,+!p2@MYBL2!0.77!31.90!MYBL2;;chr3:147139053..147139112,+!p5@ZIC1!0.77!4.91!ZIC1;;chr3:25469815..25469866,+!p3@RARB!0.77!4.84!RARB;;chr13:100623375..100623425,-!p1@ZIC5!0.77!4.84!ZIC5;;chr9:130954041..130954121,-!p2@CIZ1!0.76!22.44!CIZ1;;chr12:96588219..96588263,+!p2@ELK3!0.75!36.74!ELK3;;chr12:66218003..66218018,+!p9@HMGA2!0.75!5.79!HMGA2;;chr5:92918860..92918871,+!p10@NR2F1!0.75!5.13!NR2F1;;chr8:25902876..25902936,-!p1@EBF2!0.75!4.62!EBF2;;chr8:49833978..49833996,-!p1@SNAI2!0.74!102.75!SNAI2;;chr6:85473156..85473210,-!p2@TBX18!0.74!5.57!TBX18;;chr19:46801639..46801699,+!p1@HIF3A!0.74!4.55!HIF3A;;chr11:65667846..65667868,-!p1@FOSL1!0.73!130.47!FOSL1;;chr14:55493763..55493824,-!p1@WDHD1!0.73!36.96!WDHD1;;chr8:77593474..77593612,+!p1@ZFHX4!0.73!20.61!ZFHX4;;chr19:22817119..22817145,+!p1@ZNF492!0.73!7.77!ZNF492;;chr5:92918956..92918969,+!p4@NR2F1!0.73!4.91!NR2F1;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.73!4.69!GLIS1;;chr1:170633058..170633084,+!p5@PRRX1!0.73!4.33!PRRX1;;chr9:16705069..16705086,-!p3@BNC2!0.73!4.33!BNC2;;chr10:35484804..35484902,+!p2@CREM!0.72!18.04!CREM;;chr12:66218469..66218477,+!p16@HMGA2!0.72!4.25!HMGA2;;chr1:47779762..47779827,-!p1@STIL,p1@TAL1!0.71!21.12!TAL1;;chr15:96869222..96869251,+!p18@NR2F2!0.71!4.91!NR2F2;;chr5:92920456..92920488,+!p9@NR2F1!0.71!4.91!NR2F1;;chr4:299227..299272,-!p1@ZNF732!0.71!4.18!ZNF732;;chrY:2803415..2803468,+!p1@ZFY!0.71!4.11!ZFY;;chr13:100634004..1006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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000151;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000327;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000499;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000708
+|ffid_belonging_in_development=CL:0000134
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 35: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Meningeal%2520Cells%252c%2520donor3.CNhs12731.11654-122E7.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Meningeal%2520Cells%252c%2520donor3.CNhs12731.11654-122E7.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Meningeal%2520Cells%252c%2520donor3.CNhs12731.11654-122E7.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Meningeal%2520Cells%252c%2520donor3.CNhs12731.11654-122E7.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Meningeal%2520Cells%252c%2520donor3.CNhs12731.11654-122E7.hg38.nobarcode.ctss.bed.gz
 |id=FF:11654-122E7
 |is_a=EFO:0002091;;FF:0000091
 |is_obsolete=
+|library_id=CNhs12731
+|library_id_phase_based=2:CNhs12731
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11654
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11654
 |name=Meningeal Cells, donor3
 |namespace=FANTOM5
@@ Line 43: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12731,LSID960,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_catalog_number=SC1405
@@ Line 55: / Line 76: @@
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 |sample_cell_line=
@@ Line 79: / Line 101: @@
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11654-122E7;search_select_hide=table117:FF:11654-122E7
 }}

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FF:11654-122E7: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 18:13, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0