FFCP PHASE1:Hg19::chr19:55946950..55946958,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr19:55946950..55946958,-
|short_description=p@chr19:55946950..55946958,-
|description=CAGE_peak_at_chr19:55946950..55946958,-
|association_with_transcript=NA
...") |
No edit summary |
||
(12 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr19:55946950..55946958,- | |||
|coexpression_cluster_id=C1179 | |||
|description=CAGE_peak_at_chr19:55946950..55946958,- | |||
|id=chr19:55946950..55946958,- | |||
|ontology_enrichment_celltype=CL:0000764!6.32e-08!2;CL:0000765!6.32e-08!2;CL:0000050!6.32e-08!2;CL:0000038!6.32e-08!2;CL:0000558!6.32e-08!2;CL:0000547!6.32e-08!2;CL:0000549!6.32e-08!2;CL:0000550!6.32e-08!2;CL:0000552!6.32e-08!2 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0010122;1.57e-09;2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!2.64e-78!57;UBERON:0005068!2.64e-78!57;UBERON:0006241!2.64e-78!57;UBERON:0007135!2.64e-78!57;UBERON:0002616!3.54e-63!59;UBERON:0002346!2.26e-60!90;UBERON:0000955!1.75e-58!69;UBERON:0006238!1.75e-58!69;UBERON:0003075!1.61e-57!86;UBERON:0007284!1.61e-57!86;UBERON:0002020!2.64e-57!34;UBERON:0003528!2.64e-57!34;UBERON:0001017!5.03e-57!82;UBERON:0005743!6.97e-57!86;UBERON:0002780!6.19e-55!41;UBERON:0001890!6.19e-55!41;UBERON:0006240!6.19e-55!41;UBERON:0002791!3.11e-54!33;UBERON:0003080!1.74e-53!42;UBERON:0001893!1.70e-52!34;UBERON:0000073!1.17e-50!94;UBERON:0001016!1.17e-50!94;UBERON:0001869!1.36e-46!32;UBERON:0003056!1.96e-40!61;UBERON:0002619!2.82e-40!22;UBERON:0007023!6.72e-39!115;UBERON:0000956!4.13e-35!25;UBERON:0000203!4.13e-35!25;UBERON:0001950!2.54e-34!20;UBERON:0000033!5.40e-33!123;UBERON:0000153!4.93e-31!129;UBERON:0007811!4.93e-31!129;UBERON:0000924!1.07e-27!173;UBERON:0006601!1.07e-27!173;UBERON:0004121!1.44e-25!169;UBERON:0003076!4.52e-25!15;UBERON:0003057!4.52e-25!15;UBERON:0002308!1.06e-24!9;UBERON:0000125!1.06e-24!9;UBERON:0002298!5.18e-20!8;UBERON:0002420!3.45e-19!9;UBERON:0007245!3.45e-19!9;UBERON:0010009!3.45e-19!9;UBERON:0010011!3.45e-19!9;UBERON:0000454!3.45e-19!9;UBERON:0009663!2.28e-18!7;UBERON:0000025!1.06e-17!194;UBERON:0004733!9.06e-17!12;UBERON:0002028!9.06e-17!12;UBERON:0007277!9.06e-17!12;UBERON:0004732!2.25e-15!13;UBERON:0000369!8.19e-15!4;UBERON:0002435!8.19e-15!4;UBERON:0000204!8.19e-15!4;UBERON:0010082!8.19e-15!4;UBERON:0004111!2.59e-13!241;UBERON:0005383!5.52e-12!3;UBERON:0005382!5.52e-12!3;UBERON:0002771!6.60e-12!3;UBERON:0001872!1.12e-11!5;UBERON:0000349!1.56e-11!5;UBERON:0006331!1.66e-11!3;UBERON:0000064!1.96e-11!219;UBERON:0000477!2.39e-11!286;UBERON:0001871!2.75e-11!7;UBERON:0002021!2.83e-11!5;UBERON:0000483!3.38e-11!309;UBERON:0000119!5.42e-11!312;UBERON:0002240!6.17e-11!3;UBERON:0000988!8.67e-11!3;UBERON:0001896!1.30e-10!3;UBERON:0005290!1.30e-10!3;UBERON:0010096!1.30e-10!3;UBERON:0000200!5.11e-10!6;UBERON:0002680!2.80e-09!9;UBERON:0001895!2.80e-09!9;UBERON:0010092!2.80e-09!9;UBERON:0000475!2.96e-09!365;UBERON:0001897!1.90e-08!2;UBERON:0001873!1.90e-08!2;UBERON:0010122!1.90e-08!2;UBERON:0002148!3.88e-08!2;UBERON:0009662!3.88e-08!2;UBERON:0001954!4.16e-08!2;UBERON:0003022!4.16e-08!2;UBERON:0002421!4.16e-08!2;UBERON:0002600!4.16e-08!2 | |||
|ontology_enrichment_uberon_v019=UBERON:0002420;1.37e-45;9!UBERON:0007245;1.37e-45;9!UBERON:0010009;1.37e-45;9!UBERON:0010011;1.37e-45;9!UBERON:0000454;1.37e-45;9!UBERON:0009663;6.61e-38;7!UBERON:0002791;2.14e-32;32!UBERON:0001893;4.17e-30;34!UBERON:0000125;1.33e-29;9!UBERON:0002308;1.33e-29;9!UBERON:0003528;1.03e-28;34!UBERON:0002020;1.03e-28;34!UBERON:0002780;7.12e-27;41!UBERON:0001890;7.12e-27;41!UBERON:0001869;1.32e-24;32!UBERON:0005383;3.68e-23;3!UBERON:0005382;3.68e-23;3!UBERON:0000073;2.18e-22;53!UBERON:0002616;2.18e-22;53!UBERON:0001950;1.01e-19;20!UBERON:0001874;2.66e-18;1!UBERON:0002619;5.07e-18;22!UBERON:0002038;1.03e-17;1!UBERON:0003112;1.03e-17;1!UBERON:0011158;1.03e-17;1!UBERON:0009661;1.03e-17;1!UBERON:0002950;1.03e-17;1!UBERON:0003128;1.03e-17;1!UBERON:0001891;1.03e-17;1!UBERON:0001703;1.03e-17;1!UBERON:0002241;1.03e-17;1!UBERON:0000369;1.22e-17;4!UBERON:0002435;1.22e-17;4!UBERON:0000204;1.22e-17;4!UBERON:0000956;5.89e-16;25!UBERON:0000203;5.89e-16;25!UBERON:0000200;4.94e-12;6!UBERON:0000955;2.84e-11;68!UBERON:0001017;9.89e-11;75!UBERON:0001016;1.80e-10;83!UBERON:0001871;2.46e-10;6!UBERON:0001897;9.87e-10;2!UBERON:0002702;9.87e-10;2!UBERON:0010225;9.87e-10;2!UBERON:0002771;1.57e-09;2!UBERON:0001876;1.57e-09;2!UBERON:0001873;1.57e-09;2!UBERON:0001875;1.57e-09;2!UBERON:0006514;1.57e-09;2!UBERON:0001870;6.69e-07;3!UBERON:0002114;6.69e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002420,1.14e-45,9;UBERON:0007245,1.14e-45,9;UBERON:0010009,1.14e-45,9;UBERON:0010011,1.14e-45,9;UBERON:0000454,1.14e-45,9;UBERON:0002791,1.06e-39,32;UBERON:0002780,1.89e-38,41;UBERON:0001890,1.89e-38,41;UBERON:0003080,1.89e-38,41;UBERON:0006240,1.89e-38,41;UBERON:0009663,7.28e-38,7;UBERON:0003528,2.10e-37,34;UBERON:0002020,2.10e-37,34;UBERON:0001893,2.10e-37,34;UBERON:0001869,1.72e-31,32;UBERON:0000073,8.91e-30,53;UBERON:0002616,8.91e-30,53;UBERON:0000125,1.43e-29,9;UBERON:0002308,1.43e-29,9;UBERON:0001049,3.54e-28,56;UBERON:0005068,3.54e-28,56;UBERON:0006241,3.54e-28,56;UBERON:0007135,3.54e-28,56;UBERON:0003056,7.46e-26,61;UBERON:0005383,2.94e-23,3;UBERON:0005382,2.94e-23,3;UBERON:0000955,7.99e-23,68;UBERON:0006238,7.99e-23,68;UBERON:0001950,9.31e-20,20;UBERON:0001017,3.85e-19,81;UBERON:0003075,3.85e-19,82;UBERON:0007284,3.85e-19,82;UBERON:0001874,2.66e-18,1;UBERON:0002346,3.16e-18,86;UBERON:0002619,4.72e-18,22;UBERON:0000369,1.03e-17,4;UBERON:0002435,1.03e-17,4;UBERON:0000204,1.03e-17,4;UBERON:0010082,1.03e-17,4;UBERON:0003112,1.44e-17,1;UBERON:0011158,1.44e-17,1;UBERON:0003128,1.44e-17,1;UBERON:0001703,1.44e-17,1;UBERON:0002241,1.44e-17,1;UBERON:0004761,1.44e-17,1;UBERON:0009617,1.44e-17,1;UBERON:0002038,1.70e-17,1;UBERON:0009661,1.70e-17,1;UBERON:0002950,1.70e-17,1;UBERON:0001891,1.70e-17,1;UBERON:0009616,1.70e-17,1;UBERON:0010286,1.70e-17,1;UBERON:0001016,3.38e-17,89;UBERON:0000956,5.53e-16,25;UBERON:0000203,5.53e-16,25;UBERON:0010371,5.66e-15,104;UBERON:0010314,3.53e-14,132;UBERON:0000200,5.68e-12,6;UBERON:0007023,5.15e-11,114;UBERON:0001871,2.24e-10,6;UBERON:0001897,1.03e-09,2;UBERON:0010225,1.03e-09,2;UBERON:0002702,1.12e-09,2;UBERON:0001876,1.22e-09,2;UBERON:0011216,1.33e-09,223;UBERON:0001873,1.33e-09,2;UBERON:0010122,1.33e-09,2;UBERON:0001875,1.57e-09,2;UBERON:0006514,1.57e-09,2;UBERON:0002771,1.71e-09,2;UBERON:0005253,1.86e-09,2;UBERON:0004121,1.07e-08,171;UBERON:0000924,1.07e-08,171;UBERON:0006601,1.07e-08,171;UBERON:0000025,9.48e-08,192;UBERON:0002114,6.14e-07,2;UBERON:0001870,7.28e-07,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0.571994910780128,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.877039506583738,0.261435451024901,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201799707191048,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121360521749513,0,0,0,0,0,0,1.96937182974718,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.371072392647405,0,0,0,0,0,0,0,0.344743373241465,0.874813840149763,0,0.885741385813839,1.92954301800653,0,0.552896299656123,0.591095237907095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.67401132980677,0,0.234264445725339,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225980740780532,0,0,0.696418755514666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.64286454670392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.795229689809303,0.681017030557878,0,0,0,0,0,0.182248669974074,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.775697738169303,0.79339561045614,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.976210119215705,2.003054891304,0.573409195690071,0.554645257684261,0.124192805882767,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192914038270915,0,0,0,0,1.38258436151731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123935764259002,0,0,0.0788617450012534,0,0,0,0.192687675289379,0,1.75597244962866,0.41023272848151,0.756215088665154,0.138314504928436,1.29180516505481,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.781078098613847,0,0.443910671357348,2.18789923607288,0,0,0.175871244359621,0,0,0,0,0,0,0,0,0.0679697329768317,0.591954962065642,0.118193840883968,0,0,3.61365856806804,0,0,0,0,0.142953088353313,0.158013611732727,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.397901550322736,0,0,0,0,0,0,0,0,0,0.196308467114945,0.891139200981258,0.4226557275834,0,0,0,0,0,0,0,0,0,1.14671666521161,0.157771562193185,0.339957450954573,2.61810414204226,0,0,0,0,0,0,0,0,0,0,0,0,0,0.829169439458779,2.1720929130998,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0.571994910780128,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.877039506583738,0.261435451024901,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201799707191048,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121360521749513,0,0,0,0,0,0,1.96937182974718,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.371072392647405,0,0,0,0,0,0,0,0.344743373241465,0.874813840149763,0,0.885741385813839,1.92954301800653,0,0.552896299656123,0.591095237907095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.67401132980677,0,0.234264445725339,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225980740780532,0,0,0.696418755514666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.64286454670392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.795229689809303,0.681017030557878,0,0,0,0,0,0.182248669974074,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.775697738169303,0.79339561045614,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.976210119215705,2.003054891304,0.573409195690071,0.554645257684261,0.124192805882767,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192914038270915,0,0,0,0,1.38258436151731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123935764259002,0,0,0.0788617450012534,0,0,0,0.192687675289379,0,1.75597244962866,0.41023272848151,0.756215088665154,0.138314504928436,1.29180516505481,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.781078098613847,0,0.443910671357348,2.18789923607288,0,0,0.175871244359621,0,0,0,0,0,0,0,0,0.0679697329768317,0.591954962065642,0.118193840883968,0,0,3.61365856806804,0,0,0,0,0.142953088353313,0.158013611732727,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.397901550322736,0,0,0,0,0,0,0,0,0,0.196308467114945,0.891139200981258,0.4226557275834,0,0,0,0,0,0,0,0,0,1.14671666521161,0.157771562193185,0.339957450954573,2.61810414204226,0,0,0,0,0,0,0,0,0,0,0,0,0,0.829169439458779,2.1720929130998,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr19:55946950..55946958,- | |||
}} | }} |
Latest revision as of 17:29, 27 July 2015
Short description: | p@chr19:55946950..55946958, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr19:55946950..55946958, - |
Coexpression cluster: | C1179_parietal_putamen_occipital_medial_caudate_hippocampus_amygdala |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data