FF:10153-102I9: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023 | |DRA_sample_Accession=CAGE@SAMD00005074 | ||
|HumanCAGEScanFiles=NCig10025;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/hippocampus%252c%2520adult%252c%2520donor10252.NCig10025.10153-102I9.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/hippocampus%252c%2520adult%252c%2520donor10252.NCig10025.10153-102I9.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/hippocampus%252c%2520adult%252c%2520donor10252.NCig10025.10153-102I9.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/hippocampus%252c%2520adult%252c%2520donor10252.NCig10025.10153-102I9.hg19.GCTATA.pairs.bed.gz | |||
|accession_numbers=CAGE;DRX008668;DRR009540;DRZ000965;DRZ002350;DRZ012315;DRZ013700 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0001954,UBERON:0000956,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0003528,UBERON:0002791,UBERON:0000467,UBERON:0002619,UBERON:0001062,UBERON:0000480,UBERON:0002616,UBERON:0002780,UBERON:0002020,UBERON:0003022,UBERON:0010317,UBERON:0001017,UBERON:0002421,UBERON:0001016,UBERON:0001869,UBERON:0001893,UBERON:0001890,UBERON:0000203,UBERON:0000349,UBERON:0002600 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010153 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr7:100065686..100065701,-!p2@TSC22D4!2.60!398.12!TSC22D4;;chr21:34442439..34442455,+!p1@OLIG1!2.45!279.08!OLIG1;;chr22:38380543..38380569,-!p1@SOX10!2.24!174.75!SOX10;;chr3:181429704..181429722,+!p1@SOX2!2.23!166.99!SOX2;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.99!96.70!PEG3;;chr11:61520075..61520136,+!p1@C11orf9!1.88!154.86!C11orf9;;chr21:34398234..34398250,+!p1@OLIG2!1.88!75.73!OLIG2;;chr19:46801639..46801699,+!p1@HIF3A!1.88!74.09!HIF3A;;chr14:29235961..29236008,+!p1@FOXG1!1.84!68.78!FOXG1;;chr17:37764128..37764258,-!p1@NEUROD2!1.79!60.61!NEUROD2;;chr4:81118647..81118666,+!p1@PRDM8!1.76!73.69!PRDM8;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.76!57.07!POU3F3;;chr12:106976678..106976708,+!p2@RFX4!1.75!55.03!RFX4;;chr3:181429741..181429767,+!p2@SOX2!1.74!53.53!SOX2;;chr12:26277817..26277863,-!p2@BHLHE41!1.73!70.14!BHLHE41;;chr15:80733570..80733659,+!p2@ARNT2!1.73!53.12!ARNT2;;chr21:34442540..34442560,+!p2@OLIG1!1.73!52.17!OLIG1;;chr2:145277882..145277967,-!p3@ZEB2!1.72!86.90!ZEB2;;chr17:53342311..53342400,+!p1@HLF!1.70!55.84!HLF;;chr19:46800289..46800327,+!p2@HIF3A!1.68!46.72!HIF3A;;chr12:54779511..54779577,-!p5@ZNF385A!1.67!45.90!ZNF385A;;chr16:1031762..1031781,+!p1@SOX8!1.66!44.54!SOX8;;chr11:113930425..113930471,+!p1@ZBTB16!1.64!60.47!ZBTB16;;chr9:77112244..77112262,+!p1@RORB!1.63!46.58!RORB;;chr9:126774018..126774055,+!p1@LHX2!1.63!41.68!LHX2;;chr2:95963052..95963106,+!p1@KCNIP3!1.63!41.54!KCNIP3;;chr12:26277956..26277980,-!p1@BHLHE41!1.61!137.43!BHLHE41;;chr8:53322304..53322340,-!p1@ST18!1.61!40.18!ST18;;chr10:134599649..134599653,-!p1@NKX6-2!1.61!39.77!NKX6-2;;chr14:29234581..29234601,+!p2@FOXG1!1.61!39.50!FOXG1;;chr9:114287433..114287513,+!p1@ZNF483!1.59!94.53!ZNF483;;chr15:80696703..80696754,+!p1@ARNT2!1.59!49.58!ARNT2;;chr11:31832862..31832884,-!p2@PAX6!1.59!37.59!PAX6;;chr6:19837592..19837621,+!p1@ID4!1.58!216.15!ID4;;chr10:119302232..119302265,+!p1@EMX2!1.57!36.37!EMX2;;chr10:48355030..48355090,+!p1@ZNF488!1.56!45.36!ZNF488;;chr14:33403881..33403924,+!p1@NPAS3!1.56!35.00!NPAS3;;chr2:60781201..60781258,-!p3@BCL11A!1.54!33.51!BCL11A;;chr4:57547454..57547469,-!p1@HOPX!1.53!32.96!HOPX;;chr7:31380292..31380351,-!p1@NEUROD6!1.53!32.55!NEUROD6;;chr2:2334997..2335053,-!p1@MYT1L!1.49!30.10!MYT1L;;chr12:106976774..106976788,+!p1@RFX4!1.49!29.56!RFX4;;chr1:61548069..61548102,+!p3@NFIA!1.47!68.24!NFIA;;chr3:126076242..126076257,-!p1@KLF15!1.47!35.41!KLF15;;chr17:70117153..70117174,+!p1@SOX9!1.45!265.32!SOX9;;chr2:166326200..166326216,+!p1@CSRNP3!1.45!39.23!CSRNP3;;chr11:8102846..8102892,+!p1@TUB!1.45!37.86!TUB;;chr14:29236269..29236285,+!p3@FOXG1!1.44!26.42!FOXG1;;chr16:85932760..85932775,+!p1@IRF8!1.43!25.74!IRF8;;chrX:25034067..25034088,-!p1@ARX!1.43!25.74!ARX;;chr1:244219775..244219893,+!p2@ZNF238!1.40!32.28!ZNF238;;chr1:2461692..2461710,-!p1@HES5!1.40!23.84!HES5;;chr14:33403648..33403710,+!p3@NPAS3!1.39!23.43!NPAS3;;chr8:53322347..53322378,-!p2@ST18!1.38!23.02!ST18;;chr17:7492684..7492778,-!p2@SOX15!1.37!46.99!SOX15;;chr1:214161272..214161322,+!p1@PROX1!1.36!30.51!PROX1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.36!21.93!ZBED1;;chr22:41763452..41763466,+!p2@TEF!1.35!21.25!TEF;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!1.33!20.29!SMARCE1;;chr10:64134120..64134183,+!p1@ZNF365!1.31!23.43!ZNF365;;chr19:13135582..13135600,+!p3@NFIX!1.31!19.48!NFIX;;chr16:51185318..51185348,-!p2@SALL1!1.30!19.07!SALL1;;chr17:38219209..38219230,+!p1@THRA!1.29!232.50!THRA;;chr11:47400078..47400106,-!p1@SPI1!1.28!18.12!SPI1;;chr11:31832658..31832681,-!p1@PAX6!1.27!17.57!PAX6;;chr16:79634624..79634642,-!p1@MAF!1.26!66.06!MAF;;chr12:103351444..103351461,+!p1@ASCL1!1.26!17.03!ASCL1;;chr7:63505799..63505904,+!p1@ZNF727!1.24!16.48!ZNF727;;chr3:114819124..114819200,-!p3@ZBTB20!1.23!37.05!ZBTB20;;chr6:143266185..143266238,-!p2@HIVEP2!1.23!21.79!HIVEP2;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.23!16.07!POU3F3;;chr19:13135386..13135435,+!p4@NFIX!1.22!15.66!NFIX;;chr9:126774058..126774081,+!p3@LHX2!1.22!15.66!LHX2;;chr2:162272785..162272836,+!p1@TBR1!1.21!15.12!TBR1;;chr3:114173720..114173794,-!p6@ZBTB20!1.20!14.98!ZBTB20;;chr8:65492915..65492932,+!p1@BHLHE22!1.20!14.71!BHLHE22;;chr15:80735246..80735321,+!p3@ARNT2!1.19!14.57!ARNT2;;chr13:100623375..100623425,-!p1@ZIC5!1.19!14.57!ZIC5;;chr8:30890810..30890880,-!p1@PURG!1.18!14.17!PURG;;chr6:126112039..126112062,+!p8@NCOA7!1.17!16.75!NCOA7;;chr14:33408072..33408114,+!p2@NPAS3!1.16!16.07!NPAS3;;chr2:60780607..60780624,-!p2@BCL11A!1.14!39.36!BCL11A;;chr11:31832807..31832823,-!p4@PAX6!1.14!12.80!PAX6;;chr12:24102576..24102623,-!p2@SOX5!1.14!12.80!SOX5;;chr9:14314946..14314983,-!p8@NFIB!1.14!12.80!NFIB;;chr14:22005197..22005261,-!p3@SALL2!1.14!12.67!SALL2;;chr1:167298300..167298319,+!p2@POU2F1!1.13!12.53!POU2F1;;chr21:39870339..39870443,-!p1@ERG!1.13!12.39!ERG;;chr8:40755333..40755352,-!p1@ZMAT4!1.13!12.39!ZMAT4;;chr13:100634031..100634045,+!p1@ZIC2!1.13!12.39!ZIC2;;chr12:24715376..24715432,-!p1@SOX5!1.12!15.39!SOX5;;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| |expression_enrichment_score=chr7:100065686..100065701,-!p2@TSC22D4!2.60!398.12!TSC22D4;;chr21:34442439..34442455,+!p1@OLIG1!2.45!279.08!OLIG1;;chr22:38380543..38380569,-!p1@SOX10!2.24!174.75!SOX10;;chr3:181429704..181429722,+!p1@SOX2!2.23!166.99!SOX2;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.99!96.70!PEG3;;chr11:61520075..61520136,+!p1@C11orf9!1.88!154.86!C11orf9;;chr21:34398234..34398250,+!p1@OLIG2!1.88!75.73!OLIG2;;chr19:46801639..46801699,+!p1@HIF3A!1.88!74.09!HIF3A;;chr14:29235961..29236008,+!p1@FOXG1!1.84!68.78!FOXG1;;chr17:37764128..37764258,-!p1@NEUROD2!1.79!60.61!NEUROD2;;chr4:81118647..81118666,+!p1@PRDM8!1.76!73.69!PRDM8;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.76!57.07!POU3F3;;chr12:106976678..106976708,+!p2@RFX4!1.75!55.03!RFX4;;chr3:181429741..181429767,+!p2@SOX2!1.74!53.53!SOX2;;chr12:26277817..26277863,-!p2@BHLHE41!1.73!70.14!BHLHE41;;chr15:80733570..80733659,+!p2@ARNT2!1.73!53.12!ARNT2;;chr21:34442540..34442560,+!p2@OLIG1!1.73!52.17!OLIG1;;chr2:145277882..145277967,-!p3@ZEB2!1.72!86.90!ZEB2;;chr17:53342311..53342400,+!p1@HLF!1.70!55.84!HLF;;chr19:46800289..46800327,+!p2@HIF3A!1.68!46.72!HIF3A;;chr12:54779511..54779577,-!p5@ZNF385A!1.67!45.90!ZNF385A;;chr16:1031762..1031781,+!p1@SOX8!1.66!44.54!SOX8;;chr11:113930425..113930471,+!p1@ZBTB16!1.64!60.47!ZBTB16;;chr9:77112244..77112262,+!p1@RORB!1.63!46.58!RORB;;chr9:126774018..126774055,+!p1@LHX2!1.63!41.68!LHX2;;chr2:95963052..95963106,+!p1@KCNIP3!1.63!41.54!KCNIP3;;chr12:26277956..26277980,-!p1@BHLHE41!1.61!137.43!BHLHE41;;chr8:53322304..53322340,-!p1@ST18!1.61!40.18!ST18;;chr10:134599649..134599653,-!p1@NKX6-2!1.61!39.77!NKX6-2;;chr14:29234581..29234601,+!p2@FOXG1!1.61!39.50!FOXG1;;chr9:114287433..114287513,+!p1@ZNF483!1.59!94.53!ZNF483;;chr15:80696703..80696754,+!p1@ARNT2!1.59!49.58!ARNT2;;chr11:31832862..31832884,-!p2@PAX6!1.59!37.59!PAX6;;chr6:19837592..19837621,+!p1@ID4!1.58!216.15!ID4;;chr10:119302232..119302265,+!p1@EMX2!1.57!36.37!EMX2;;chr10:48355030..48355090,+!p1@ZNF488!1.56!45.36!ZNF488;;chr14:33403881..33403924,+!p1@NPAS3!1.56!35.00!NPAS3;;chr2:60781201..60781258,-!p3@BCL11A!1.54!33.51!BCL11A;;chr4:57547454..57547469,-!p1@HOPX!1.53!32.96!HOPX;;chr7:31380292..31380351,-!p1@NEUROD6!1.53!32.55!NEUROD6;;chr2:2334997..2335053,-!p1@MYT1L!1.49!30.10!MYT1L;;chr12:106976774..106976788,+!p1@RFX4!1.49!29.56!RFX4;;chr1:61548069..61548102,+!p3@NFIA!1.47!68.24!NFIA;;chr3:126076242..126076257,-!p1@KLF15!1.47!35.41!KLF15;;chr17:70117153..70117174,+!p1@SOX9!1.45!265.32!SOX9;;chr2:166326200..166326216,+!p1@CSRNP3!1.45!39.23!CSRNP3;;chr11:8102846..8102892,+!p1@TUB!1.45!37.86!TUB;;chr14:29236269..29236285,+!p3@FOXG1!1.44!26.42!FOXG1;;chr16:85932760..85932775,+!p1@IRF8!1.43!25.74!IRF8;;chrX:25034067..25034088,-!p1@ARX!1.43!25.74!ARX;;chr1:244219775..244219893,+!p2@ZNF238!1.40!32.28!ZNF238;;chr1:2461692..2461710,-!p1@HES5!1.40!23.84!HES5;;chr14:33403648..33403710,+!p3@NPAS3!1.39!23.43!NPAS3;;chr8:53322347..53322378,-!p2@ST18!1.38!23.02!ST18;;chr17:7492684..7492778,-!p2@SOX15!1.37!46.99!SOX15;;chr1:214161272..214161322,+!p1@PROX1!1.36!30.51!PROX1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.36!21.93!ZBED1;;chr22:41763452..41763466,+!p2@TEF!1.35!21.25!TEF;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!1.33!20.29!SMARCE1;;chr10:64134120..64134183,+!p1@ZNF365!1.31!23.43!ZNF365;;chr19:13135582..13135600,+!p3@NFIX!1.31!19.48!NFIX;;chr16:51185318..51185348,-!p2@SALL1!1.30!19.07!SALL1;;chr17:38219209..38219230,+!p1@THRA!1.29!232.50!THRA;;chr11:47400078..47400106,-!p1@SPI1!1.28!18.12!SPI1;;chr11:31832658..31832681,-!p1@PAX6!1.27!17.57!PAX6;;chr16:79634624..79634642,-!p1@MAF!1.26!66.06!MAF;;chr12:103351444..103351461,+!p1@ASCL1!1.26!17.03!ASCL1;;chr7:63505799..63505904,+!p1@ZNF727!1.24!16.48!ZNF727;;chr3:114819124..114819200,-!p3@ZBTB20!1.23!37.05!ZBTB20;;chr6:143266185..143266238,-!p2@HIVEP2!1.23!21.79!HIVEP2;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.23!16.07!POU3F3;;chr19:13135386..13135435,+!p4@NFIX!1.22!15.66!NFIX;;chr9:126774058..126774081,+!p3@LHX2!1.22!15.66!LHX2;;chr2:162272785..162272836,+!p1@TBR1!1.21!15.12!TBR1;;chr3:114173720..114173794,-!p6@ZBTB20!1.20!14.98!ZBTB20;;chr8:65492915..65492932,+!p1@BHLHE22!1.20!14.71!BHLHE22;;chr15:80735246..80735321,+!p3@ARNT2!1.19!14.57!ARNT2;;chr13:100623375..100623425,-!p1@ZIC5!1.19!14.57!ZIC5;;chr8:30890810..30890880,-!p1@PURG!1.18!14.17!PURG;;chr6:126112039..126112062,+!p8@NCOA7!1.17!16.75!NCOA7;;chr14:33408072..33408114,+!p2@NPAS3!1.16!16.07!NPAS3;;chr2:60780607..60780624,-!p2@BCL11A!1.14!39.36!BCL11A;;chr11:31832807..31832823,-!p4@PAX6!1.14!12.80!PAX6;;chr12:24102576..24102623,-!p2@SOX5!1.14!12.80!SOX5;;chr9:14314946..14314983,-!p8@NFIB!1.14!12.80!NFIB;;chr14:22005197..22005261,-!p3@SALL2!1.14!12.67!SALL2;;chr1:167298300..167298319,+!p2@POU2F1!1.13!12.53!POU2F1;;chr21:39870339..39870443,-!p1@ERG!1.13!12.39!ERG;;chr8:40755333..40755352,-!p1@ZMAT4!1.13!12.39!ZMAT4;;chr13:100634031..100634045,+!p1@ZIC2!1.13!12.39!ZIC2;;chr12:24715376..24715432,-!p1@SOX5!1.12!15.39!SOX5;;chr11:31839488..31839515,-!p3@PAX6!1.12!12.12!PAX6;;chr3:126076264..126076305,-!p2@KLF15!1.11!16.62!KLF15;;chr9:126773880..126773895,+!p2@LHX2!1.11!11.99!LHX2;;chr2:95963120..95963136,+!p2@KCNIP3!1.11!11.85!KCNIP3;;chr12:26277929..26277955,-!p3@BHLHE41!1.10!16.48!BHLHE41;;chr6:126070769..126070801,+!p1@HEY2!1.10!13.21!HEY2;;chr5:71803177..71803255,-!p1@ZNF366!1.10!11.58!ZNF366;;chr5:88178983..88179012,-!p1@MEF2C!1.09!88.53!MEF2C;;chr8:106330656..106330684,+!p1@ZFPM2!1.09!29.96!ZFPM2;;chr15:42749722..42749739,-!p2@ZFP106!1.09!20.57!ZFP106;;chr11:113930291..113930339,+!p2@ZBTB16!1.09!18.66!ZBTB16;;chr5:92920256..92920282,+!p7@NR2F1!1.09!13.89!NR2F1;;chr14:58798013..58798071,+!p2@ARID4A!1.09!11.30!ARID4A;;chr13:95364784..95364806,-!p1@SOX21!1.09!11.17!SOX21;;chr15:80696666..80696700,+!p4@ARNT2!1.08!11.03!ARNT2;;chr3:147127142..147127168,+!p1@ZIC1!1.07!10.62!ZIC1;;chr18:52989031..52989079,-!p2@TCF4!1.06!24.79!TCF4;;chr12:125003087..125003141,-!p4@NCOR2!1.06!13.48!NCOR2;;chr16:67197654..67197716,+!p3@HSF4!1.06!10.49!HSF4;;chr19:30863271..30863338,+!p1@ZNF536!1.06!10.49!ZNF536;;chr1:40105299..40105326,-!p1@HEYL!1.06!10.35!HEYL;;chr19:38085768..38085821,+!p1@ZNF540!1.05!15.25!ZNF540;;chr8:80679993..80680011,-!p1@HEY1!1.04!14.44!HEY1;;chr6:108487289..108487302,+!p1@NR2E1!1.04!10.08!NR2E1;;chr7:115670804..115670825,-!p1@TFEC!1.04!10.08!TFEC;;chr16:51185172..51185197,-!p1@SALL1!1.04!9.94!SALL1;;chr15:57511609..57511651,+!p2@TCF12!1.03!16.62!TCF12;;chr7:64023410..64023428,-!p2@ZNF680!1.03!15.39!ZNF680;;chr2:63277948..63277974,+!p1@OTX1!1.03!9.81!OTX1;;chr15:31658288..31658338,+!p4@KLF13!1.03!9.81!KLF13;;chr9:3525867..3525902,-!p3@RFX3!1.02!33.51!RFX3;;chr16:79634595..79634620,-!p2@MAF!1.02!17.43!MAF;;chr18:53068911..53068935,-!p4@TCF4!1.02!10.62!TCF4;;chr12:106976656..106976672,+!p4@RFX4!1.02!9.53!RFX4;;chr16:67198633..67198671,+!p1@HSF4!1.02!9.40!HSF4;;chr14:21994337..21994442,-!p1@SALL2!1.01!26.15!SALL2;;chr1:61924375..61924380,+!p6@NFIA!1.01!13.08!NFIA;;chr8:106330696..106330719,+!p2@ZFPM2!1.01!11.71!ZFPM2;;chr1:170632285..170632309,+!p1@PRRX1!1.01!10.62!PRRX1;;chr19:57183114..57183145,-!p1@ZNF835!1.01!10.35!ZNF835;;chr11:125034640..125034655,+!p1@PKNOX2!1.01!9.13!PKNOX2;;chr3:181429641..181429650,+!p3@SOX2!1.01!9.13!SOX2;;chr3:114343039..114343085,-!p8@ZBTB20!1.00!8.99!ZBTB20;;chr21:34442584..34442587,+!p3@OLIG1!1.00!8.99!OLIG1;;chr3:24536253..24536328,-!p1@THRB!0.99!16.89!THRB;;chr16:86544113..86544145,+!p1@FOXF1!0.99!11.03!FOXF1;;chr19:57352109..57352153,-!p2@ZIM2!0.99!8.85!ZIM2;;chr2:42721205..42721307,+!p4@MTA3!0.99!8.72!MTA3;;chr14:29237009..29237049,+!p4@FOXG1!0.99!8.72!FOXG1;;chr7:150974206..150974255,-!p1@SMARCD3!0.98!55.16!SMARCD3;;chr17:38219143..38219154,+!p2@THRA!0.98!30.78!THRA;;chr14:73360799..73360817,-!p1@DPF3!0.98!30.24!DPF3;;chr1:61547894..61547968,+!p2@NFIA!0.98!25.20!NFIA;;chr19:53636125..53636178,-!p1@ZNF415!0.98!24.93!ZNF415;;chrX:70315688..70315709,+!p1@FOXO4!0.98!20.29!FOXO4;;chr20:62680984..62680999,-!p1@SOX18!0.98!11.44!SOX18;;chr2:113057415..113057477,+!p3@ZC3H6!0.98!11.30!ZC3H6;;chr4:57522166..57522260,-!p2@HOPX!0.98!9.94!HOPX;;chr11:113930401..113930422,+!p3@ZBTB16!0.98!8.58!ZBTB16;;chr2:178128250..178128293,-!p6@NFE2L2!0.97!21.52!NFE2L2;;chr17:38219184..38219195,+!p3@THRA!0.97!16.89!THRA;;chr5:178368186..178368238,+!p1@ZNF454!0.97!15.12!ZNF454;;chr7:73038839..73038862,-!p1@MLXIPL!0.97!8.31!MLXIPL;;chr18:53070846..53070902,-!p6@TCF4!0.97!8.31!TCF4;;chr5:92918919..92918942,+!p1@NR2F1!0.96!37.46!NR2F1;;chr5:124082322..124082364,-!p1@ZNF608!0.96!21.11!ZNF608;;chr7:6655225..6655279,+!p1@ENST00000457543!0.96!12.53!ZNF853;;chr12:103352277..103352324,+!p2@ASCL1!0.96!8.17!ASCL1;;chr10:119302150..119302163,+!p8@EMX2!0.96!8.04!EMX2;;chr10:119302182..119302196,+!p6@EMX2!0.96!8.04!EMX2;;chrX:85969626..85969664,+!p1@DACH2!0.96!8.04!DACH2;;chr9:14314131..14314147,-!p2@NFIB!0.95!45.08!NFIB;;chr1:8585945..8586056,-!p3@RERE!0.95!27.38!RERE;;chr2:214016314..214016343,-!p2@IKZF2!0.95!13.62!IKZF2;;chr18:6414884..6414942,-!p1@L3MBTL4!0.95!9.94!L3MBTL4;;chr11:8102819..8102845,+!p3@TUB!0.95!9.81!TUB;;chr16:67198683..67198698,+!p2@HSF4!0.95!7.90!HSF4;;chr19:7580549..7580596,+!p3@ZNF358!0.95!7.90!ZNF358;;chr2:2328299..2328363,-!p3@MYT1L!0.95!7.90!MYT1L;;chr19:57019215..57019250,+!p1@ZNF471!0.94!11.71!ZNF471;;chr20:50159198..50159299,-!p1@NFATC2!0.94!11.44!NFATC2;;chr2:145275982..145276003,-!p7@ZEB2!0.94!7.76!ZEB2;;chr10:119301928..119301955,+!p7@EMX2!0.94!7.76!EMX2;;chr17:74137321..74137337,-!p1@FOXJ1!0.94!7.63!FOXJ1;;chr7:50344289..50344323,+!p1@IKZF1!0.94!7.63!IKZF1;;chr13:46549911..46549956,-!p3@ZC3H13!0.93!10.90!ZC3H13;;chr10:119302268..119302282,+!p4@EMX2!0.93!7.49!EMX2;;chr2:182545234..182545252,-!p1@NEUROD1!0.93!7.49!NEUROD1;;chr15:80696836..80696853,+!p7@ARNT2!0.93!7.49!ARNT2;;chr5:139487363..139487444,+!p1@PURA!0.92!57.34!PURA;;chr1:165414325..165414369,-!p1@RXRG!0.92!7.35!RXRG;;chrX:82763292..82763317,+!p1@POU3F4!0.92!7.35!POU3F4;;chr7:64023441..64023462,-!p1@ZNF680!0.91!59.25!ZNF680;;chr3:187463179.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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000955;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000956;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001890;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001893;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002421;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003528 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/hippocampus%252c%2520adult%252c%2520donor10252.CNhs12312.10153-102I9.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/hippocampus%252c%2520adult%252c%2520donor10252.CNhs12312.10153-102I9.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/hippocampus%252c%2520adult%252c%2520donor10252.CNhs12312.10153-102I9.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/hippocampus%252c%2520adult%252c%2520donor10252.CNhs12312.10153-102I9.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/hippocampus%252c%2520adult%252c%2520donor10252.CNhs12312.10153-102I9.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10153-102I9 | |id=FF:10153-102I9 | ||
|is_a=EFO:0002091;;FF:0000002;;FF: | |is_a=EFO:0002091;;FF:0000002;;FF:0000210;;FF:0010153 | ||
|is_obsolete= | |||
|library_id=CNhs12312 | |||
|library_id_phase_based=2:CNhs12312 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10153 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10153 | |||
|name=hippocampus, adult, donor10252 | |name=hippocampus, adult, donor10252 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 61: | ||
|profile_cagescan=NCig10025,,, | |profile_cagescan=NCig10025,,, | ||
|profile_hcage=CNhs12312,LSID913,release011,COMPLETED | |profile_hcage=CNhs12312,LSID913,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=102 | |rna_box=102 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 79: | ||
|rna_weight_ug=62.1315 | |rna_weight_ug=62.1315 | ||
|sample_age=76 | |sample_age=76 | ||
|sample_category=tissues | |||
|sample_cell_catalog=NA | |sample_cell_catalog=NA | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 77: | Line 100: | ||
|sample_tissue=hippocampus | |sample_tissue=hippocampus | ||
|top_motifs=DBP:3.75729266515;HBP1_HMGB_SSRP1_UBTF:3.63197516257;RREB1:3.38330996847;ZFP161:3.35470630331;REST:3.34216664679;NHLH1,2:3.29017586802;OCT4_SOX2{dimer}:3.27825972769;CUX2:3.27336129986;PRDM1:3.22446564282;HOXA9_MEIS1:3.16901630452;SOX2:3.15243781181;MYFfamily:3.13065927488;FOXD3:3.09424626996;EGR1..3:3.07150329539;PRRX1,2:3.06875178361;RFX2..5_RFXANK_RFXAP:2.99440200203;GATA4:2.97218317674;MED-1{core}:2.92558988028;POU5F1:2.83523036742;NKX3-2:2.82006267749;MZF1:2.81643289038;GTF2I:2.80392442351;RFX1:2.78998255566;ATF2:2.78150966064;ZBTB6:2.7484871801;PATZ1:2.72095986506;TFAP2B:2.67151630585;SOX5:2.65588361984;MTE{core}:2.62247254905;ZNF384:2.57424085361;POU6F1:2.49321385364;AHR_ARNT_ARNT2:2.45714582221;MTF1:2.41227347589;SOX{8,9,10}:2.20785179369;PAX6:2.19217616371;FOXP1:2.17328541812;HOX{A4,D4}:2.15988277447;PAX4:2.15682591118;HIC1:2.12650745238;BPTF:2.10385712463;NFIX:2.07738796807;TGIF1:2.04857454667;PAX5:2.0116421911;MAZ:2.01139809661;IKZF2:2.01050881809;HMGA1,2:1.95445553849;FOXM1:1.95054894532;BREu{core}:1.89873018142;KLF4:1.87406459864;NKX6-1,2:1.84944207106;NANOG:1.82880512187;POU3F1..4:1.8161566507;RBPJ:1.81351647365;LMO2:1.75675686113;EP300:1.69734447119;GFI1B:1.68844725766;TEF:1.6266455882;FOXP3:1.60939961241;AR:1.59376872252;SMAD1..7,9:1.58764776322;SP1:1.4923991167;ARID5B:1.47801217295;NFIL3:1.3970264747;T:1.37547986457;NRF1:1.36905918354;POU1F1:1.35869926794;CDC5L:1.31972660082;GTF2A1,2:1.31375303466;GCM1,2:1.31250006342;HMX1:1.2810299517;EBF1:1.26366390243;MAFB:1.25788456074;SOX17:1.25209297129;ZIC1..3:1.24294437779;TLX2:1.23749255042;HAND1,2:1.23295541486;ZNF423:1.23198871244;FOX{F1,F2,J1}:1.23111505724;ZBTB16:1.23034530077;ADNP_IRX_SIX_ZHX:1.21922665643;NR3C1:1.18387521933;FOXQ1:1.17272977598;TOPORS:1.07590883311;TFDP1:1.07354436496;FOX{D1,D2}:1.02733092823;TFAP2{A,C}:1.01701147127;MYBL2:0.988185084686;FOXO1,3,4:0.957494183972;ONECUT1,2:0.954245350148;XBP1:0.927307342668;TLX1..3_NFIC{dimer}:0.924006185392;LEF1_TCF7_TCF7L1,2:0.906465038043;ZNF143:0.856068512817;FOX{I1,J2}:0.79437146398;ALX1:0.698231564393;GFI1:0.645408672458;JUN:0.582213109817;CRX:0.571965065097;STAT2,4,6:0.566066686194;STAT1,3:0.539577639733;SPZ1:0.533117976808;MYOD1:0.517100372374;SREBF1,2:0.505809433467;NKX2-3_NKX2-5:0.489716466588;GZF1:0.487151390468;PDX1:0.482127878773;HSF1,2:0.407331559244;FOXA2:0.377460265402;ZNF238:0.357725966882;CREB1:0.334135491909;ZEB1:0.314990615991;XCPE1{core}:0.307785326906;FOXN1:0.28766741952;UFEwm:0.282465296707;HOX{A6,A7,B6,B7}:0.28219618596;IRF7:0.239322040439;IRF1,2:0.228931401843;LHX3,4:0.177069848861;MEF2{A,B,C,D}:0.17497880858;FOXL1:0.161207598156;VSX1,2:0.158941994541;IKZF1:0.0801394736387;DMAP1_NCOR{1,2}_SMARC:0.0669198478902;AIRE:0.0465621950959;PAX2:0.0331521487943;ESRRA:-0.0216974126387;YY1:-0.0278283796391;RORA:-0.096912155155;ATF5_CREB3:-0.113283684577;NFY{A,B,C}:-0.134458625682;PITX1..3:-0.168183489619;PBX1:-0.208808331097;NFATC1..3:-0.223882736243;CDX1,2,4:-0.258260189681;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.278755460435;SPI1:-0.303462004619;ATF4:-0.348363658509;PAX1,9:-0.373982939646;NKX2-2,8:-0.441266842302;NFE2L2:-0.477168568381;SPIB:-0.523663398903;bHLH_family:-0.538610535474;CEBPA,B_DDIT3:-0.561556496041;SNAI1..3:-0.616191606479;PAX3,7:-0.642118046108;EVI1:-0.666398642261;NANOG{mouse}:-0.688382449498;PAX8:-0.760535649637;TFAP4:-0.788339700071;ETS1,2:-0.791960669916;TFCP2:-0.81817971579;HNF4A_NR2F1,2:-0.823780546484;GATA6:-0.82584679122;NFE2:-0.838919766361;TEAD1:-0.901130340975;ATF6:-0.911213131129;HNF1A:-0.911262345479;TP53:-1.01376943982;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.05971280084;TBX4,5:-1.10157872677;NKX3-1:-1.11528019443;HIF1A:-1.14823587653;RUNX1..3:-1.1554437644;ZNF148:-1.16942200489;RXR{A,B,G}:-1.17568428715;POU2F1..3:-1.19178824593;NFE2L1:-1.21528059516;NFKB1_REL_RELA:-1.23565978591;BACH2:-1.24135610574;TAL1_TCF{3,4,12}:-1.26282222752;E2F1..5:-1.30260110448;FOS_FOS{B,L1}_JUN{B,D}:-1.3118737746;ESR1:-1.35511035014;FOSL2:-1.35706216675;ALX4:-1.38818512737;GLI1..3:-1.39107400061;ELK1,4_GABP{A,B1}:-1.39383050136;ELF1,2,4:-1.39405455696;TBP:-1.43818770784;NR5A1,2:-1.493650727;RXRA_VDR{dimer}:-1.56720444913;NKX2-1,4:-1.58883698495;MYB:-1.64059356415;HLF:-1.67374014623;NR1H4:-1.69888039273;SRF:-1.77289776924;NR6A1:-1.81051581083;PPARG:-1.89854391911;HOX{A5,B5}:-2.53507935642;STAT5{A,B}:-2.55486792004;EN1,2:-2.62734708095;HES1:-2.69129760201 | |top_motifs=DBP:3.75729266515;HBP1_HMGB_SSRP1_UBTF:3.63197516257;RREB1:3.38330996847;ZFP161:3.35470630331;REST:3.34216664679;NHLH1,2:3.29017586802;OCT4_SOX2{dimer}:3.27825972769;CUX2:3.27336129986;PRDM1:3.22446564282;HOXA9_MEIS1:3.16901630452;SOX2:3.15243781181;MYFfamily:3.13065927488;FOXD3:3.09424626996;EGR1..3:3.07150329539;PRRX1,2:3.06875178361;RFX2..5_RFXANK_RFXAP:2.99440200203;GATA4:2.97218317674;MED-1{core}:2.92558988028;POU5F1:2.83523036742;NKX3-2:2.82006267749;MZF1:2.81643289038;GTF2I:2.80392442351;RFX1:2.78998255566;ATF2:2.78150966064;ZBTB6:2.7484871801;PATZ1:2.72095986506;TFAP2B:2.67151630585;SOX5:2.65588361984;MTE{core}:2.62247254905;ZNF384:2.57424085361;POU6F1:2.49321385364;AHR_ARNT_ARNT2:2.45714582221;MTF1:2.41227347589;SOX{8,9,10}:2.20785179369;PAX6:2.19217616371;FOXP1:2.17328541812;HOX{A4,D4}:2.15988277447;PAX4:2.15682591118;HIC1:2.12650745238;BPTF:2.10385712463;NFIX:2.07738796807;TGIF1:2.04857454667;PAX5:2.0116421911;MAZ:2.01139809661;IKZF2:2.01050881809;HMGA1,2:1.95445553849;FOXM1:1.95054894532;BREu{core}:1.89873018142;KLF4:1.87406459864;NKX6-1,2:1.84944207106;NANOG:1.82880512187;POU3F1..4:1.8161566507;RBPJ:1.81351647365;LMO2:1.75675686113;EP300:1.69734447119;GFI1B:1.68844725766;TEF:1.6266455882;FOXP3:1.60939961241;AR:1.59376872252;SMAD1..7,9:1.58764776322;SP1:1.4923991167;ARID5B:1.47801217295;NFIL3:1.3970264747;T:1.37547986457;NRF1:1.36905918354;POU1F1:1.35869926794;CDC5L:1.31972660082;GTF2A1,2:1.31375303466;GCM1,2:1.31250006342;HMX1:1.2810299517;EBF1:1.26366390243;MAFB:1.25788456074;SOX17:1.25209297129;ZIC1..3:1.24294437779;TLX2:1.23749255042;HAND1,2:1.23295541486;ZNF423:1.23198871244;FOX{F1,F2,J1}:1.23111505724;ZBTB16:1.23034530077;ADNP_IRX_SIX_ZHX:1.21922665643;NR3C1:1.18387521933;FOXQ1:1.17272977598;TOPORS:1.07590883311;TFDP1:1.07354436496;FOX{D1,D2}:1.02733092823;TFAP2{A,C}:1.01701147127;MYBL2:0.988185084686;FOXO1,3,4:0.957494183972;ONECUT1,2:0.954245350148;XBP1:0.927307342668;TLX1..3_NFIC{dimer}:0.924006185392;LEF1_TCF7_TCF7L1,2:0.906465038043;ZNF143:0.856068512817;FOX{I1,J2}:0.79437146398;ALX1:0.698231564393;GFI1:0.645408672458;JUN:0.582213109817;CRX:0.571965065097;STAT2,4,6:0.566066686194;STAT1,3:0.539577639733;SPZ1:0.533117976808;MYOD1:0.517100372374;SREBF1,2:0.505809433467;NKX2-3_NKX2-5:0.489716466588;GZF1:0.487151390468;PDX1:0.482127878773;HSF1,2:0.407331559244;FOXA2:0.377460265402;ZNF238:0.357725966882;CREB1:0.334135491909;ZEB1:0.314990615991;XCPE1{core}:0.307785326906;FOXN1:0.28766741952;UFEwm:0.282465296707;HOX{A6,A7,B6,B7}:0.28219618596;IRF7:0.239322040439;IRF1,2:0.228931401843;LHX3,4:0.177069848861;MEF2{A,B,C,D}:0.17497880858;FOXL1:0.161207598156;VSX1,2:0.158941994541;IKZF1:0.0801394736387;DMAP1_NCOR{1,2}_SMARC:0.0669198478902;AIRE:0.0465621950959;PAX2:0.0331521487943;ESRRA:-0.0216974126387;YY1:-0.0278283796391;RORA:-0.096912155155;ATF5_CREB3:-0.113283684577;NFY{A,B,C}:-0.134458625682;PITX1..3:-0.168183489619;PBX1:-0.208808331097;NFATC1..3:-0.223882736243;CDX1,2,4:-0.258260189681;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.278755460435;SPI1:-0.303462004619;ATF4:-0.348363658509;PAX1,9:-0.373982939646;NKX2-2,8:-0.441266842302;NFE2L2:-0.477168568381;SPIB:-0.523663398903;bHLH_family:-0.538610535474;CEBPA,B_DDIT3:-0.561556496041;SNAI1..3:-0.616191606479;PAX3,7:-0.642118046108;EVI1:-0.666398642261;NANOG{mouse}:-0.688382449498;PAX8:-0.760535649637;TFAP4:-0.788339700071;ETS1,2:-0.791960669916;TFCP2:-0.81817971579;HNF4A_NR2F1,2:-0.823780546484;GATA6:-0.82584679122;NFE2:-0.838919766361;TEAD1:-0.901130340975;ATF6:-0.911213131129;HNF1A:-0.911262345479;TP53:-1.01376943982;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.05971280084;TBX4,5:-1.10157872677;NKX3-1:-1.11528019443;HIF1A:-1.14823587653;RUNX1..3:-1.1554437644;ZNF148:-1.16942200489;RXR{A,B,G}:-1.17568428715;POU2F1..3:-1.19178824593;NFE2L1:-1.21528059516;NFKB1_REL_RELA:-1.23565978591;BACH2:-1.24135610574;TAL1_TCF{3,4,12}:-1.26282222752;E2F1..5:-1.30260110448;FOS_FOS{B,L1}_JUN{B,D}:-1.3118737746;ESR1:-1.35511035014;FOSL2:-1.35706216675;ALX4:-1.38818512737;GLI1..3:-1.39107400061;ELK1,4_GABP{A,B1}:-1.39383050136;ELF1,2,4:-1.39405455696;TBP:-1.43818770784;NR5A1,2:-1.493650727;RXRA_VDR{dimer}:-1.56720444913;NKX2-1,4:-1.58883698495;MYB:-1.64059356415;HLF:-1.67374014623;NR1H4:-1.69888039273;SRF:-1.77289776924;NR6A1:-1.81051581083;PPARG:-1.89854391911;HOX{A5,B5}:-2.53507935642;STAT5{A,B}:-2.55486792004;EN1,2:-2.62734708095;HES1:-2.69129760201 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10153-102I9;search_select_hide=table117:FF:10153-102I9 | |||
}} | }} | ||
Latest revision as of 12:22, 3 June 2020
| Name: | hippocampus, adult, donor10252 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12312 |
| Sample type: | tissues |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| HumanCAGEScan Download raw sequence, BAM & CTSS | ||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12312
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12312
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0445 |
| 10 | 10 | 0.05 |
| 100 | 100 | 0.369 |
| 101 | 101 | 0.503 |
| 102 | 102 | 0.983 |
| 103 | 103 | 0.116 |
| 104 | 104 | 0.107 |
| 105 | 105 | 0.16 |
| 106 | 106 | 0.0475 |
| 107 | 107 | 0.141 |
| 108 | 108 | 0.881 |
| 109 | 109 | 0.00128 |
| 11 | 11 | 0.01 |
| 110 | 110 | 0.0501 |
| 111 | 111 | 0.0881 |
| 112 | 112 | 0.281 |
| 113 | 113 | 0.656 |
| 114 | 114 | 0.104 |
| 115 | 115 | 0.974 |
| 116 | 116 | 0.182 |
| 117 | 117 | 0.0123 |
| 118 | 118 | 0.139 |
| 119 | 119 | 0.215 |
| 12 | 12 | 0.587 |
| 120 | 120 | 0.208 |
| 121 | 121 | 0.335 |
| 122 | 122 | 0.737 |
| 123 | 123 | 0.977 |
| 124 | 124 | 0.39 |
| 125 | 125 | 0.318 |
| 126 | 126 | 0.0413 |
| 127 | 127 | 0.405 |
| 128 | 128 | 0.244 |
| 129 | 129 | 0.546 |
| 13 | 13 | 0.00261 |
| 130 | 130 | 0.304 |
| 131 | 131 | 0.0603 |
| 132 | 132 | 0.491 |
| 133 | 133 | 0.113 |
| 134 | 134 | 0.577 |
| 135 | 135 | 0.481 |
| 136 | 136 | 0.00235 |
| 137 | 137 | 0.724 |
| 138 | 138 | 0.807 |
| 139 | 139 | 0.168 |
| 14 | 14 | 0.819 |
| 140 | 140 | 0.744 |
| 141 | 141 | 0.385 |
| 142 | 142 | 0.601 |
| 143 | 143 | 0.0334 |
| 144 | 144 | 0.992 |
| 145 | 145 | 0.185 |
| 146 | 146 | 0.543 |
| 147 | 147 | 0.899 |
| 148 | 148 | 0.212 |
| 149 | 149 | 0.275 |
| 15 | 15 | 0.0736 |
| 150 | 150 | 0.164 |
| 151 | 151 | 0.565 |
| 152 | 152 | 0.0954 |
| 153 | 153 | 0.996 |
| 154 | 154 | 0.54 |
| 155 | 155 | 0.583 |
| 156 | 156 | 0.339 |
| 157 | 157 | 0.44 |
| 158 | 158 | 0.405 |
| 159 | 159 | 0.0271 |
| 16 | 16 | 0.0432 |
| 160 | 160 | 0.218 |
| 161 | 161 | 0.198 |
| 162 | 162 | 0.745 |
| 163 | 163 | 0.896 |
| 164 | 164 | 0.0354 |
| 165 | 165 | 0.0959 |
| 166 | 166 | 0.713 |
| 167 | 167 | 0.734 |
| 168 | 168 | 0.459 |
| 169 | 169 | 0.00981 |
| 17 | 17 | 0.107 |
| 18 | 18 | 0.0817 |
| 19 | 19 | 0.197 |
| 2 | 2 | 0.847 |
| 20 | 20 | 0.204 |
| 21 | 21 | 0.0456 |
| 22 | 22 | 0.224 |
| 23 | 23 | 0.412 |
| 24 | 24 | 0.0517 |
| 25 | 25 | 0.42 |
| 26 | 26 | 9.72582e-4 |
| 27 | 27 | 0.702 |
| 28 | 28 | 0.674 |
| 29 | 29 | 0.00663 |
| 3 | 3 | 0.0464 |
| 30 | 30 | 0.849 |
| 31 | 31 | 0.858 |
| 32 | 32 | 0.0256 |
| 33 | 33 | 0.0466 |
| 34 | 34 | 0.684 |
| 35 | 35 | 0.582 |
| 36 | 36 | 0.136 |
| 37 | 37 | 0.0353 |
| 38 | 38 | 0.353 |
| 39 | 39 | 0.33 |
| 4 | 4 | 0.635 |
| 40 | 40 | 0.0278 |
| 41 | 41 | 0.272 |
| 42 | 42 | 0.199 |
| 43 | 43 | 0.126 |
| 44 | 44 | 0.151 |
| 45 | 45 | 0.696 |
| 46 | 46 | 0.0729 |
| 47 | 47 | 0.058 |
| 48 | 48 | 0.0518 |
| 49 | 49 | 0.214 |
| 5 | 5 | 0.62 |
| 50 | 50 | 0.384 |
| 51 | 51 | 0.373 |
| 52 | 52 | 0.546 |
| 53 | 53 | 0.874 |
| 54 | 54 | 0.369 |
| 55 | 55 | 0.725 |
| 56 | 56 | 0.503 |
| 57 | 57 | 0.348 |
| 58 | 58 | 0.292 |
| 59 | 59 | 0.0644 |
| 6 | 6 | 0.909 |
| 60 | 60 | 0.0682 |
| 61 | 61 | 0.0988 |
| 62 | 62 | 0.185 |
| 63 | 63 | 0.196 |
| 64 | 64 | 0.154 |
| 65 | 65 | 0.248 |
| 66 | 66 | 0.117 |
| 67 | 67 | 0.257 |
| 68 | 68 | 0.173 |
| 69 | 69 | 0.342 |
| 7 | 7 | 0.0554 |
| 70 | 70 | 0.0497 |
| 71 | 71 | 0.0109 |
| 72 | 72 | 0.39 |
| 73 | 73 | 0.0295 |
| 74 | 74 | 0.97 |
| 75 | 75 | 0.0259 |
| 76 | 76 | 0.352 |
| 77 | 77 | 0.171 |
| 78 | 78 | 0.00124 |
| 79 | 79 | 0.271 |
| 8 | 8 | 0.0782 |
| 80 | 80 | 0.439 |
| 81 | 81 | 0.606 |
| 82 | 82 | 0.608 |
| 83 | 83 | 0.017 |
| 84 | 84 | 0.556 |
| 85 | 85 | 0.242 |
| 86 | 86 | 0.209 |
| 87 | 87 | 1.81986e-4 |
| 88 | 88 | 0.807 |
| 89 | 89 | 0.279 |
| 9 | 9 | 0.413 |
| 90 | 90 | 0.105 |
| 91 | 91 | 0.875 |
| 92 | 92 | 0.486 |
| 93 | 93 | 0.977 |
| 94 | 94 | 0.184 |
| 95 | 95 | 0.00919 |
| 96 | 96 | 0.909 |
| 97 | 97 | 0.796 |
| 98 | 98 | 0.252 |
| 99 | 99 | 0.567 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12312
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000002 in vivo cell sample
FF:0000210 human sample
FF:0010153 hippocampus - adult sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0001954 (Ammon's horn)
0000956 (cerebral cortex)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0003528 (brain grey matter)
0002791 (regional part of telencephalon)
0000467 (anatomical system)
0002619 (regional part of cerebral cortex)
0001062 (anatomical entity)
0000480 (anatomical group)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0002020 (gray matter)
0003022 (lobe parts of cerebral cortex)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0002421 (hippocampal formation)
0001016 (nervous system)
0001869 (cerebral hemisphere)
0001893 (telencephalon)
0001890 (forebrain)
0000203 (pallium)
0000349 (limbic system)
0002600 (limbic lobe)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010153 (hippocampus - adult sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA
