FF:12214-129D9: Difference between revisions

Latest revision as of 18:34, 4 June 2020

Name:	CD19+ B Cells (pluriselect), donor090612, donation3
Species:	Human (Homo sapiens)
Library ID:	CNhs12188,RDhi10012
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	blood
dev stage	NA
sex	NA
age	NA
cell type	b cell
cell line	NA
company	NA
collaboration	Matched_genome_OSC(contact:Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	NA
extraction protocol (Details)	NA

CAGE Accession numbers

Method		Sample accession id
RNA-Seq		SAMD00013690

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12188		CAGE		DRX008057		DRR008929
RDhi10012		RNA-Seq		DRX012346		DRR013794

Accession ID Hg19

Library id		BAM		CTSS
CNhs12188		DRZ000354		DRZ001739
RDhi10012		DRZ002995

Accession ID Hg38

Library id		BAM		CTSS
CNhs12188		DRZ011704		DRZ013089
RDhi10012

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.105
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.201
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0.291
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.299
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.295
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0.291
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.508
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.683
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.283
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	1.457
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.45
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.261
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.525
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.291
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.602
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.233
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	1.095
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.291
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.517
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.317
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0.28
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.291
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	1.06
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.761
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12188

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	3.6557e-6
MA0003.1	MA0003.1	0.53
MA0004.1	MA0004.1	0.363
MA0006.1	MA0006.1	0.313
MA0007.1	MA0007.1	0.677
MA0009.1	MA0009.1	0.934
MA0014.1	MA0014.1	0.426
MA0017.1	MA0017.1	0.0369
MA0018.2	MA0018.2	0.383
MA0019.1	MA0019.1	0.53
MA0024.1	MA0024.1	0.948
MA0025.1	MA0025.1	0.51
MA0027.1	MA0027.1	0.501
MA0028.1	MA0028.1	2.00207e-5
MA0029.1	MA0029.1	0.894
MA0030.1	MA0030.1	0.0419
MA0031.1	MA0031.1	0.0898
MA0035.2	MA0035.2	0.268
MA0038.1	MA0038.1	0.621
MA0039.2	MA0039.2	0.557
MA0040.1	MA0040.1	0.871
MA0041.1	MA0041.1	0.0995
MA0042.1	MA0042.1	0.692
MA0043.1	MA0043.1	0.681
MA0046.1	MA0046.1	0.849
MA0047.2	MA0047.2	0.385
MA0048.1	MA0048.1	0.57
MA0050.1	MA0050.1	3.8851e-10
MA0051.1	MA0051.1	5.41444e-5
MA0052.1	MA0052.1	0.194
MA0055.1	MA0055.1	0.326
MA0057.1	MA0057.1	0.826
MA0058.1	MA0058.1	0.214
MA0059.1	MA0059.1	0.201
MA0060.1	MA0060.1	0.903
MA0061.1	MA0061.1	6.24792e-5
MA0062.2	MA0062.2	4.08004e-15
MA0065.2	MA0065.2	0.0328
MA0066.1	MA0066.1	0.34
MA0067.1	MA0067.1	0.474
MA0068.1	MA0068.1	0.38
MA0069.1	MA0069.1	0.469
MA0070.1	MA0070.1	0.383
MA0071.1	MA0071.1	0.676
MA0072.1	MA0072.1	0.729
MA0073.1	MA0073.1	0.652
MA0074.1	MA0074.1	0.734
MA0076.1	MA0076.1	2.68336e-8
MA0077.1	MA0077.1	0.279
MA0078.1	MA0078.1	0.766
MA0079.2	MA0079.2	0.489
MA0080.2	MA0080.2	1.39282e-11
MA0081.1	MA0081.1	4.95923e-4
MA0083.1	MA0083.1	0.143
MA0084.1	MA0084.1	0.366
MA0087.1	MA0087.1	0.349
MA0088.1	MA0088.1	0.101
MA0090.1	MA0090.1	1.77186e-4
MA0091.1	MA0091.1	0.595
MA0092.1	MA0092.1	0.668
MA0093.1	MA0093.1	0.438
MA0099.2	MA0099.2	0.00246
MA0100.1	MA0100.1	0.259
MA0101.1	MA0101.1	0.00626
MA0102.2	MA0102.2	0.534
MA0103.1	MA0103.1	0.00811
MA0104.2	MA0104.2	0.089
MA0105.1	MA0105.1	1.2206e-7
MA0106.1	MA0106.1	0.342
MA0107.1	MA0107.1	0.00308
MA0108.2	MA0108.2	3.37733e-7
MA0111.1	MA0111.1	0.395
MA0112.2	MA0112.2	0.0429
MA0113.1	MA0113.1	0.828
MA0114.1	MA0114.1	0.103
MA0115.1	MA0115.1	0.382
MA0116.1	MA0116.1	2.80284e-5
MA0117.1	MA0117.1	0.473
MA0119.1	MA0119.1	0.447
MA0122.1	MA0122.1	0.257
MA0124.1	MA0124.1	0.878
MA0125.1	MA0125.1	0.649
MA0131.1	MA0131.1	0.0838
MA0135.1	MA0135.1	0.0489
MA0136.1	MA0136.1	1.84816e-17
MA0137.2	MA0137.2	0.606
MA0138.2	MA0138.2	0.61
MA0139.1	MA0139.1	0.203
MA0140.1	MA0140.1	0.0786
MA0141.1	MA0141.1	0.842
MA0142.1	MA0142.1	0.125
MA0143.1	MA0143.1	0.965
MA0144.1	MA0144.1	0.939
MA0145.1	MA0145.1	0.742
MA0146.1	MA0146.1	0.37
MA0147.1	MA0147.1	0.0795
MA0148.1	MA0148.1	0.812
MA0149.1	MA0149.1	0.0853
MA0150.1	MA0150.1	0.602
MA0152.1	MA0152.1	0.413
MA0153.1	MA0153.1	0.125
MA0154.1	MA0154.1	5.93054e-4
MA0155.1	MA0155.1	0.879
MA0156.1	MA0156.1	6.902e-15
MA0157.1	MA0157.1	0.0725
MA0159.1	MA0159.1	0.0293
MA0160.1	MA0160.1	0.524
MA0162.1	MA0162.1	0.893
MA0163.1	MA0163.1	9.1666e-9
MA0164.1	MA0164.1	0.95
MA0258.1	MA0258.1	0.155
MA0259.1	MA0259.1	0.368

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12188

Novel motif	Logo	P-value
1	1	0.121
10	10	0.0398
100	100	0.609
101	101	0.5
102	102	0.993
103	103	0.125
104	104	0.177
105	105	0.323
106	106	0.652
107	107	0.227
108	108	0.229
109	109	0.111
11	11	0.21
110	110	0.16
111	111	0.288
112	112	0.252
113	113	0.0347
114	114	0.531
115	115	0.867
116	116	0.71
117	117	0.00148
118	118	0.171
119	119	0.721
12	12	0.998
120	120	0.546
121	121	0.424
122	122	0.311
123	123	0.236
124	124	0.114
125	125	0.37
126	126	0.411
127	127	0.598
128	128	0.472
129	129	0.822
13	13	0.428
130	130	0.565
131	131	0.58
132	132	0.351
133	133	0.0118
134	134	0.772
135	135	0.63
136	136	0.601
137	137	0.129
138	138	0.614
139	139	0.158
14	14	0.369
140	140	0.973
141	141	0.633
142	142	0.655
143	143	0.0282
144	144	0.714
145	145	0.483
146	146	0.124
147	147	0.105
148	148	0.108
149	149	0.445
15	15	0.128
150	150	0.739
151	151	0.728
152	152	0.484
153	153	0.697
154	154	0.852
155	155	0.00441
156	156	0.293
157	157	0.26
158	158	0.158
159	159	0.137
16	16	0.948
160	160	0.352
161	161	0.11
162	162	0.849
163	163	0.334
164	164	0.435
165	165	0.203
166	166	0.802
167	167	0.144
168	168	0.127
169	169	0.562
17	17	0.722
18	18	0.451
19	19	0.675
2	2	0.81
20	20	0.593
21	21	0.87
22	22	0.782
23	23	0.695
24	24	0.443
25	25	0.0152
26	26	0.192
27	27	0.205
28	28	0.477
29	29	0.0748
3	3	0.0689
30	30	0.38
31	31	0.768
32	32	0.33
33	33	0.467
34	34	0.892
35	35	0.139
36	36	0.0226
37	37	0.159
38	38	0.594
39	39	0.481
4	4	0.582
40	40	0.185
41	41	0.138
42	42	0.114
43	43	0.162
44	44	0.484
45	45	0.945
46	46	0.188
47	47	0.124
48	48	0.196
49	49	0.12
5	5	0.406
50	50	0.855
51	51	0.486
52	52	0.442
53	53	0.478
54	54	0.784
55	55	0.11
56	56	0.678
57	57	0.504
58	58	0.0218
59	59	0.32
6	6	0.77
60	60	0.444
61	61	0.0225
62	62	0.0188
63	63	0.748
64	64	0.388
65	65	0.865
66	66	0.848
67	67	0.638
68	68	0.278
69	69	0.737
7	7	0.0718
70	70	0.189
71	71	0.0381
72	72	0.0201
73	73	0.58
74	74	0.258
75	75	0.0141
76	76	0.0754
77	77	0.655
78	78	0.15
79	79	0.373
8	8	0.659
80	80	0.00334
81	81	0.233
82	82	0.113
83	83	0.839
84	84	0.336
85	85	0.972
86	86	0.0931
87	87	0.222
88	88	0.903
89	89	0.648
9	9	0.393
90	90	0.0289
91	91	0.637
92	92	0.755
93	93	0.891
94	94	0.0578
95	95	0.0103
96	96	0.438
97	97	0.495
98	98	0.211
99	99	0.0455

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12188

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000025 CD19-positive B cell sample
FF:0000210 human sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000542 (lymphocyte)
0000219 (motile cell)
0000945 (lymphocyte of B lineage)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0002242 (nucleate cell)
0000255 (eukaryotic cell)
0000236 (B cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000025 (CD19-positive B cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)
CL:0000051 (common lymphoid progenitor)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
+|DRA_sample_Accession=RNA-Seq@SAMD00013690
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000723,CL:0000048,CL:0000988,CL:0000548,CL:0000034,CL:0002032,CL:0000012,CL:0002320,CL:0000063,CL:0002371,CL:0000542,CL:0000219,CL:0000945,CL:0000004,CL:0000134,CL:0000738,CL:0002087,CL:0000255,CL:0000236,CL:0000838,CL:0002031,CL:0000037,CL:0000566,CL:0000837,CL:0000826,CL:0000051
+|accession_numbers=CAGE;DRX008057;DRR008929;DRZ000354;DRZ001739;DRZ011704;DRZ013089!RNA-Seq;DRX012346;DRR013794;DRZ002995;
+|ancestors_in_anatomy_facet=
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000542,CL:0000219,CL:0000945,CL:0000738,CL:0002087,CL:0002242,CL:0000255,CL:0000236
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000025
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr16:85932760..85932775,+!p1@IRF8!2.53!341.55!IRF8;;chr2:100759010..100759035,-!p1@AFF3!2.40!252.82!AFF3;;chr19:50922187..50922204,+!p1@SPIB!2.37!234.70!SPIB;;chr11:111249993..111250006,-!p1@POU2AF1!2.26!179.36!POU2AF1;;chr2:100759037..100759058,-!p2@AFF3!2.14!136.43!AFF3;;chr2:231090433..231090469,+!p1@SP140!2.10!124.03!SP140;;chr11:47400078..47400106,-!p1@SPI1!2.09!121.16!SPI1;;chr6:391743..391759,+!p1@IRF4!2.05!110.67!IRF4;;chr2:231090471..231090504,+!p2@SP140!1.97!91.59!SP140;;chr6:91006518..91006570,-!p1@BACH2!1.96!199.40!BACH2;;chr17:38020392..38020477,-!p1@IKZF3!1.93!84.91!IKZF3;;chr5:88178983..88179012,-!p1@MEF2C!1.80!457.95!MEF2C;;chr8:86099884..86099918,+!p4@E2F5!1.77!57.24!E2F5;;chr2:100758991..100759009,-!p3@AFF3!1.77!57.24!AFF3;;chr2:68592406..68592424,+!p1@PLEK!1.77!57.24!PLEK;;chr3:71355163..71355209,-!p5@FOXP1!1.74!73.46!FOXP1;;chr6:91006575..91006602,-!p2@BACH2!1.68!68.69!BACH2;;chr7:50344251..50344288,+!p3@IKZF1!1.68!46.75!IKZF1;;chr7:50343634..50343717,+!p2@IKZF1!1.65!43.89!IKZF1;;chr3:32023232..32023273,+!p1@ZNF860!1.61!56.29!ZNF860;;chr2:60780607..60780624,-!p2@BCL11A!1.56!103.99!BCL11A;;chr19:16435625..16435682,+!p1@KLF2!1.53!1011.30!KLF2;;chr17:38020557..38020572,-!p4@IKZF3!1.52!32.44!IKZF3;;chr8:86089627..86089653,+!p3@E2F5!1.46!31.48!E2F5;;chr19:13213662..13213686,-!p1@LYL1!1.43!38.16!LYL1;;chr2:60781201..60781258,-!p3@BCL11A!1.43!25.76!BCL11A;;chr18:52989031..52989079,-!p2@TCF4!1.42!58.20!TCF4;;chr2:60778035..60778060,-!p4@BCL11A!1.40!28.62!BCL11A;;chr17:38020516..38020544,-!p5@IKZF3!1.36!21.94!IKZF3;;chr5:158526756..158526797,-!p3@EBF1!1.36!21.94!EBF1;;chr7:50344289..50344323,+!p1@IKZF1!1.36!21.94!IKZF1;;chr4:57522513..57522548,-!p4@HOPX!1.34!20.99!HOPX;;chr13:41593425..41593480,-!p1@ELF1!1.32!122.12!ELF1;;chr5:88179017..88179046,-!p2@MEF2C!1.30!75.37!MEF2C;;chr1:25256756..25256774,-!p1@RUNX3!1.28!33.39!RUNX3;;chr20:56195474..56195506,-!p1@ZBP1!1.28!18.13!ZBP1;;chr4:185395633..185395651,-!p2@IRF2!1.26!27.67!IRF2;;chr2:68592394..68592405,+!p2@PLEK!1.26!17.17!PLEK;;chr8:86089531..86089544,+!p7@E2F5!1.26!17.17!E2F5;;chr17:37934204..37934241,-!p3@IKZF3!1.26!17.17!IKZF3;;chr19:42636586..42636607,-!p1@POU2F2!1.25!45.79!POU2F2;;chr4:185395590..185395627,-!p3@IRF2!1.25!20.99!IRF2;;chr10:94449703..94449718,+!p1@HHEX!1.24!62.97!HHEX;;chr3:71631151..71631194,-!p15@FOXP1!1.23!18.13!FOXP1;;chr20:50159198..50159299,-!p1@NFATC2!1.21!21.94!NFATC2;;chr2:100759060..100759073,-!p8@AFF3!1.21!15.26!AFF3;;chr14:69262947..69262986,-!p3@ZFP36L1!1.20!18.13!ZFP36L1;;chr3:71409904..71409927,-!p46@FOXP1!1.18!14.31!FOXP1;;chr7:77469439..77469459,+!p6@PHTF2!1.18!14.31!PHTF2;;chr11:128563948..128564003,+!p1@FLI1!1.16!161.24!FLI1;;chr1:151319654..151319698,-!p2@RFX5!1.16!29.58!RFX5;;chr7:50348268..50348366,+!p4@IKZF1!1.16!13.36!IKZF1;;chr7:63505799..63505904,+!p1@ZNF727!1.16!13.36!ZNF727;;chr9:37034186..37034216,-!p2@PAX5!1.16!13.36!PAX5;;chr19:13213704..13213726,-!p3@LYL1!1.14!17.17!LYL1;;chr8:81397846..81397860,+!p3@ZBTB10!1.14!16.22!ZBTB10;;chrX:101186981..101187030,-!p1@ZMAT1!1.13!41.02!ZMAT1;;chr19:36391434..36391450,-!p1@NFKBID!1.13!24.81!NFKBID;;chr16:85936412..85936431,+!p2@IRF8!1.13!12.40!IRF8;;chr17:38020607..38020621,-!p9@IKZF3!1.13!12.40!IKZF3;;chr2:100759076..100759088,-!p10@AFF3!1.13!12.40!AFF3;;chr2:231090344..231090361,-!p3@SP110!1.13!12.40!SP110;;chr2:61108695..61108753,+!p1@REL!1.12!83.96!REL;;chr19:58220517..58220583,-!p1@ZNF154!1.12!39.12!ZNF154;;chr3:18486354..18486377,-!p2@SATB1!1.12!15.26!SATB1;;chr7:64838786..64838809,+!p2@ZNF92!1.10!65.83!ZNF92;;chr6:91006503..91006517,-!p3@BACH2!1.10!11.45!BACH2;;chr3:18487057..18487105,-!p4@SATB1!1.10!11.45!SATB1;;chr9:37027156..37027193,-!p4@PAX5!1.10!11.45!PAX5;;chr14:75988771..75988826,+!p1@BATF!1.09!15.26!BATF;;chrX:106960221..106960236,-!p3@TSC22D3!1.08!30.53!TSC22D3;;chr9:37003148..37003152,-!p5@PAX5!1.06!10.49!PAX5;;chr5:88120151..88120177,-!p6@MEF2C!1.06!10.49!MEF2C;;chr14:64971288..64971316,-!p2@ZBTB25!1.03!30.53!ZBTB25;;chr19:19779619..19779670,+!p1@ZNF101!1.03!27.67!ZNF101;;chr4:81104895..81104920,+!p2@PRDM8!1.02!14.31!PRDM8;;chr10:94451574..94451587,+!p6@HHEX!1.02!9.54!HHEX;;chr21:36421535..36421610,-!p2@RUNX1!1.01!33.39!RUNX1;;chr7:77428066..77428132,+!p2@PHTF2!1.00!60.11!PHTF2;;chr19:45579725..45579743,-!p1@ZNF296!1.00!41.02!ZNF296;;chr19:11959532..11959593,+!p1@ZNF439!1.00!35.30!ZNF439;;chr10:94449675..94449694,+!p2@HHEX!1.00!24.81!HHEX;;chr1:10754477..10754517,-!p1@CASZ1!1.00!15.26!CASZ1;;chr16:3313791..3313834,+!p2@ZNF263!0.99!20.04!ZNF263;;chr19:20748574..20748599,-!p1@ZNF737!0.98!52.47!ZNF737;;chr18:52989001..52989030,-!p10@TCF4!0.98!9.54!TCF4;;chr17:56565257..56565283,-!p2@HSF5!0.98!8.59!HSF5;;chr7:50344144..50344157,+!p6@IKZF1!0.98!8.59!IKZF1;;chr11:47400062..47400077,-!p2@SPI1!0.98!8.59!SPI1;;chr2:208394817..208394834,+!p3@CREB1!0.97!34.35!CREB1;;chr7:64126503..64126528,+!p1@ZNF107!0.96!59.15!ZNF107;;chr9:117150254..117150271,-!p1@AKNA!0.96!22.90!AKNA;;chr2:231280954..231280965,+!p2@SP100!0.96!15.26!SP100;;chr2:145277640..145277771,-!p1@ZEB2!0.95!110.67!ZEB2;;chr2:208031542..208031595,-!p2@KLF7!0.95!57.24!KLF7;;chrX:106960180..106960197,-!p2@TSC22D3!0.94!30.53!TSC22D3;;chr3:71630844..71630862,-!p40@FOXP1!0.94!7.63!FOXP1;;chr3:71631217..71631234,-!p33@FOXP1!0.94!7.63!FOXP1;;chr19:36204309..36204335,+!p1@ZBTB32!0.94!7.63!ZBTB32;;chr7:150102756..150102772,+!p5@ZNF775!0.94!7.63!ZNF775;;chr13:41593493..41593506,-!p8@ELF1!0.94!7.63!ELF1;;chrX:106960285..106960299,-!p1@TSC22D3!0.93!207.98!TSC22D3;;chr2:231084659..231084721,-!p1@SP110!0.92!178.41!SP110;;chr10:104154246..104154347,+!p3@NFKB2!0.92!46.75!NFKB2;;chr4:57522166..57522260,-!p2@HOPX!0.92!8.59!HOPX;;chr2:61108650..61108687,+!p2@REL!0.91!36.25!REL;;chr7:64126535..64126559,+!p2@ZNF107!0.90!15.26!ZNF107;;chrX:101187036..101187056,-!p2@ZMAT1!0.90!7.63!ZMAT1;;chrX:56258900..56258917,+!p4@KLF8!0.89!6.68!KLF8;;chr5:158526709..158526741,-!p7@EBF1!0.89!6.68!EBF1;;chr6:41701898..41701939,-!p5@TFEB!0.89!6.68!TFEB;;chr3:71353892..71353928,-!p31@FOXP1!0.89!6.68!FOXP1;;chr17:38020481..38020506,-!p7@IKZF3!0.89!6.68!IKZF3;;chr7:21467674..21467727,+!p1@SP4!0.88!27.67!SP4;;chr6:157098579..157098634,+!p4@ARID1B!0.88!15.26!ARID1B;;chr11:128392085..128392232,-!p1@ETS1!0.87!230.88!ETS1;;chr17:4981745..4981810,+!p1@ZFP3!0.87!33.39!ZFP3;;chr5:88179195..88179224,-!p3@MEF2C!0.87!10.49!MEF2C;;chr5:88179518..88179569,-!p5@MEF2C!0.87!8.59!MEF2C;;chrX:131623044..131623089,-!p1@MBNL3!0.85!26.71!MBNL3;;chr9:3525727..3525828,-!p2@RFX3!0.85!16.22!RFX3;;chrX:56258844..56258882,+!p1@KLF8!0.85!8.59!KLF8;;chr1:14026671..14026705,+!p2@PRDM2!0.84!38.16!PRDM2;;chr3:71179699..71179744,-!p2@FOXP1!0.83!45.79!FOXP1;;chr19:37997297..37997362,+!p3@ZNF793!0.83!9.54!ZNF793;;chr2:60781041..60781064,-!p13@BCL11A!0.83!5.72!BCL11A;;chr7:108209925..108209941,-!p2@THAP5!0.83!5.72!THAP5;;chr9:37034469..37034474,-!p1@PAX5!0.83!5.72!PAX5;;chr19:58694742..58694800,+!p2@ZNF274!0.81!23.85!ZNF274;;chr19:11877805..11877832,+!p2@ZNF441!0.81!9.54!ZNF441;;chrX:131624056..131624069,-!p2@MBNL3!0.81!7.63!MBNL3;;chr3:129158768..129158819,-!p1@MBD4!0.80!87.77!MBD4;;chr19:9546177..9546224,-!p1@ZNF266!0.80!41.02!ZNF266;;chr3:101546827..101546847,+!p2@NFKBIZ!0.80!7.63!NFKBIZ;;chr4:185395191..185395226,-!p4@IRF2!0.80!7.63!IRF2;;chr19:53289995..53290050,-!p1@ZNF600!0.79!22.90!ZNF600;;chr1:91487836..91487854,-!p3@ZNF644!0.79!12.40!ZNF644;;chr8:81397820..81397836,+!p2@ZBTB10!0.79!6.68!ZBTB10;;chr22:29196433..29196445,-!p4@XBP1!0.79!5.72!XBP1;;chr14:64971346..64971357,-!p9@ZBTB25!0.79!5.72!ZBTB25;;chr1:158979686..158979745,+!p1@IFI16!0.78!179.36!IFI16;;chr19:52956798..52956843,+!p1@ZNF578!0.78!10.49!ZNF578;;chr6:109804412..109804458,-!p1@ZBTB24!0.77!47.70!ZBTB24;;chr2:178128250..178128293,-!p6@NFE2L2!0.77!13.36!NFE2L2;;chr19:12512062..12512094,-!p1@ZNF799!0.77!10.49!ZNF799;;chr19:38085768..38085821,+!p1@ZNF540!0.77!7.63!ZNF540;;chr2:231191875..231191918,+!p1@SP140L!0.76!50.56!SP140L;;chr1:249132410..249132456,+!p1@ZNF672!0.76!39.12!ZNF672;;chr11:128392273..128392308,-!p2@ETS1!0.76!21.94!ETS1;;chr8:123793860..123793921,+!p2@ZHX2!0.76!14.31!ZHX2;;chr19:22235279..22235301,+!p1@ZNF257!0.76!9.54!ZNF257;;chr20:44600199..44600219,-!p3@ZNF335!0.76!6.68!ZNF335;;chr8:81397876..81397898,+!p5@ZBTB10!0.76!5.72!ZBTB10;;chr6:41700616..41700664,-!p8@TFEB!0.76!4.77!TFEB;;chr6:91006719..91006730,-!p5@BACH2!0.76!4.77!BACH2;;chr7:50343895..50343936,+!p5@IKZF1!0.76!4.77!IKZF1;;chr17:37934365..37934387,-!p2@IKZF3!0.76!4.77!IKZF3;;chr19:13213954..13214021,-!p4@LYL1!0.76!4.77!LYL1;;chr19:22193731..22193751,-!p1@ZNF208!0.76!4.77!ZNF208;;chr3:71631248..71631268,-!p26@FOXP1!0.76!4.77!FOXP1;;chr20:56195525..56195556,-!p2@ZBP1!0.76!4.77!ZBP1;;chr13:41240737..41240787,-!p1@FOXO1!0.75!61.06!FOXO1;;chr10:35416142..35416169,+!p3@CREM!0.75!13.36!CREM;;chr6:144385698..144385742,-!p2@PLAGL1!0.75!5.72!PLAGL1;;chr7:99156212..99156244,+!p3@ZNF655!0.74!19.08!ZNF655;;chr6:35227282..35227330,+!p2@ZNF76!0.74!18.13!ZNF76;;chr19:37709076..37709154,+!p1@ZNF383!0.74!16.22!ZNF383;;chr19:49140609..49140643,-!p1@DBP!0.73!27.67!DBP;;chr19:56632858..56632903,-!p2@ZNF787!0.73!11.45!ZNF787;;chrX:131622958..131622978,-!p3@MBNL3!0.73!5.72!MBNL3;;chr20:46130672..46130686,+!p2@NCOA3!0.72!20.99!NCOA3;;chr19:56146352..56146420,+!p2@ZNF580,p2@ZNF581!0.71!30.53!ZNF580;;chr19:11877838..11877915,+!p1@ZNF441!0.71!14.31!ZNF441;;chr6:106534230..106534254,+!p2@PRDM1!0.71!11.45!PRDM1;;chr2:208030886..208030917,-!p4@KLF7!0.71!8.59!KLF7;;chr2:61108771..61108789,+!p4@REL!0.71!6.68!REL;;chr19:53466067..53466087,-!p3@ZNF321P,p3@ZNF816-ZNF321P,p3@ZNF816!0.71!6.68!ZNF816;;chr12:54785054..54785072,-!p4@ZNF385A!0.71!4.77!ZNF385A;;chr13:41240717..41240735,-!p2@FOXO1!0.70!30.53!FOXO1;;chr10:104155480..104155534,+!p2@NFKB2!0.70!29.58!NFKB2;;chr19:19976683..19976709,+!p1@ZNF253!0.70!20.04!ZNF253;;chr19:38270215..38270251,-!p1@ZNF573!0.70!18.13!ZNF573;;chr15:67357992..67358009,+!p3@SMAD3!0.70!10.49!SMAD3;;chrX:106960249..106960260,-!p5@TSC22D3!0.70!6.68!TSC22D3;;chr7:128577972..128578047,+!p1@IRF5!0.70!6.68!IRF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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000236;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000542;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988
+|ffid_belonging_in_development=CL:0000134,CL:0000051
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 35: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD19%252b%2520B%2520Cells%2520%2528pluriselect%2529%252c%2520donor090612%252c%2520donation3.CNhs12188.12214-129D9.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD19%252b%2520B%2520Cells%2520%2528pluriselect%2529%252c%2520donor090612%252c%2520donation3.CNhs12188.12214-129D9.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD19%252b%2520B%2520Cells%2520%2528pluriselect%2529%252c%2520donor090612%252c%2520donation3.CNhs12188.12214-129D9.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/CD19%252b%2520B%2520Cells%2520%2528pluriselect%2529%252c%2520donor090612%252c%2520donation3.CNhs12188.12214-129D9.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/CD19%252b%2520B%2520Cells%2520%2528pluriselect%2529%252c%2520donor090612%252c%2520donation3.CNhs12188.12214-129D9.hg38.nobarcode.ctss.bed.gz
 |id=FF:12214-129D9
-|is_a=EFO:0002091;;FF:0000002;;FF:0000025;;FF:0000210
+|is_a=EFO:0002091;;FF:0000025;;FF:0000210
+|is_obsolete=
+|library_id=CNhs12188!RDhi10012
+|library_id_phase_based=2:CNhs12188
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;12214
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;12214
 |name=CD19+ B Cells (pluriselect), donor090612, donation3
 |namespace=FANTOM5
@@ Line 42: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12188,LSID975,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=129
 |rna_catalog_number=
@@ Line 57: / Line 79: @@
 |rna_weight_ug=1.42992
 |sample_age=
+|sample_category=primary cells
 |sample_cell_catalog=
 |sample_cell_line=
@@ Line 77: / Line 100: @@
 |sample_tissue=blood
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+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:12214-129D9;search_select_hide=table117:FF:12214-129D9
 }}

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FF:12214-129D9: Difference between revisions

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Latest revision as of 18:34, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0